<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-23 00:40:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0028J22-UGoge/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-GvM4at/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-GvM4at/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338087" ref_strand="+" ref_description="SGN-U338087        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-UGoge/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="6168" stop="5150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5861" g_stop="5450" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="425" r_length="412" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-U338087" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5861" e_stop="5450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTTTAGCAGTCAAAAAGAGAGAAAAAGAGCAGATTTTCGCAGTC-AAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</genome_strand>
        <mrna_strand>AG-TTTTTCAGCAG-CTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-GvM4at/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326250" ref_strand="+" ref_description="SGN-U326250        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: transcription(evalue: 3e-16, score=87)">
      <seq>ccgggctgccggaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggatgtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaagaactttggatgcatacccaaaaaaaagctgaatacatagaacagtggttagtcttttgctggtacaagatgccagggtttctcttcttgctgatatctgtgttaaactgtcaacaacattgttggtacttgtttgagaggactagacgcctaaaggattcctactaatttctgcaaatatatttgtttgctatactttgattttaattctcttccgctctgtacataccatttggttttgaatgtcacttggaacaaaccatctattatagtttgtacagcacctaagtgcccaaacatttggatctgttctattcttctagtgttttttgatattgattttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-UGoge/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="48273" stop="38355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47985" g_stop="47899" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="201" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38975" g_stop="38653" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="524" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-U326250" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47985" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAAAGAGAATG</genome_strand>
        <mrna_strand>CCGGGCTGCCGGAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-GvM4at/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346225" ref_strand="+" ref_description="SGN-U346225        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SWIM zinc finger family protein, contains Pfam profile PF04434: SWIM zinc finger | chr2:3037410-3042857 REVERSE | Aliases: T13E11.9, T13E11_9(evalue: 1e-07, score=53.9) genbank/nr: gi|37534718|ref|NP_921661.1| putative mutator-like transposase [Oryza sativa (japonica cultivar-group)] gi|31432298|gb|AAP53948.1| putative mutator-like transposase [Oryza sativa (japonica cultivar-group)](evalue: 1e-25, score=120)">
      <seq>tccaatggaaataatggtattgaatacaaatgtaacaagatcaatgcagtgcaacattgaatggaatggtgatgttggatttgaaatgttagaaggggtatacaagcatactgtgaacttgggtcaacaaaaatgtagttgaagatcatgggaattaaaaggtatcccatgtgcacatggtatagcagcaatgaactacttgaacatggatgcatcacaagcaatatctagttcgtatagaaaagacacaaatatgaagacatattctcatttcattcaaccagtcccaaacatggaaatgtggcctgaaagtagaaacccaatggttaaaccacctaaggcaagacaaatgcctggtaggtcaccaaagaatagaagaagagaaattggtgaagtgagaaaagctggaaagttgccaagaatggggacactaatgacatattcactttgcaaaggaccaaatcataacaagagaaattgtccaaaaaatcctaaacctatgtctacaccaacacccactcaagagtccaccactggaaaaaaagtggtagaggttattatgaaagaacaagcactagtaagacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-UGoge/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="57088" stop="55958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56788" g_stop="56263" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56262" i_stop="56175" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56174" g_stop="56112" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="588" r_length="62" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-U346225" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56788" e_stop="56263"/>
          <exon e_start="56174" e_stop="56112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGACAATGATGGTATCCAATACACATGTAACAAGATGAATGCATTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGGGGTATACAAGCATACTGTGAATTTGGGTCAAGAAAAATGTAGTTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAATTGCTTGAACATGGATGCATCATAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGCAAAAACCCAATGGTTAAACCACCTGAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAACAGAAAAAGAGAAATTGGTGAAGTGAGAAAATCTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCAATTTGCAAAGGACCAAATCATAACAAGATAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAGGTACATTTATATTGATTTGCTTTTATAAATTATGTTAGATTACTTATTTATTTAATCTCTTGTTGTGTTCTTTTTCCACTCATATTAGTCCACCACTGAAAAAAAGAGGGATAAAGATCACTATGAAAGAGTAAGCACCAGTAAGACTGGT</genome_strand>
        <mrna_strand>TCCAATGGAAATAATGGTATTGAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAATGTTAGAAGGGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAGTTGAAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAACTACTTGAACATGGATGCATCACAAGCAATATCTAGTTCGTATAGAAAAGACACAAATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGTAGAAACCCAATGGTTAAACCACCTAAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAATAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGCTGGAAAGTTGCCAAGAATGGGGACACTAATGACATATTCACTTTGCAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTATGTCTACACCAACACCCACTCAAGAG........................................................................................TCCACCACTGGAAAAAA-AGTGGTAGAGGTTATTATGAAAGAACAAGCACTAGTAAGACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-GvM4at/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340396" ref_strand="-" ref_description="SGN-U340396        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:20379150-20381066 REVERSE | Aliases: T15C9.1(evalue: 2e-61, score=179) genbank/nr: gi|18410169|ref|NP_567011.1| expressed protein [Arabidopsis thaliana] gi|17381054|gb|AAL36339.1| unknown protein [Arabidopsis thaliana] gi|21280921|gb|AAM45074.1| unknown protein [Arabidopsis thaliana](evalue: 1e-59, score=179)">
      <seq>tgtcagtggacatgttgatagtttggaggaacttgaggaaaaattttctacagcttttgatgtttatgtccatgttggttcctatgttcctccgctctttggtattcacgaaaatgcagcacatttggcagttgtaggtcgtggtagacgcgttgcaaatgccaaatactcagattgggttaggtaggcaaaggaaacaattggagaagctgaggccaccttctgtcaacgagctcctgttgtcaaacaatggcgatcagatcttagagggttgtttgactaatttttttgttgtttgccacaaggatgttaatggtgataatcacaagtctacagtttcaattgaattgcagactgcccctataagagatggtgtccttccaggcgttgtacgccaagtaattcttgacatatgctcaagaaacaaaatcccagtcagagaaattgcacctgcatggtcagagcgtgaaacgtggtcagaagcattcattacaagtagcttgaggctattgcagcatgtggaagttattcaagctcctagttcgtggggatcacttgatacacaaacttggactgacgtatcttgggaggagaagcgatttgagaatgctcctggacggatcactgcattcatccagaaggaggtcatggaaatggcaagcacggaagggtatccagtttctctatttaatgaccggtagatcttcccctcatataatatgtgctaattgtggtacgattggaaaggtcgtatcttaaaaacacaatgttttagcctgcgatatcttcccttcacacaaccctgttacatttattctggtgtacaattgactttatgttgaatcatttgattataaggagaaccgtaattaactcaaacaaaggtgaatagttcaataacagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-UGoge/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="75384" stop="69929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75084" g_stop="74902" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74901" i_stop="74590" i_length="312">
            <donor d_prob="0.039" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74589" g_stop="74468" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="305" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74467" i_stop="72734" i_length="1734">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72733" g_stop="72630" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="409" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72629" i_stop="71892" i_length="738">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71891" g_stop="71806" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="495" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71805" i_stop="71403" i_length="403">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71402" g_stop="71293" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="605" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71292" i_stop="71198" i_length="95">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71197" g_stop="71165" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="638" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71164" i_stop="70498" i_length="667">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70497" g_stop="70229" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="907" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-U340396" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340396" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75084" e_stop="74902"/>
          <exon e_start="74589" e_stop="74468"/>
          <exon e_start="72733" e_stop="72630"/>
          <exon e_start="71891" e_stop="71806"/>
          <exon e_start="71402" e_stop="71293"/>
          <exon e_start="71197" e_stop="71165"/>
          <exon e_start="70497" e_stop="70229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGTGGACATGTTGATAGTTTGGAGGAACTTGAGGAAAAGTTTTCTACAGCTTTTGATGTTTATGTCCATGTTGGTTCCTATGTTCCTCCGCTCTTTGGTATTCACGAAAATGCAGCACATTTGGCAGTTGTAGGTCGTGGTAGACGCGTTGCAAATGCCAAATACTCAGATTGGGTTAGGTAATTGTGCATGAACAGCTGGTTGCTTTCCTTTTAACCGTGATGTACTCAGTTTCCCGTTGATACTAATGAATGGTGATTTCGTTTGACGAGAAGGAGTTGCTCCGATGGTAAGCACCGCTCACTTCCAACCCTATGGTTGTGAGTTTGAGTCACCAAGGGAGAAAAAAGGGTGGGAACTCCTTTAGAGGGGGTAAAAAGGAGAAAAAGATGGTGATTTTGCTGTAGTATCTGATTTGAAGATATAGGGAAGAGATGAACTTTGTTGACATAATCTTTTTTGGTAATGGAAATTTGTTGTTTTCGTTATAGGTAGGCAAAGGAAACAATTGGAGAAGCTGAGGCCACCTTCTGTCAACGAGCTCCTGTTGTCAAACAATGGCGATCAGATCTTAGAGGGTTGTTTGACTAATTTTTTTGTTGTTTGCCACAAGGTAAGTGTCGTTAGAAAACTGTTATTAGGTCGACCTAGTCCTATTTTGTTAAAGTTTTGTGTTGCACTAAGAAAAGTTGGAATTTTTTTATTCTGTATAATCTTTTATCATGGTTAGATTTCAGATGACCAAAACCATTTCTGTTCAATTGATTTTGTTAATAACAACTGGCACTGAGATCTTATTTGATCTTGTAAAAGGTGTACCAATTTATTAGTTGATTGATGGTTTTTCTGGGAAGTTGAGTTTCATCAGCTTAAGAATGTAAAGCCGTAGTTGTTTAATTAGAGATTTCATTTGTTGAAGGGAACAATTGGTCTTTTTAAGACAGCCATTGTTTTTGTTGGTGGAGAATTGTAAAATTGAATTTTACACTAGATTTAGAGTACTCACTGTTGTAATTATACAACCTGACTTTGTGGCATCTTTGAGCCATACATAAATAATTCATCAGTGAATTTAGTGCTTAGATTGAAACCTTTCTATGAGACTTAAGATCTATAATAATGGGCTTGTCTTCTAGTTGTACAGGATGAACATAGCTTGACAAATTCTAATTGTCAATTACAGGAAGGTTATTGATTGTATATTTAAATTTAGTTCAGATAAGCGCCATCTTGTTGCTAGTCTTCTAACAATAATGAAAGTTCTTTTTGATAAAGTAACAATTAATAGAACTTACATTGTACTGATCAAAAAGTTGTAAGCTTTACTTCTGGGCACACTGGAATGACTTGGACTAGCCGAACTACTCCTGAATTTTAAGGTTATTGGAGCTATAGAAAAAAATCACGGGGCTATAAAAGTTTGAGTGAAGCTTGAAGAAAATATGGAATACAATTCCTGCATGCATTTAGTGGTCTATCTGGAAAGAAATCTGGGGTGCTTTTGAAGATGTACCAACTCCTTGCTGAAGGTCCAGACTAGTTATATACTTCTCCCGTTTATTTGGTGTAGGGAGTAATATGTACACGAGGCTGAATCACCACCGATTGATTTGTAGGTTGACTTAGAAGGAAGTAGCTATACTTTTGCTTTTTGGATGTACATGATACAACACCATCTTAGTGCTGATTTCAAAAAATAAGGGAAGAAGCTCTTTTACAGCTCAAGGGAAAAAAGTGTTAAGCTTTACTTTAAAATGGACACAGCATCTGCGCTGAAGGCATATTAACTTCTATCTAGCAGGAGTTACAGCAATTACTAGCCAAGCTATCCCCAAGTAGTGCATTAGTATTATTTTGCTGAGGATAAGGTAAATCCTTAGTGACGACATTCCATCTTCTCCTTCACAAAGTGAATGCAGGATGTTCTTAACTTGATGTGAAAAGCTTATGTAAAAAAAAACATATTGTCCAAGGAGCATTTATGTGTTATTTAGAAAAATACTATGGGGGTGGAATGGAGTGGGAGTTTGGGGATGGCATAGGATAGGATGGTCAAGGGGAGGGGTGGGGGTAGGGGACTGCTTGGAGGTGGGAGGAGACAAACTTCACCAATGAAACTTTTTTTCCCTACTTGCATTAGGGAAATTATTTTCTTCATTTTTAAGGAACTTGTTTTTACAGAGAAAAATTTCGATCGACCAAACATGAGCAAATTGGAAATTATCTCTGCATACCAAACACACCCTTAAGTTTTATCATTTTGCTTTAACTTTATGTGAATAGAGTATAACTTATACAAAGTCCATCATGTTTTATCTTACCGAAATTACTAAAATTTTTGCTGCAGGATGTTAATGGTGATAATCACAAGTCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGAGTGCGTTCCTTCTCTGGCCTTCGAAACTTGACATATTTTAAGTTAGAACTTAAGGTTACTGTATGGAACTTCATCTCGCATTTTGAGCAACTTATTCATCTGTAGAATGTAATAAATGCTGGTCTACTTGGAAGGGGTTACTGTTGTGTTGACTTGGTTATGCCTAATGTTTTATATGGTTGGCACAGATTCATTCTAGATCATTCTCTGTTGCCCTAATCCTATGTGTTCTGCACATATTACATACTGTACCATAAAGAATTTCCTTTACTGGTAGGGAGTCTTATTGAAGCAGATCTTGTACAGAAATCTCTTTATATAATAATTGGAGGTAAGTTAATTAATAATAACTCATTAATTAGTAATTTCTTTTAGCAGTACATCTTTGGCATTGAGAACTTTTATTTGCACGCCATCATATATGTTCCCAAAGGAGTGCTATATAAAATGGTCTGGACTCTGGTATTTGTCCTTGTGCGTGATGCCCATATTTGAACCGCAAGGACAATATGAAGCTATTGAGGCTCTGTGGTTTATTGAAGAAATGAGAAATATGGACTTTAGAATTGAAAGGATTAAATCATGTTGTTTCTATTAGGTTTAAGTGATCTGTCAAGAAAAAAACATTAGTGACCTGTCTGCTAGGAGCTGCTTTCTTTCTTAAAAAAAGGTTATTCCAGATCTCATTAAAATTGTACTTTGTTAAATAATGACCATGATAATCATGTGTTTGTCCAGCATATGCTCAAGAAACAAAATCCCAGTCAGAGAAATTGCACCTGCATGGTCAGAGCGTGAAACGTGGTCAGAAGCATTCATTACAAGTATGTGTCTCAGTCATAAGCTCAAATAATTATCATTTCTTCAGCATTATATACTCAAAGCTTACTTTATTCTACGCTGGGTGCTCCAAAGCTATTTCCCTTTACCTGGTCAAGTGGAAACTGAATTTGTAGTATACATATTTGAGCTGTGGTCCTAATACTTAAACCTATTGCCCATCAGTTTTCCAGTTCAACTTCATGCTTGTTATGTGCAATATAAGGTTGTACTCAGTTTAAAAGTGAAAGATAAGAGTGAAAATTGTGCCCAACATTCCATTATGTATATTGCTGACAGTTTAGAAGTGAAGGGTGGTAGAAGCTTGTTTATCATGAATTTGTGTTCCTATATACAGTGGAGGATTTATTCTTACTGTTAGCATACTTATTTGAACTATTATTACAGGTAGCTTGAGGCTATTGCAGCATGTGGAAGTTATTCAAGCTCCTAGTTCGTGGGGATCACTTGATACACAAACTTGGACTGACGTATCTTGGGAGGAGAAGCGATTTGAGGTATGACAAATCCATGCACTAACAACTTGATAAATAAAAGAAGTTTTGAAGCTGCTCGTTGAATAATCCCCTTACTGATGTTTGTGAAATTTCAGAATGCTCCTGGACGGATCACTGCATTCATCCAGGTAATAAAAGAGATATTTTTCTTAATCTTTATGTCATTTAATAGAGAGATTACTTGTTTGATTCTGTACCATTTTTAACGTAGATTTGTCCACCCTTACATTACTAATCATTACTTAAGTTATAAGATTGAGTATTCATCCTGCTTCCCCAACCAGATACACAAACCAAGTGCATAATCTTGTACACTGAATAGTCTCTTAACATACTGAAAAGGGTATACACCAATGTGATCAGAAGCAGTATACATTTATGTCGAGTCTCCATTTTGAGAAATCCTCTTATGGCGTGCTTGTAGAAGCATTAAACAAAATAATTTGATTGTAAAAGAAGACGCTATTACCTGAATCAGATAGGGCTGTAAATATTCACCCGGGCAGAGTATACTATCTCTTTCACTCTCATTTCCCCGTCTTGAGCTCTTGCTGTCTGGGTACAAGCAGAAGTTACCTATGAAAATTGACATGGCAAAACCCCTCAAGAGTATGATGCCCCCGGCCTTCCTTTTAGTTGTTCTCTTGGGTACTCTTTCCTTATATAGACAGTAATCATTGGTCTACTTGCACCATGTTTGTCACTTAAGCACAAGTAGTGGAACAATTACAAAATTGTGAAGCCTCTTGTATTGCACAAGTAGCGAACAAAGACTCATTGTTGTTTTTTCTGCAGAAGGAGGTCATGGAAATGGCAAGCACGGAAGGGTATCCAGTTTCTCTATTTAATGACCGGTAGATCTTCCCCTCATATAATATGTGCTAATTGTGGTACGATTGGAAAGGTCGTATCTTAAAAACACGATGTTTTAGCCTGCGATATCTTCCCTTCACACAACCCTGTTACATTTATTCTGGTGTACAATTGACTTTATGTTGAATCATTTGATTATAAGGAGAACCGTAATTAACTCAAACAAAGGTGAATAGTTCAATAACAGTTGT</genome_strand>
        <mrna_strand>TGTCAGTGGACATGTTGATAGTTTGGAGGAACTTGAGGAAAAATTTTCTACAGCTTTTGATGTTTATGTCCATGTTGGTTCCTATGTTCCTCCGCTCTTTGGTATTCACGAAAATGCAGCACATTTGGCAGTTGTAGGTCGTGGTAGACGCGTTGCAAATGCCAAATACTCAGATTGGGTTAG........................................................................................................................................................................................................................................................................................................................GTAGGCAAAGGAAACAATTGGAGAAGCTGAGGCCACCTTCTGTCAACGAGCTCCTGTTGTCAAACAATGGCGATCAGATCTTAGAGGGTTGTTTGACTAATTTTTTTGTTGTTTGCCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTAATGGTGATAATCACAAGTCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCAAGAAACAAAATCCCAGTCAGAGAAATTGCACCTGCATGGTCAGAGCGTGAAACGTGGTCAGAAGCATTCATTACAA...................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTGAGGCTATTGCAGCATGTGGAAGTTATTCAAGCTCCTAGTTCGTGGGGATCACTTGATACACAAACTTGGACTGACGTATCTTGGGAGGAGAAGCGATTTGAG...............................................................................................AATGCTCCTGGACGGATCACTGCATTCATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGTCATGGAAATGGCAAGCACGGAAGGGTATCCAGTTTCTCTATTTAATGACCGGTAGATCTTCCCCTCATATAATATGTGCTAATTGTGGTACGATTGGAAAGGTCGTATCTTAAAAACACAATGTTTTAGCCTGCGATATCTTCCCTTCACACAACCCTGTTACATTTATTCTGGTGTACAATTGACTTTATGTTGAATCATTTGATTATAAGGAGAACCGTAATTAACTCAAACAAAGGTGAATAGTTCAATAACAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-GvM4at/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326365" ref_strand="+" ref_description="SGN-U326365        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr1:4642343-4644419 REVERSE | Aliases: F13B4.6, F13B4_6(evalue: 7e-15, score=79) genbank/nr: Cyclin-like(evalue: 2e-19, score=100)">
      <seq>tcgagatgttgtaagagttagtacactttcaaaggactggcaatataatttctagagaattccacatgtgaaattttatcaaacagtgtggaaaacacccgaggacttgacatcccctgccattggatttattccgattcttgatagtttgctcaggtttcatagaggaataatattgaaggtcaccctcaatattattagtctaataatgtgtcctaatgttgatcgtctaattttttccctcgacattgatcacattcaacattttgtccttgaaattccatttacttatcctccatttaggttgcccaacttcttttttattgttcagcattgaggcatttctatctcatgggatgtgaaatacaactttcatgtttctttaagggatttaataagttgattaggctaatattgaaatctgtatcgttatcttctgatacgtttgaaaatttgatctctaattgcccgttgcttgaggatttggtgctaaaagacacagacaattcgtacctcattattagtaattctcttaagctaaggtcatttgtctttcgtggcgatatacaattgatacatcttgaaaatgtccctgttctttccaatgttctgtatgcgcctagagaattagttctagaggacgaagatgattttgtcaatattttttcgtctattgttgctctccagtgtttcagcatggatctttttgagttcgataatggaacaactaaagttataccaacaaggcttccatcagttcttaactgtctgaaatgcctattcatgtcttggattactcttggagagttttttaagctttcgtttgctctttgcattataaagagctctccaaatttggaagaaattgaaattaaggaatttttctttagtgatggagattatttcgaatctgtgtcccaggaggttgttgatgagattcttccaagcttttcggatatcacatttaatcatctaaggacagttaagttttatgatataccattagaagaggttgaaatacagcttatcaaggttttattggcaaagcctccaacattggtgaaaatggtaatcaagcctcgtcaaatggaaactatcaaatctctcaacttactcgcggagataacaaagttttaacaggcaccatctaaagcagaagttgtgtatcttttttattagtatcgttatcacaatccttcctaatctttggttaaaatatttttgaagtacaaacagaaacgagacatttggttgatggagtaacaagactgtgttttgccttcgctttaaggtactataaagattttatctgcttggaagcatagaattgtatatgttttgtatactctgtttgggaacagagatggtttttacatttcatggatgctcttaaatgatatatgatttgagtctttggttgtttattgcaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-UGoge/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="+" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="93609" stop="105792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93907" g_stop="94617" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94618" i_stop="94713" i_length="96">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94714" g_stop="94878" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="876" r_length="165" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94879" i_stop="94970" i_length="92">
            <donor d_prob="0.912" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94971" g_stop="95385" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1291" r_length="415" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95386" i_stop="105353" i_length="9968">
            <donor d_prob="0.860" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105354" g_stop="105492" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1292" r_stop="1431" r_length="140" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1432" polyA_stop="1447"/>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="+" ref_id="SGN-U326365" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1430</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93907" e_stop="94617"/>
          <exon e_start="94714" e_stop="94878"/>
          <exon e_start="94971" e_stop="95385"/>
          <exon e_start="105354" e_stop="105492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGGCAATATATTTGCTGGAGAATTCCACATATGAAGTTTGATCAAACAGTGTGGAAAATACCCGAGGACTTGACATCCCCTACCATTGGATTTATTCCTATTCTTGATTGTTTCCTCAGGTTTCATAGAGGAATAATATTGAACGTCACCCTCAATATTATTAATCTAATAGTGTGTCCTAATGTTGATCGTTTGATTTTTTCCCTCAACACTGATCACATTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCCTCACAAGTTGCCAAACTTTTTTTTTGATTGTTCAGCATTAAGGCATTTGTATCTCAAGGAATGTGAAATACAACTTCCTTGTTTCTTTAAGGGATTTAATAAGTTGATTAGGGTAATATTGAAATCTGTCACGTTATCTTTTGATATGTTTGAAAGTTTGATCTCTAATTGCCCGTTGTTTGAGGATTTGGTGCTAAAAGACATAGTTAATCCGTACCTCATGAGTATTAATGCTCCTAAGCTAAGGTCATTTGTCTTTCGTGGCGCTATACAATTAATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCACCTAGAGAATTAGTTTTAGAGGACGAAGATGATTTTGTCAAT-TTTTTTCGTCTATTCCTGCTCTCGAGTGCTTCAGCTGGGATCTTTTTGAGGTAATAATTCTTCATTTTACTTAATGGTAATGCATTTTCATTTGTACTTTTTTTGTGGAATTTCTGTCATCCTTATTTTTGTCATTTTATTCATAGGTCGATAATGGATCAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCAGAAACGCCTGTTCATGTCTTGGATTACTCTTGGAGAGTTTTTTGAGCTTTCGTTTGCTCTTTGCATTATAAAGATCTCTCCAAATTAGGAAGAAAATGAAATTAAGGTTGTCACTAATGTTTATTTTTCTCTCTAGCTTTTCCATGTTTTTATATTTGTATGTAATGACTTGATGGTTTTCTTCTTCATTTTTCTTAGGAATGTATCCTTAGTGATGGAGATTATTTCGAATCTGTGCCCCAGGAGGTTGTTGATGAGATTCTTGCGAGCTTTTTGGATATCACATTTAATCATCTGAGGACAGTTAAGCTTTATGATATACCATTAGAAGAGGTTGAAATGCAGCTTATCAAGGTTTTATTAGAAAAGTCTCCAGCACTGGCGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTAACAAATCTCTCAACGTACTTGCGGAGATAACAAAGTTTCAACGGGCATCATCTAAAGCAGAAGTTGTGTATCTTTTTGATTATTATCGTTATCACAATTCTTCTTAATATTTGGCTAAAATATTTTGGTAGTACAAACAGAAACGAGACGTTTGGTTGATGGAGTAGCAAGGCTGTGTTTTGCCTTTGCTTTAAGGTACTATAAAAATTTTATCTGCTTGGAAACATAGAATTGTGAACCTGGATAAATGTTTTGAATACTCTATTTGGGAACAAAGATGGTTTTACATTTCATGCTTGTTATTGATTTAAGACTTTGGTTGTTTATTTTGAAATTATGTTGTTGTTGTTCATATTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAAGTTTAAGAACATTTTCACAACTAGAAAATTAAAACTAGTAGAGAAAATAGAATCAGAAACAGATTTCAAAAAAAAATATACGAAATATTTTTCTTAAAGAAGAATTGTTGTTAATACGTGTCTAAAGAATCTTACTGATTCCAACAAACTTTGCAGAAACACGAAGTTACCAAGTTTAATGAACCAGTGAAGAACAAAAGAATAGAAGAACTGAAATTAATTCGCAAATCTAATGTTTGTAAAACACATATCAGAATCTGGAAAATTTTTAATAGGAAAAATATCAAGTCCACTTAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCTCCCAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCTGGTGTCAGCGAACCACTCAATGGCAGTAAAGTACACTTAGAATACTAGATTTAGTAGTTGAAGAAGAAATCCATAAATTCTATTTATAATGAGAGGAAATCCCTCAATTTATAGAAAACAAAGGATAGTGCGAAAAGGTTCTTATTGTGCCTTACCGGAAAGGTCACAAACCTTTGGAAAAGTACAATCTTTCAGAAAGGTCGTCACCTTTCATAAAAGTAACAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAACTTTTCATAAAAGTCGCAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAACATTTCATAAAAGTCACAACTCTTCATAAAAGTCGCAATCTTCATTTTCCATTCACACCTTTTTTAAAATCCAACAATCCCCCGCATGAATGGAGAATGACTCAAAGACAAAGAAACGGACAAGTATGTGTACTTTACAAGCAAGAATTAATTGCATCTGGATAAGTAGGTTTCCCCTTGGACTTTCCGTAGTGAACATATGTCGGATATACTCGGTCAATCGGTAGATGCGATATCTTTGAACCGTCGAACTTTGGTGTATACCTGACAACCATATGTCACACAATTAACCCTTTACCGTTTATGGTTATTACGGTTGTGTTCGTTTTAGCCATGAACACCTCCTGGTTTCAGGAGTGTATAGAGAGATGGGCTTTTTACAATCACTTCTTTGAAGCGGCTTACACTTCACACTCACATAGGTGATTCCTAACCGTGTTATCGCGTAGATACACTATTTGGTCAACTCTGCCAAACTTAGCAAATCATTAAAACCATTAAGCTTTATTAACTCATTAACAAGCCTTAATGTTGTATACTCGTCCCTGAGCATTGTCTTCATCATGAGAATGGATTGAGTTTGTTGATAATGCCGAACCGTCATTCACAACTTTGTTTTTCTCCTCGAATCTAGCTCTTAAGATCTCCAGTCTGCTAGATAGAGTTACAGCCATGATGACTTGTCCTAAGCCGTAAATTCATTCCCTTAGATGATCTTTTAACTTCCTCTCTAGTTAGGCCTTTTTGTAAGTGGATCCGACACATTATCCTTTGACTTAACATAGTCAATTCTGATAATTCCACTAGAGAGTAGTTTTCTAACGATATCATGTCTATGTCGTATATGACGAGACTTTCCGTTGTACGTCATGCTCCATGCCCTACCTATTGCATCTTGACTGTGAAAGTGTATGCATACTAATGCCAATGGTTTCGGCAAAAATAGAATATCTATCAAGAAATTTCGGAGTCTTGCAACTTATTTACCGACCTTATCTAGAGCACCTAGCTCAAAGATCATTGTAGAGATAGCGATACATGTATCTTTTGAAATATTTCTAAGAGACTGCTCCTCTACCAATAGTAAATACATATCCACTCGTGAATTTTACTTCATTCGTCCGATGATTCATTTTGCATCACTATATCTTTCAATATTGTTGGATATTGTTATAATGCACGACATAGTTTTAAGTATTATTTTAAATACTCCAAAACTCTATTTATTGTCATCTAATGAATTTATTTGGGATCGCTTGTAAACCGACTCAGTTTAAAATAGCAGATGCTATATCTGATCGAACACACTATATGATATACAACATGCTTCCCAAAACTCTAGAACAATCCAATTGTGAGTACCTTTTGTTTTCACTCTTTTCAAATGCATAGATCACATTTATTGGAGATTTGACAATATTGGCATCCAAATATTTGAACTAGTTAAGTACCTTTTCAATGCAATGAGACCATGAAAATGCTAAACATTATGGATTTCTACGAATTCTTATATCTAAGATCGCATTAGCAACTCCAATAATTTCCATTCCACTTGCTTTGTAGCATACATTTAGTAGCATTTATGTTATTAGTGTCTCAATTGATGATCAACATATCACCAATATACAAACAAACAATGACATTATGATTTAATGTGAACACATTTATCACTTCCATCATTCTTCAATCCATTTGTCGACATGGTTTGATCAAATTATGTCATTGTTTGGGTGTATCCATAATGTAATTTAACAAGTTCACACACTTTCTTTTATTTATTAGGAACCACAAAACCCTCGGGTTGTTCCATGTAAATTTCTTTCTCCAATTCTACATTTAAGAAAGTTCTTTTCACATTCAATTGATGAATTTGGAGGTCATATACCACACTAATAATTTTTGCATCCGAATGGATATAATTCTAATTACTAACGAGTATATATATATTGACAAGATCAAAACCTTGCTTTTTTCTTCTCTAAAGCCTTTGACACAAAGTCTTGCTTTATATTTTTTGACAGTTCCATCAACTGTTATTTTCCTTCTAAAGATTCACTTTGAACCCAAAGATTTATTTTCTTGAAGAAAATCAATTAACTTTCAATATTGTTTATTGAAACCATCTTTCCAAAGATGAGTCTACAGAAGACACAGGAAATGTTACAAAATCATATTCAAAGGAAGTAAATGTCCTTTAACATTTACTAAGCCTCTGAATTTCTTTATTAAGTACATTATCCTTTTCATTTTCAAGGCCTTTTAGACCGTTTTCTAGACTCTCAAGTCTAATTTTACAGTCCACAGTGATAGTTCCTATTTTAATTCTTTTAGGAATAGGAACTTGGACTTTGACTAGATACTCACACACGTTGAAATACTTCAAGTTGGATTTCCTTTCTTTCCATTTCTCATATGGAAAAGATTGTATTCTAATCAAACAAAGTCACTTTCTTTCTAAAAAGACAACTTTTTGTTGTTCCCTTTTGCAATAAGGATAGTTCCTCCACACAAATTTTGTGTAAACCAGAACTTATAAATAATGCATCCATCATTTGTTTCAACGTTCGGTTTTTCATTAGATTGAGGTGAATATGACAATAGTTTGATGGATATTCCACTTTCCAAACATATTTCTGCACAATAAGATTTATACTCTCCATTCTTATCACTTCTTATATTTTTTCACACTGATTTTCAACTTCGATATTACATTGTCTAGACATTTCTATTGCTTCATCCATACCATTCAACAAATAGACATAAGCATTTATAATGCAATTCTCAATAAAAGTAACAAATACTTTTTCCCACCATGAGATGGTGTTAATTTCATATCACAAATGTCAGTGTAAATTAATTCTAAGGGTTTAGAATTCCTTTCAACAGATTTATAAGAATGTTCAACATAATTAGATTCCACAAAACTTGACATTTTTATTTATTGCACTCAAAGTTAGGCAAAACTCCTAAGTTGATTAATTTTCTTTACATGGTTTTGTAATTGACGTGCCCCAAGTGTTCATGTCACAAACATTGACTCAAGCAAGTAAGAACAAATAAAAAACATTGAGTTTGAAAAAGCTCTTCGTGAGGTAGCTTTTTCCTCACTAATATTTTGTTCCTATTTCTTACAATTTTGTGTGATACAAACATTGTTTAGATTGTCAAATGTCCTTTTCAGAAGGACATTTCCATAACTTTCAATATGATTGTTATAGTACTACCCATGAACAAAGTTTCATCGGGTTCAATAAAGACAATATAGTCCAAATGTTATTTTTACAAAAACATAACAAATGACTATTCAACAATATTCATGTCTATGCAAATACTTTTATTATAATAGACATATCTTTTCATGAAAAATCACAACATTTTAAGTGATTTTTCCCCATAAAAGAACACAATTATTTTGAACAAGTATATATAATAATTTGGATGTTTCATACTAGTCACACTATATACTAGTAATAGAGAAACTCAACAACCACAATACCAAATATACCCTAAGAATTTTGTGGGTATAACATAATACAAAAGTATCATTGAATTTCATATCTTTTGCTCCAAAGTTAAATTAGACACCAAGTCTGATCATAAGCAAATAACCCCCACATTTCAAATGTAATCTCAAAAATATTTTTCAAGTATTTTGAAAATAGTTTTTCCACATATTTTAATGTTGGAAACATTATTCTACGAAAGAATTATAGTGCTGCAATTCTCTTTGACAATGTATACACAATGTCAAAGTTCATTACATAAAGACACAAAATCACAAATTCTAAGTCACTGGTATTTTTTCTCTATCATAAATAGACATGCCACTTAGTATTTTAAATATTAACAATAAGGACAAAACAAAATTGTACAATTTATTTCTATGTTATATTGAAGTTAATAGAAAATCAAAATTACAACATTGACTTATTATGTGAAGTTTTCATATTCTTCAAACCAATTGCAGAGTCCAATTTATCCAGAGTATAAAACCACAAAAATTTTTAGTCTACAAAAATCAGAGACACTAACATTTCTCATGGAGTACAAAACTACAAAAGTCTTTTTTTTGTCCAAACAGAATAACACATATTCTTTATCACATAGAAATGTTTTTCTTATCAAATAGTCTTCCAACTATAACAATTTGACATACTATTTTATCAAACAAAAATATGCATCTCTCATTTTTGCAAACTAAAGAATTTTAAAAGCAACAATATCTGCGAAGTAAAATTCATTCCACAACATATGGTTTGCAAATCTTTTTCCAAAGATACACATAATAATAAAAAAATAAAAAATGATTACTCTTAGAAACTATTTTCCTCCTTAGATAATTTAATAAGAAGGTTTCCTGGTAATCTTTAAACGGAATACCATAAATTTTTTTGTTACATTCTCACTTCGACTTTGGTAAAACAAAGGAACGAATTATGGAGAAGTAATGCATTTATTTCTACTTCCATGATCAGATTCTCTCATTCAGTAGAATACAAAAAAATACTAACAACATAATAATTTCCTTAAGATTGTTGTTCATATTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAAGTTTAAGAACATTTTCACAACTAGAAAATTAAAACTAGTAGAGAAACTAGAATCAGAAACAGATTTCAAAAAAAAATATACGAAATATTTTTCTTAAAGAAGAATTGTTGTTAATATGTGTCTAAGGAATCTTACTGATTCCAACAAACTTTGCAGAAACACGAAGTTACCAAGTTTAATGAACGAGTGAAGAATAAAAGAATAGAAGAACTGAAATTAATTCACAAACCTAATGTTTGTAAAACACATATCAGAATCTGGAAAATTTTTAATAGGAAAAAGATCAACTCCACTGAATTCACAATGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCTCCCAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCCGGTGTCAGCGAATTACTCAACGGCAGTAAAGTACACTTAGAATACTAGATTTAGTAGTTGAAGAAGAAATCCATAAATTCTATTTAAAATGAGAGGAAATCCGTCAATTTATAGAAAACAAAGGATAGTGCGAAAAGGTTCTTATTGTGCCTTACCGGAAAGGTCACAAACCTTTGGAAAAGTCACAATCTTTCAGAAAGGTCGTCACCTTTCATAAAAGTAACAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAATATTTCATAAAAGTCACAACTCTTCATAAAAGTCGCAACTCTTCATTTTTCATTCACACCTTTTTTAAAATCCAACAGTGTGTTGCAGAACTAAGAAAGATTTTGCATGACATTCTTGTTATTAATTCATCTCTAAAATAAGACATAGCTTTGGAAGTTGGAACTGTCACGGGCTAATTCAGGTAGAAAATGAAAAACACATGATGATTTACATATAAAACTCGCAAAAGGAAAAAGAAAATGAAACTTTAACTGTGTCTTAATTAGCTTTTCCTTAATTTTTTCTTCTACAATATATTCTCTCTATTTTAATATTAGTGATGCATCTTAAATAAGATATATTACATACTTTAACATGTAAGATGACCGTATGATATACAAAATATTTAAACGACAAAATGTATTTTACTTGGGAGTTAATATATATACTCTTAGAATCATTAATAAAAACGAAAAAAGAAGTTTTAGTTGTTAAATACGAAAGTAAATTTGCTCTTTATTTTAGATGGGGGCACAAAGGTCGATTTGATTTAATTTTTAATTAAAAAAACCTAAACTATTATTTCATTTTATTATTTTTTTGATTTTCTTATAATTGCATGATGATTGAAAAATAGATTAAATATATTTTCAAAATTTTCAAAAAACGATAAAATTCACATAGATAAAAAATACTTTCAACATTCGTTACAAAATAAATTGTTAACTTCAAAAGTGAAACTATAATAGTATAATTATAACTTTCATCCTAATACAAAATAAAATAATTTCAAAAGTTTGTCTCTTCAGTTTCTTCCAACACCTCCATTTAAGAAGACAAAGGGAGCAGAGTGCTTCACATTCATCCTCTCTCAGGTTCTTCTTCTTCTTCTCTGTTAACACAAACTCTCTGTTTTTATGGTTCTTGTTCTATAGAATTTTGATATCAAGATTGCATTTTCATTTTTTGGGTATGCTTTAATATGGTGAAATTGAAGTGGGGTTTGCTTAAAACTTGATGTGGTTAATGTTTTCCAAGGACATGATGTGTTGGTAGGTGTAGGTCTATCATGGATGTGTTTCAGTAGTGGCGGAATTAGGATTTTCACTAGGTTGAAATAGGAATAATAAGTTTCTAAGTTTTGAATAACTAAAACAACACTTATTTTACTTGGATTTGATACTCTTATTTTCTGCAGATTCTTGTTGTAGTAGTCATTTGATGTTATGCTTCCAAATGGGAAAAAAACAACTTTTACCTCCGCGATGTACTTAGCAACCTTCATGATAGTGTAATTGATGACATTCTAATGAGGTTGCCTTTACGAAATGTTGTGAGGACAAGCATCTTATCAAGGAATGGAGATATAATTGGCATAGACTTCCGCAACAGAAATTTGATCAAACACTTTGGAAAACAACAGAGGACTTGATGTGACCTACAACTCGATTTACTAAAATTGTCTATCACTTCTTGGCAGTTCATGTAGGACCAATTACTAAATTTACTCTTGACATTCGTGATCTAATAACATGTCCTAATATTGATCATTTGATATATTTCCTCTCTAGGAATGACATTCAACATCTTGTCTTTTAACCTCCGTTTAGGAGTAAGCCATATGAATTGCCTTCTGCATATTTTACATGTTCACAATTGAGGTATCTGTTTCTCAAAGACTTTCAAATACGTCCCCCTCCGTTCTTTGAGGGATTGATTAGTTTAATTATCTTAGCACTATATGAAGTCACAATTTCTTCTGAATTTCTTGGAAGTATAATTTCAAATTGCCCGTTGCTTGAGAATTTGGTGGTGCAACATAACGCTATTACAAATCACATTGAAATTAGTGCTCCCAAGCTAAGGCCATTTATCTTCACTGGCAATATAAAGTTTTTACATTTAAAGAATGTCCCTCTTCTTTCCAAATTTTCATATGAGCCTACAAAATTTTCGGGAGAGGTAGAACATGATATTGACAAGATTTTTGAGTCTATTCCTGCTCTCGAGAATTTGTGCTGGAGTCACGAGTCTGTTCAGGTAATATAGCTTCATAACTTGCATTTTCATAACTTTGAGTCATCCTGATTTTCGACATTTTCTTCCTAGGACGTGTATATTGGACCAACTCCCTTATGCTCTTTTCTGTATTAAACACCTTCACATATCTTGCATTAATCTAGGATTACTCTTTGATCTTTCGTTTGCTCTTTGCTTGATAAGAAGCTTTCCAAATTTAGAAGAAATTGAAATCGAGGTTGTTAATTATGTTTACTTTTCTCTCTGTTTTTCCTATGTATTTGACTTTCTTATGATCTTTAATTTTAAATCAAGGCTGATGGTTTTTCTCAATCTTTCTTAGAACTATTTTGAACATGCGCGCCGGGAGTCTGTTGATGATATTCCTGAAAGTTTCTTGGATATGACATTTAATCAACGAGGACAGTAGAAATTTATGATGTAACAGGAGTAGCAGCTGAAATGCAGCTTATCCAGGTTTTATTGTCCGAGTCTCCAACGCTGGTCAGAATGATAACCAAGCCTTGTGAAACAGAAGATAAAGAATCTTTTAAAGTACTCACTGAGGTAACAAAATTTCAGCGTACATCATCTAAAGCAGAAGTTGTGTATAGTGTAGAATAGAATCCATATTACGATCCTGTTTGATCTTAACTAGTCTTTAATCAGATCATAATCTTTTGCTAAAATAATTTGAAATCGTAAAAAGAATGTTGATACAACAGATAGGCTGTTATTTTGTATTTGCCAGTGTGAATACCATCAGTTTGTGAACATAAGTGAATCTGGATGTATGTTTTTGATTAATCTATTTCAATGTCTGTTCTTTGAATGATATATGGAATGACTCTTTGGTTGGTTATTGATAATTTTAATATATTCATTGTGGTCCTCATGGTCATTGTGCATTGTTTTTTATTTGATATGATCATGACATGAGTTGAGCGTAAATGGAATAGTGAGGATTCATATAGTCGATTTCAACTAGTTGTTTTATGAGAGCCAACGACGTTGTTGACACATTGTTCTGAATAGTGAGAAAGAATGAAATTCGATCAAATCCCTTGATCTTAATGGTTAGTAAACAATACCCCTTTGGAATGGAAAATATAATCCCTTTCAACAACATTTTTAATGAGAATTATGATACAATATACATTATAAGCTGAAATTGAATTTCAACAATATTATTCTTACAAGCTCATTGTTACAATTCCACATCCCAGAAAAATTATCACTTAAAATAGGAAAAGGGGAAAAAAAGGTGTGGGGGTGGGGGTGGGGTCAGTTGTTCATAAATAAGTCTTTTCCCTATTTAGTCAGAATATATACCATTCCTTTATGCAGCTTCCATATAATCATATATATACAAGCTCAATCGAACCCTATTGCAGACAAAAAGTCTGGTATATAAGTGGAGGAGAGTAATGGGGCGGGTCTATCCTCCACTGAGTTATGAATCGTGCACTATTGACCCTCGAGGACTTCTTGGTTATAAAAAAAGAACAAAAAAAAAGCTCCATAATATACAACAATATTACTTGATCATTCTATCTTAGATGCCCTTTTTTTTTGTTTCATCTAATTGATTATCTTTCATAATCTAAAGCAGAAGTTGTGTATCTTGTTGATTAGTATCGTTATCACAATCCTTCTTAATCTTTAGTTAAAATGTTTTGGAAGTACAAACAGAAACGAGACCTTCGGTTGATGGAGTAGTAAGGCTGTGTTTTGCCTTTTCTTTTAAGGTACTAAAAATATTTTATCTGCTTGGAAACATAGAATTGTGAATGTTTCGAATACTCTGTTTGGTAACAGAGATGGTTTTTACA-TTCATGCTTGTTCTTAAATGATGTATGATTTGAGACTTTGGTTGTTTATTTCAAA</genome_strand>
        <mrna_strand>TCGAGATGTTGTAAGAGTTAGTACACTTTCAAAGGACTGGCAATATAATTTCTAGAGAATTCCACATGTGAAATTTTATCAAACAGTGTGGAAAACACCCGAGGACTTGACATCCCCTGCCATTGGATTTATTCCGATTCTTGATAGTTTGCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAGTCTAATAATGTGTCCTAATGTTGATCGTCTAATTTTTTCCCTCGACATTGATCACATTCAACATTTTGTCCTTGAAATTCCATTTACTTATCCTCCATTTAGGTTGCCCAACTTCTTTTTT-ATTGTTCAGCATTGAGGCATTTCTATCTCATGGGATGTGAAATACAACTTTCATGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATCTGTATCGTTATCTTCTGATACGTTTGAAAATTTGATCTCTAATTGCCCGTTGCTTGAGGATTTGGTGCTAAAAGACACAGACAATTCGTACCTCATTATTAGTAATTCTCTTAAGCTAAGGTCATTTGTCTTTCGTGGCGATATACAATTGATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCGCCTAGAGAATTAGTTCTAGAGGACGAAGATGATTTTGTCAATATTTTTTCGTCTATTGTTGCTCTCCAGTGTTTCAGCATGGATCTTTTTGAG................................................................................................TTCGATAATGGAACAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCTGAAATGCCTATTCATGTCTTGGATTACTCTTGGAGAGTTTTTTAAGCTTTCGTTTGCTCTTTGCATTATAAAGAGCTCTCCAAATTTGGAAGAAATTGAAATTAAG............................................................................................GAATTTTTCTTTAGTGATGGAGATTATTTCGAATCTGTGTCCCAGGAGGTTGTTGATGAGATTCTTCCAAGCTTTTCGGATATCACATTTAATCATCTAAGGACAGTTAAGTTTTATGATATACCATTAGAAGAGGTTGAAATACAGCTTATCAAGGTTTTATTGGCAAAGCCTCCAACATTGGTGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTATCAAATCTCTCAACTTACTCGCGGAGATAACAAAGTTTTAACAGGCACCATCTAAAGCAGAAGTTGTGTATCTTTTTTATTAGTATCGTTATCACAATCCTTCCTAATCTTTGGTTAAAATATTTTTGAAGTACAAACAGAAACGAGACATTTGGTTGATGGAGTAACAAGACTGTGTTTTGCCTTCGCTTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATAAAGATTTTATCTGCTTGGAAGCATAGAATTGTATATGTTTTGTATACTCTGTTTGGGAACAGAGATGGTTTTTACATTTCATGGATGCTCTTAAATGATATATGATTTGAGTCTTTGGTTGTTTATTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5861" PGL_stop="5450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5861" e_stop="5450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="5861" e_stop="5450" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5861" stop="5450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTTTTTAGCAGTCAAAAAGAGAGAAAAAGAGCAGATTTTCGCAGTCAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</gDNA_template>
            <first_frame> R  V  F  S  S  Q  K  E  R  K  R  A  D  F  R  S  Q  N  S  A  L  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  </first_frame>
            <second_frame>  E  F  L  A  V  K  K  R  E  K  E  Q  I  F  A  V  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  A  C  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T  *  I  L  V </second_frame>
            <third_frame>   S  F  *  Q  S  K  R  E  K  K  S  R  F  S  Q  S  K  F  S  P  N  S  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  P  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0028J22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="47985" PGL_stop="38653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47985" e_stop="47899"/>
            <exon e_start="47782" e_stop="47719"/>
            <exon e_start="40612" e_stop="40563"/>
            <exon e_start="38975" e_stop="38653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.716" e_score="0.908"/>
          <exon-intron don_prob="0.857" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="47985" e_stop="47899" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.716">
            <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47782" e_stop="47719" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40612" e_stop="40563" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.916">
            <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="38975" e_stop="38653" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47985" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG : TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA : GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG : AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAAAGAGAATG</gDNA_template>
            <first_frame> Q  G  D  A  K  G  S  A  R  V  G  D  A  S  V  R  K  D  V  V  G  C  Q  L  G  S  N  T  Q  :  F  M  Y  E  G  S  F  A  Q  G  L  D  Y  G  N  S  Q  L  *  I  L   : R  *  T  K  N  F  G  C  I  P  K  K  K  L  N  T  *  :  N  S  G  *  S  F  A  G  T  R  C  Q  G  F  S  S  C  *  Y  L  C  *  T  V  N  N  I  V  G  T  C  L  R  G  L  D  A  *  R  I  P  T  N  F  C  K  Y  I  C  L  L  Y  F  D  F  N  S  L  P  L  C  T  Y  H  L  V  L  N  V  T  W  N  K  P  S  I  I  V  C  T  A  P  K  C  P  N  I  W  I  C  S  I  L  L  V  F  F  D  I  D  F  P  K  K  K  R  E   </first_frame>
            <second_frame>  R  E  M  P  R  D  L  Q  G  L  V  M  H  L  L  E  K  M  *  L  D  V  S  L  G  P  I  R  S :   S  C  M  K  V  L  L  H  K  A  *  T  M  E  T  P  N  Y  E  F  *  :  D  E  Q  R  T  L  D  A  Y  P  K  K  S  *  I  H  R :   T  V  V  S  L  L  L  V  Q  D  A  R  V  S  L  L  A  D  I  C  V  K  L  S  T  T  L  L  V  L  V  *  E  D  *  T  P  K  G  F  L  L  I  S  A  N  I  F  V  C  Y  T  L  I  L  I  L  F  R  S  V  H  T  I  W  F  *  M  S  L  G  T  N  H  L  L  *  F  V  Q  H  L  S  A  Q  T  F  G  S  V  L  F  F  *  C  F  L  I  L  I  F  Q  K  K  K  E  N  </second_frame>
            <third_frame>   G  R  C  Q  G  I  C  K  G  W  *  C  I  C  *  K  R  C  S  W  M  S  A  W  V  Q  Y  A   : V  H  V  *  R  F  F  C  T  R  L  R  L  W  K  L  P  I  M  N  F  K :   M  N  K  E  L  W  M  H  T  Q  K  K  A  E  Y  I   : E  Q  W  L  V  F  C  W  Y  K  M  P  G  F  L  F  L  L  I  S  V  L  N  C  Q  Q  H  C  W  Y  L  F  E  R  T  R  R  L  K  D  S  Y  *  F  L  Q  I  Y  L  F  A  I  L  *  F  *  F  S  S  A  L  Y  I  P  F  G  F  E  C  H  L  E  Q  T  I  Y  Y  S  L  Y  S  T  *  V  P  K  H  L  D  L  F  Y  S  S  S  V  F  *  Y  *  F  S  K  K  K  K  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47771" stop="47719"/>
                    <exon start="40612" stop="40563"/>
                    <exon start="38975" stop="38848"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFCTRLRLWKLPIMNFKMNKELWMHTQKKAEYIEQWLVFCWYKMPGFLFLLISVLNCQQHCWYLFERTRRLKDSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38861" stop="38655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPTNFCKYICLLYFDFNSLPLCTYHLVLNVTWNKPSIIVCTAPKCPNIWICSILLVFFDIDFPKKKRE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="56788" PGL_stop="56112"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56788" e_stop="56263"/>
            <exon e_start="56174" e_stop="56112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="0.947"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="56788" e_stop="56263" e_length="526"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="56262" i_stop="56175" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.810">
            <gDNA_exon_boundary e_start="56174" e_stop="56112" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56788" stop="56263"/>
              <exon start="56174" stop="56112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGACAATGATGGTATCCAATACACATGTAACAAGATGAATGCATTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGGGGTATACAAGCATACTGTGAATTTGGGTCAAGAAAAATGTAGTTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAATTGCTTGAACATGGATGCATCATAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGCAAAAACCCAATGGTTAAACCACCTGAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAACAGAAAAAGAGAAATTGGTGAAGTGAGAAAATCTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCAATTTGCAAAGGACCAAATCATAACAAGATAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAG : TCCACCACTGAAAAAAAGAGGGATAAAGATCACTATGAAAGAGTAAGCACCAGTAAGACTGGT</gDNA_template>
            <first_frame> S  N  D  N  D  G  I  Q  Y  T  C  N  K  M  N  A  L  Q  H  *  M  E  W  *  C  W  I  *  S  V  R  R  G  I  Q  A  Y  C  E  F  G  S  R  K  M  *  L  Q  I  M  G  I  K  R  Y  P  M  C  T  W  Y  S  S  N  E  L  L  E  H  G  C  I  I  S  N  I  *  L  V  *  K  R  H  I  Y  E  D  I  F  S  F  H  S  T  S  P  K  H  G  N  V  A  *  K  Q  K  P  N  G  *  T  T  *  G  K  T  N  A  W  *  V  T  K  E  Q  K  K  R  N  W  *  S  E  K  I  W  K  V  A  K  N  G  D  S  N  D  M  F  N  L  Q  R  T  K  S  *  Q  D  K  L  S  K  K  S  *  T  *  V  Y  T  N  T  H  S  R   : V  H  H  *  K  K  E  G  *  R  S  L  *  K  S  K  H  Q  *  D  W  </first_frame>
            <second_frame>  P  M  T  M  M  V  S  N  T  H  V  T  R  *  M  H  C  N  I  E  W  N  G  D  V  G  F  E  V  L  E  G  V  Y  K  H  T  V  N  L  G  Q  E  K  C  S  C  R  S  W  E  L  K  G  I  P  C  A  H  G  I  A  A  M  N  C  L  N  M  D  A  S  *  A  I  S  S  W  Y  R  K  D  T  Y  M  K  T  Y  S  H  F  I  Q  P  V  P  N  M  E  M  W  P  E  S  K  N  P  M  V  K  P  P  E  A  R  Q  M  P  G  R  S  P  K  N  R  K  R  E  I  G  E  V  R  K  S  G  K  L  P  R  M  G  T  V  M  T  C  S  I  C  K  G  P  N  H  N  K  I  N  C  P  K  N  P  K  P  K  S  T  P  T  P  T  Q  E  :  S  T  T  E  K  K  R  D  K  D  H  Y  E  R  V  S  T  S  K  T  G </second_frame>
            <third_frame>   Q  *  Q  *  W  Y  P  I  H  M  *  Q  D  E  C  I  A  T  L  N  G  M  V  M  L  D  L  K  C  *  K  G  Y  T  S  I  L  *  I  W  V  K  K  N  V  V  A  D  H  G  N  *  K  V  S  H  V  H  M  V  *  Q  Q  *  I  A  *  T  W  M  H  H  K  Q  Y  L  V  G  I  E  K  T  H  I  *  R  H  I  L  I  S  F  N  Q  S  Q  T  W  K  C  G  L  K  A  K  T  Q  W  L  N  H  L  R  Q  D  K  C  L  V  G  H  Q  R  T  E  K  E  K  L  V  K  *  E  N  L  E  S  C  Q  E  W  G  Q  *  *  H  V  Q  F  A  K  D  Q  I  I  T  R  *  I  V  Q  K  I  L  N  L  S  L  H  Q  H  P  L  K  S :   P  P  L  K  K  R  G  I  K  I  T  M  K  E  *  A  P  V  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56568" stop="56263"/>
                    <exon start="56174" stop="56112"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISSWYRKDTYMKTYSHFIQPVPNMEMWPESKNPMVKPPEARQMPGRSPKNRKREIGEVRKSGKLPRMGTVMTCSICKGPNHNKINCPKNPKPKSTPTPTQESTTEKKRDKDHYERVSTSKTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="75084" PGL_stop="70229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75084" e_stop="74902"/>
            <exon e_start="74589" e_stop="74468"/>
            <exon e_start="72733" e_stop="72630"/>
            <exon e_start="71891" e_stop="71806"/>
            <exon e_start="71402" e_stop="71293"/>
            <exon e_start="71197" e_stop="71165"/>
            <exon e_start="70497" e_stop="70229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.039" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="75084" e_stop="74902" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.039" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74901" i_stop="74590" i_length="312"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74589" e_stop="74468" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74467" i_stop="72734" i_length="1734"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72733" e_stop="72630" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.989">
            <gDNA_intron_boundary i_start="72629" i_stop="71892" i_length="738"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="71806" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="71805" i_stop="71403" i_length="403"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71402" e_stop="71293" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.950">
            <gDNA_intron_boundary i_start="71292" i_stop="71198" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71197" e_stop="71165" e_length="33"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="71164" i_stop="70498" i_length="667"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="70497" e_stop="70229" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75084" stop="74902"/>
              <exon start="74589" stop="74468"/>
              <exon start="72733" stop="72630"/>
              <exon start="71891" stop="71806"/>
              <exon start="71402" stop="71293"/>
              <exon start="71197" stop="71165"/>
              <exon start="70497" stop="70229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340396" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCAGTGGACATGTTGATAGTTTGGAGGAACTTGAGGAAAAGTTTTCTACAGCTTTTGATGTTTATGTCCATGTTGGTTCCTATGTTCCTCCGCTCTTTGGTATTCACGAAAATGCAGCACATTTGGCAGTTGTAGGTCGTGGTAGACGCGTTGCAAATGCCAAATACTCAGATTGGGTTAG : GTAGGCAAAGGAAACAATTGGAGAAGCTGAGGCCACCTTCTGTCAACGAGCTCCTGTTGTCAAACAATGGCGATCAGATCTTAGAGGGTTGTTTGACTAATTTTTTTGTTGTTTGCCACAAG : GATGTTAATGGTGATAATCACAAGTCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGA : CATATGCTCAAGAAACAAAATCCCAGTCAGAGAAATTGCACCTGCATGGTCAGAGCGTGAAACGTGGTCAGAAGCATTCATTACAA : GTAGCTTGAGGCTATTGCAGCATGTGGAAGTTATTCAAGCTCCTAGTTCGTGGGGATCACTTGATACACAAACTTGGACTGACGTATCTTGGGAGGAGAAGCGATTTGAG : AATGCTCCTGGACGGATCACTGCATTCATCCAG : AAGGAGGTCATGGAAATGGCAAGCACGGAAGGGTATCCAGTTTCTCTATTTAATGACCGGTAGATCTTCCCCTCATATAATATGTGCTAATTGTGGTACGATTGGAAAGGTCGTATCTTAAAAACACGATGTTTTAGCCTGCGATATCTTCCCTTCACACAACCCTGTTACATTTATTCTGGTGTACAATTGACTTTATGTTGAATCATTTGATTATAAGGAGAACCGTAATTAACTCAAACAAAGGTGAATAGTTCAATAACAGTTGT</gDNA_template>
            <first_frame> C  Q  W  T  C  *  *  F  G  G  T  *  G  K  V  F  Y  S  F  *  C  L  C  P  C  W  F  L  C  S  S  A  L  W  Y  S  R  K  C  S  T  F  G  S  C  R  S  W  *  T  R  C  K  C  Q  I  L  R  L  G  *  :  V  G  K  G  N  N  W  R  S  *  G  H  L  L  S  T  S  S  C  C  Q  T  M  A  I  R  S  *  R  V  V  *  L  I  F  L  L  F  A  T  R :   M  L  M  V  I  I  T  S  L  Q  F  Q  L  N  C  R  L  P  L  *  E  M  V  S  F  Q  A  L  Y  A  K  *  F  L   : T  Y  A  Q  E  T  K  S  Q  S  E  K  L  H  L  H  G  Q  S  V  K  R  G  Q  K  H  S  L  Q  :  V  A  *  G  Y  C  S  M  W  K  L  F  K  L  L  V  R  G  D  H  L  I  H  K  L  G  L  T  Y  L  G  R  R  S  D  L  R :   M  L  L  D  G  S  L  H  S  S  R :   R  R  S  W  K  W  Q  A  R  K  G  I  Q  F  L  Y  L  M  T  G  R  S  S  P  H  I  I  C  A  N  C  G  T  I  G  K  V  V  S  *  K  H  D  V  L  A  C  D  I  F  P  S  H  N  P  V  T  F  I  L  V  Y  N  *  L  Y  V  E  S  F  D  Y  K  E  N  R  N  *  L  K  Q  R  *  I  V  Q  *  Q  L  </first_frame>
            <second_frame>  V  S  G  H  V  D  S  L  E  E  L  E  E  K  F  S  T  A  F  D  V  Y  V  H  V  G  S  Y  V  P  P  L  F  G  I  H  E  N  A  A  H  L  A  V  V  G  R  G  R  R  V  A  N  A  K  Y  S  D  W  V  R :   *  A  K  E  T  I  G  E  A  E  A  T  F  C  Q  R  A  P  V  V  K  Q  W  R  S  D  L  R  G  L  F  D  *  F  F  C  C  L  P  Q   : G  C  *  W  *  *  S  Q  V  Y  S  F  N  *  I  A  D  C  P  Y  K  R  W  C  P  S  R  R  C  T  P  S  N  S  *  :  H  M  L  K  K  Q  N  P  S  Q  R  N  C  T  C  M  V  R  A  *  N  V  V  R  S  I  H  Y  K :   *  L  E  A  I  A  A  C  G  S  Y  S  S  S  *  F  V  G  I  T  *  Y  T  N  L  D  *  R  I  L  G  G  E  A  I  *   : E  C  S  W  T  D  H  C  I  H  P   : E  G  G  H  G  N  G  K  H  G  R  V  S  S  F  S  I  *  *  P  V  D  L  P  L  I  *  Y  V  L  I  V  V  R  L  E  R  S  Y  L  K  N  T  M  F  *  P  A  I  S  S  L  H  T  T  L  L  H  L  F  W  C  T  I  D  F  M  L  N  H  L  I  I  R  R  T  V  I  N  S  N  K  G  E  *  F  N  N  S  C </second_frame>
            <third_frame>   S  V  D  M  L  I  V  W  R  N  L  R  K  S  F  L  Q  L  L  M  F  M  S  M  L  V  P  M  F  L  R  S  L  V  F  T  K  M  Q  H  I  W  Q  L  *  V  V  V  D  A  L  Q  M  P  N  T  Q  I  G  L   : G  R  Q  R  K  Q  L  E  K  L  R  P  P  S  V  N  E  L  L  L  S  N  N  G  D  Q  I  L  E  G  C  L  T  N  F  F  V  V  C  H  K  :  D  V  N  G  D  N  H  K  S  T  V  S  I  E  L  Q  T  A  P  I  R  D  G  V  L  P  G  V  V  R  Q  V  I  L  D :   I  C  S  R  N  K  I  P  V  R  E  I  A  P  A  W  S  E  R  E  T  W  S  E  A  F  I  T   : S  S  L  R  L  L  Q  H  V  E  V  I  Q  A  P  S  S  W  G  S  L  D  T  Q  T  W  T  D  V  S  W  E  E  K  R  F  E  :  N  A  P  G  R  I  T  A  F  I  Q  :  K  E  V  M  E  M  A  S  T  E  G  Y  P  V  S  L  F  N  D  R  *  I  F  P  S  Y  N  M  C  *  L  W  Y  D  W  K  G  R  I  L  K  T  R  C  F  S  L  R  Y  L  P  F  T  Q  P  C  Y  I  Y  S  G  V  Q  L  T  L  C  *  I  I  *  L  *  G  E  P  *  L  T  Q  T  K  V  N  S  S  I  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74947" stop="74902"/>
                    <exon start="74589" stop="74468"/>
                    <exon start="72733" stop="72630"/>
                    <exon start="71891" stop="71806"/>
                    <exon start="71402" stop="71293"/>
                    <exon start="71197" stop="71165"/>
                    <exon start="70497" stop="70435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVVDALQMPNTQIGLGRQRKQLEKLRPPSVNELLLSNNGDQILEGCLTNFFVVCHKDVNGDNHKSTVSIELQTAPIRDGVLPGVVRQVILDICSRNKIPVREIAPAWSERETWSEAFITSSLRLLQHVEVIQAPSSWGSLDTQTWTDVSWEEKRFENAPGRITAFIQKEVMEMASTEGYPVSLFNDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="93907" PGL_stop="105492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93907" e_stop="94617"/>
            <exon e_start="94714" e_stop="94878"/>
            <exon e_start="94971" e_stop="95385"/>
            <exon e_start="105354" e_stop="105492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.909"/>
          <exon-intron don_prob="0.912" acc_prob="0.997" e_score="0.945"/>
          <exon-intron don_prob="0.860" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.885"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="93907" e_stop="94617" e_length="711"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94618" i_stop="94713" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="94714" e_stop="94878" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94879" i_stop="94970" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="94971" e_stop="95385" e_length="415"/>
          </exon>
          <intron i_serial="3" don_prob="0.860" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95386" i_stop="105353" i_length="9968"/>
          </intron>
          <exon e_serial="4" e_score="0.885">
            <gDNA_exon_boundary e_start="105354" e_stop="105492" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93907" stop="94617"/>
              <exon start="94714" stop="94878"/>
              <exon start="94971" stop="95385"/>
              <exon start="105354" stop="105492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGGCAATATATTTGCTGGAGAATTCCACATATGAAGTTTGATCAAACAGTGTGGAAAATACCCGAGGACTTGACATCCCCTACCATTGGATTTATTCCTATTCTTGATTGTTTCCTCAGGTTTCATAGAGGAATAATATTGAACGTCACCCTCAATATTATTAATCTAATAGTGTGTCCTAATGTTGATCGTTTGATTTTTTCCCTCAACACTGATCACATTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCCTCACAAGTTGCCAAACTTTTTTTTTGATTGTTCAGCATTAAGGCATTTGTATCTCAAGGAATGTGAAATACAACTTCCTTGTTTCTTTAAGGGATTTAATAAGTTGATTAGGGTAATATTGAAATCTGTCACGTTATCTTTTGATATGTTTGAAAGTTTGATCTCTAATTGCCCGTTGTTTGAGGATTTGGTGCTAAAAGACATAGTTAATCCGTACCTCATGAGTATTAATGCTCCTAAGCTAAGGTCATTTGTCTTTCGTGGCGCTATACAATTAATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCACCTAGAGAATTAGTTTTAGAGGACGAAGATGATTTTGTCAATTTTTTTCGTCTATTCCTGCTCTCGAGTGCTTCAGCTGGGATCTTTTTGAG : GTCGATAATGGATCAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCAGAAACGCCTGTTCATGTCTTGGATTACTCTTGGAGAGTTTTTTGAGCTTTCGTTTGCTCTTTGCATTATAAAGATCTCTCCAAATTAGGAAGAAAATGAAATTAAG : GAATGTATCCTTAGTGATGGAGATTATTTCGAATCTGTGCCCCAGGAGGTTGTTGATGAGATTCTTGCGAGCTTTTTGGATATCACATTTAATCATCTGAGGACAGTTAAGCTTTATGATATACCATTAGAAGAGGTTGAAATGCAGCTTATCAAGGTTTTATTAGAAAAGTCTCCAGCACTGGCGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTAACAAATCTCTCAACGTACTTGCGGAGATAACAAAGTTTCAACGGGCATCATCTAAAGCAGAAGTTGTGTATCTTTTTGATTATTATCGTTATCACAATTCTTCTTAATATTTGGCTAAAATATTTTGGTAGTACAAACAGAAACGAGACGTTTGGTTGATGGAGTAGCAAGGCTGTGTTTTGCCTTTGCTTTAAG : GTACTAAAAATATTTTATCTGCTTGGAAACATAGAATTGTGAATGTTTCGAATACTCTGTTTGGTAACAGAGATGGTTTTTACATTCATGCTTGTTCTTAAATGATGTATGATTTGAGACTTTGGTTGTTTATTTCAAA</gDNA_template>
            <first_frame> L  R  C  C  *  S  *  Y  T  F  E  G  L  A  I  Y  L  L  E  N  S  T  Y  E  V  *  S  N  S  V  E  N  T  R  G  L  D  I  P  Y  H  W  I  Y  S  Y  S  *  L  F  P  Q  V  S  *  R  N  N  I  E  R  H  P  Q  Y  Y  *  S  N  S  V  S  *  C  *  S  F  D  F  F  P  Q  H  *  S  H  S  T  F  C  P  *  T  S  I  Y  L  S  S  S  Q  V  A  K  L  F  F  *  L  F  S  I  K  A  F  V  S  Q  G  M  *  N  T  T  S  L  F  L  *  G  I  *  *  V  D  *  G  N  I  E  I  C  H  V  I  F  *  Y  V  *  K  F  D  L  *  L  P  V  V  *  G  F  G  A  K  R  H  S  *  S  V  P  H  E  Y  *  C  S  *  A  K  V  I  C  L  S  W  R  Y  T  I  N  T  S  *  K  C  P  C  S  F  Q  C  S  V  C  T  *  R  I  S  F  R  G  R  R  *  F  C  Q  F  F  S  S  I  P  A  L  E  C  F  S  W  D  L  F  E  :  V  D  N  G  S  T  K  V  I  P  T  R  L  P  S  V  L  N  C  Q  K  R  L  F  M  S  W  I  T  L  G  E  F  F  E  L  S  F  A  L  C  I  I  K  I  S  P  N  *  E  E  N  E  I  K  :  E  C  I  L  S  D  G  D  Y  F  E  S  V  P  Q  E  V  V  D  E  I  L  A  S  F  L  D  I  T  F  N  H  L  R  T  V  K  L  Y  D  I  P  L  E  E  V  E  M  Q  L  I  K  V  L  L  E  K  S  P  A  L  A  K  M  V  I  K  P  R  Q  M  E  T  N  K  S  L  N  V  L  A  E  I  T  K  F  Q  R  A  S  S  K  A  E  V  V  Y  L  F  D  Y  Y  R  Y  H  N  S  S  *  Y  L  A  K  I  F  W  *  Y  K  Q  K  R  D  V  W  L  M  E  *  Q  G  C  V  L  P  L  L  *   : G  T  K  N  I  L  S  A  W  K  H  R  I  V  N  V  S  N  T  L  F  G  N  R  D  G  F  Y  I  H  A  C  S  *  M  M  Y  D  L  R  L  W  L  F  I  S   </first_frame>
            <second_frame>  *  D  V  V  R  V  S  T  L  S  K  D  W  Q  Y  I  C  W  R  I  P  H  M  K  F  D  Q  T  V  W  K  I  P  E  D  L  T  S  P  T  I  G  F  I  P  I  L  D  C  F  L  R  F  H  R  G  I  I  L  N  V  T  L  N  I  I  N  L  I  V  C  P  N  V  D  R  L  I  F  S  L  N  T  D  H  I  Q  H  F  V  L  K  L  P  F  T  Y  P  P  H  K  L  P  N  F  F  F  D  C  S  A  L  R  H  L  Y  L  K  E  C  E  I  Q  L  P  C  F  F  K  G  F  N  K  L  I  R  V  I  L  K  S  V  T  L  S  F  D  M  F  E  S  L  I  S  N  C  P  L  F  E  D  L  V  L  K  D  I  V  N  P  Y  L  M  S  I  N  A  P  K  L  R  S  F  V  F  R  G  A  I  Q  L  I  H  L  E  N  V  P  V  L  S  N  V  L  Y  A  P  R  E  L  V  L  E  D  E  D  D  F  V  N  F  F  R  L  F  L  L  S  S  A  S  A  G  I  F  L  R :   S  I  M  D  Q  L  K  L  Y  Q  Q  G  F  H  Q  F  L  T  V  R  N  A  C  S  C  L  G  L  L  L  E  S  F  L  S  F  R  L  L  F  A  L  *  R  S  L  Q  I  R  K  K  M  K  L  R :   N  V  S  L  V  M  E  I  I  S  N  L  C  P  R  R  L  L  M  R  F  L  R  A  F  W  I  S  H  L  I  I  *  G  Q  L  S  F  M  I  Y  H  *  K  R  L  K  C  S  L  S  R  F  Y  *  K  S  L  Q  H  W  R  K  W  *  S  S  L  V  K  W  K  L  T  N  L  S  T  Y  L  R  R  *  Q  S  F  N  G  H  H  L  K  Q  K  L  C  I  F  L  I  I  I  V  I  T  I  L  L  N  I  W  L  K  Y  F  G  S  T  N  R  N  E  T  F  G  *  W  S  S  K  A  V  F  C  L  C  F  K  :  V  L  K  I  F  Y  L  L  G  N  I  E  L  *  M  F  R  I  L  C  L  V  T  E  M  V  F  T  F  M  L  V  L  K  *  C  M  I  *  D  F  G  C  L  F  Q  </second_frame>
            <third_frame>   E  M  L  L  E  L  V  H  F  R  R  T  G  N  I  F  A  G  E  F  H  I  *  S  L  I  K  Q  C  G  K  Y  P  R  T  *  H  P  L  P  L  D  L  F  L  F  L  I  V  S  S  G  F  I  E  E  *  Y  *  T  S  P  S  I  L  L  I  *  *  C  V  L  M  L  I  V  *  F  F  P  S  T  L  I  T  F  N  I  L  S  L  N  F  H  L  L  I  L  L  T  S  C  Q  T  F  F  L  I  V  Q  H  *  G  I  C  I  S  R  N  V  K  Y  N  F  L  V  S  L  R  D  L  I  S  *  L  G  *  Y  *  N  L  S  R  Y  L  L  I  C  L  K  V  *  S  L  I  A  R  C  L  R  I  W  C  *  K  T  *  L  I  R  T  S  *  V  L  M  L  L  S  *  G  H  L  S  F  V  A  L  Y  N  *  Y  I  L  K  M  S  L  F  F  P  M  F  C  M  H  L  E  N  *  F  *  R  T  K  M  I  L  S  I  F  F  V  Y  S  C  S  R  V  L  Q  L  G  S  F  *   : G  R  *  W  I  N  *  S  Y  T  N  K  A  S  I  S  S  *  L  S  E  T  P  V  H  V  L  D  Y  S  W  R  V  F  *  A  F  V  C  S  L  H  Y  K  D  L  S  K  L  G  R  K  *  N  *   : G  M  Y  P  *  *  W  R  L  F  R  I  C  A  P  G  G  C  *  *  D  S  C  E  L  F  G  Y  H  I  *  S  S  E  D  S  *  A  L  *  Y  T  I  R  R  G  *  N  A  A  Y  Q  G  F  I  R  K  V  S  S  T  G  E  N  G  N  Q  A  S  S  N  G  N  *  Q  I  S  Q  R  T  C  G  D  N  K  V  S  T  G  I  I  *  S  R  S  C  V  S  F  *  L  L  S  L  S  Q  F  F  L  I  F  G  *  N  I  L  V  V  Q  T  E  T  R  R  L  V  D  G  V  A  R  L  C  F  A  F  A  L  R :   Y  *  K  Y  F  I  C  L  E  T  *  N  C  E  C  F  E  Y  S  V  W  *  Q  R  W  F  L  H  S  C  L  F  L  N  D  V  *  F  E  T  L  V  V  Y  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93911" stop="94617"/>
                    <exon start="94714" stop="94843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVVRVSTLSKDWQYICWRIPHMKFDQTVWKIPEDLTSPTIGFIPILDCFLRFHRGIILNVTLNIINLIVCPNVDRLIFSLNTDHIQHFVLKLPFTYPPHKLPNFFFDCSALRHLYLKECEIQLPCFFKGFNKLIRVILKSVTLSFDMFESLISNCPLFEDLVLKDIVNPYLMSINAPKLRSFVFRGAIQLIHLENVPVLSNVLYAPRELVLEDEDDFVNFFRLFLLSSASAGIFLRSIMDQLKLYQQGFHQFLTVRNACSCLGLLLESFLSFRLLFAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94861" stop="94878"/>
                    <exon start="94971" stop="95297"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENEIKECILSDGDYFESVPQEVVDEILASFLDITFNHLRTVKLYDIPLEEVEMQLIKVLLEKSPALAKMVIKPRQMETNKSLNVLAEITKFQRASSKAEVVYLFDYYRYHNSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 10648 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2129 bytes was the average size of a spliced alignment
$ 10648 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2129 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 32 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-23 00:41:25
-->
