<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-06 21:55:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345617" ref_strand="+" ref_description="SGN-U345617        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G17090.1 | Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana); similar to protein phosphatase 2C (GI:3608412) (Mesembryanthemum crystallinum); contains Pfam PF00481 : Protein phosphatase 2C domain; | chr3:5826809-5829639 FORWARD | Aliases: K14A17.4 (evalue: 8e-42, score=167) genbank/nr: catalytic/(evalue: 6e-40, score=167)">
      <seq>tgttaatagcagccgacaaaattaagaatgaggcacattctatttcgtgttcctcctccaaccaacacctcccacttccctctgccccccttacccccaaactacaatcctctacatatacatatctgtatctaactcttagtattgcttcaagaaagtttgattcaacttgtaaattttcaattttgaaagttgggtacttgtttttttttgaattggggttagctccatgtgggattcttgaattttgatttgatgaatttccttccaagatgtttgagttacagtgaatgtagtggtggagctggaagaagtgaaattaggggtggtgaaagttccaatggtggatttgggaaagatgggttgttgtggtttcatgatattgggaattgtgggagtggggaatattccatggctattgtgcaagctaatcaggtcttagaggatcagagccagattgagtctggtccatttggaacttttgttggagtctatgatggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="2665" stop="3769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2965" g_stop="3469" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U345617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2965" e_stop="3469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATG</genome_strand>
        <mrna_strand>TGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331075" ref_strand="+" ref_description="SGN-U331075        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G17090.1 | Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana); similar to protein phosphatase 2C (GI:3608412) (Mesembryanthemum crystallinum); contains Pfam PF00481 : Protein phosphatase 2C domain; | chr3:5826809-5829639 FORWARD | Aliases: K14A17.4 (evalue: 5e-106, score=380) genbank/nr: gi|7670033|dbj|BAA94987.1| protein phosphatase 2C-like protein [Arabidopsis thaliana](evalue: 3e-104, score=380)">
      <seq>gtttgtgatcacttatttcgacatttccaagcaatatcagctgaaggaaatggtgtagtcacagaggagacaattcaaagggcctttcttgagacagagagagggtttacttctgttgtttcggaaaattggcattctcgaccacaactagcaacagtgggggcatgctgcctggttggagctatatatcagcagacactctttgtagcaaatcttggtgactctcgtgtagtccttggaaagaaggttggaaacactggagaaattgctgccatgcagctatcaacggagcataatgccaatattgagtctgttaggtgggagcaaaaagacttgcatccaaatgatcctcaaattgttgttcttagacatggtgtttggagggtaaaaggaataattcaggtctcaagatccattggtgatgtttatcttaaacacacaagattttgcagggaaccaacaaatggaaaattcagagttcctcaaccccttaatatgcctatcctgttggccactccaacaattttaaaacatcctctacatccaaatgactccttcctcatatttgcttctgatggtctatgggagcacttgagcaatgaaaaggccgttgaaattgtgaagagtcaccctcgtaaaggaagtgcaaagaggcttgtcaaggctgctctccatgtagctgccaaaaaaagagagatgcgatattctgatcttcgaaacattgacaaaaaggtccgacgtcattttcacgatgatataactgtaattattttattcttaaacatgacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="3193" stop="7605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3493" g_stop="3523" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4671" g_stop="5041" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="402" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5616" g_stop="5852" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="639" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5853" i_stop="7150" i_length="1298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7151" g_stop="7305" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="793" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U331075" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3493" e_stop="3523"/>
          <exon e_start="4671" e_stop="5041"/>
          <exon e_start="5616" e_stop="5852"/>
          <exon e_start="7151" e_stop="7305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGATCACTTATTTCGACATTTCCAAGGTTTATCTTCTTTCTGTTTGTAATTTTTTTTATCTGTTTTATTGGAGAAAAAAAAGATGTTAAATTTGCTACATAGACAATCTTTAGTCAATCTACTGCGGCTCATATCGAAATAAGGATAGTCGATTTAAGTGGGGAATGTTGAATCAAGAATGAAGCAAGAGTAGCCCCAAGTCTTAATTAGTATTAGGATATGTCGATTTAAGTGGGGAAGCTTGAGTCAAGAGTAGCCCAAGTCTAATGAGTATTAGGATATGTTGACTTAAGTGGGGAAGGTTGATTCAAGAATGAGGCAAAACTAGGCTCAAGTCTAATCAGTTGAAGTCACAGGGCGGGGAGGGGGTCCTTGAGTGGATTCCACATTAGTCCCAAGACGTTGGTTTCTAACTAGAAAAGTGATCATTTAAGCTTTAGTGAGGAGGGGCCTTCATGTTTATTGACTTGAACAACTGACCTTTTAAATGAACCTATGAGTCAAAAAGGACTTAACTAAAGGCACCTGCTCAGTTATATGAATCTTTTGTATTCCGCTTAATTCGAGCCTATTTCATTCTAGAACCTTACTAAATTTTGTTTCTGGGAATAATCATAAGGATATGGAAATTCTCCGTGATGTCTGGTAGCAGTTGCATTGTACAACTGAAAAAGATCAACTCTTGAAAATCCCTGTTACAAAAATCCTAACTCTAGGTACCTTCTCTGCAGGTTTCTTGATGAATAGGGTGTGTGGATATTTTAGAGGCATTCTAGTCGAGGGGTTCAATTGCATAACTAGCTTATACCGTAAAGGGTTCCTAAATTATTATATAGAAATTCCTGATATCTACTTTGTTAATGTGTTCATGTAGTGGGTTGGTCTTCATTTGGGCCTTCTGCTCCATTACCATCTATAACTCCCAAAGTCCTAAAACCAGGGGCTTACATCTTCCATTGATTGTTTCCTTTTTCCTCAAAATTTTTGAAATACTGAAATATGTTGGATATATTTTCTTGATAATAGAAATCCGCGAGGGTCAATGGCACACATCATGCACTGCATTCTTAGTACTAGACCAAAGCCCTGAGGGTTACAAATTTGAATTTAGGTGTTGAACATTAGGAAAGGAAAACTTTTGTAGTGGTTTCATGGATTTTACCCTTAATGCAGCAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAGGTAAGGTCAACTATACGAAAAGTTTCATGTTATTAAATTATGAAAAAAACTTCCAAATTCTCCCTGCATTTCCCATATTCCTATGCTTGTAAAGGATATGCGTAGGTGCTTTGATGTGTATCACGATCTAAAAGAGTAGTCTTATGTGAATAATTTTATTTCTATGGCCACTTACAGTAAATAATTGAGCTTCTGTCGGTCTTCTTTTTTCTGGGGAATTACCATGTTATGTATGGTCATATGGTGTAATAATGAACCCGAGTAAACTGAATTTGGGTAGAAAAGCAGGTTTAAAAACTTTCAAGATGACATCATGTTTTAAAGAAAAATTGATACGCGTCTCGAATATCTACTGTTTCTCATCGATTTTAATATTTTATGTCTTTATCGTTAGGATAAAGAATTCTGTTTTTTGGCTGAAAGTGTCACTAGTCTATGGTTGATCAGTTTGTACCTGTATGTCATACTTTCGAATTGGAGTTCTACAATTGTTGCTTTACATGGATAAAAATTAGAATTCATTCTCTAGTCTGCAACTTATTTCTTAGTAAACAGTCTCCTAAATTGACTGCAGGTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAAGTAAGTTCTATGCACCAAACCATTATACTTTCCTTCTTATTCTGTTCAATTTAAGCTAATATGCTTCTTATGGGCAAACTATGACTTCAAATACATGTTTGCTTTTGATGATATACATAATTTTTATTTTTATTTTGATAATTCAAGGATAATTTTCAGTAACTACCAAGTATGTAGAAGTCTATAAAATCAAAGCGCATCAAACTACTGTAACTTAACCATCTATTAAGAGGAATACTGTATTCTTCTTACACTAAAGGCAAACCACACAGAAAACAAAAGAGATAGATATATATGCTAACCAAATCGGCAATCACACAGTGATATACATCCAGTGTACTAAATTGGACCATCCAAGAGTCAACTTCCTCATACACTCCATAAGTGCTTGTCTATACCAGCATAAGTACACATCCTACGATCACCCTCATGATTTCTGAATGATATCTTCAGACGTTACTTCTCTTTTAGGTTTTCAAGCTCTCTGGCATTCCCCATTAGATTTCAGCAACTTGTAGATGACTTCTCTAATGTCTTTCCATTATTTATACCCTGAATTTTCTCCTTAATTATTCCTTCATAATTTTATTGAAAAGTCGATCTCTTTAGCACCAAATAATCAGGTTTTCAGGTGAGAAGATGCTTTCACCTTCCAAGTTCTATTCTCCTTGTGATCTCTTTCAATTTCTGCGAGTAGGTGTGATGCCTCTTTGTGATGTCTTTTAAATGAAATGCTCAGACCTTCCAAATCTAGTTTGAAATGGGATCATTTGTTCCTACGGTGTATATTTTATTTTTATGGTGAATGGTGAAAGAAAAAGTAACAGAAGTGTACCAAAGATATCATGTATTTTCCAAAAGAGCTCTGTAACATATGAATGATAATCAAATGTTACTTTGATCTTGGGAGCACACCAGTGATTGAAGCCACTCAAGCTGTGGCCCTGCCTTGAAATTCCATTTGATTTACTCACAGTTATATCATCTTTACTCTCCATACTAACAACCCTGTAAACTCAGTACCATGCCAAATGACATAACTCTTATCCTTTTACTCTTCATGGTTCAATTTATTAATTAAGGCTTCCCTTCGAGATCCTCTCTCTCTCTCTCTCTATATATATATATATATATATCTTTCTCTTTGTTGAAGTGTATAAACACATGCCGGACATTTTGACTCTTTTAAAGAGATGGTTTTAGCTCGTTGTCCCTTCTGATGTATTTTGGTATGCACTCTTGAACGTGAAAATAAATCTGCTCACTTTTTCATGCTCATATTTTTCTTGCAAATACAGGGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGAT</genome_strand>
        <mrna_strand>GTTTGTGATCACTTATTTCGACATTTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAA-CATGACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321656" ref_strand="+" ref_description="SGN-U321656        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 6e-05, score=33.1) genbank/nr: Peptidase,(evalue: 6e-12, score=75.1)">
      <seq>cggaagttagtgactactatggcagacaagatgagggaagaaattaagatagttcggacatgtgaagaggaggtgtgcggatgcaccaataaaaaggtgtgagaggctgactatgagaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctgataagaaaaatatggtgcgtagactgaagaagagtctctatggtttgaaacaagcaccaagaccatacttaaagtttggcaggtttatgatgactattggcttacttggtataatgatgatcactgttcttacttcaagaaatttataaattcgtacatcactttgctcctgtatatggatgatatgttggtgacaggttaaaacatgtgtgggatcacaaaactgaaggagcaaatgtctagtgaattttttgataaagaatttgggactggaaattgaaagagacaggttgaagctgagtcagaagaaatagattgaaaaaataattcttaaagaggctaaacatttgggatgccaagttggtgcacttcaagaaaatctgaaagcaagtcctttggcaggtcacttgaattgggattgtttttggcaagcgtagaagttaactttgtttgaaagaaagaatcttgagacacaggtttcatagaggagcagattacaaagtgttgctttattgcagaagttgatttggtgagctccacccttcaccgtggaatttcttcttttttcagttagaattttttttaattcagtttttggggaatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18843" stop="16397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18543" g_stop="17456" g_length="1088"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1088" r_length="1088" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17455" i_stop="16833" i_length="623">
            <donor d_prob="0.635" d_score="1.00"/>
            <acceptor a_prob="0.212" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16832" g_stop="16697" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1089" r_stop="1224" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U321656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18543" e_stop="17456"/>
          <exon e_start="16832" e_stop="16697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAGGTGAGTTGCGACTTGTTCTTACTAAAGTTCTTTCCTGAAGAGATCATGTCCCATAAGTTATTTGAATTAATGTTTCTAAAGTATTAATGTGAGCTAAACTGGAATGAGTGAGCTCACATTGCGCATCATTGAATGAGTCTTTCTCGTGCTCTATTTTCTGCTTTGTGTTTATCCGTCTAATGGAAGTCTACTTATTTGTGTATGAGTGCTTTGTGGTAACTCTTTTCAGCCCTAAAACAGTACCTAATTCCCTGGAAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGATAAAGATAAAATGTAAAAAACTTCAATGCGAAATTTTAATAAATGGCAATCGTATAAAGATTACTAACTTTAAGGGATTAACATGAATGATGATCCATATAAAGAGTCATCGAGCATCCATATTTGTATTTTCTTTCTTATCCGTTCATCAAGTACATGTTTTCATCTTATGCCTTGGTTTGAGTTCATTGAGGAGAACGCTGAGACCTCTACTGTCAGTAGTATACTGACGTTCTCTTTTGTGGATTCTATATTGACCTATGCCAATATAGACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGC</genome_strand>
        <mrna_strand>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341207" ref_strand="+" ref_description="SGN-U341207        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcataaccatgcataagagagtacattatggctgttgtcactatgaaagattacacaaagattgatgggatatgtcgtatttgcttggtcatctttccagggaattacgaactgatttatggttgaaaagagttactacaaagaagaagatagagcacgagaaagactcattcaatgatgtgcagtgtgaactcactcattacagtttagctcacattaataccttagaaacattaattcaaataacttatggggcatgatctcttcaggaaagaacttgagtaagaacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="16805" stop="17746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17105" g_stop="17248" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17249" i_stop="17298" i_length="50">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.85"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17299" g_stop="17446" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="294" r_length="150" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U341207" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17105" e_stop="17248"/>
          <exon e_start="17299" e_stop="17446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAACCATGCATAAGAGAGTACATTATGGCTGTTGTCACTATGAAAGACGACACAATTCTTGATGGGATATGTTGTCTTTTCTTGGTCATCTTTCCAGGGAATTAGGTACTGTTTTAGGGCTGAAAAGAGTTACCACAAAGCACTCATACACAAATAAGTAGACTTCCATTAGACGGATAAACACAAAGCAGA-AA-ATAGAGCACGAGAAAGACTCATTCAATGATGCGCAATGTGAGCTCACTCATTCCAGTTTAGCTCACATTAATACTTTAGAAACATTAATTCAAATAACTTATGGGACATGATCTCTTCAGGAAAGAACTTTAGTAAGAACAAGTC</genome_strand>
        <mrna_strand>TCATAACCATGCATAAGAGAGTACATTATGGCTGTTGTCACTATGAAAGATTACACAAAGATTGATGGGATATGTCGTATTTGCTTGGTCATCTTTCCAGGGAATTACGAACTGATTTATGGTTGAAAAGAGTTACTACAAAGA..................................................AGAAGATAGAGCACGAGAAAGACTCATTCAATGATGTGCAGTGTGAACTCACTCATTACAGTTTAGCTCACATTAATACCTTAGAAACATTAATTCAAATAACTTATGGGGCATGATCTCTTCAGGAAAGAACTTGAGTAAGAACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318926" ref_strand="+" ref_description="SGN-U318926        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine-rich protein-related, contains some similarity to serine-rich proteins | chr5:8773795-8776003 FORWARD | Aliases: None(evalue: 4e-42, score=168) genbank/nr: hypothetical(evalue: 6e-49, score=197)">
      <seq>atcttctcccacctataaatttacccttcgacactcgctaggtttgccaaactgaaaagccttagggcactttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagctgataacctgtgaaatttccgtggtaacaggttggtgattttcatatattaactgaggctcatctcttgagagttttccggcggcggcgtctgatcctggctgcggttcttactactccggtgaaatgaaagctgtagggcaattttgatgcagtatggaagtagtagaattctcccttgtacatatggttttgttgcagtaactgattgcaattgaaaggacaatttggacttttaaaatctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21793" stop="20220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21493" g_stop="20508" g_length="986"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="986" r_length="986" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U318926" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>986</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21493" e_stop="20508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAATTAAACCGATTAAAATT</genome_strand>
        <mrna_strand>ATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327362" ref_strand="+" ref_description="SGN-U327362        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30(evalue: 3e-71, score=265) genbank/nr: gi|15238938|ref|NP_196665.1| expressed protein [Arabidopsis thaliana] gi|11358369|pir||T51793 hypothetical protein T5K6_30 - Arabidopsis thaliana gi|9795156|emb|CAC03452.1| putative protein [Arabidopsis thaliana](evalue: 2e-69, score=265)">
      <seq>gataggaccagtactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaaagtcaggtggcaatctggccgaaacaattcaggagaactaaacataaaagatgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaggtgtggcaataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaatggtatcaccatggaggtacctccattgaaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacacttttagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctaattcatgtgatgagtccatattttgtcgtgggccaccgttccatatccgagtgaatgggactatgtgatatccttattgaagtgtccatagtttactaaaccaggtgaaactttccagcctcaactatttgtagaacttgttatttgcacttcgtatttcttgtaattcctccttatatagaggtccattttgtttaggagaaaactgtatcactcagtttccaattgatatacaataggattctacagtgatttgtaaagctatattattcaatgaagagctggacatttattcctgcaatttatagctttatgattttgttgcatgggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42423" stop="40645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42123" g_stop="41682" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="40950" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="922" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="927" polyA_stop="938"/>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U327362" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42123" e_stop="41682"/>
          <exon e_start="41429" e_stop="40950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCT</genome_strand>
        <mrna_strand>GATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339273" ref_strand="+" ref_description="SGN-U339273        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30(evalue: 1e-57, score=198) genbank/nr: gi|15238938|ref|NP_196665.1| expressed protein [Arabidopsis thaliana] gi|11358369|pir||T51793 hypothetical protein T5K6_30 - Arabidopsis thaliana gi|9795156|emb|CAC03452.1| putative protein [Arabidopsis thaliana](evalue: 7e-56, score=198)">
      <seq>tcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggtccacttacttatgctggagatgcatcaataaatggatctattcctcccggtaggcgattggttgttccccttaatatatgtgtttcacaggggttatctcttatgaaggctcgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaatgttcaagtggaaaccagttctgctgaagaatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtcttcgagattggcgtgtctgtcaatatggaggattctaacaatgaggagaatcctgagtatgactatcctaaaacaaggattgacagagattacactgccagggtgctaataccattagaacattttaagttacctgttcttgatggtacttacctggttaaggagtctcaaatggatangaccagtactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaattaattttctaaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="47252" stop="41730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46952" g_stop="46794" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46793" i_stop="42591" i_length="4203">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42590" g_stop="42030" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="719" r_length="560" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U339273" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46952" e_stop="46794"/>
          <exon e_start="42590" e_stop="42030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAAGTAGGTTCATTAAAAATTCCAGGATGCATTGTTCATTGTTTTGGTGTTATCACTGAACATTATTTTAAGGATGTGGATAATCTTCTAGTGGGAGCAGCTCAAGGACTTGTGCTGTCTGACCCTTTCCGCTGTTGTGGGTCACCAAAGTTGAAAAATGTTACGATTCCAAATATTTCGGTGGTCCCCCCGTTGCCATTGCTTATATCACGTGTTGTGGGTAGTGATGGTGCTATAATTTTATATGAAGGAGAGATTCGTGAAGTACAGATAAGTGTGGCCAATGCAGGTACAGTTCCGATAGAGCAAGCCCACATCTCATTATCTGGGAAAAATCAAGATTCAATCCAGTTAATTGTTTATGAAACCTTGAAGTCATCCCTTCCTTTGAAGCCCGGTGCTGAAGTGAGAATACCTGTCACTTTAAAGACTTGGCAGCTTGGACTTTTGGATCCGGATGCTGCTCCTAGTAAGAACATATCTGGAAGCACCGGGAGGCAAGTCAAGGATGGATGCAGTCCTGTGCTGCTGATCCACTATGCGGGTGAGCATTCAAATACTGATTGTTGGAGGTTAGGTGATAGACTAGGAAAATGAAACACTGTGAACTTGGGATGCTGCATCCTGGTTCTACGAACATATATTAGTGCAACAAGCTGGGAAAGTCCCTGCACTCTCTAGGGCCCCTCTTGTTTGTGTTGCTTTCCCATCAATTATGAGGGGTCCTTTCTTTTTTCTTTGTTTCCATATGACTCAGAATGTACACAATGCATGTGGATTTGGATATGGATGTTGATATGACTTTTTTTTAAAATTTTTTTGCATAACCACTTGTTTTTGCAATCTGAAAGAGTCAGTCAGGCTGGTGGTGAGCTTCTGCAACAACATGAGAATCATATTTGTTTAGAATGAAATTGAGAGAGATAAATGTTAGGGACCAAATCAAATATTGGCCATGAAATTGGGAACAAAGATAGAACTTACACCGTGGGTATACATGGAATATTTTTGTACAATACTAAAAGACAATGTAAAATGATGGAAGTGTAGGATGTCAATTAGTTGGTCACTAATCATGACATGATTACGTGCAGAGAGTTTTAGTTAAGAGAACATTCTGCAGCATGGGATGAGATTTTATTTGTTTTGACTTTCCGTTTTGTTTCTGAAATGTATTAGCCTCATGCTTTAGTCAGTCATTTGAGGTTCATGATTTAGACTGTTATTTACCTGCCAATTTTTTTGTTATGATTTATTACTATTTGGATTCTCTAATTGGTTATCAGAAACAGCCTCTCTACCTCATAGGTAGGGGTAAGGCTGCATACTCACCACACTCCCCAGACCCCACTTGTTGGATTTCATGTACATCTAGTTGTATTACATAATGATTTGCTACTCTTGTTGTCCATTAACTCATCCTGGATGTTTAGATTCTCTAACTGGTGTTTGGGGCTGGGTAGCATAGAATTTCTTCTATATTGACTGATCTACTTCTCTTATCAGGTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAG</genome_strand>
        <mrna_strand>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATANGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTAATTTTCT-AAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339272" ref_strand="+" ref_description="SGN-U339272        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30(evalue: 9e-103, score=333) genbank/nr: gi|15238938|ref|NP_196665.1| expressed protein [Arabidopsis thaliana] gi|11358369|pir||T51793 hypothetical protein T5K6_30 - Arabidopsis thaliana gi|9795156|emb|CAC03452.1| putative protein [Arabidopsis thaliana](evalue: 7e-101, score=333)">
      <seq>aagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctgggaattttgatgcttttcccatcagtgttagtctgcctcctaattctccaaagtgattgcattatctggaattcctactgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="48921" stop="43793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48621" g_stop="48572" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47086" g_stop="46794" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="343" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44430" g_stop="44094" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="679" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U339272" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48621" e_stop="48572"/>
          <exon e_start="47086" e_stop="46794"/>
          <exon e_start="44430" e_stop="44094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</genome_strand>
        <mrna_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATT-CTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339274" ref_strand="+" ref_description="SGN-U339274        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30(evalue: 3e-100, score=352) genbank/nr: gi|15238938|ref|NP_196665.1| expressed protein [Arabidopsis thaliana] gi|11358369|pir||T51793 hypothetical protein T5K6_30 - Arabidopsis thaliana gi|9795156|emb|CAC03452.1| putative protein [Arabidopsis thaliana](evalue: 2e-98, score=352)">
      <seq>aagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctggggattttgatgcttttcccatcagtgttagtctgcctcctaattcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="48921" stop="43827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48621" g_stop="48572" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47086" g_stop="46794" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="343" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44430" g_stop="44127" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="647" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U339274" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48621" e_stop="48572"/>
          <exon e_start="47086" e_stop="46794"/>
          <exon e_start="44430" e_stop="44127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCC</genome_strand>
        <mrna_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGGATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331694" ref_strand="+" ref_description="SGN-U331694        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tccaatccaagcatccatgtatatgtaaattttgagtgaaatgttctatgctgaatcagaagtatgttggtgatgctggtatttcttcatggtttattgtattagacactgctaactagatcttgcttgaaagataatcaaattgcctttgtaaaggctggttgtacttcagcgtttattgtattgcacattacttactagatcatgcctgaaagatgctcaaattacctgtttgaaggccaatacatgtattgaccatatcttcagcatatagttaggagtttactgataagctcataaaatcagaagaattctaattccatcaggaataaccttttttttatcataagaactattcttttaatgtattcctgtagctaacatactattactaatggtggtaaacttgcaaaagactatttggaacttctttcactagtctctctagaaagaagtaaatttaatctggttcgatcttcatagttccttcagattttactattattagttttgctgtttcagaatgatcttcccgcatactgatactctagattttatggtatctgcagtttgctggcttatttctttcctcagactgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="45425" stop="44223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45125" g_stop="44523" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U331694" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45125" e_stop="44523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAG-TTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</genome_strand>
        <mrna_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327525" ref_strand="+" ref_description="SGN-U327525        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to hypercellular protein (Aspergillus nidulans) GI:9309269 | chr5:3495288-3500923 FORWARD | Aliases: T5K6.30, T5K6_30(evalue: 2e-100, score=238) genbank/nr: gi|15238938|ref|NP_196665.1| expressed protein [Arabidopsis thaliana] gi|11358369|pir||T51793 hypothetical protein T5K6_30 - Arabidopsis thaliana gi|9795156|emb|CAC03452.1| putative protein [Arabidopsis thaliana](evalue: 2e-98, score=238)">
      <seq>ttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcattttgcattacagaaagtcatttattcaagacaatgctcaaagagtttctcctctaagtttcgagcttgaggctactctcaaattagcacgatacctctgcaggaaggagttggccaaggaagtggttgatttgttgactacggctgctgatggagcaaatctttgattgatgctagtgacagattgatattattcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="54978" stop="48460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54678" g_stop="54641" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53262" g_stop="53043" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="258" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52938" g_stop="52756" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="441" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51167" g_stop="51058" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="551" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51057" i_stop="49899" i_length="1159">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49898" g_stop="49839" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="611" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="48858" i_length="981">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48857" g_stop="48760" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="708" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U327525" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54678" e_stop="54641"/>
          <exon e_start="53262" e_stop="53043"/>
          <exon e_start="52938" e_stop="52756"/>
          <exon e_start="51167" e_stop="51058"/>
          <exon e_start="49898" e_stop="49839"/>
          <exon e_start="48857" e_stop="48760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAGGTATCTGTGTGTCTTAATCTTTCTGTAGGTGTAGTTACAACTTACATAAGTACCTTTATCATGTCTTTTTTCTTATTGTGATTGGGTATATAATTTGTATTTGCCATCCCTTTCTTTCCGATTCACGCACAAGAGTTTTGAGGGGGAAAACACTATCTTTTTTTTTTCCGATGATGTAAGTGATATCATTAAAAATGAATCAAGAAGATGCAGTTGTTACAAGATATGACATTGAAGCTCTCAAAAAATCTTGTCACCTATACAAAAACTGTCTATGACAGAGTGAGGGAACTATTGAAGTCTAATAGTTGATCTGAACCATTAACTGGGAACAAACTGGACCAGCGATGTAACCCCAGGAATAAAAATGGACTTCAAATTATATTTCCATCTTAATTTTTGTAGTGTCACAGGATTCCTTGATAATGGATATGTAGTAATCATTATGTTAGGAACCTGCAAGTTCTATGAGAGTAAAGTAAAAAGACTAAGTTGCTTATTTTGGTGGTGTGGCTATTTGGAAGTTCTTAATTTTTGTTTTGTTCGTAAAATGACTTAGTTCCCAGCCCCATTTTTGGCAGTTTAGCAGATCACAGAACAATTTAGTCACTTGTTCAGGAAGTCTAGAACTCCTTGATACAGGGCAAGTTACTGTGAAATCCATCATAATTTGCATGTTGAACAACTTTGACTGATCGGTAGATGAAGTAATAGTTGGAGGCTGACTCAGATAAACTTATATGACTGAAGTGTGGGAAAACTATGTTGCTGTGTGAGGAATTGCCACCTTTCTATATTGAAGAAAAGCTTGAATTACAAGCCTTTTTGTCAAAAATAAAAAAGAAGAAAAGTTAGCATGACATAACACTAGTGATATGGATCTTTATCCTATGACCAAACTATTTAACGATTTAAATTGTTCATGTATAACAAAGAGCCATCGCTATGTCTTTTCTCTGTGTGGCTCAGTTGTTGGACTGTTGATTAAGATAATCCTCATTTTGGTAGGGGTTCAAAATGGATTTATTCTTCTTATCTTCTTTGTGGTATAAACTAGATGATTTCCCTTTTCAACTAGCAATAGGTATATTGCTGAATCTAGATTTCTGATTATTTTCTTTTTCAGCATATATAACTGTAAATATTGTTTTTGGTGCAGAGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAGGTACTCTTTGTAAAGATCAAATATAATTCTGGAATGATCTTCTTTGTAACCCGTTTAGTTATGTTCTTTTCTTGATAAAAACCAGTTTAATAATGACTTGCAGCTATATTCTCAAAAAATAATGACTGGCAGCTACACTGTAAACTTGCTGTGTTCTCTCTGTTCTTTCCTTTTGACGTACTTATATGTTAATTGAAATCCTTTTGGGAAGATATGTAAGTTGAGGTTTAACTTCTGAATGATAATAATTTGGTGGGATTTAATTGAGTATAGACGTATGATGCTGTGCTTATGATTTACTGGCTACAGACTAAGACCACAGCCCTCCAATAACTATGTGGAGTGGGGTGAAGAGGAGAAGGTTTGACGGAAAGTGAAAAAGAAGTAAACTAAGAAATTTCAATATTCCAATTTTTCTTTTAGTGTTAAAAAAGTAAACTATCAAATTTCCACATTTAGCAAACAGCAGATTTTGTTTCCCCCCAATATGCTTCTGCTTGTGATTAATCTAGGTTACTCATTAAGTCTAAGCTACAGAAATATGTTCCTCAGCAGTTATGGACTTCAGTTTTTGTAGAAAATGAGAAACTATAAAACTGATGATGTATCTGTCTATCTGAATTCAAATCAAATTGCCCTTACAAAAAATGTTCAAATCAATGGTAAAAACAGAAAATAGCATAAATATTAGTACTAGTTTCAAAAGAATAAATATTAGTACCTAAATCTGCAACGTACAGTATCTTCATTTCGTTAGACTTCAATAATGCCTACTGTATATCTTTTGCTTATATGATGTAGTTCATCAAAGAGAAGCCAATGATACCTCGCCTTTTCAAAATGCATCTTGTTACCGATCACTTCAAACTTTTTGGCTGAAATCTGGAAGATCTTGATGTAACATTACTTAGAAGAAGAGCTACTTCTGTCATATATATATCTTCTTGAGCAGTTTTTGACTTATACTTCTTGGTTTGGCAGGAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGGAGCAAAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</genome_strand>
        <mrna_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGGAGC-AAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343600" ref_strand="+" ref_description="SGN-U343600        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:18268043-18269320 FORWARD | Aliases: None(evalue: 9e-24, score=107) genbank/nr: gi|50918389|ref|XP_469591.1| expressed protein [Oryza sativa (japonica cultivar-group)] >gi|37718771|gb|AAR01643.1| expressed protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-23, score=112)">
      <seq>attttgatagaataagttagtcattaacattttacattgactgcaccattattcatattggagtattcgtggaactatcttcttttttcttatgcctttaaaaataataattctaatgtacttcattctaacctagctaatatattttagacattttttatctagacttgctcctcctctcggaagaggaacataattaatgtactataacactttgaccataacctaacctagccaatattttaagacatactctgctaagtctttatttagatttgctctttctcttgaatgagggacatagttaatgctctaaaacactttgacggtagcattgctactataacattacttctgccttctggcacagttctgcacccaacttagctgtttatatcatggtatttctcactatttataacataagcagaacatgtcgactgagaagagtccgcttgagcaaacgtcacctgctgttgcatcatcatgccgaaaaaagaagtctgaaagtgccacatttttggaggatgtgaaggatcatattgatgagtttatacatgcctcaatggatgaacacgcatcttgctttaagaagaccatcaataagatgtttgggatgtctaaaattgtcgctgaaagaaatgctgaagcaaaaggagttgagagctcacttcctctccaactgttgtatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="60929" stop="62315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61229" g_stop="61835" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61926" g_stop="62015" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="696" r_length="89" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U343600" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61229" e_stop="61835"/>
          <exon e_start="61926" e_stop="62015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAGGTTAGTTCCAAATCAAAATAGCATTATTGATCGTTCCTTTCTTAATGAGGCATTATGATTTATTCTTAACAGCTGTGGTTATGCCTTCAGATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAG</genome_strand>
        <mrna_strand>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG..........................................................................................ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAAGGAGTTGAGAGCTCACTTCCTCTCC-AACTGTTGTATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341223" ref_strand="+" ref_description="SGN-U341223        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttttttttttgcctgagaagttgtgctgctttttacatctgttggttttaccaaacattagacatgtctagataaacaaaataaatgggcacaacaatttgagatgctcttgcctaagaagtcttgctgctttttacatctgtctgttttaccacacattagacatgtctagataaacaaaataaatgggtacaacaatttgagaggctcttgcctaagaagttatgctgctttttatgtctgttggttttgccacacattagacatgtctagattttttttttaaaaaaaaaactaatgggcattacaataacctgatgaatcctcatagtgattgttggatcctttgttttatggtttgtgctcttccttttctgtcgacatctaactagctttagctttggaccatactctatgcttgttctctagttacatgcgtatttagagatatcatccgagggtttgatccaggcttggatggtggagttttcaaaatacgcttgtaatggtgccctgataagatgtatgcgtccacgatcagtcaacggaccaggtcccttaactcaacaagaacaggaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="61853" stop="63028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62146" g_stop="62728" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U341223" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62146" e_stop="62728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGCTCTTGCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAGACATGTCTAGATAAACAAAATAAATGGGCACAACAATTTGAGATGCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATTTGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAACTAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACTAGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGAGTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAATAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTGCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAGACATGTCTAGATAAACAAAATAAATGGGCACAACAATTTGAGATGCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATTTGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAACTAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACTAGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGAGTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326705" ref_strand="+" ref_description="SGN-U326705        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>agctcaagcatcaaagaactcagcaagggacctgatcccgaaaagtctgcatacgaaggacgtaaagatagctgtcaaaaagctgtcaattctgatgtggtaggtgcacaacttttcatgacagcagactcttagccgatagcttcgtcccaagtgtttgtgtacatggtgatatagtctcttatcctaaaacacaaacacaagattttgacaaacaaaaactcacaagcttaaaaagaaaaagtcatcttcaaggaagaataataatcatactcaacaaaaagatttgatgaagtgttgaagcatctttgttgagtttgagttttgtgtctatcattttataggtttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttataaaggattcagatagtttgtttttggtttgtaaaagtataaatcagttaaccctaactgatttagtgggcaacattgttttgttgcttagtcaaattctaagtcatctaggtgggatggtttagtggtcagtgttgtacctgcttagtcaaattctaaatcatctagagttaggtggtttagcgagcgatggggtctccgtttagcaaaatctaagttatctaggggtaatagcttagtgggcagtgttgtatctgcttaggcttttcaagtaatagagttattacatggtcatatgatcaataacttcttctcacattggttgtaactgggttcacttttgcttaaaaaagattagagaaacagttgaaaatcctgtgcaacaggtcgtggttttactcccttgagcaaggaggtttccacgtaaactgcttgtgtcgtcttctgttcatcgtttactctttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="63991" stop="62423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63691" g_stop="62723" g_length="969"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="969" r_length="969" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U326705" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>969</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63691" e_stop="62723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</genome_strand>
        <mrna_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGTGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAAAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320852" ref_strand="+" ref_description="SGN-U320852        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT5G25190.1 | Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | chr5:8706793-8707739 REVERSE | Aliases: F21J6.103, F21J6_103 (evalue: 5e-43, score=171) genbank/nr: gi|18650662|gb|AAL75809.1| ethylene response factor 1 [Lycopersicon esculentum](evalue: 5e-98, score=360)">
      <seq>cctcaaccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagtaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggacttaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaaccttctactagttgtaaaattccattataatataatcttttctctcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69315" stop="71431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69615" g_stop="69799" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="71131" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="1081" r_length="896" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U320852" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1081</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69615" e_stop="69799"/>
          <exon e_start="70236" e_stop="71131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGA</genome_strand>
        <mrna_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTTAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343095" ref_strand="-" ref_description="SGN-U343095        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger protein-related, contains Pfam profiles PF03108: MuDR family transposase, PF04434: SWIM zinc finger | chr1:23851419-23853578 FORWARD | Aliases: F22C12.28, F22C12_28(evalue: 5e-07, score=52) genbank/nr: putative(evalue: 3e-41, score=171)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="88643" stop="89760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88942" g_stop="89460" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U343095" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343095" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88942" e_stop="89460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTA-AATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342680" ref_strand="+" ref_description="SGN-U342680        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-19, score=97.4)">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="93142" stop="91644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92850" g_stop="92570" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92569" i_stop="92369" i_length="201">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92368" g_stop="92246" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92245" i_stop="92163" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92162" g_stop="91944" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U342680" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92850" e_stop="92570"/>
          <exon e_start="92368" e_stop="92246"/>
          <exon e_start="92162" e_stop="91944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAGGTAATGTTTATGATACAGTGGGTATGTTGTGTATCATGCACATATAGTCAATGCTTTGTATCATGATCATTTTTTTCTCATTTTATATTCTGTCATGTATCATTCATATTTAATCAATACTATGTATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAACTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACATCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG.........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325684" ref_strand="+" ref_description="SGN-U325684        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | Golgi SNARE 11 protein, identical to Golgi SNARE 11 protein (GI:13898893) {Arabidopsis thaliana}; similar to putative cis-Golgi SNARE protein GI:2583133 from (Arabidopsis thaliana);similar toSP:O95249: 28 kDa Golgi SNARE protein (28 kDa cis-Golgi SNARE p28) (GOS-28). (Homo sapiens); similar to Golgi SNARE protein (Golgi SNAP receptor complex member 1) (28 kDa cis-Golgi SNARE p28) (GOS-28) (SP:Q62931) {Rattus norvegicus} | chr1:5458529-5460327 REVERSE | Aliases: F7H2.21, F7H2_21(evalue: 2e-69, score=258) genbank/nr: gi|6850926|emb|CAB71130.1| hypothetical protein [Cicer arietinum](evalue: 6e-69, score=263)">
      <seq>cttcaacaagtaaattcacaaatgcaagcatgggtttcatcgggaggatctgagatcttctctcatacactgactcgccatcaagaaattcttcaagatctttttcaggagtttaaccggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactcttcatttttatacatgtaagaaggtatcttgaattggttttgatgcacgcggttgctatgccaatccaagtatcaacatgatttagaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="108817" stop="104576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108517" g_stop="108410" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108409" i_stop="107226" i_length="1184">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107225" g_stop="107058" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="276" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106451" g_stop="106338" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="390" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105171" g_stop="104875" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="687" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="701"/>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U325684" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108517" e_stop="108410"/>
          <exon e_start="107225" e_stop="107058"/>
          <exon e_start="106451" e_stop="106338"/>
          <exon e_start="105171" e_stop="104875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAGGTTCTTTAAATTATTTTTTCCCGCTTGATCTTGACGCAACTCTATTTTATACAGATTCTGTAACTACAAGCCATGGATATTTTGTAGTAATGGAAATATGCGCCAAGCAAAATGCTAATGCCTTGTTGCATAGGCCTATGGTTCAAAGGCAATGGTAGTAGAATATAAAATGTATGATAGATTTACACATGACTTTGAAACCTCACTCTTGCATCAGATCTGGTATTTAAGTAGAGAATGGTACAAGGGCTAGCCCACTATTCCCGAGTTTCAAAGCTGAAGCAACTAATTTCTTAGTCATCACATAAAAAAAATGGCTTACTAGAAGCTCAGCATTGGTTGTGAAGCTAGACCTTTTTTTGTGGTATGTTGGGGAAGCTAGTATTCGGTGTTCCTAAGGCAAACATTCCCTTGAAAATTAGTTTTATATTTAATGGGGTCTATTTCACCTTATAGTTGTTCTTGAACCACTGACAGGGTTCCTTGTCACTTGTCAGTATTGTCATGGCTATCAGCACCCATTACAACTATTGGACTAATAAAGAGTATGGGCTCTATGTTGTATCATCATTTAGAAAGCTGAATGGCCAAATAAGTCCAAGATGAACTTTGATAAGTGGAGGAATTTGCTGAACATGCTAAGTTTGATGAGATCCAAAATTCATAAGATGGTCGTTGAGAATCAGTTTTATTCACAGTGAGAACTAAGGGGAAGAATGAGTTTTATGCTTGTAGAATCATCTCTTGACAATTTCTTGTTCTAGCAAATTGTCTGAGTATGGAGTAAACTCTTTAGTTGTGTGAAGAACAGTTGCAACTAACCAATGATTCTGTGGGTAAATGATGATTTGCAATGCAGTAACTTCTTTAATTGTGTTGCTGAGAACAGTTGGAATTAACAGAGATCAGTGATTTCATTGCCAAAGTAAACCAGGGTAGCCTGAACAGTGAAAATTTTCAAGTATGATATGCAATTTTGGTAATGGGAATCAGTGAATATCTGATCATGGAATCATACTTTTTAAAGAGATGCATGTGTCATCGGACAACTCCCAAATATTTAATAGCAGTTTGTTTCCATGTCCCAATGGACAATTTCTGATATTTATAATAGCATGATTAGTAAAACATCCTCTTATCAAATAAGGTAATGATACTTGAAAAATTTTCTTGTTGGACTGTAGGAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</genome_strand>
        <mrna_strand>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338254" ref_strand="+" ref_description="SGN-U338254        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: putative(evalue: 4e-05, score=37.7)">
      <seq>agaaaatttcaccacagttatgatgttgaatccgtcttttcatatgtggaagtatttctcaaacacttggagctgcctaaaaaacttacttttgtttcttgcttctctttcaatgcggatctattgttttcctcatattatagctggggtgatgtgctaaacatgagatatatacatttaaataaagtaaaaatttaagacttggtcagcgtaatatatgttaatcttaaaatgaatgtgcagtcgttatggacttgaaaccaaaacaatatgcaactatatacttatcttcaaatcattgcacccaaactattacgcttaatgttttttgagtaacagctgtaaaggaaggaaaaactataagagtacaaagctctgtctagatggccacagattttccatggacattgtaatttttaagagtacttattttattgtagtaatcaggtgctgctctttctgttagttttatagccgtgtgtattgttgtatttaattgccgactcttgataatatatcagaagaaattactgacttcttgatatagatggatggntgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggntggcattaattcaaaaactcagcatatcagcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="107298" stop="106048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106998" g_stop="106348" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U338254" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106998" e_stop="106348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGG-TGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGG-TGGCATTAATTC-AAAACTCAGCAATATCAGCAGTCG</genome_strand>
        <mrna_strand>AGAAAATTTCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGNTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGNTGGCATTAATTCAAAAACTCAGC-ATATCAGCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336416" ref_strand="+" ref_description="SGN-U336416        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 8e-06, score=53.9)">
      <seq>aaataaaaatttaaagttgaaaatatttttaaaaagcataattaattttttggggagggggtggggctgaaagacagaaaaattccatggcagtagatatttgaagtatcagcacatataaaatctaatctatcatgcataacagaaacattaggccgaagcatgtccctacttgcatttctttttgcatatgggacaaaatagtcgatacatgtagaactgtaaggtgcagctacaacaactcatatctttaatcaatcatatttgccggaatacgagataaaacatattttcacaggaagggttgtgaagtaggtgttttgtgctttactttttttggttttgcagatgtgcaaggtactttctgactctggtgaagattcatttaatgcagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="113632" stop="112413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113332" g_stop="112713" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U336416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113332" e_stop="112713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTT</genome_strand>
        <mrna_strand>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336415" ref_strand="+" ref_description="SGN-U336415        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chromatin remodeling factor CHD3 (PICKLE), identical to chromatin remodeling factor CHD3 (Arabidopsis thaliana) GI:6478518 | chr2:10721485-10731065 FORWARD | Aliases: F13D4.130, F13D4_130(evalue: 7e-17, score=84) genbank/nr: gi|18400745|ref|NP_565587.1| chromatin remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana] gi|25453560|pir||T52301 GYMNOS/PICKLE protein [imported] - Arabidopsis thaliana gi|6318930|gb|AAF07084.1| GYMNOS/PICKLE [Arabidopsis thaliana] gi|6478518|gb|AAF13875.1| chromatin remodeling factor CHD3 [Arabidopsis thaliana](evalue: 5e-15, score=84)">
      <seq>acaagtttctgctccaggagtctatcaagcaccaaatgggctgaatgcggctaatgctgggacttctggaaatcaggtgaaggctgctgatgagactaaccatgaagtctcacatggtacaagcgatccttcaaacagaacccaacttcatcaagattcgtctttgttatatcattttagagagatgcagagaagacaagttgaatttataaggaaaagggtgatgcttcttgagaatgcaattaatgctgagtatcagagagacgttgttggttgcggaaaacctcatgaactgccagggaaagagatggagcgtgacaccaagattgtagacgaactaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcccaaaacttattgcaatttctccacagggaatctctgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="116416" stop="112608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116116" g_stop="115846" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115057" g_stop="114925" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="404" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114840" g_stop="114767" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="478" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112938" g_stop="112908" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="509" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U336415" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116116" e_stop="115846"/>
          <exon e_start="115057" e_stop="114925"/>
          <exon e_start="114840" e_stop="114767"/>
          <exon e_start="112938" e_stop="112908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTTGTAAGTCATCTTAAATTTTCAAAAATATCTGATGTTGGAGTTCATTAGATTATACTTGGAAGTCTATAAGTCATTGATATGTATCCAAAGAGGGTACTAACAAACCTGGTTTCGTCGTCTTTCCTTCTTTTTTTCTCTCCTGGTGTCACGTCGTCTCAGAAGAAAAACTAAGACTTGTAGATCGAGTGTTATGCTCTTTCCTTAAGAGCCATAGGACTACGAACCTGGTTTGATTGGGGTCCTGTAGACTCTAGGTATATTTCCGTTGTCATTCCATGTTAGCAGGCTAGCCTTGGAACTTCATGTTCCGGCTAGTTCTTAATCATTGAATATGTAACCTTGTGGTGTCCCAAACTATGTAAAAGGCTACATTTCTCTATGATTGATAGAGCCTGTGAAATTTGATGTTCTCTTGAGAAAGAACCTTTGGTGTGTTAGATATATACATTCTGCGGACTTTTTTCTGTGAAGCTTAAAGGAATAGAATTTCATGTGTTACTTAGTCTTTGTTTTCTCGTTGTCAAGGGACAGACGAGTCTTTATTCCTTCTACCTGTCTTGGCAGATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTGGTAATTTCACTTTGCTCATTTTCATGTTTTGTGATTTTTGTTTCTCATTTTGTTCCTATATGACTTATGTTTTAATTGTTGGGATTTGCACCCGCATTGATTGATTTGATCATTTGAGGGCAATTAAACCTGTATTCATGTGGTTTATTTGTATCCATGTGCTTCCCTCAGGGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</genome_strand>
        <mrna_strand>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGGCTGAATGCGGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT....................................................................................CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344845" ref_strand="+" ref_description="SGN-U344845        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein, contains Pfam PF03351: DOMON domain | chr5:22290302-22293527 FORWARD | Aliases: MBG8.9, MBG8_9(evalue: 3e-89, score=325) genbank/nr: gi|15239759|ref|NP_200294.1| expressed protein [Arabidopsis thaliana] gi|9758263|dbj|BAB08762.1| gene_id:MBG8.9~unknown protein [Arabidopsis thaliana] gi|19699059|gb|AAL90897.1| AT5g54830/MBG8_9 [Arabidopsis thaliana] gi|27363250|gb|AAO11544.1| At5g54830/MBG8_9 [Arabidopsis thaliana](evalue: 2e-87, score=325)">
      <seq>cattgaagtccatggatactaagtatgatttgcaattgaatcaaaatgctacaatgagagtgatatgggctttaggtttgataaaacctccggatagtcttcggcctttttatctcccacaaaatcatggtggtagctatgggcacttgacactgaatgtctcggaacatattgatgattgcttggggccgctggatgcagaagataaacaagatcaagaccttgtcattgcagataaaaaaggaccacttgttgtttcaacaggtccagctgtgttctacccaaatcctccaaacccttctaaagttctctacattaacaagaaagaggcaccccttctcagggtagagaggggtgttcaagtaaagttttcaattcaggctgggcatgatgttgccttctatataacctcagatccacttggtggaaatgctacattgaggaatatgtcagagaccatctactttgggggacctgaagcacaaggagttcaagccactcccacagaattagtttgggctcctgaccggaacacgccagatttagtttactatcagtctctatatgctcagaaaatggggtggaaagttcaagtggttgatgcaggcttacctgatatgtataacagcagcgtagttctggatgatcagcaggttacttcttttggacgttggctgaaaattcaatctccattgcagctcgaggggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="-" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="158539" stop="157226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158239" g_stop="157526" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="-" ref_id="SGN-U344845" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158239" e_stop="157526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</genome_strand>
        <mrna_strand>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTAC-TTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-sKruz5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331547" ref_strand="+" ref_description="SGN-U331547        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:15419410-15424189 REVERSE | Aliases: F11C18.80, F11C18_80(evalue: 5e-58, score=220) genbank/nr: Tudor(evalue: 7e-58, score=226)">
      <seq>aaaagctcacttgttcttctagggtttcacaagatctcttttgcctctgcaaaacacgagcgaattgcgatttctagggttacgatttgtgtttgttcgggtgtttgatggtccgaggagtgatttgagggtataaatcttgattttttctggaagattttgaagagagaaaggaaacgatggcgccttttgacaaagagcttgaagagcagattgctgttgctgggaacaagctgattgagcctccttcttcacttgaagaactcctccgtttgcttgaccaagtagagtcttccctgtctaaagtggagcagtcaccagcgaaatcaatgcatgatgcactttctccattgatgaaggcattggttgcaaatgatctcttgaggcattctgatgttgatgtgaaggtcgcagttgcttcgtgtattagtgagataactacaattactgcaccagacgctccatatgatgacgacaaaatgaaggatatctttcaattaattgtgtcgtcttttgagaatctggatgaccagtctagcagatcttataataagagggtgatgatccttgagacagtggccaaggtcaggtcatgtgttgtcatgctggatctagaatgtgatgggctcatcgctgagatgtttcaccacttccttacagctatcagagaggatcactctgaaaatgttttttcatccatggcaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0030C09-gTDbl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0030C09.1" temp_strand="+" temp_description="C04SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="169003" stop="173713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="169303" g_stop="169583" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="169584" i_stop="172941" i_length="3358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="172942" g_stop="173145" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="485" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="173146" i_stop="173218" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="173219" g_stop="173400" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="667" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0030C09.1" gen_strand="+" ref_id="SGN-U331547" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="169303" e_stop="169583"/>
          <exon e_start="172942" e_stop="173145"/>
          <exon e_start="173219" e_stop="173400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGACGTAAGCTTTTTTGTTTATTTTGGTTGTGAATTCTGTTTTTGTATAATCGGTATGATATTTTTTTTAGATTTTTATGTTTAGGTTTTTTTTTTGTTATCTTGAACTATTTCATACCATTTTTGGGCTACTTCGAATTGTTTTAGATGTTTGTTTAAGTAATTCTCGGGTTGAGTTTCTGCTTTTGTATGATGCTCCGCTTTACTTTAGAGCTAATTAGGGCTAGATTCAAAGAATAAAACTTGGAAGCCTACAAAATAATTGAACTATGTGTTGACTCCAGGGCATTGAACCTGAGCATCCCACATCTGGGAGATATGTGTACACCCTTGACTGGTGACCTCTGCTCTAGGTTTTGTCAAAGGGTGTTCAAAATTCTATATATACAAATAAAAACTAGTATTTAAGGCTAATGATGTTCGGCTGATTACCCTAGTACCGCCGCAGCTGTGCCCTTGTTGATTACCCTAGCACCGCCATAGCTATGCCCTTATTGATTACCCTAGCACTGCTGTAGCTCTGCCCTTGTTGATTACCCTAGCACCGCCGTAGCTATGCCCTTGTTGATTACCCTAGCACCGCTGTAGCTCTGCCCTTGTTGATTACCCTAGATCTGCCCTTGTTGAACACTGTTATCAACTTCTAATTTATTTTGATAAGGAAGTAAACATTATAAACTATCTTTTGGTTGAAAGCTTAACTTTTATTCAGCCAGTATGGAAATAGTACACCAGTTAGCTATTCTAATTTCTCACTCTTTTACAATCCTCATTAAGCTAGCTATTCTATCAGTTTCTACTCTACAATTCTAGCTATCTGTCTAATCTTTGAAGCCCCCCCCCCCCCCACCACACCACACCACACACTTACACTTGGTCTGGTGTTGTCCTTTTGTGTGAAGTTGGGGATGATTCCTCTGGATCTATGCTTGCATTCCTGCTGGTGTTGTTGAAATATTCTAGCATTCTGCTCAATCCAGACATGGTAAATGCATGCATTGAACAGCCAGCCTAGCATGTGTAATTCTGCTTTCCTTTGTTTCACTCTGTGCGTCAACTATTGGATCTCAGCCTCCCAATTTTAGTGATTCAAAATATGATTTAAAAAAGCCCTTCTTGATTGGTAACAGCCTTACCAATATCTTCACAAGTTAGTGGTAGGTCTACAGACACACCACCCTCCCTAGACCCAACTTGTGGGATTACAGTGGTAATGTTGTTGTCGTTTCTCTTTCTTGTGATGTATACGATGTTATCCCCCAGGACAGTATTTTGATTCTTACTCTATATAGAGCCCTTGAATACTGTTATTAGCTTTTGATTTGTTTTGATAGTGAGGTAGAAACTGACTTCTTTTAATTATTCTAAATATGATTAAAAATCTTTCTTTATTTGTTATCCTCCACCCTGGATGATTGCCATATGTTCCCTCTCCTCTTGTTTGATGCAAGTCCTTTACTATTCTTCAAATTTAATTCTTAATGGCCTACCCGCTGTTTCAGTTTGCATTGAGTTGAATTATCCTGCTTAATGAAAGTATTGCTTTTAAAATTCATGCTTTTCCTAATGTTTCTTTTAAATTTATTTTGATATTTGTTGTCTCTGCCTATTTGGAAATATTTTGGCATGTCTTTTTTATAAGTAATTTCTGTATTCTGGTAATTTTTCATTTTTTCCTGTTAACTGGTGGTCTCTGTTTAGAGTCTGGTTTAAACTATCTTGAAGCATTATGGTTTGCAATTGATGGGCATTGCCACTAGGGCCACTCTTTTTTCATGACTCCCCTGTGGGATGTGGAATATTACTGGGTATGTTGTTGCATGTGATGTATACATTAGTCGCAACTTTTTGTTTGGGTCCTAGAGTTTTGTGGTTTGCTAGTGAGACATATGAGCATGTCCATAGTTAAATAATTTGAACAGGATGTAGTCTGTGTAATCTTGACATCTCCTGGCGGAGCTTTTTATTTTTGATAATTGTTTCAAATGATGGTATCTGAAAATTCCAGAGAGATAATTGGGTTGGCGGGTAATAAGTACACCATTCTTTTTATTTGATAAGTGCCTGACAATTTGTAGGAAAGGGAAAATGAAAAAAATGGAAGAAGTAGTATATACTCTTGGAATCTCTGGGTATTAAATAACAGTCAATATTTATGCTGAAAGATAGCAAGGCTGTGGGCATGCTGTGTGTTTCCCCTGTGAGGCTCTTCTAGTTGTACTTGAAAATCCCGTTGGCTTTTCCTGGAGGGTTTCTCAAGGAGCAGAGTATGGGCAATATTAGTTTTCTTTCTGAAGTGGTGATTTTCTTATGCAAATGGTTTATTGATTTAACCCCCCATCTTAATTGAGAAGCCACAATGAAATAAGTTTCCTTTTGTGGGTGTCTTCCCCTAGTCAAAGTTAAAATGCATAGATTTGTGTTTAACAATCTCATAAATTAATTGTCATTTTACTTTTTAGAGAAAATCTGACTGTGCATCTTCGTATTGCTGGTTAAAGAACGATAAACAGTGACAGATACTAATTTGGAACCATGAGTTTCCTGGTATTTCCTTGATAACAAGCTGATGCAGACCACCTGTTTTTGGTGATAAAATTGATACTTTATGAATACGTCCTTTAGATTATTGTTTAGAAGATTTGGTTTGTGTGATTTTATGCTGCCATAATTCTTTTGGGAAAATACAAAAACCTTTAGCCTGTATGGATAAAATTGGGGCCAGCTGATTGTCATCACTTAATCGATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGACTGTTATTCCCCTTTTTCTAATCAATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGGCTGTTATTCCCCTTTTTCTTTAAAGTGGGTCATTGACTTCTAGATAGGAGATCTTTTTTCTTCTATAAATTTGTTTGGAATTTAACCCTGCAGTAGTATGGTTGGTTACATGGAGAAAAGGAAAAGCTAGAGTTTTTGAACTTAAGGAAGGACAGTGTAATTAACCATGGGTCGGAGTTTATATTCTTGCTTAGTTTTAGTGGTGGAGACTTGGTTGACTTAGCAGGTCCTTTACACTTGCTGACTTTTTTTTTTTGATGTACTCTTTTCCCATCATTGCAGATATTTCATACATTACCCATATATCAATAGATACTGTTGGTATAACAAAACAGAAGTTATTTTGAACCGTTTGTTTTGGCAGATTTTTGGTTTCACTGTTAATTTTGCAATTAACATATAATGTTTCATTTGCTGAAACTCATGCACGGTCTTTTTCTTGCCTAATCTTAATATACTTTTGGTTTTTTCTGCTTTAAGCAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAGGTATGAGAAATCTGCTTTCTCATTCTCCTTCCTTCTATCAGTCCTTCAATAACATTCCATTTATTTGATACAGGATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAG</genome_strand>
        <mrna_strand>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTACAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG.........................................................................GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCACCACTTCCTTACAGCTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2965" PGL_stop="3469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2965" e_stop="3469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2965" e_stop="3469" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2965" stop="3469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATG</gDNA_template>
            <first_frame> C  *  *  Q  P  T  K  L  R  M  R  H  I  L  F  R  V  P  P  P  T  N  T  S  H  F  P  L  P  P  L  P  P  N  Y  N  P  L  H  I  H  I  C  I  *  L  L  V  L  L  Q  E  S  L  I  Q  L  V  N  F  Q  F  *  K  L  G  T  C  F  F  L  N  W  G  *  L  H  V  G  F  L  N  F  D  L  M  N  F  L  P  R  C  L  S  Y  S  E  C  S  G  G  A  G  R  S  E  I  R  G  G  E  S  S  N  G  G  F  G  K  D  G  L  L  W  F  H  D  I  G  N  C  G  S  G  E  Y  S  M  A  I  V  Q  A  N  Q  V  L  E  D  Q  S  Q  I  E  S  G  P  F  G  T  F  V  G  V  Y  D  G  H  </first_frame>
            <second_frame>  V  N  S  S  R  Q  N  *  E  *  G  T  F  Y  F  V  F  L  L  Q  P  T  P  P  T  S  L  C  P  P  Y  P  Q  T  T  I  L  Y  I  Y  I  S  V  S  N  S  *  Y  C  F  K  K  V  *  F  N  L  *  I  F  N  F  E  S  W  V  L  V  F  F  *  I  G  V  S  S  M  W  D  S  *  I  L  I  *  *  I  S  F  Q  D  V  *  V  T  V  N  V  V  V  E  L  E  E  V  K  L  G  V  V  K  V  P  M  V  D  L  G  K  M  G  C  C  G  F  M  I  L  G  I  V  G  V  G  N  I  P  W  L  L  C  K  L  I  R  S  *  R  I  R  A  R  L  S  L  V  H  L  E  L  L  L  E  S  M  M  V  M </second_frame>
            <third_frame>   L  I  A  A  D  K  I  K  N  E  A  H  S  I  S  C  S  S  S  N  Q  H  L  P  L  P  S  A  P  L  T  P  K  L  Q  S  S  T  Y  T  Y  L  Y  L  T  L  S  I  A  S  R  K  F  D  S  T  C  K  F  S  I  L  K  V  G  Y  L  F  F  F  E  L  G  L  A  P  C  G  I  L  E  F  *  F  D  E  F  P  S  K  M  F  E  L  Q  *  M  *  W  W  S  W  K  K  *  N  *  G  W  *  K  F  Q  W  W  I  W  E  R  W  V  V  V  V  S  *  Y  W  E  L  W  E  W  G  I  F  H  G  Y  C  A  S  *  S  G  L  R  G  S  E  P  D  *  V  W  S  I  W  N  F  C  W  S  L  *  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3190" stop="3468"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHVGFLNFDLMNFLPRCLSYSECSGGAGRSEIRGGESSNGGFGKDGLLWFHDIGNCGSGEYSMAIVQANQVLEDQSQIESGPFGTFVGVYDGH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2967" stop="3215"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIAADKIKNEAHSISCSSSNQHLPLPSAPLTPKLQSSTYTYLYLTLSIASRKFDSTCKFSILKVGYLFFFELGLAPCGILEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3493" PGL_stop="7305"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3493" e_stop="3523"/>
            <exon e_start="4671" e_stop="5041"/>
            <exon e_start="5616" e_stop="5852"/>
            <exon e_start="7151" e_stop="7305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3493" e_stop="3523" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.830">
            <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4671" e_stop="5041" e_length="371"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5616" e_stop="5852" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5853" i_stop="7150" i_length="1298"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="7151" e_stop="7305" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3493" stop="3523"/>
              <exon start="4671" stop="5041"/>
              <exon start="5616" stop="5852"/>
              <exon start="7151" stop="7305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGTGATCACTTATTTCGACATTTCCAAG : CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG : GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAA : GGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGAT</gDNA_template>
            <first_frame> V  C  D  H  L  F  R  H  F  Q   : A  I  S  A  E  G  N  G  V  V  T  E  E  T  I  Q  R  A  F  L  E  T  E  R  G  F  T  S  V  V  S  E  N  W  H  S  R  P  Q  L  A  T  V  G  A  C  C  L  V  G  A  I  Y  Q  Q  T  L  F  V  A  N  L  G  D  S  R  V  V  L  G  K  K  V  G  N  T  G  E  I  A  A  M  Q  L  S  T  E  H  N  A  N  I  E  S  V  R  W  E  Q  K  D  L  H  P  N  D  P  Q  I  V  V  L  R  H  G  V  W  R  V  K  G  I  I  Q  :  V  S  R  S  I  G  D  V  Y  L  K  H  T  R  F  C  R  E  P  T  N  G  K  F  R  V  P  Q  P  L  N  M  P  I  L  L  A  T  P  T  I  L  K  H  P  L  H  P  N  D  S  F  L  I  F  A  S  D  G  L  W  E  H  L  S  N  E  K  A  V  E  I  V  K  S  H  P  R  K  :  G  S  A  K  R  L  V  K  A  A  L  H  V  A  A  K  K  R  E  M  R  Y  S  D  L  R  N  I  D  K  K  V  R  R  H  F  H  D  D  I  T  V  I  I  L  F  L  N  H  D  L   </first_frame>
            <second_frame>  F  V  I  T  Y  F  D  I  S  K  :  Q  Y  Q  L  K  E  M  V  *  S  Q  R  R  Q  F  K  G  P  F  L  R  Q  R  E  G  L  L  L  L  F  R  K  I  G  I  L  D  H  N  *  Q  Q  W  G  H  A  A  W  L  E  L  Y  I  S  R  H  S  L  *  Q  I  L  V  T  L  V  *  S  L  E  R  R  L  E  T  L  E  K  L  L  P  C  S  Y  Q  R  S  I  M  P  I  L  S  L  L  G  G  S  K  K  T  C  I  Q  M  I  L  K  L  L  F  L  D  M  V  F  G  G  *  K  E  *  F  R :   S  Q  D  P  L  V  M  F  I  L  N  T  Q  D  F  A  G  N  Q  Q  M  E  N  S  E  F  L  N  P  L  I  C  L  S  C  W  P  L  Q  Q  F  *  N  I  L  Y  I  Q  M  T  P  S  S  Y  L  L  L  M  V  Y  G  S  T  *  A  M  K  R  P  L  K  L  *  R  V  T  L  V  K :   E  V  Q  R  G  L  S  R  L  L  S  M  *  L  P  K  K  E  R  C  D  I  L  I  F  E  T  L  T  K  R  S  D  V  I  F  T  M  I  *  L  *  L  F  Y  S  *  T  M  T  *  </second_frame>
            <third_frame>   L  *  S  L  I  S  T  F  P  S :   N  I  S  *  R  K  W  C  S  H  R  G  D  N  S  K  G  L  S  *  D  R  E  R  V  Y  F  C  C  F  G  K  L  A  F  S  T  T  T  S  N  S  G  G  M  L  P  G  W  S  Y  I  S  A  D  T  L  C  S  K  S  W  *  L  S  C  S  P  W  K  E  G  W  K  H  W  R  N  C  C  H  A  A  I  N  G  A  *  C  Q  Y  *  V  C  *  V  G  A  K  R  L  A  S  K  *  S  S  N  C  C  S  *  T  W  C  L  E  G  K  R  N  N  S   : G  L  K  I  H  W  *  C  L  S  *  T  H  K  I  L  Q  G  T  N  K  W  K  I  Q  S  S  S  T  P  *  Y  A  Y  P  V  G  H  S  N  N  F  K  T  S  S  T  S  K  *  L  L  P  H  I  C  F  *  W  S  M  G  A  L  E  Q  *  K  G  R  *  N  C  E  E  S  P  S  *   : R  K  C  K  E  A  C  Q  G  C  S  P  C  S  C  Q  K  K  R  D  A  I  F  *  S  S  K  H  *  Q  K  G  P  T  S  F  S  R  *  Y  N  C  N  Y  F  I  L  K  P  *  P  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3493" stop="3523"/>
                    <exon start="4671" stop="5041"/>
                    <exon start="5616" stop="5852"/>
                    <exon start="7151" stop="7303"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCDHLFRHFQAISAEGNGVVTEETIQRAFLETERGFTSVVSENWHSRPQLATVGACCLVGAIYQQTLFVANLGDSRVVLGKKVGNTGEIAAMQLSTEHNANIESVRWEQKDLHPNDPQIVVLRHGVWRVKGIIQVSRSIGDVYLKHTRFCREPTNGKFRVPQPLNMPILLATPTILKHPLHPNDSFLIFASDGLWEHLSNEKAVEIVKSHPRKGSAKRLVKAALHVAAKKREMRYSDLRNIDKKVRRHFHDDITVIILFLNHDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18543" PGL_stop="16697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18543" e_stop="17456"/>
            <exon e_start="16832" e_stop="16697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.635" acc_prob="0.212" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18543" e_stop="17456" e_length="1088"/>
          </exon>
          <intron i_serial="1" don_prob="0.635" acc_prob="0.212">
            <gDNA_intron_boundary i_start="17455" i_stop="16833" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16832" e_stop="16697" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18543" stop="17456"/>
              <exon start="16832" stop="16697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAG : ACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGC</gDNA_template>
            <first_frame> R  K  L  V  T  T  M  A  D  K  M  R  E  E  I  K  I  V  R  T  C  E  E  E  V  C  G  C  T  N  K  K  V  *  E  A  D  Y  E  N  T  P  F  L  R  R  R  Y  V  R  Q  R  F  P  N  K  R  Y  S  P  S  L  D  Y  L  L  L  T  D  S  V  S  L  A  V  L  I  R  Q  C  R  L  I  A  S  S  S  G  L  R  K  *  *  S  V  L  T  P  H  K  S  K  L  G  V  G  Q  T  T  R  R  E  *  D  N  P  E  *  C  M  Y  R  M  K  Q  K  H  N  S  S  M  K  Y  K  A  R  L  V  I  K  G  F  Q  Q  K  A  C  I  N  L  L  R  F  S  P  L  *  L  N  Y  L  L  F  E  L  L  *  N  C  C  S  I  R  F  I  F  R  A  F  R  C  K  D  S  L  S  L  *  *  S  T  *  K  T  C  M  R  S  N  L  K  C  T  Y  R  L  I  R  K  I  W  C  V  D  *  R  R  V  S  M  V  *  N  K  H  Q  D  H  T  *  S  L  A  G  L  *  *  L  L  A  Y  L  V  *  *  *  S  L  F  L  L  Q  E  I  Y  K  F  V  H  H  F  A  P  V  Y  G  *  Y  V  G  D  R  L  K  H  V  W  D  H  K  T  E  G  A  N  V  *  *  I  F  *  *  R  I  W  D  W  K  L  K  E  T  G  *  S  *  V  R  R  N  R  L  K  K  *  F  L  K  R  L  N  I  W  D  A  K  L  V  H  F  K  K  I  *  K  Q  V  L  W  Q  V  T  *  I  G  I  V  F  G  K  R  R  S  *  L  C  L  K  E  R  I  L  R :   H  R  F  H  R  G  A  D  Y  K  V  L  L  Y  C  R  S  *  F  G  E  L  H  P  S  P  W  N  F  F  F  F  Q  L  E  F  F  L  I  Q  F  L  G  N  S </first_frame>
            <second_frame>  G  S  *  *  L  L  W  Q  T  R  *  G  K  K  L  R  *  F  G  H  V  K  R  R  C  A  D  A  P  I  K  R  C  E  R  L  T  M  R  T  H  R  F  C  E  E  G  M  *  D  R  G  F  L  T  N  D  I  L  L  L  L  I  T  C  Y  *  Q  I  Q  S  A  *  L  F  *  *  G  N  A  G  *  *  Q  V  Q  V  D  *  G  N  D  E  V  Y  S  L  H  I  N  Q  S  W  G  L  V  K  L  P  E  G  N  K  T  I  Q  N  N  V  C  T  G  *  N  R  S  I  I  V  Q  *  N  I  K  Q  G  W  *  *  K  V  F  N  K  R  H  V  S  I  Y  *  D  F  L  P  C  D  *  I  T  Y  Y  S  S  C  F  R  I  A  V  A  *  D  L  Y  L  E  H  L  D  V  R  T  A  S  L  Y  D  D  Q  H  E  R  R  V  C  V  A  T  *  S  V  H  T  G  *  *  E  K  Y  G  A  *  T  E  E  E  S  L  W  F  E  T  S  T  K  T  I  L  K  V  W  Q  V  Y  D  D  Y  W  L  T  W  Y  N  D  D  H  C  S  Y  F  K  K  F  I  N  S  Y  I  T  L  L  L  Y  M  D  D  M  L  V  T  G  *  N  M  C  G  I  T  K  L  K  E  Q  M  S  S  E  F  F  D  K  E  F  G  T  G  N  *  K  R  Q  V  E  A  E  S  E  E  I  D  *  K  N  N  S  *  R  G  *  T  F  G  M  P  S  W  C  T  S  R  K  S  E  S  K  S  F  G  R  S  L  E  L  G  L  F  L  A  S  V  E  V  N  F  V  *  K  K  E  S  *   : D  T  G  F  I  E  E  Q  I  T  K  C  C  F  I  A  E  V  D  L  V  S  S  T  L  H  R  G  I  S  S  F  F  S  *  N  F  F  *  F  S  F  W  G  I   </second_frame>
            <third_frame>   E  V  S  D  Y  Y  G  R  Q  D  E  G  R  N  *  D  S  S  D  M  *  R  G  G  V  R  M  H  Q  *  K  G  V  R  G  *  L  *  E  H  T  V  S  A  K  K  V  C  K  T  E  V  S  *  Q  T  I  F  S  F  S  *  L  L  V  T  N  R  F  S  Q  L  S  C  F  D  K  A  M  Q  V  D  S  K  F  K  W  I  E  E  M  M  K  C  T  H  S  T  *  I  K  V  G  G  W  S  N  Y  Q  K  G  I  R  Q  S  R  I  M  Y  V  Q  D  E  T  E  A  *  *  F  N  E  I  *  S  K  V  G  N  K  R  F  S  T  K  G  M  Y  Q  F  T  E  I  F  S  L  V  I  K  L  P  T  I  R  V  A  L  E  L  L  *  H  K  I  Y  I  *  S  I  *  M  *  G  Q  P  L  F  M  M  I  N  M  K  D  V  Y  A  *  Q  P  E  V  Y  I  Q  A  D  K  K  N  M  V  R  R  L  K  K  S  L  Y  G  L  K  Q  A  P  R  P  Y  L  K  F  G  R  F  M  M  T  I  G  L  L  G  I  M  M  I  T  V  L  T  S  R  N  L  *  I  R  T  S  L  C  S  C  I  W  M  I  C  W  *  Q  V  K  T  C  V  G  S  Q  N  *  R  S  K  C  L  V  N  F  L  I  K  N  L  G  L  E  I  E  R  D  R  L  K  L  S  Q  K  K  *  I  E  K  I  I  L  K  E  A  K  H  L  G  C  Q  V  G  A  L  Q  E  N  L  K  A  S  P  L  A  G  H  L  N  W  D  C  F  W  Q  A  *  K  L  T  L  F  E  R  K  N  L  E  :  T  Q  V  S  *  R  S  R  L  Q  S  V  A  L  L  Q  K  L  I  W  *  A  P  P  F  T  V  E  F  L  L  F  S  V  R  I  F  F  N  S  V  F  G  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17105" PGL_stop="17446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17105" e_stop="17248"/>
            <exon e_start="17299" e_stop="17446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="17105" e_stop="17248" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17249" i_stop="17298" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="17299" e_stop="17446" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17105" stop="17248"/>
              <exon start="17299" stop="17446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATAACCATGCATAAGAGAGTACATTATGGCTGTTGTCACTATGAAAGACGACACAATTCTTGATGGGATATGTTGTCTTTTCTTGGTCATCTTTCCAGGGAATTAGGTACTGTTTTAGGGCTGAAAAGAGTTACCACAAAGC : AAAATAGAGCACGAGAAAGACTCATTCAATGATGCGCAATGTGAGCTCACTCATTCCAGTTTAGCTCACATTAATACTTTAGAAACATTAATTCAAATAACTTATGGGACATGATCTCTTCAGGAAAGAACTTTAGTAAGAACAAGTC</gDNA_template>
            <first_frame> S  *  P  C  I  R  E  Y  I  M  A  V  V  T  M  K  D  D  T  I  L  D  G  I  C  C  L  F  L  V  I  F  P  G  N  *  V  L  F  *  G  *  K  E  L  P  Q  S  :  K  I  E  H  E  K  D  S  F  N  D  A  Q  C  E  L  T  H  S  S  L  A  H  I  N  T  L  E  T  L  I  Q  I  T  Y  G  T  *  S  L  Q  E  R  T  L  V  R  T  S  </first_frame>
            <second_frame>  H  N  H  A  *  E  S  T  L  W  L  L  S  L  *  K  T  T  Q  F  L  M  G  Y  V  V  F  S  W  S  S  F  Q  G  I  R  Y  C  F  R  A  E  K  S  Y  H  K  A :   K  *  S  T  R  K  T  H  S  M  M  R  N  V  S  S  L  I  P  V  *  L  T  L  I  L  *  K  H  *  F  K  *  L  M  G  H  D  L  F  R  K  E  L  *  *  E  Q  V </second_frame>
            <third_frame>   I  T  M  H  K  R  V  H  Y  G  C  C  H  Y  E  R  R  H  N  S  *  W  D  M  L  S  F  L  G  H  L  S  R  E  L  G  T  V  L  G  L  K  R  V  T  T  K   : Q  N  R  A  R  E  R  L  I  Q  *  C  A  M  *  A  H  S  F  Q  F  S  S  H  *  Y  F  R  N  I  N  S  N  N  L  W  D  M  I  S  S  G  K  N  F  S  K  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21493" PGL_stop="20508"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21493" e_stop="20508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="21493" e_stop="20508" e_length="986"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21493" stop="20508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318926" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAATTAAACCGATTAAAATT</gDNA_template>
            <first_frame> I  F  S  H  L  *  I  Y  P  S  T  L  A  R  F  A  K  L  K  S  L  R  A  L  F  K  R  S  I  Q  T  E  I  V  Y  I  D  L  H  *  K  W  R  I  P  L  E  G  R  V  G  Q  C  C  L  N  R  R  L  R  G  Q  S  H  L  P  A  G  S  V  T  P  P  P  Q  Q  L  M  R  C  R  S  L  R  T  A  T  L  A  F  I  P  L  R  R  P  A  V  S  T  D  R  L  L  R  R  A  *  I  F  T  L  W  R  R  *  I  L  R  L  A  L  G  S  P  L  T  D  P  F  L  L  G  V  P  W  R  C  L  N  V  I  R  W  F  G  S  R  S  R  R  G  R  A  Y  A  H  L  R  R  I  L  V  R  S  G  V  V  C  I  R  M  *  R  I  L  L  R  F  R  I  P  L  A  D  *  M  H  G  D  R  R  *  Q  I  H  W  C  V  S  V  L  L  K  V  I  *  *  N  E  L  W  L  L  L  L  G  H  R  R  I  I  R  D  V  E  V  T  F  N  R  V  L  A  G  F  P  E  C  P  K  L  I  T  C  E  I  S  V  V  T  G  W  *  F  S  Y  I  N  *  G  S  S  L  E  S  F  P  A  A  A  S  D  P  G  C  G  S  Y  Y  S  G  E  M  K  A  V  G  Q  F  *  C  S  M  E  V  V  E  F  S  L  V  H  M  V  L  L  Q  *  L  I  A  I  E  R  T  I  W  T  F  K  I  *  L  N  R  L  K   </first_frame>
            <second_frame>  S  S  P  T  Y  K  F  T  L  R  H  S  L  G  L  P  N  *  K  A  L  G  H  F  L  R  D  L  Y  K  Q  K  L  F  I  *  I  F  T  E  N  G  E  F  L  *  K  A  E  W  A  S  V  A  *  I  G  V  *  E  V  N  L  T  Y  R  Q  V  L  *  H  H  H  H  S  N  *  C  D  V  V  R  F  V  Q  Q  L  *  L  L  F  L  S  V  D  R  L  F  Q  P  I  G  F  S  D  A  R  E  S  S  R  S  G  A  G  E  F  F  A  *  R  *  V  L  H  *  Q  I  H  F  S  S  A  F  H  G  G  V  S  T  *  S  G  G  S  E  A  D  P  E  E  D  V  L  M  L  T  Y  D  A  S  W  F  V  Q  V  *  Y  A  *  E  C  E  E  Y  S  F  D  F  V  F  P  *  P  I  E  C  T  E  I  G  D  D  K  F  T  G  A  Y  L  F  C  *  R  *  F  S  E  T  S  F  G  C  S  Y  *  A  I  V  A  S  S  E  T  S  R  *  L  S  T  A  S  *  P  A  F  Q  N  V  Q  S  *  *  P  V  K  F  P  W  *  Q  V  G  D  F  H  I  L  T  E  A  H  L  L  R  V  F  R  R  R  R  L  I  L  A  A  V  L  T  T  P  V  K  *  K  L  *  G  N  F  D  A  V  W  K  *  *  N  S  P  L  Y  I  W  F  C  C  S  N  *  L  Q  L  K  G  Q  F  G  L  L  K  S  N  *  T  D  *  N  </second_frame>
            <third_frame>   L  L  P  P  I  N  L  P  F  D  T  R  *  V  C  Q  T  E  K  P  *  G  T  F  *  E  I  Y  T  N  R  N  C  L  Y  R  S  S  L  K  M  A  N  S  S  R  R  P  S  G  P  V  L  L  K  S  A  F  E  R  S  I  S  P  T  G  R  F  C  N  T  T  T  T  A  T  D  A  M  S  F  A  S  Y  S  N  S  S  F  Y  S  S  P  S  T  G  C  F  N  R  S  A  S  P  T  R  V  N  L  H  A  L  A  P  V  N  S  S  P  S  V  R  F  S  I  D  R  S  I  S  P  R  R  S  M  A  V  S  Q  R  D  Q  V  V  R  K  Q  I  P  K  R  T  C  L  C  S  P  T  T  H  P  G  S  F  R  C  S  M  H  K  N  V  K  N  T  P  S  I  S  Y  S  P  S  R  L  N  A  R  R  S  A  M  T  N  S  L  V  R  I  C  S  V  E  G  D  L  V  K  R  A  L  A  A  L  I  R  P  S  S  H  H  Q  R  R  R  G  D  F  Q  P  R  P  S  R  L  S  R  M  S  K  A  D  N  L  *  N  F  R  G  N  R  L  V  I  F  I  Y  *  L  R  L  I  S  *  E  F  S  G  G  G  V  *  S  W  L  R  F  L  L  L  R  *  N  E  S  C  R  A  I  L  M  Q  Y  G  S  S  R  I  L  P  C  T  Y  G  F  V  A  V  T  D  C  N  *  K  D  N  L  D  F  *  N  L  I  K  P  I  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21416" stop="20757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIYTNRNCLYRSSLKMANSSRRPSGPVLLKSAFERSISPTGRFCNTTTTATDAMSFASYSNSSFYSSPSTGCFNRSASPTRVNLHALAPVNSSPSVRFSIDRSISPRRSMAVSQRDQVVRKQIPKRTCLCSPTTHPGSFRCSMHKNVKNTPSISYSPSRLNARRSAMTNSLVRICSVEGDLVKRALAALIRPSSHHQRRRGDFQPRPSRLSRMSKADNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48621" PGL_stop="40950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48621" e_stop="48572"/>
            <exon e_start="47086" e_stop="46794"/>
            <exon e_start="44430" e_stop="44094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48621" e_stop="48572" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.940">
            <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47086" e_stop="46794" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.820">
            <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="44430" e_stop="44094" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48621" stop="48572"/>
              <exon start="47086" stop="46794"/>
              <exon start="44430" stop="44094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48621" stop="48572"/>
              <exon start="47086" stop="46794"/>
              <exon start="44430" stop="44127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG : GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</gDNA_template>
            <first_frame> K  L  I  V  F  K  V  E  P  L  L  T  M  L  F  I  R :   K  V  D  K  I  M  L  M  V  E  K  R  I  T  I  G  *  Y  H  Y  L  N  L  N  G  V  A  F  K  W  L  F  *  G  K  Y  F  Y  Q  L  F  V  V  E  I  L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  C  I  L  F  H  F  I  P  P  N  R  I  *  *  N  V  I  M  G  E  M  I  G  G  Q  G  L  L  L  Q  D  L  L  F  T  H  L  S  A  K  G  S  Q  V  K  A  V  S  R  S  *  F  G  L  W  V  K  Q  Y  K  C  L  L  S  W  Q  I  L  V  V  L  I  *  R  S  I  V  Y  I  Y  L  *  I  L  G  I  L  M  L  F  P  S  V  L  V  C  L  L  I  P  P  K  *  L  H  Y  L  E  F  L  L   </first_frame>
            <second_frame>  S  L  S  C  S  K  *  S  L  Y  *  P  C  S  L  S   : G  K  W  T  K  S  C  *  W  W  K  S  A  S  Q  L  D  S  I  T  I  *  I  S  M  E  *  H  S  N  G  C  F  E  G  N  T  S  I  S  C  S  W  W  R  S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  A  F  F  S  T  S  F  L  P  T  G  Y  S  K  T  *  S  W  E  R  *  L  V  G  R  V  C  S  F  R  T  F  Y  L  H  T  F  Q  Q  R  G  A  K  S  K  Q  *  A  G  A  D  L  G  C  G  *  S  S  T  S  V  C  *  V  G  K  S  L  W  F  *  F  E  G  R  *  Y  I  S  I  C  K  F  W  E  F  *  C  F  S  H  Q  C  *  S  A  S  *  F  L  Q  S  D  C  I  I  W  N  S  Y  *  </second_frame>
            <third_frame>   A  Y  R  V  Q  S  R  A  S  T  D  H  A  L  Y  Q  :  E  S  G  Q  N  H  V  D  G  G  K  A  H  H  N  W  I  V  S  L  F  E  S  Q  W  S  S  I  Q  M  V  V  L  R  E  I  L  L  S  A  V  R  G  G  D  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   L  H  S  F  P  L  H  S  S  Q  Q  D  I  V  K  R  N  H  G  R  D  D  W  W  A  G  S  A  P  S  G  P  F  I  Y  T  P  F  S  K  G  E  P  S  Q  S  S  K  Q  E  L  I  W  V  V  G  E  A  V  Q  V  F  V  E  L  A  N  P  C  G  F  D  L  K  V  D  S  I  Y  L  S  V  N  S  G  N  F  D  A  F  P  I  S  V  S  L  P  P  N  S  S  K  V  I  A  L  S  G  I  P  T  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48619" stop="48572"/>
                    <exon start="47086" stop="46794"/>
                    <exon start="44430" stop="44094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYRVQSRASTDHALYQESGQNHVDGGKAHHNWIVSLFESQWSSIQMVVLREILLSAVRGGDPLTAWSAAARLLRSYYPLITPAGQNGLASALSNASERLPSGTRCADPALPFIRLHSFPLHSSQQDIVKRNHGRDDWWAGSAPSGPFIYTPFSKGEPSQSSKQELIWVVGEAVQVFVELANPCGFDLKVDSIYLSVNSGNFDAFPISVSLPPNSSKVIALSGIPTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46952" e_stop="46794"/>
            <exon e_start="42590" e_stop="41682"/>
            <exon e_start="41429" e_stop="40950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46952" e_stop="46794" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="46793" i_stop="42591" i_length="4203"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="42590" e_stop="41682" e_length="909"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="41429" e_stop="40950" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46952" stop="46794"/>
              <exon start="42590" stop="42030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42123" stop="41682"/>
              <exon start="41429" stop="40950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG : GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCT</gDNA_template>
            <first_frame> S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  H  L  L  M  L  E  M  H  Q  *  M  D  L  F  L  P  V  G  D  W  L  F  P  L  I  Y  V  F  H  R  G  Y  L  L  *  R  L  V  C  Y  Q  W  R  S  L  L  M  L  V  R  I  I  Q  M  F  K  W  K  P  V  L  L  K  N  P  L  V  L  I  G  S  *  K  L  I  L  T  E  E  V  G  A  C  V  S  S  S  L  S  Y  P  I  R  L  M  L  S  S  R  L  A  C  L  S  I  W  R  I  L  T  M  R  R  I  L  S  M  T  I  L  K  Q  G  L  T  E  I  T  L  P  G  C  *  Y  H  *  N  I  L  S  Y  L  F  L  M  V  L  T  W  L  R  S  L  K  W  I  G  P  V  L  E  N  Q  A  S  L  R  K  V  A  K  L  N  L  M  L  P  S  K  I  *  F  L  K  S  K  S  G  G  N  L  A  E  T  I  Q  E  N  *  T  *  K  M  Q  Y  R  L  R  F  N  H  P  *  W  M  Y  Y  Y  L  I  H  *  P  L  G  L  G  V  A  I  I  L  H  K  I  L  L  T  L  I  W  M  K  D  L  I  F  R  V  R  V  K  V  Q  *  K  L  M  T  R  H  Q  *  K  C  W  F  A  I  I  P  R  K  *  L  E  S  V  L  A  S  H  A  E  I  *  L  G  R  T  V  S  R  V  I  K  R  Q  C  Y  G  Q  :  V  F  *  M  V  S  P  W  R  Y  L  H  *  R  N  I  D  I  R  S  P  C  I  S  W  F  Q  V  S  T  H  F  *  L  L  L  *  L  M  M  L  M  K  C  S  E  P  E  Q  E  L  I  H  V  M  S  P  Y  F  V  V  G  H  R  S  I  S  E  *  M  G  L  C  D  I  L  I  E  V  S  I  V  Y  *  T  R  *  N  F  P  A  S  T  I  C  R  T  C  Y  L  H  F  V  F  L  V  I  P  P  Y  I  E  V  H  F  V  *  E  K  T  V  S  L  S  F  Q  L  I  Y  N  R  I  L  Q  *  F  V  K  L  Y  Y  S  M  K  S  W  T  F  I  P  A  I  Y  S  F  M  I  L  L  P </first_frame>
            <second_frame>  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   S  T  Y  L  C  W  R  C  I  N  K  W  I  Y  S  S  R  *  A  I  G  C  S  P  *  Y  M  C  F  T  G  V  I  S  Y  E  G  S  F  V  I  N  G  D  P  C  S  C  W  *  G  S  F  K  C  S  S  G  N  Q  F  C  *  R  I  P  S  Y  *  *  V  H  E  N  *  S  L  Q  R  K  L  G  P  A  F  P  R  A  *  V  I  Q  S  D  *  C  C  L  R  D  W  R  V  C  Q  Y  G  G  F  *  Q  *  G  E  S  *  V  *  L  S  *  N  K  D  *  Q  R  L  H  C  Q  G  A  N  T  I  R  T  F  *  V  T  C  S  *  W  Y  L  P  G  *  G  V  S  N  G  *  D  Q  Y  *  K  I  K  L  L  *  E  K  *  Q  S  *  T  *  C  F  H  Q  K  F  N  F  *  N  Q  S  Q  V  A  I  W  P  K  Q  F  R  R  T  K  H  K  R  C  N  T  G  C  A  S  I  I  H  D  G  C  I  T  T  *  S  I  D  L  W  V  *  V  W  Q  *  Y  F  T  K  F  F  *  P  *  Y  G  *  R  I  *  Y  S  G  C  A  *  R  F  S  K  S  S  *  H  D  T  S  R  S  A  G  S  Q  *  Y  Q  G  N  D  *  S  Q  S  *  H  H  M  Q  R  Y  S  W  G  E  L  C  R  G  *  *  S  D  S  A  M  G  R :   C  S  E  W  Y  H  H  G  G  T  S  I  E  G  I  *  T  F  V  L  L  V  F  P  G  S  R  *  V  H  T  F  S  C  C  C  D  *  *  C  *  *  N  A  P  S  Q  S  K  S  *  F  M  *  *  V  H  I  L  S  W  A  T  V  P  Y  P  S  E  W  D  Y  V  I  S  L  L  K  C  P  *  F  T  K  P  G  E  T  F  Q  P  Q  L  F  V  E  L  V  I  C  T  S  Y  F  L  *  F  L  L  I  *  R  S  I  L  F  R  R  K  L  Y  H  S  V  S  N  *  Y  T  I  G  F  Y  S  D  L  *  S  Y  I  I  Q  *  R  A  G  H  L  F  L  Q  F  I  A  L  *  F  C  C   </second_frame>
            <third_frame>   L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  P  L  T  Y  A  G  D  A  S  I  N  G  S  I  P  P  G  R  R  L  V  V  P  L  N  I  C  V  S  Q  G  L  S  L  M  K  A  R  L  L  S  M  E  I  P  A  H  V  G  E  D  H  S  N  V  Q  V  E  T  S  S  A  E  E  S  P  R  T  D  R  F  M  K  I  D  P  Y  R  G  S  W  G  L  R  F  L  E  L  E  L  S  N  P  T  D  V  V  F  E  I  G  V  S  V  N  M  E  D  S  N  N  E  E  N  P  E  Y  D  Y  P  K  T  R  I  D  R  D  Y  T  A  R  V  L  I  P  L  E  H  F  K  L  P  V  L  D  G  T  Y  L  V  K  E  S  Q  M  D  R  T  S  T  R  K  S  S  F  S  E  K  S  S  K  A  E  L  N  A  S  I  K  N  L  I  S  K  I  K  V  R  W  Q  S  G  R  N  N  S  G  E  L  N  I  K  D  A  I  Q  A  A  L  Q  S  S  M  M  D  V  L  L  P  D  P  L  T  F  G  F  R  C  G  N  N  T  S  Q  N  S  S  D  L  N  M  D  E  G  S  N  I  Q  G  A  R  K  G  S  V  K  A  H  D  T  T  P  V  E  V  L  V  R  N  N  T  K  E  M  I  R  V  S  L  S  I  T  C  R  D  I  A  G  E  N  C  V  E  G  D  K  A  T  V  L  W  A   : G  V  L  N  G  I  T  M  E  V  P  P  L  K  E  Y  R  H  S  F  S  L  Y  F  L  V  P  G  E  Y  T  L  L  A  A  A  V  I  D  D  A  N  E  M  L  R  A  R  A  R  A  N  S  C  D  E  S  I  F  C  R  G  P  P  F  H  I  R  V  N  G  T  M  *  Y  P  Y  *  S  V  H  S  L  L  N  Q  V  K  L  S  S  L  N  Y  L  *  N  L  L  F  A  L  R  I  S  C  N  S  S  L  Y  R  G  P  F  C  L  G  E  N  C  I  T  Q  F  P  I  D  I  Q  *  D  S  T  V  I  C  K  A  I  L  F  N  E  E  L  D  I  Y  S  C  N  L  *  L  Y  D  F  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46794" stop="41682"/>
                    <exon start="41429" stop="41209"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPLTYAGDASINGSIPPGRRLVVPLNICVSQGLSLMKARLLSMEIPAHVGEDHSNVQVETSSAEESPRTDRFMKIDPYRGSWGLRFLELELSNPTDVVFEIGVSVNMEDSNNEENPEYDYPKTRIDRDYTARVLIPLEHFKLPVLDGTYLVKESQMDRTSTRKSSFSEKSSKAELNASIKNLISKIKVRWQSGRNNSGELNIKDAIQAALQSSMMDVLLPDPLTFGFRCGNNTSQNSSDLNMDEGSNIQGARKGSVKAHDTTPVEVLVRNNTKEMIRVSLSITCRDIAGENCVEGDKATVLWAGVLNGITMEVPPLKEYRHSFSLYFLVPGEYTLLAAAVIDDANEMLRARARANSCDESIFCRGPPFHIRVNGTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45125" e_stop="44523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45125" e_stop="44523" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45125" stop="44523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</gDNA_template>
            <first_frame> S  N  P  S  I  H  V  Y  V  N  F  E  *  N  V  L  C  *  I  R  S  M  L  V  M  L  V  F  L  H  G  L  L  Y  *  T  L  L  T  R  S  C  L  K  D  N  Q  I  A  F  V  K  A  G  C  T  S  A  F  I  V  L  H  I  T  Y  *  I  M  P  E  R  C  S  N  Y  L  F  E  G  Q  Y  M  Y  *  P  Y  L  Q  H  I  V  R  S  L  L  I  S  S  *  N  Q  K  N  S  N  S  I  R  N  N  L  F  F  I  I  R  T  I  L  L  M  Y  S  C  S  *  H  T  I  T  N  G  G  K  L  A  K  D  Y  L  E  L  L  S  L  V  S  L  E  R  S  K  F  N  L  V  R  S  S  *  F  L  Q  I  L  L  L  L  V  L  L  F  Q  N  D  L  P  A  Y  *  Y  S  R  F  Y  G  I  C  S  C  W  L  I  S  F  L  R  L  I  L </first_frame>
            <second_frame>  P  I  Q  A  S  M  Y  M  *  I  L  S  E  M  F  Y  A  E  S  E  V  C  W  *  C  W  Y  F  F  M  V  Y  C  I  R  H  C  *  L  D  L  A  *  K  I  I  K  L  P  L  *  R  L  V  V  L  Q  R  L  L  Y  C  T  L  L  T  R  S  C  L  K  D  A  Q  I  T  C  L  K  A  N  T  C  I  D  H  I  F  S  I  *  L  G  V  Y  *  *  A  H  K  I  R  R  I  L  I  P  S  G  I  T  F  F  L  S  *  E  L  F  F  *  C  I  P  V  A  N  I  L  L  L  M  V  V  N  L  Q  K  T  I  W  N  F  F  H  *  S  L  *  K  E  V  N  L  I  W  F  D  L  H  S  S  F  R  F  Y  Y  Y  *  F  C  C  F  R  M  I  F  P  H  T  D  T  L  D  F  M  V  S  A  V  A  G  L  F  L  S  S  D  *  Y   </second_frame>
            <third_frame>   Q  S  K  H  P  C  I  C  K  F  *  V  K  C  S  M  L  N  Q  K  Y  V  G  D  A  G  I  S  S  W  F  I  V  L  D  T  A  N  *  I  L  L  E  R  *  S  N  C  L  C  K  G  W  L  Y  F  S  V  Y  C  I  A  H  Y  L  L  D  H  A  *  K  M  L  K  L  P  V  *  R  P  I  H  V  L  T  I  S  S  A  Y  S  *  E  F  T  D  K  L  I  K  S  E  E  F  *  F  H  Q  E  *  P  F  F  Y  H  K  N  Y  S  F  N  V  F  L  *  L  T  Y  Y  Y  *  W  W  *  T  C  K  R  L  F  G  T  S  F  T  S  L  S  R  K  K  *  I  *  S  G  S  I  F  I  V  P  S  D  F  T  I  I  S  F  A  V  S  E  *  S  S  R  I  L  I  L  *  I  L  W  Y  L  Q  L  L  A  Y  F  F  P  Q  T  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="54678" PGL_stop="48760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54678" e_stop="54641"/>
            <exon e_start="53262" e_stop="53043"/>
            <exon e_start="52938" e_stop="52756"/>
            <exon e_start="51167" e_stop="51058"/>
            <exon e_start="49898" e_stop="49839"/>
            <exon e_start="48857" e_stop="48760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54678" e_stop="54641" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53262" e_stop="53043" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.949">
            <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52938" e_stop="52756" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51167" e_stop="51058" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51057" i_stop="49899" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49898" e_stop="49839" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49838" i_stop="48858" i_length="981"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="48857" e_stop="48760" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54678" stop="54641"/>
              <exon start="53262" stop="53043"/>
              <exon start="52938" stop="52756"/>
              <exon start="51167" stop="51058"/>
              <exon start="49898" stop="49839"/>
              <exon start="48857" stop="48760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG : CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG : GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG : ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG : AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG : GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGGAGCAAAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</gDNA_template>
            <first_frame> F  S  G  A  S  H  F  A  P  V  T  L  S :   *  R  M  K  A  S  R  G  A  T  *  F  C  F  P  L  L  I  V  K  L  K  N  S  T  C  K  L  *  C  K  I  L  L  P  H  C  *  *  N  L  K  N  Q  F  F  K  Q  S  L  V  E  L  F  S  R  H  L  *  I  P  K  R  V  L  A  Q  R  R  F  I  F  *  :  V  I  K  A  K  K  R  R  L  G  R  A  Q  K  T  I  G  D  Y  C  L  L  A  G  S  P  V  D  A  N  A  H  Y  T  T  S  L  E  L  A  R  L  T  G  D  F  F  W  Y  A  G  A  M  E  G  S  V  C  A  L  L  :  I  D  Q  M  G  Q  R  D  Q  F  L  D  D  E  V  K  H  R  Y  N  N  V  I  L  H  Y  R  K  S  F  I  Q  D  N  A  Q  R :   V  S  P  L  S  F  E  L  E  A  T  L  K  L  A  R  Y  L  C  R :   K  E  L  A  K  E  V  V  D  L  L  T  T  A  A  D  G  A  K  S  L  I  D  A  S  D  R  L  I  L  F  I  </first_frame>
            <second_frame>  S  A  V  L  R  I  L  P  R  *  L  S   : A  R  G  *  K  L  Q  G  E  Q  L  N  F  V  S  P  C  *  S  S  N  S  R  I  P  L  A  N  Y  D  A  R  Y  C  C  L  I  V  D  E  I  *  K  I  S  S  S  S  R  V  W  W  N  Y  S  Q  D  T  F  R  F  P  S  E  S  *  L  R  G  G  S  Y  F  R :   S  S  R  L  K  N  E  D  W  A  V  H  R  K  L  S  G  I  T  V  C  W  Q  G  H  L  L  M  L  M  P  I  I  Q  L  H  W  S  L  L  D  *  L  E  T  S  F  G  M  L  G  Q  W  K  A  V  F  V  L  C  * :   *  I  K  W  V  R  G  I  N  F  *  M  M  R  S  S  T  V  T  I  M  S  F  C  I  T  E  S  H  L  F  K  T  M  L  K   : E  F  L  L  *  V  S  S  L  R  L  L  S  N  *  H  D  T  S  A   : G  R  S  W  P  R  K  W  L  I  C  *  L  R  L  L  M  E  Q  N  L  *  L  M  L  V  T  D  *  Y  Y  S  L </second_frame>
            <third_frame>   Q  R  C  F  A  F  C  P  G  D  S  Q  :  L  E  D  E  S  F  K  G  S  N  L  I  L  F  P  P  A  D  R  Q  T  Q  E  F  H  L  Q  T  M  M  Q  D  I  A  A  S  L  L  M  K  F  E  K  S  V  L  Q  A  E  S  G  G  T  I  L  K  T  P  L  D  S  Q  A  S  L  S  S  E  E  V  H  I  L   : G  H  Q  G  *  K  T  K  I  G  P  C  T  E  N  Y  R  G  L  L  S  V  G  R  V  T  C  *  C  *  C  P  L  Y  N  F  I  G  A  C  *  I  D  W  R  L  L  L  V  C  W  G  N  G  R  Q  C  L  C  S  V   : D  R  S  N  G  S  E  G  S  I  S  R  *  *  G  Q  A  P  L  Q  *  C  H  F  A  L  Q  K  V  I  Y  S  R  Q  C  S  K  :  S  F  S  S  K  F  R  A  *  G  Y  S  Q  I  S  T  I  P  L  Q  :  E  G  V  G  Q  G  S  G  *  F  V  D  Y  G  C  *  W  S  K  I  F  D  *  C  *  *  Q  I  D  I  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52938" stop="52756"/>
                    <exon start="51167" stop="51058"/>
                    <exon start="49898" stop="49839"/>
                    <exon start="48857" stop="48761"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYTTSLELARLTGDFFWYAGAMEGSVCALLIDQMGQRDQFLDDEVKHRYNNVILHYRKSFIQDNAQRVSPLSFELEATLKLARYLCRKELAKEVVDLLTTAADGAKSLIDASDRLILFI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54676" stop="54641"/>
                    <exon start="53262" stop="53043"/>
                    <exon start="52938" stop="52925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRCFAFCPGDSQLEDESFKGSNLILFPPADRQTQEFHLQTMMQDIAASLLMKFEKSVLQAESGGTILKTPLDSQASLSSEEVHILGHQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="61229" PGL_stop="62015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61229" e_stop="61835"/>
            <exon e_start="61926" e_stop="62015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61229" e_stop="61835" e_length="607"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="61926" e_stop="62015" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61229" stop="61835"/>
              <exon start="61926" stop="62015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG : ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAG</gDNA_template>
            <first_frame> I  L  I  E  *  V  S  H  *  H  F  T  L  T  A  P  L  F  I  L  E  Y  S  W  N  Y  L  L  F  S  Y  A  F  K  N  N  N  S  N  V  L  H  S  N  L  A  N  I  F  *  T  F  F  I  *  T  C  S  S  S  R  K  R  N  I  I  N  V  L  *  H  F  D  H  N  L  T  *  P  I  F  *  D  I  L  C  *  V  F  I  *  I  C  S  F  S  *  M  R  D  I  V  N  A  L  K  H  F  D  G  S  I  A  T  I  T  L  L  L  P  S  G  T  V  L  H  P  T  *  L  F  I  S  W  Y  F  S  L  F  I  T  *  A  E  H  V  D  *  E  E  S  A  *  A  N  V  T  C  C  C  I  I  M  P  K  K  E  V  *  K  C  H  I  F  G  G  C  E  G  S  Y  *  *  V  Y  T  C  L  N  G  *  T  R  I  L  L  *  E  D  H  Q  *   : D  V  W  D  V  *  N  C  R  *  K  K  C  *  S  K  G  G  *  E  L  T  S  S  P  N  C  C  I  *  </first_frame>
            <second_frame>  F  *  *  N  K  L  V  I  N  I  L  H  *  L  H  H  Y  S  Y  W  S  I  R  G  T  I  F  F  F  L  M  P  L  K  I  I  I  L  M  Y  F  I  L  T  *  L  I  Y  F  R  H  F  L  S  R  L  A  P  P  L  G  R  G  T  *  L  M  Y  Y  N  T  L  T  I  T  *  P  S  Q  Y  F  K  T  Y  S  A  K  S  L  F  R  F  A  L  S  L  E  *  G  T  *  L  M  L  *  N  T  L  T  V  A  L  L  L  *  H  Y  F  C  L  L  A  Q  F  C  T  Q  L  S  C  L  Y  H  G  I  S  H  Y  L  *  H  K  Q  N  M  S  T  E  K  S  P  L  E  Q  T  S  P  A  V  A  S  S  C  R  K  K  K  S  E  S  A  T  F  L  E  D  V  K  D  H  I  D  E  F  I  H  A  S  M  D  E  H  A  S  C  F  K  K  T  I  N  K  :  M  F  G  M  S  K  I  V  A  E  R  N  A  E  A  K  E  V  E  S  S  L  P  L  Q  T  V  V  S  E </second_frame>
            <third_frame>   F  D  R  I  S  *  S  L  T  F  Y  I  D  C  T  I  I  H  I  G  V  F  V  E  L  S  S  F  F  L  C  L  *  K  *  *  F  *  C  T  S  F  *  P  S  *  Y  I  L  D  I  F  Y  L  D  L  L  L  L  S  E  E  E  H  N  *  C  T  I  T  L  *  P  *  P  N  L  A  N  I  L  R  H  T  L  L  S  L  Y  L  D  L  L  F  L  L  N  E  G  H  S  *  C  S  K  T  L  *  R  *  H  C  Y  Y  N  I  T  S  A  F  W  H  S  S  A  P  N  L  A  V  Y  I  M  V  F  L  T  I  Y  N  I  S  R  T  C  R  L  R  R  V  R  L  S  K  R  H  L  L  L  H  H  H  A  E  K  R  S  L  K  V  P  H  F  W  R  M  *  R  I  I  L  M  S  L  Y  M  P  Q  W  M  N  T  H  L  A  L  R  R  P  S  I  R :   C  L  G  C  L  K  L  S  L  K  E  M  L  K  Q  R  R  L  R  A  H  F  L  S  K  L  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61650" stop="61835"/>
                    <exon start="61926" stop="62015"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKQNMSTEKSPLEQTSPAVASSCRKKKSESATFLEDVKDHIDEFIHASMDEHASCFKKTINKMFGMSKIVAERNAEAKEVESSLPLQTVVSE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61561" stop="61761"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCYYNITSAFWHSSAPNLAVYIMVFLTIYNISRTCRLRRVRLSKRHLLLHHHAEKRSLKVPHFWRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62146" PGL_stop="62728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62146" e_stop="62728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="62146" e_stop="62728" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62146" stop="62728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATGCTCTTGCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAGACATGTCTAGATAAACAAAATAAATGGGCACAACAATTTGAGATGCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATTTGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAACTAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACTAGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGAGTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAATAA</gDNA_template>
            <first_frame> E  M  L  L  P  E  K  L  C  C  F  L  H  L  L  V  L  P  N  I  R  H  V  *  I  N  K  I  N  G  H  N  N  L  R  C  S  C  L  R  S  L  A  A  F  Y  I  C  L  F  Y  H  T  L  D  M  S  R  *  T  K  *  M  G  T  T  I  *  E  A  L  A  *  E  V  M  L  L  F  M  S  V  G  F  A  T  H  *  T  C  L  D  F  F  F  K  K  K  T  N  G  H  Y  N  N  L  M  N  P  H  S  D  C  W  I  L  C  F  M  V  C  A  L  P  F  L  S  T  S  N  *  L  *  L  W  T  I  L  Y  A  C  S  L  V  T  C  V  F  R  D  I  I  R  G  F  D  P  G  L  D  G  G  V  F  K  I  R  L  *  W  C  P  D  K  M  Y  A  S  T  I  S  Q  R  T  R  S  L  N  S  T  R  T  G  I  </first_frame>
            <second_frame>  R  C  S  C  L  R  S  C  A  A  F  Y  I  C  W  F  Y  Q  T  L  D  M  S  R  *  T  K  *  M  G  T  T  I  *  D  A  L  A  *  E  V  L  L  L  F  T  S  V  C  F  T  T  H  *  T  C  L  D  K  Q  N  K  W  V  Q  Q  F  E  R  L  L  P  K  K  L  C  C  F  L  C  L  L  V  L  P  H  I  R  H  V  *  I  F  F  L  K  K  K  L  M  G  I  T  I  T  *  *  I  L  I  V  I  V  G  S  F  V  L  W  F  V  L  F  L  F  C  R  H  L  T  S  F  S  F  G  P  Y  S  M  L  V  L  *  L  H  A  Y  L  E  I  S  S  E  G  L  I  Q  A  W  M  V  E  F  S  K  Y  A  C  N  G  A  L  I  R  C  M  R  P  R  S  V  N  G  P  G  P  L  T  Q  Q  E  Q  E  * </second_frame>
            <third_frame>   D  A  L  A  *  E  V  V  L  L  F  T  S  V  G  F  T  K  H  *  T  C  L  D  K  Q  N  K  W  A  Q  Q  F  E  M  L  L  P  K  K  S  C  C  F  L  H  L  S  V  L  P  H  I  R  H  V  *  I  N  K  I  N  G  Y  N  N  L  R  G  S  C  L  R  S  Y  A  A  F  Y  V  C  W  F  C  H  T  L  D  M  S  R  F  F  F  *  K  K  N  *  W  A  L  Q  *  P  D  E  S  S  *  *  L  L  D  P  L  F  Y  G  L  C  S  S  F  S  V  D  I  *  L  A  L  A  L  D  H  T  L  C  L  F  S  S  Y  M  R  I  *  R  Y  H  P  R  V  *  S  R  L  G  W  W  S  F  Q  N  T  L  V  M  V  P  *  *  D  V  C  V  H  D  Q  S  T  D  Q  V  P  *  L  N  K  N  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="63691" PGL_stop="62723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63691" e_stop="62723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63691" e_stop="62723" e_length="969"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63691" stop="62723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</gDNA_template>
            <first_frame> S  S  S  I  K  E  L  S  K  G  P  D  P  E  K  S  A  Y  E  G  R  K  D  S  C  Q  K  A  V  N  S  D  V  V  G  A  Q  L  F  M  T  A  D  S  *  P  I  A  S  S  Q  G  F  V  Y  M  V  I  *  S  L  I  L  K  H  K  H  K  I  L  T  N  K  N  S  Q  A  *  K  E  K  V  I  F  K  E  E  *  *  S  Y  S  T  K  R  F  D  E  V  L  K  H  L  C  *  V  *  V  L  C  L  S  F  Y  R  F  L  R  L  E  N  S  Q  V  Y  K  Q  R  L  P  W  *  N  I  L  Q  Q  A  Q  Q  G  P  E  E  L  Q  A  S  E  C  V  L  R  V  I  L  S  W  L  Y  Y  K  F  V  P  N  L  *  R  I  Q  I  V  C  F  W  F  V  K  V  *  I  S  *  P  *  L  I  *  W  A  T  L  F  C  C  L  V  K  F  *  V  I  *  V  G  W  F  S  G  Q  C  C  T  C  L  V  K  F  *  I  I  *  S  *  V  V  *  R  A  M  G  S  P  F  S  K  I  *  V  I  *  G  *  *  L  S  G  Q  C  C  I  C  L  G  F  S  S  N  R  V  I  T  W  S  Y  D  Q  *  L  L  L  T  L  V  V  T  G  F  T  F  A  *  E  R  L  E  K  Q  L  K  I  L  C  N  R  S  W  F  Y  S  L  E  Q  G  G  F  H  V  N  C  L  C  R  L  L  F  I  V  Y  S  L  F </first_frame>
            <second_frame>  A  Q  A  S  K  N  S  A  R  D  L  I  P  K  S  L  H  T  K  D  V  K  I  A  V  K  K  L  S  I  L  M  W  *  V  H  N  F  S  *  Q  Q  T  L  S  R  *  L  R  P  K  G  L  C  T  W  *  Y  S  L  L  S  *  N  T  N  T  R  F  *  Q  T  K  T  H  K  L  K  K  K  K  S  S  S  R  K  N  N  N  H  T  Q  Q  K  D  L  M  K  C  *  S  I  F  V  E  F  E  F  C  V  Y  H  F  I  G  F  C  D  L  K  I  L  K  Y  T  S  K  D  Y  L  G  E  I  F  S  S  K  H  N  K  V  P  R  S  C  K  R  Q  S  V  S  *  E  L  Y  F  R  G  Y  I  I  N  L  F  L  I  Y  K  G  F  R  *  F  V  F  G  L  *  K  Y  K  S  V  N  P  N  *  F  S  G  Q  H  C  F  V  A  *  S  N  S  K  S  S  R  W  D  G  L  V  V  S  V  V  P  A  *  S  N  S  K  S  S  R  V  R  W  F  S  E  R  W  G  L  R  L  A  K  S  K  L  S  R  G  N  S  L  V  G  S  V  V  S  A  *  A  F  Q  V  I  E  L  L  H  G  H  M  I  N  N  F  F  S  H  W  L  *  L  G  S  L  L  L  K  K  D  *  R  N  S  *  K  S  C  A  T  G  R  G  F  T  P  L  S  K  E  V  S  T  *  T  A  C  V  V  F  C  S  S  F  T  L  Y   </second_frame>
            <third_frame>   L  K  H  Q  R  T  Q  Q  G  T  *  S  R  K  V  C  I  R  R  T  *  R  *  L  S  K  S  C  Q  F  *  C  G  R  C  T  T  F  H  D  S  R  L  L  A  D  S  F  V  P  R  V  C  V  H  G  D  I  V  S  Y  P  K  T  Q  T  Q  D  F  D  K  Q  K  L  T  S  L  K  R  K  S  H  L  Q  G  R  I  I  I  I  L  N  K  K  I  *  *  S  V  E  A  S  L  L  S  L  S  F  V  S  I  I  L  *  V  F  A  T  *  K  F  S  S  I  Q  A  K  T  T  L  V  K  Y  S  P  A  S  T  T  R  S  R  G  A  A  S  V  R  V  C  L  K  S  Y  T  F  V  V  I  L  *  I  C  S  *  F  I  K  D  S  D  S  L  F  L  V  C  K  S  I  N  Q  L  T  L  T  D  L  V  G  N  I  V  L  L  L  S  Q  I  L  S  H  L  G  G  M  V  *  W  S  V  L  Y  L  L  S  Q  I  L  N  H  L  E  L  G  G  L  A  S  D  G  V  S  V  *  Q  N  L  S  Y  L  G  V  I  A  *  W  A  V  L  Y  L  L  R  L  F  K  *  *  S  Y  Y  M  V  I  *  S  I  T  S  S  H  I  G  C  N  W  V  H  F  C  L  R  K  I  R  E  T  V  E  N  P  V  Q  Q  V  V  V  L  L  P  *  A  R  R  F  P  R  K  L  L  V  S  S  S  V  H  R  L  L  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63596" stop="63402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGRCTTFHDSRLLADSFVPRVCVHGDIVSYPKTQTQDFDKQKLTSLKRKSHLQGRIIIILNKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69615" PGL_stop="71131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69615" e_stop="69799"/>
            <exon e_start="70236" e_stop="71131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69615" e_stop="69799" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="70236" e_stop="71131" e_length="896"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69615" stop="69799"/>
              <exon start="70236" stop="71131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT : GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGA</gDNA_template>
            <first_frame> P  Q  P  I  S  F  S  I  S  F  R  H  F  N  K  H  F  F  A  N  T  H  T  S  I  N  Y  I  C  K  I  V  N  I  M  A  R  A  Q  Q  R  Y  R  G  V  R  Q  R  H  W  G  S  W  V  S  E  I  R  H  P  L  L :   K  T  R  I  W  L  G  T  F  E  T  A  E  D  A  A  R  A  Y  D  E  A  A  R  L  M  C  G  P  R  A  R  T  N  F  P  Y  N  P  N  M  P  Q  T  S  S  S  K  L  L  S  T  T  L  T  A  K  L  H  K  C  Y  M  A  S  L  Q  M  T  K  T  S  P  Q  G  Q  K  L  A  K  N  A  T  N  V  Q  E  S  V  I  N  S  Y  K  M  K  Q  Q  M  L  V  P  K  P  S  V  L  L  T  H  H  D  H  H  E  E  A  K  V  V  N  L  G  V  G  V  I  R  K  V  E  D  Q  V  L  E  G  I  P  Q  F  V  K  P  L  E  D  D  H  I  E  Q  M  I  E  E  L  L  D  Y  G  S  I  E  L  C  S  N  V  V  P  S  H  Q  I  Q  *  A  C  S  *  I  D  Y  C  L  I  L  A  T  F  D  Q  C  R  Y  *  I  T  L  L  L  M  F  S  L  S  N  C  L  F  L  G  P  T  L  F  C  T  R  K  I  L  I  L  L  I  *  P  H  L  Y  S  R  S  R  F  V  W  D  *  S  L  V  I  V  V  L  S  L  L  S  S  L  P  L  F  K  I  Y  V  S  L  V  G  L  G  I  F  S  F  W  F  L  E  F  L  L  *  E  N  L  L  L  V  V  K  F  H  Y  N  I  I  F  S  L  F  *  </first_frame>
            <second_frame>  L  N  Q  F  H  F  L  S  H  S  G  I  S  T  N  T  F  L  R  T  H  T  L  Q  L  T  T  F  V  R  L  S  I  L  W  L  G  H  N  K  D  I  E  E  F  D  R  D  I  G  V  L  G  S  P  K  F  A  I  H  C   : *  R  Q  E  F  G  *  A  L  L  R  Q  Q  K  M  Q  Q  E  H  M  M  K  Q  Q  G  *  C  V  V  Q  E  L  E  L  I  S  H  T  T  Q  T  C  H  K  H  L  P  L  S  Y  S  Q  L  H  *  Q  P  S  Y  T  N  A  T  W  L  H  F  K  *  P  K  P  H  H  K  D  K  N  *  Q  K  M  Q  P  M  F  K  K  V  L  L  I  P  I  K  *  N  N  K  C  W  Y  Q  S  H  Q  Y  Y  *  L  I  M  I  I  M  R  K  L  K  *  S  T  W  E  W  E  *  L  G  K  L  K  I  K  Y  L  R  V  Y  H  N  L  S  S  H  L  K  M  I  T  L  N  K  *  L  K  N  C  W  I  M  D  P  L  S  F  A  L  M  L  F  L  L  T  K  S  S  E  L  A  R  K  S  T  I  A  *  Y  L  L  H  L  I  S  A  G  I  R  *  L  F  Y  *  C  S  L  S  V  I  V  S  F  W  V  L  H  C  S  V  L  E  R  Y  S  F  C  *  F  N  P  I  C  I  A  V  P  D  L  F  G  T  E  A  *  L  L  L  Y  *  V  F  *  V  V  S  L  C  L  K  S  M  Y  R  *  *  V  *  A  F  S  L  F  G  S  *  S  F  Y  S  K  R  T  F  Y  *  L  *  N  S  I  I  I  *  S  F  L  S  F  R </second_frame>
            <third_frame>   S  T  N  F  I  F  Y  L  I  Q  A  F  Q  Q  T  L  F  C  E  H  T  H  F  N  *  L  H  L  *  D  C  Q  Y  Y  G  *  G  T  T  K  I  S  R  S  S  T  E  T  L  G  F  L  G  L  R  N  S  P  S  I  V  :  E  D  K  N  L  V  R  H  F  *  D  S  R  R  C  S  K  S  I  *  *  S  S  K  A  N  V  W  S  K  S  *  N  *  F  P  I  Q  P  K  H  A  T  N  I  F  L  *  A  T  L  N  Y  I  N  S  Q  V  T  Q  M  L  H  G  F  T  S  N  D  Q  N  L  T  T  R  T  K  I  S  K  K  C  N  Q  C  S  R  K  C  Y  *  F  L  *  N  E  T  T  N  V  G  T  K  A  I  S  T  I  D  S  S  *  S  S  *  G  S  *  S  S  Q  L  G  S  G  S  N  *  E  S  *  R  S  S  T  *  G  Y  T  T  I  C  Q  A  T  *  R  *  S  H  *  T  N  D  *  R  I  V  G  L  W  I  H  *  A  L  L  *  C  C  S  F  S  P  N  P  V  S  L  L  V  N  R  L  L  P  N  T  C  Y  I  *  S  V  Q  V  L  D  N  S  S  T  D  V  L  S  Q  *  L  S  L  F  G  S  Y  I  V  L  Y  *  K  D  T  H  F  A  N  L  T  P  F  V  *  P  F  P  I  C  L  G  L  K  L  S  Y  C  C  I  K  S  F  K  *  S  P  S  V  *  N  L  C  I  V  S  R  S  R  H  F  L  F  L  V  P  R  V  F  T  L  R  E  P  S  T  S  C  K  I  P  L  *  Y  N  L  F  S  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69615" stop="69799"/>
                    <exon start="70236" stop="70767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQPISFSISFRHFNKHFFANTHTSINYICKIVNIMARAQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNMPQTSSSKLLSTTLTAKLHKCYMASLQMTKTSPQGQKLAKNATNVQESVINSYKMKQQMLVPKPSVLLTHHDHHEEAKVVNLGVGVIRKVEDQVLEGIPQFVKPLEDDHIEQMIEELLDYGSIELCSNVVPSHQIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="88942" PGL_stop="89460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88942" e_stop="89460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="88942" e_stop="89460" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88942" stop="89460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343095" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</gDNA_template>
            <first_frame> F  E  R  K  V  C  C  C  G  R  F  Q  L  D  E  I  P  C  S  H  A  I  A  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  K  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  P  R  K  R  R  R  K  N  A  D  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  C  R  N  V  S  M  I  *  R  I  I  Y  H  V  N  I  *  M  N  F  S  F  N  Y  D  C  K  L  N  T  L  C  L  D  K  *  T  Y  K  H  V  V  I  T  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  V  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  *  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  C  Q  C  Q  I  R  K  I  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  Q  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  I  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  F  V  V  M  F  L  *  Y  K  E  *  F  I  T  *  T  F  K  *  I  S  V  L  I  T  T  A  N  *  T  L  C  V  *  I  N  K  R  T  N  M  W  *  L  H  L   </second_frame>
            <third_frame>   *  A  E  S  M  L  L  W  *  I  S  T  R  *  D  T  L  F  T  C  N  S  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  A  N  A  R  *  E  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  R  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  L  S  *  C  F  Y  D  I  K  N  N  L  S  R  K  H  L  N  E  F  Q  F  *  L  R  L  Q  I  E  H  F  V  F  R  *  I  N  V  Q  T  C  G  N  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88942" stop="89319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FERKVCCCGRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKKDWSDPKHVVAETVYPPRYRRSSGRPRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="92850" PGL_stop="91944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92850" e_stop="92570"/>
            <exon e_start="92368" e_stop="92246"/>
            <exon e_start="92162" e_stop="91944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.975"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="0.984"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="92850" e_stop="92570" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="92569" i_stop="92369" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="92368" e_stop="92246" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92245" i_stop="92163" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="92162" e_stop="91944" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92850" stop="92570"/>
              <exon start="92368" stop="92246"/>
              <exon start="92162" stop="91944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  V  S  I  I  S  S  T  M  Q  G  M  S  M  W  M  V  L  V  L  L  *  M  R  V  N  Q  *  S  L  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  N  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  Q  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  K  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  K  F  Q  *  R  G  L  L  L  K  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  W  *  A  S  Y  R  R  R  C  R  G  C  R  C  G  W  C  W  C  C  C  K  *  G  *  T  N  S  H  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  T  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  R  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  S  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  G  E  H  H  I  V  D  D  A  G  D  V  D  V  D  G  V  G  V  A  V  N  E  G  E  P  I  V  T  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  P  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  T  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  E  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  E  I  P  I  T  G  I  A  V  K  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92848" stop="92570"/>
                    <exon start="92368" stop="92246"/>
                    <exon start="92162" stop="91944"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSISKENINFQADTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAGDVDVDGVGVAVNEGEPIVTDPKDGDAHQSHQDLNEHIMDQPVDDNVHHNIPHVLPEKTTTDSSDSSTSTTISPSTQAAIEALIKDLGKDATNARPLYSYDPKNITSSQYLLTDSQLPTEIPITGIAVKTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="108517" PGL_stop="104875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108517" e_stop="108410"/>
            <exon e_start="107225" e_stop="107058"/>
            <exon e_start="106451" e_stop="106338"/>
            <exon e_start="105171" e_stop="104875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108517" e_stop="108410" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="108409" i_stop="107226" i_length="1184"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107225" e_stop="107058" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106451" e_stop="106338" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="105171" e_stop="104875" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108517" stop="108410"/>
              <exon start="107225" stop="107058"/>
              <exon start="106451" stop="106338"/>
              <exon start="105171" stop="104875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG : GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG : ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG : GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</gDNA_template>
            <first_frame> L  Q  Q  V  N  S  Q  M  Q  A  W  V  S  S  G  G  S  E  I  F  S  H  T  L  T  R  H  Q  E  I  L  Q  D  L  F  Q  :  E  F  N  R  I  R  S  S  Y  R  A  K  K  E  H  A  S  L  L  E  D  F  R  E  F  D  R  T  R  L  D  L  E  D  G  S  G  S  H  D  Q  A  L  L  N  E  R  A  T  L  H  R  T  T  G  Q  :  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T  F  G  G  I  N  S  K  L  S  N  I  S  S  R  L  P  T  :  V  N  H  I  L  S  A  I  K  K  K  K  S  M  D  T  I  I  L  S  L  V  A  S  V  C  M  F  L  I  L  V  Y  W  M  T  K  *  D  S  N  *  L  D  S  *  W  S  F  E  H  H  L  C  L  F  V  S  F  C  I  F  T  S  E  F  C  D  S  S  F  L  Y  M  *  E  G  I  L  N  W  F  *  C  T  R  L  L  C  Q  S  K  Y  Q  H  D  L  E  S </first_frame>
            <second_frame>  F  N  K  *  I  H  K  C  K  H  G  F  H  R  E  D  L  R  S  S  L  I  H  *  L  A  I  K  K  F  F  K  I  F  F  R :   S  L  T  G  S  V  Q  V  T  E  P  R  K  S  M  L  H  C  L  K  I  L  E  S  S  T  G  P  G  *  I  W  K  M  V  V  G  L  M  T  K  H  S  L  T  N  V  L  L  S  I  G  L  L  D  R :   W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q  H  L  V  A  L  I  Q  N  S  A  I  S  A  V  A  S  Q  R :   L  T  I  F  F  Q  Q  *  R  R  K  S  L  W  I  R  S  F  F  H  *  L  P  L  Y  A  C  F  S  F  W  F  T  G  *  R  N  E  T  V  I  N  W  T  P  D  G  A  L  S  T  I  F  A  C  L  Y  L  F  V  Y  S  P  V  N  F  V  T  L  H  F  Y  T  C  K  K  V  S  *  I  G  F  D  A  R  G  C  Y  A  N  P  S  I  N  M  I  *  N   </second_frame>
            <third_frame>   S  T  S  K  F  T  N  A  S  M  G  F  I  G  R  I  *  D  L  L  S  Y  T  D  S  P  S  R  N  S  S  R  S  F  S   : G  V  *  P  D  P  F  K  L  Q  S  Q  E  R  A  C  F  I  A  *  R  F  *  R  V  R  P  D  Q  V  R  S  G  R  W  *  W  V  S  *  P  S  T  P  *  R  T  C  Y  S  P  *  D  Y  W  T   : D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  I  W  W  H  *  F  K  T  Q  Q  Y  Q  Q  S  P  P  N   : G  *  P  Y  S  F  S  N  K  E  E  K  V  Y  G  Y  D  H  S  F  I  S  C  L  C  M  H  V  S  H  F  G  L  L  D  D  E  M  R  Q  *  L  I  G  L  L  M  E  L  *  A  P  S  L  L  V  C  I  F  L  Y  I  H  Q  *  I  L  *  L  F  I  F  I  H  V  R  R  Y  L  E  L  V  L  M  H  A  V  A  M  P  I  Q  V  S  T  *  F  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108517" stop="108410"/>
                    <exon start="107225" stop="107058"/>
                    <exon start="106451" stop="106338"/>
                    <exon start="105171" stop="105058"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQQVNSQMQAWVSSGGSEIFSHTLTRHQEILQDLFQEFNRIRSSYRAKKEHASLLEDFREFDRTRLDLEDGSGSHDQALLNERATLHRTTGQMDGVISQAQETIKTLMFQRSTFGGINSKLSNISSRLPTVNHILSAIKKKKSMDTIILSLVASVCMFLILVYWMTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106998" e_stop="106348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="106998" e_stop="106348" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106998" stop="106348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCG</gDNA_template>
            <first_frame> R  K  F  H  H  S  Y  D  V  E  S  V  F  S  Y  V  E  V  F  L  K  H  L  E  L  P  K  K  L  T  F  V  S  C  F  S  F  N  A  D  L  L  F  S  S  Y  Y  S  W  G  D  V  L  N  M  R  Y  I  H  L  N  K  V  K  I  *  D  L  V  S  V  I  Y  V  N  L  K  M  N  V  Q  S  L  W  T  *  N  Q  N  N  M  Q  L  Y  T  Y  L  Q  I  I  A  P  K  L  L  R  L  M  F  F  E  *  Q  L  *  R  K  E  K  L  *  E  Y  K  A  L  S  R  W  P  Q  I  F  H  G  H  C  N  F  *  E  Y  L  F  Y  C  S  N  Q  V  L  L  F  L  L  V  L  *  P  C  V  L  L  Y  L  I  A  D  S  *  *  Y  I  R  R  N  Y  *  L  L  D  I  D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  I  W  W  H  *  F  K  T  Q  Q  Y  Q  Q  S </first_frame>
            <second_frame>  E  N  S  T  T  V  M  M  L  N  P  S  F  H  M  W  K  Y  F  S  N  T  W  S  C  L  K  N  L  L  L  F  L  A  S  L  S  M  R  I  Y  C  F  P  H  I  I  A  G  V  M  C  *  T  *  D  I  Y  I  *  I  K  *  K  F  K  T  W  S  A  *  Y  M  L  I  L  K  *  M  C  S  R  Y  G  L  E  T  K  T  I  C  N  Y  I  L  I  F  K  S  L  H  P  N  Y  Y  A  *  C  F  L  S  N  S  C  K  G  R  K  N  Y  K  S  T  K  L  C  L  D  G  H  R  F  S  M  D  I  V  I  F  K  S  T  Y  F  I  V  V  I  R  C  C  S  F  C  *  F  Y  S  R  V  Y  C  C  I  *  L  P  T  L  D  N  I  S  E  E  I  T  D  F  L  I  *  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T  F  G  G  I  N  S  K  L  S  N  I  S  S   </second_frame>
            <third_frame>   K  I  P  P  Q  L  *  C  *  I  R  L  F  I  C  G  S  I  S  Q  T  L  G  A  A  *  K  T  Y  F  C  F  L  L  L  F  Q  C  G  S  I  V  F  L  I  L  *  L  G  *  C  A  K  H  E  I  Y  T  F  K  *  S  K  N  L  R  L  G  Q  R  N  I  C  *  S  *  N  E  C  A  V  V  M  D  L  K  P  K  Q  Y  A  T  I  Y  L  S  S  N  H  C  T  Q  T  I  T  L  N  V  F  *  V  T  A  V  K  E  G  K  T  I  R  V  Q  S  S  V  *  M  A  T  D  F  P  W  T  L  *  F  L  R  V  L  I  L  L  *  *  S  G  A  A  L  S  V  S  F  I  A  V  C  I  V  V  F  N  C  R  L  L  I  I  Y  Q  K  K  L  L  T  S  *  Y  R  W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q  H  L  V  A  L  I  Q  N  S  A  I  S  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106998" stop="106801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFHHSYDVESVFSYVEVFLKHLELPKKLTFVSCFSFNADLLFSSYYSWGDVLNMRYIHLNKVKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="116116" PGL_stop="112713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116116" e_stop="115846"/>
            <exon e_start="115057" e_stop="114925"/>
            <exon e_start="114840" e_stop="114767"/>
            <exon e_start="112938" e_stop="112908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.675" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="116116" e_stop="115846" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115057" e_stop="114925" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.675" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114840" e_stop="114767" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112938" e_stop="112908" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116116" stop="115846"/>
              <exon start="115057" stop="114925"/>
              <exon start="114840" stop="114767"/>
              <exon start="112938" stop="112908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT : GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT : CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG : TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</gDNA_template>
            <first_frame> T  S  F  C  S  R  S  L  S  S  T  K  W  S  E  Y  S  *  C  W  D  F  W  K  S  G  E  G  C  *  *  D  *  P  *  S  L  T  W  Y  K  R  S  F  K  Q  N  P  T  S  S  R  F  V  F  V  I  S  F  *  R  D  A  E  K  T  S  *  I  Y  K  E  K  G  D  A  S  *  E  C  N  *  C  *  V  S  E  R  R  C   : W  L  R  K  T  S  *  T  A  R  E  R  D  G  A  *  H  Q  D  C  R  R  T  K  S  K  C  *  G  S  W  H  *  N  G  *  *  F  P  K  T  Y  C  N  F :   S  T  G  N  L  *  N  C  L  *  W  *  S  G  S  F  E  C  C  S  A  L  Q  *   : V  A  S  Q  P  A  S  L  A  L   </first_frame>
            <second_frame>  Q  V  S  A  P  G  V  Y  Q  A  P  N  G  L  N  T  A  N  A  G  T  S  G  N  Q  V  K  A  A  D  E  T  N  H  E  V  S  H  G  T  S  D  P  S  N  R  T  Q  L  H  Q  D  S  S  L  L  Y  H  F  R  E  M  Q  R  R  Q  V  E  F  I  R  K  R  V  M  L  L  E  N  A  I  N  A  E  Y  Q  R  D  V  V  :  G  C  G  K  P  H  E  L  P  G  K  E  M  E  R  D  T  K  I  V  D  E  L  S  R  S  V  E  A  A  G  T  E  M  V  D  N  F  P  K  L  I  A  I   : S  P  Q  G  I  S  E  I  A  C  D  G  E  V  D  R  L  S  V  A  Q  L  Y  N  K  :  *  Q  V  S  Q  L  V  W  R  *  </second_frame>
            <third_frame>   K  F  L  L  Q  E  S  I  K  H  Q  M  V  *  I  Q  L  M  L  G  L  L  E  I  R  *  R  L  L  M  R  L  T  M  K  S  H  M  V  Q  A  I  L  Q  T  E  P  N  F  I  K  I  R  L  C  Y  I  I  L  E  R  C  R  E  D  K  L  N  L  *  G  K  G  *  C  F  L  R  M  Q  L  M  L  S  I  R  E  T  L  L :   V  A  E  N  L  M  N  C  Q  G  K  R  W  S  V  T  P  R  L  *  T  N  *  V  E  V  L  R  Q  L  A  L  K  W  L  I  I  S  Q  N  L  L  Q  F  :  L  H  R  E  S  L  K  L  L  V  M  V  K  W  I  V  *  V  L  L  S  S  T  I  S :   S  K  S  A  S  *  S  G  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116115" stop="115846"/>
                    <exon start="115057" stop="114925"/>
                    <exon start="114840" stop="114767"/>
                    <exon start="112938" stop="112936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVSAPGVYQAPNGLNTANAGTSGNQVKAADETNHEVSHGTSDPSNRTQLHQDSSLLYHFREMQRRQVEFIRKRVMLLENAINAEYQRDVVGCGKPHELPGKEMERDTKIVDELSRSVEAAGTEMVDNFPKLIAISPQGISEIACDGEVDRLSVAQLYNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113332" e_stop="112713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113332" e_stop="112713" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113332" stop="112713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTT</gDNA_template>
            <first_frame> K  *  K  F  K  V  E  N  I  F  K  K  H  N  *  F  F  G  E  G  V  G  L  K  D  R  K  I  P  W  Q  *  I  F  E  V  S  A  H  I  K  S  N  L  S  C  I  T  E  T  L  G  R  S  M  S  L  L  A  F  L  F  A  Y  G  T  K  *  S  I  H  V  E  L  *  G  A  A  T  T  T  H  I  F  N  Q  S  Y  L  P  E  Y  E  I  K  H  I  F  T  G  R  V  V  K  *  V  F  C  A  L  L  F  L  V  L  Q  M  C  K  V  L  S  D  S  G  E  D  S  F  N  A  V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G  K  H  D  N   </first_frame>
            <second_frame>  N  K  N  L  K  L  K  I  F  L  K  S  I  I  N  F  L  G  R  G  W  G  *  K  T  E  K  F  H  G  S  R  Y  L  K  Y  Q  H  I  *  N  L  I  Y  H  A  *  Q  K  H  *  A  E  A  C  P  Y  L  H  F  F  L  H  M  G  Q  N  S  R  Y  M  *  N  C  K  V  Q  L  Q  Q  L  I  S  L  I  N  H  I  C  R  N  T  R  *  N  I  F  S  Q  E  G  L  *  S  R  C  F  V  L  Y  F  F  W  F  C  R  C  A  R  Y  F  L  T  L  V  K  I  H  L  M  Q  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R  E  N  M  T  I  </second_frame>
            <third_frame>   I  K  I  *  S  *  K  Y  F  *  K  A  *  L  I  F  W  G  G  G  G  A  E  R  Q  K  N  S  M  A  V  D  I  *  S  I  S  T  Y  K  I  *  S  I  M  H  N  R  N  I  R  P  K  H  V  P  T  C  I  S  F  C  I  W  D  K  I  V  D  T  C  R  T  V  R  C  S  Y  N  N  S  Y  L  *  S  I  I  F  A  G  I  R  D  K  T  Y  F  H  R  K  G  C  E  V  G  V  L  C  F  T  F  F  G  F  A  D  V  Q  G  T  F  *  L  W  *  R  F  I  *  C  S  S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  K  T  *  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113017" stop="112715"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFCALLFLVLQMCKVLSDSGEDSFNAVASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEGKHDN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="158239" PGL_stop="157526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158239" e_stop="157526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="158239" e_stop="157526" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158239" stop="157526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</gDNA_template>
            <first_frame> H  *  S  P  W  I  L  S  M  I  C  N  *  I  K  M  L  Q  *  E  *  Y  G  L  *  V  *  *  N  L  R  I  V  F  G  L  F  I  S  H  K  I  M  V  V  A  M  G  T  *  H  *  M  S  R  N  I  L  M  I  A  W  G  R  W  M  Q  K  I  N  K  I  K  T  L  S  L  Q  I  K  K  D  H  L  L  F  Q  Q  V  Q  L  C  S  T  Q  I  L  Q  T  L  L  K  F  S  T  L  T  R  K  R  H  P  F  S  G  *  R  G  V  F  K  *  S  F  Q  F  R  L  G  M  M  L  P  S  I  *  P  Q  I  H  L  V  E  M  L  H  *  G  I  C  Q  R  P  S  T  L  G  D  L  K  H  K  E  F  K  P  L  P  Q  N  *  F  G  L  L  T  G  T  R  Q  I  *  F  T  I  S  L  Y  M  L  R  K  W  G  G  K  F  K  W  L  M  Q  A  Y  L  I  C  I  T  A  A  *  F  W  M  I  S  R  L  L  S  F  G  R  W  L  K  I  Q  S  P  L  Q  L  E  G  R  K </first_frame>
            <second_frame>  I  E  V  H  G  Y  *  V  *  F  A  I  E  S  K  C  Y  N  E  S  D  M  G  F  R  F  D  K  T  S  G  *  S  S  A  F  L  S  P  T  K  S  W  W  *  L  W  A  L  D  T  E  C  L  G  T  Y  *  *  L  L  G  A  A  G  C  R  R  *  T  R  S  R  P  C  H  C  R  *  K  R  T  T  C  C  F  N  R  S  S  C  V  L  P  K  S  S  K  P  F  *  S  S  L  H  *  Q  E  R  G  T  P  S  Q  G  R  E  G  C  S  S  K  V  F  N  S  G  W  A  *  C  C  L  L  Y  N  L  R  S  T  W  W  K  C  Y  I  E  E  Y  V  R  D  H  L  L  W  G  T  *  S  T  R  S  S  S  H  S  H  R  I  S  L  G  S  *  P  E  H  A  R  F  S  L  L  S  V  S  I  C  S  E  N  G  V  E  S  S  S  G  *  C  R  L  T  *  Y  V  *  Q  Q  R  S  S  G  *  S  A  G  Y  F  L  L  D  V  G  *  K  F  N  L  H  C  S  S  R  G  E   </second_frame>
            <third_frame>   L  K  S  M  D  T  K  Y  D  L  Q  L  N  Q  N  A  T  M  R  V  I  W  A  L  G  L  I  K  P  P  D  S  L  R  P  F  Y  L  P  Q  N  H  G  G  S  Y  G  H  L  T  L  N  V  S  E  H  I  D  D  C  L  G  P  L  D  A  E  D  K  Q  D  Q  D  L  V  I  A  D  K  K  G  P  L  V  V  S  T  G  P  A  V  F  Y  P  N  P  P  N  P  S  K  V  L  Y  I  N  K  K  E  A  P  L  L  R  V  E  R  G  V  Q  V  K  F  S  I  Q  A  G  H  D  V  A  F  Y  I  T  S  D  P  L  G  G  N  A  T  L  R  N  M  S  E  T  I  Y  F  G  G  P  E  A  Q  G  V  Q  A  T  P  T  E  L  V  W  A  P  D  R  N  T  P  D  L  V  Y  Y  Q  S  L  Y  A  Q  K  M  G  W  K  V  Q  V  V  D  A  G  L  P  D  M  Y  N  S  S  V  V  L  D  D  Q  Q  V  T  F  F  W  T  L  A  E  N  S  I  S  I  A  A  R  G  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="158237" stop="157527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKSMDTKYDLQLNQNATMRVIWALGLIKPPDSLRPFYLPQNHGGSYGHLTLNVSEHIDDCLGPLDAEDKQDQDLVIADKKGPLVVSTGPAVFYPNPPNPSKVLYINKKEAPLLRVERGVQVKFSIQAGHDVAFYITSDPLGGNATLRNMSETIYFGGPEAQGVQATPTELVWAPDRNTPDLVYYQSLYAQKMGWKVQVVDAGLPDMYNSSVVLDDQQVTFFWTLAENSISIAARGEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="169303" PGL_stop="173400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="169303" e_stop="169583"/>
            <exon e_start="172942" e_stop="173145"/>
            <exon e_start="173219" e_stop="173400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="0.995"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="169303" e_stop="169583" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.863">
            <gDNA_intron_boundary i_start="169584" i_stop="172941" i_length="3358"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="172942" e_stop="173145" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="173146" i_stop="173218" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="173219" e_stop="173400" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="169303" stop="169583"/>
              <exon start="172942" stop="173145"/>
              <exon start="173219" stop="173400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC : CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG : GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAG</gDNA_template>
            <first_frame> K  S  S  L  V  L  L  G  F  H  K  I  S  F  A  S  A  K  H  E  R  I  A  I  S  R  V  T  I  C  V  C  S  G  V  *  W  S  E  E  *  F  E  G  I  N  L  D  F  F  W  K  I  L  K  R  E  R  K  R  W  R  L  L  T  K  S  L  K  S  R  L  L  L  L  G  T  S  *  L  S  L  L  L  H  L  K  N  S  S  V  C  L  T :   K  *  S  L  P  C  L  K  W  S  S  H  Q  R  N  Q  C  M  M  H  F  L  H  *  *  R  H  W  L  Q  M  I  S  *  G  I  L  M  L  M  *  R  S  Q  L  L  R  V  L  V  R  *  L  E  L  L  H  Q  T  L  H  M  M  T  T  K  *  R :   I  S  F  N  *  L  C  R  L  L  R  I  W  M  T  S  L  A  D  L  I  I  R  G  *  *  S  L  R  Q  W  P  R  S  G  H  V  L  S  C  W  I  *  N  V  M  G  S  S  L  R  C  F  S  T  S  L  K  L  *  </first_frame>
            <second_frame>  K  A  H  L  F  F  *  G  F  T  R  S  L  L  P  L  Q  N  T  S  E  L  R  F  L  G  L  R  F  V  F  V  R  V  F  D  G  P  R  S  D  L  R  V  *  I  L  I  F  S  G  R  F  *  R  E  K  G  N  D  G  A  F  *  Q  R  A  *  R  A  D  C  C  C  W  E  Q  A  D  *  A  S  F  F  T  *  R  T  P  P  F  A  *   : P  S  R  V  F  P  V  *  S  G  A  V  T  S  E  I  N  A  *  C  T  F  S  I  D  E  G  I  G  C  K  *  S  L  E  A  F  *  C  *  C  E  G  R  S  C  F  V  Y  *  *  D  N  *  N  Y  C  T  R  R  S  I  *  *  R  Q  N  E   : G  Y  L  S  I  N  C  V  V  F  *  E  S  G  *  P  V  *  Q  I  L  *  *  E  G  D  D  P  *  D  S  G  Q  G  Q  V  M  C  C  H  A  G  S  R  M  *  W  A  H  R  *  D  V  S  A  L  P  *  S  Y  K </second_frame>
            <third_frame>   K  L  T  C  S  S  R  V  S  Q  D  L  F  C  L  C  K  T  R  A  N  C  D  F  *  G  Y  D  L  C  L  F  G  C  L  M  V  R  G  V  I  *  G  Y  K  S  *  F  F  L  E  D  F  E  E  R  K  E  T  M  A  P  F  D  K  E  L  E  E  Q  I  A  V  A  G  N  K  L  I  E  P  P  S  S  L  E  E  L  L  R  L  L  D  :  Q  V  E  S  S  L  S  K  V  E  Q  S  P  A  K  S  M  H  D  A  L  S  P  L  M  K  A  L  V  A  N  D  L  L  R  H  S  D  V  D  V  K  V  A  V  A  S  C  I  S  E  I  T  R  I  T  A  P  D  A  P  Y  D  D  D  K  M  K  :  D  I  F  Q  L  I  V  S  S  F  E  N  L  D  D  Q  S  S  R  S  Y  N  K  R  V  M  I  L  E  T  V  A  K  V  R  S  C  V  V  M  L  D  L  E  C  D  G  L  I  A  E  M  F  Q  H  F  L  K  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0030C09.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="169446" stop="169583"/>
                    <exon start="172942" stop="173145"/>
                    <exon start="173219" stop="173398"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLEDFEERKETMAPFDKELEEQIAVAGNKLIEPPSSLEELLRLLDQVESSLSKVEQSPAKSMHDALSPLMKALVANDLLRHSDVDVKVAVASCISEITRITAPDAPYDDDKMKDIFQLIVSSFENLDDQSSRSYNKRVMILETVAKVRSCVVMLDLECDGLIAEMFQHFLKAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 47976 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2085 bytes was the average size of a spliced alignment
$ 25528 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1501 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-06 21:56:59
-->
