<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 04:47:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321698" ref_strand="+" ref_description="SGN-U321698        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycine-rich protein, similar to several proteins containing a tandem repeat region such as Plasmodium falciparum GGM tandem repeat protein (GB:U27807) | chr4:1073774-1075878 REVERSE | Aliases: T14P8.5, T14P8_5(evalue: 2e-21, score=99.8) genbank/nr: gi|12231292|gb|AAG49030.1| ripening regulated protein DDTFR8 [Lycopersicon esculentum](evalue: 1e-65, score=253)">
      <seq>ttttcccgtctgtgtattataaaataatgagccgacatcctactatcaagtgggctcagaggtctgacaagttgtttattacggtggagttaccagatgccaagaatgtgaagctgaaactggaaccagaaggaaaattcttattctctgcaactgcaggagctgataatgtaccttatgaagtggatcttgatctgtttgataaaattaatgttgatgagagcaaaagtagtactacctctagaagtatcgtgtatctagtgaagaaggcggaagacaagtggtggagcagactggtaaagcaggagggattacgtccggtgtttttgaaagttgattgggacaaatgggttgatgaagatgaagaagacagtaaacctgagccagatatggattttggtgacatggacttctcgaaactcaatatgggagaaggtcctagcaattttgatgttgatgtgcctgagggcgatgatgacagtgacactgaagaaattgaggaagaagagaactctgaacccaaggcagcagtgcctccaagcaccgaacccggagtgaaagcttgacgcattccagtgtttgtaacattgaaaactttttaactgcttgcttgagtttgagtgtggtacattcttctagcaatggttagagctgtagtgcaggaaatgtttgatgatcagttcatgatatatttgaaggatctgaaagggctggtgtcctcattgaactttgttatcatgtactgcacattacatatgatttctcaaacatatataaaaactatgtaatactggctagtgcagtgcaacgttcagtttgcacaataacatgtggaaatccatgttatccttataagattgatgttgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="7267" stop="4202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6967" g_stop="6937" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6936" i_stop="5729" i_length="1208">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5728" g_stop="5542" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="218" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5450" g_stop="5291" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="378" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80">
            <donor d_prob="0.056" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5210" g_stop="5173" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="416" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5077" g_stop="5026" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="468" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4904" g_stop="4498" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="875" r_length="407" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U321698" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6967" e_stop="6937"/>
          <exon e_start="5728" e_stop="5542"/>
          <exon e_start="5450" e_stop="5291"/>
          <exon e_start="5210" e_stop="5173"/>
          <exon e_start="5077" e_stop="5026"/>
          <exon e_start="4904" e_stop="4498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCGTCTGTGTATTATAAAATAATGAGGTATGTTCTTCAATCTTCTGTTGGCGGAATAATCTATGCTTATTTTCTTCTTTATAGCTTGTGTATATTTTATCTATTGCGTTATGAGTAGAAAACTTGTAGTTGTTACTGTTTGTGAAGTTCTTGATTTTATTGTTGAAATGTTTGAATTGAACCCTAGGATTTTAGAGTTTTGAACCTCGCGTAAACAGAAAATTATACATGATTTTAGTTAATTTATTTTTTACGCATATAATGTGGATGTTGAATCCTTATGGATTCTTCATCAGTGGTGTATTAAGAATAAGATTTGAACTTGGTAACTCGAGGTGAATTTTATATAAAAATGTGAACTCCGTTGGTACCTTCTAGATCCGTCCATGCTCTTCAATCTTCATATTTTAGAACGTTCTAGAACCCGTTAGTGTGCTCGTCCCTTGAGCCCGGGGCGGAGCCAGGTAGGGCCCAGGGGTTTAGTGTTTGAAGTTTTAGTAGTATTTAGTGTGCCAGCCCCTTGATCTAGGGACTGAGCTAGGTAGGGCCAAGAGGGTTCATCTGAAACCAAAACAAAATCATTGATGGAAAATTATATGGGTTGTACATGGTTAAGCTTTTCTTCATATGTTGAACTTTTTTGAACTTTTCATGTGTTTACTTTTTTATATTTTGAAACTCCATCTTAGCGTGTTGTAATTGGTTTGATGTGGTTCTTGATTCAGAACAAATAAATTTTTTCTTCTGTATTTAACTATATAGCAATTGGGACCGGCTGGAACGGGTCATCTTTCAATTACTTGCGTCATGAATATTGTGGGATAATTTACCACAGACAATTATGTGAAAGGACATTGTTAACATATGATGAATTACACTGAAGAAAATAATGATACTTTGTTTGCTCATCTCCTCAAAATTTCTTGATTTGAAATACATTTTGTGATTTCTTGGACTGGCTGTGCCTTTTTGGCTGTGTTGCTCCGACTCTTTAAAAATATTAATGGGTCGGATTCTCCAAAAGTAGTGTATTTTTGGAGAATTCGACACAAGTGTAGAGTAGTTTTGGAGGCCGACACAAGCGTAGGATTGAAAGTGTAGAGTCGGCGCAACTTAGGATTCTGGAGTGTCTATCCACATCCTGCTAATTGTCTCTTCCTCGTTTTGCCTTGAATAGTGGTTGTGATTTTTATGATTTAATTGGTATCAATTTGTTTTCTGCTTCTCTATCTCAGCCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGATGTAAGTGAATTTCCATCAGTTTGCATCATCTGCAAATTTTTGTGCGAGATAGAAGAACCCATGTTAATTTTACTGTAAAATGATCATTCAGGAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAACGTAAGTATGAAGTCACTAGGGATATCTTCACTGTTGATATTAGCCACTTGGTATATTTGCTAACTATGAACTAATTTCAGCTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCGGTAAGCAGCTCTAAAGATATTAATAAGCGATAGTGTTAATTCGAGTCTATATTGATGCTGATATCTTAACATTCTCCCTTGTATTATTCTCTCAGAAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGGGTAAGTCTGATTTGGTTCTGAGCAATTACTGATATTCTTAGCTTCAAATCGATTGCTTGGATTGGAAATTTGTTATTTCCATCCTCATCTAATATATAAATTGACAATGTTTGTGCAATAGGCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATGATATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATGTTGTATAATCGT</genome_strand>
        <mrna_strand>TTTTCCCGTCTGTGTATTATAAAATAATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGAT...........................................................................................GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAAC................................................................................CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCG...............................................................................................AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGG.........................................................................................................................GCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATGATATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATGTTGTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346348" ref_strand="+" ref_description="SGN-U346348        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S2 (RPS2B), similar to ribosomal protein S2 GI:430711 from (Drosophila melanogaster) | chr1:21846053-21847398 REVERSE | Aliases: T4M14.3, T4M14_3(evalue: 1e-57, score=220) genbank/nr: gi|21539457|gb|AAM53281.1| ribosomal protein S2, putative [Arabidopsis thaliana](evalue: 2e-56, score=222)">
      <seq>gttccgaaaccccacactncatgcccatgtgattcgagtgtgggtttgctgcagatgtcctgttgcgtacaactttactggatgcgtactcgaaatgtagtgatttggattatgcatacaaggtgtttgatgaaatgggtgttagagatattgcgatttggaatgcgttaattgctgggttagctcaagggaatcgacccactgaggctttgttgcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="9760" stop="10581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10060" g_stop="10281" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-U346348" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10060" e_stop="10281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCGAAACCCCACAACTTCATACCCATGTGATTCGA-TTTGGGTTTGATGCAGATGTGTTGTTGCGGACTACTTTACTGGATGCGTACTCGAAATCTGGTGATTTGGATTATGCATACAAGGTGTTTGATGAAATGGGTGTTAGAGATATTGCGAGTTGGAATGCATTAATTGCTGGGTTAGCTCAAGGGAATCGACCCACGGAAGCTTTGTTGCTTTTTA</genome_strand>
        <mrna_strand>GTTCCGAAACCCCAC-ACTNCATGCCCATGTGATTCGAGTGTGGGTTTGCTGCAGATGTCCTGTTGCGTACAACTTTACTGGATGCGTACTCGAAATGTAGTGATTTGGATTATGCATACAAGGTGTTTGATGAAATGGGTGTTAGAGATATTGCGATTTGGAATGCGTTAATTGCTGGGTTAGCTCAAGGGAATCGACCCACTGAGGCTTTGTTGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340900" ref_strand="-" ref_description="SGN-U340900        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G69640.1 | Symbol: None | acid phosphatase, putative, similar to GI:5360721 from (Lupinus albus) | chr1:26197322-26199319 REVERSE | Aliases: F24J1.22 (evalue: 1e-32, score=137) genbank/nr: gi|34913184|ref|NP_917939.1| similar to acid phosphatase [Oryza sativa (japonica cultivar-group)] gi|24414098|dbj|BAC22345.1| putative Sur2p: syringomycin response protein [Oryza sativa (japonica cultivar-group)](evalue: 5e-36, score=154)">
      <seq>gtcaaaaacagttgatgatcattgtgacttttggctgcctggtaatatcttccatttgttttccaaaataacactgcttaccatgacattcaccatcagcttcaaggcacaaagttcaattattctcagccattcttttccatttgggacaaacttcttggaacatacaggccatacagacttgtaaaaaggcctgagggtggtttcgaggcacaactgatgaaagattagttggttttgttcattagtctctgtatgaaatcaacatgtcttttgtagggatagctaccaagttgaggttgttcactctagcagttgccttggaaggtccacattcatcaagacttgaaagtgtgctgcagaattagaaatgttcattcttttcttttcagttgaccctgtttattcgtaatttttgtctaacctcttgacgatttgtaagcctattgtttctgagttcttactttgtgcagtatacattttcaactattgcaacttgctcagactttagcaggttgattttgtattgcctttcaagagttgtgagtctcgagaaatcaagatcatgtaattacaattgttcaaactatgtagtgtaaaatttcatggtcattgaagttatttcaatcacctttgtgctattttatttgaagcttttgtgatacactttataaagacttgtgaagttttatcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="12982" stop="11679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12682" g_stop="12018" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="708"/>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U340900" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340900" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12682" e_stop="12018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTC-AAAACAGTTGATGATCATTGTGGACTTTGGCTGCCTGGTAATATCTTCCATTTGTTTTTCCATAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTCAATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATACAGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAGTTGGTTTTGATCATTAGTCTCTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGAGGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGCTGCAGAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATACATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCGAGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCAATCACCCTTGTGCTATTTTGTTTGAAGCCTTTGTGATAC</genome_strand>
        <mrna_strand>GTCAAAAACAGTTGATGATCATTGTGACTTTTGGCTGCCTGGTAATATCTTCCATTTG-TTTTCCAAAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTCAATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATACAGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAGTTGGTTTTGTTCATTAGTCTCTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGAGGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGCTGCAGAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATACATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCTCGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCAATCACCTTTGTGCTATTTTATTTGAAGCTTTTGTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329370" ref_strand="+" ref_description="SGN-U329370        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G69640.1 | Symbol: None | acid phosphatase, putative, similar to GI:5360721 from (Lupinus albus) | chr1:26197322-26199319 REVERSE | Aliases: F24J1.22 (evalue: 1e-26, score=117) genbank/nr: gi|47825000|gb|AAT38772.1| putative acid phosphatase [Solanum demissum] (evalue: 1e-26, score=122)">
      <seq>catccctttcccttttccaacgaatctctcagaatcataaattcaaaaaaaaaagttaggccgaatctcacaactgtcagcactatcattgtattaaccccagctcaactctcatgttaatacatacatttacatacatatgccccagatctgttctcatatttccaataattgtttctctaagatttgccaaaatcaccaccagtaatttctatgctttgttggggctaaagatttgatcttttgttcaagaacttatttgggatttcattttcttggattcttgtttcagggtgtatgttgtaatgtgcttgttgtatgtagatcttgagctgggaatttcataatttagagtgttggattgagggaaaagggataaggggaaaggggttaactttttttttttgaaaagggggcttaaaaatggtgttctgggagggttatgtgagtgatgaagtgatggggacatttgccccaatagtggtgtattggttgtatgcagggttctatcagctattgcctcccatggataaatatcgtcttcatacaaggaaagaggaaaatgccaagaacttagttccactggcttctgttgttaaaggggttcttcttcagcagttttttcaggcaactgttgcccacttgctctttttgttaacttgtaaggtaactacatcagaaactgtagtccagccctcaattcctgttcagattgtgcagatcattattgcgatgctggtcatggacacatggcagtactttgtgcatcgctacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="19518" stop="12570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19218" g_stop="18562" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18561" i_stop="12995" i_length="5567">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12994" g_stop="12870" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="779" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U329370" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19218" e_stop="18562"/>
          <exon e_start="12994" e_stop="12870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCTTTTCCTTTTCCAACGAATCTCTCAGAATCACAAATTCAAAAAAAAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCA------ATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAA-GGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTGGTAATTCCTCAGCTATTTTTGGTTCTGGTTCCATAAACTGTGTCTGTCTGTCTTGGTTGGAGTTCTTTGGATTGATTAGTTAACTGTGTGACTGGGTGGATAAGGCCTGTAGAAATGGATAAGTAGAGTTGCTCCTTTGATGGCATGTAGGTCACACGTTTGAGGCATCGATACAAACCTTTAGTAGAAATGCAAAGAGAGGGCTGTGTACGACATACACCTTCCTCCTACGAACACTAGTTGGGAGCACTTAATGCATTGGCTAAACTGATTTATAACAAAGTGGTCAGATTATATTGCTGTCAGACTTCCAATTATGACCAGCTTGTTGTTTGCAGTTACTTACTTAAGAGGGTAATGAACTATTGCATGACTTCTCATGTAGTGTGCTCTAATTAGTGCACTGGTTATTTGATTTTGATTCAATACTCTTCTATTTAATGTGCCAATCAGCCTTAGCTTATGCAGTGATTACTTTTATCGACAACATTGACCAGCGACAAACGTTCTCCCCTCTCCCCTTCATATATAATATATAGCGTTGAAATGCTAATCACATCTCTGTGTTTGGCGTTGTCCTTCATCGAATATTGTTCCTCATGAAGTTGATAGAAAAGGAGTCAGAGCGGCAGAAAGGAAGTACAGAAAAATTCATCTATAGCTTAGTAACCATTATGTCATATACTCGTGAGAGAATGAAGCACTTAAGATGATGAAAGTATTTTCTGAACAAGTTAATGAATGCAGGAATGGTGCCTTTCAACCTTTTTCTTTAGAAGCATTCATAAGTTCGTTCTATACAGACGGTCCAATAGCGGACATCCTCAAATGTGCTCCCCCCTCCAATACACATAACAGTATAAGTCTTTGATCGTTCAATGGATTGACTACATTGCCATATTTTATTTTGTCCTTTTAAGAACATTTTCTTCATGAAATTGATAGAAGTGGACAGAGAGAGGGAAGAAGTCTAGAATATAATATCTGAAGCATGGCAAAATTGATCATCATGTTATATTCTCCCAGGTAAATGTAGTATCTTTTTAACAAGTAGATGAACGAAGGGTTGGACAAGTTTCAATTTTTTGTGTGTTGCAAGAAGCATAAGAAGGTTAATAAAAAATGTTAAATTAGATTATATGCATTTTGTAGATGCCGTTGAATCAATTTGTGTATTTGACCTAACCTATAAGCACGAGGAAGTGAAATGAAGATCTAAGCAGCTTTTCTAGTCTTACTGAAAAGCATGCTTCATATGTTCCCCATTTTCACTTCAAGTACGCCAATTTAGGGACACATCAGAAATGAAAGAGCTTCAAGGAGACACCAAATGGTGACTTCTCATCTCGCATCACATATTGGAATTTTGAAGGAAACTATCTGAAAGATCAGTTTCTCCCATTATGGTCAAAGTAGGAAATATGCTATTTGGATAACTAGCATTCTACCCTTCGGGGTGACCCAGTGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCCATATCGAAACCCCTTGCAAGCGAAAGCAAGGGGTTTTCCTTCTGGGTCGCGCTCGTCGTACCGGGCTTGCCAGTGCAGGTTAACTCTCCTACGTGGTTTGCAAGCTCTTGCATAGGAGCGGGGGTTTCTCCTTGTGCGCACTCTAAGGGTAGTGGATGTTGGTTCCCCTAGTTATTTAAAAAAAAAAACTACCATTCTGTTGTATCTTCCAAATCAGGGTGTTGTATTAGTGGCCATGCCAGATTTACTTGTACAACCTGGACCTTGCATGTTGCTTCTTTTTTCTTTTATACATTGCTATGTTTGTTGAACTTGAACTTCTAGAATAAACTTGCAGAATTTGTAATTTCAAAAGGCTTTGGGGACACTTCCTATGATGTAGATAGTTCAAGTCTTGCTATATTTTAGTCACCATTGAGCTGATCAACCTAAAAATAAACGTGGTACCAATACTGTTTCCCGGACGACTATTATAACTACATGCTTATCCAATGGGTAGCTACTCACCTGGATTTCCTCGACGTAACCATTGGATAACACCAATATAATTTAGCCATGTGGACGAACTCTTCCATACCCTCTCCCTCTGTTAGGCCACAACTTTCATATTGGTCTTATAGCATCTGCAGACCTATGGTACTGAAGAGAACACATGTTTCGGAAGTTTTTTGCTCCAAAAAAGTGATATCTTATCTATGGTGAAATTGCTGTTTGCTCTTGTAATTGTGTTGGGATAATGAATGAAGAACCTGTGACCACTTCTTCCCACAGACATGTATCAGTGTGAGCGCTAGTCTATACCAGCGGATTCTATCCATAGGTCATATATATGCTAAGCAACATAGACCCATAAATGAGCCAAAGGAAGAATGAACTTTAGAGTCATCCTGATGGGTTTATCAACTAACTAAAATTACCCGAGTCTCTGGTTTAGCGGTCAATGAAGTGGGTGAAAATCACGAGAGACCAGGGTTCAAAATCCTAACTCAGGCAAAAAAACTCTAGATGGTTTCTTTTCATTTGTCTAAGCCTGTTGGACACAATTACTAGGTGCCTTTGTTGGTGAGAGGCGGTTGATACCTGGTGAAATAGTCAAATGGTGCAAGCTGGCTCGAGCACCACAATTATCATTTAGTAAATCTAGTAAAAATTATTTTCTCCCCCTTCAAAGATGGCTTGCACATTTATGGGACTGTCTTTAATATGTATTTTTTCCTTTTTGTTTCTTCAGCTTTAGAATTCCCCATGCTTACAGTTTGCTTGAGTATTTCTTGAATTTGGATAATATACCTTGAACACATTTCGGAACAGATCAAACAATATGTGTGGTCATCTCTCTTCTTTATATTATACATCCAGAAACCTACAAATCCTCCTGCCTTCTTTTTATCCGAATTAATCGTTTTAATATGTTTATCGAATTTTTTTGCTCTGGGGTTCCATTAGCTGCTAGGGTCACATGATAAAGGTGATCTTTTGCCTTCTAGTGAAGTTTTGCAGCTGTCAAATCTCTTCACCCACGACCTATCAGTAAAAATGTATTAACCTAAACTTTTTATGGTTGAGACACGTGGAATGATCTATGCCTCCAATGTAGGGTTTTGGGTTGTTAATGCAACATGAAATTTTTTCTGGTACAGTTGTATTTGTTCTGACCTACAGATAGTTTCGAAGATGCCATCTATATTACTTGGGTCTCTATGAGCAATTATCATGGATAGATCAAGAGGGAATTCTGTTGCAAATGGTTAATGATCTAACTGGAACTAATAAACGGAGTAGGTCTTGACATTCATACTTACATATTGGAGTTTAGAGATTTCTACAAATGCTTATTTTGCTCATCGACTGTCAGGGAAACAAATTTTTGTCTCATAATCTGATATTGCGAGTTTGATGAGTTGTGTTCGCTTCTCTTCTTTTTACCTTTTTCATTCTTTTTTGTTTATGTATTGGGTAGTAAGAATTGAAATTCAAATGATACCTGGTGACTTTAAGACTAGGAGGTTACCTCCCAAGCTATTGAGGCTATTGGACTGTTTGCGATCATCACATCTTTTACCATGTTTAGGTTGACCTCAGGTCAAATTACCTCATTCATCTTATCCTCTTTCACTGTTGATCTCCAGGGACACAATATTTAATGTGGATACAGTCCAAACAACCACAAGTCTCACCCTTGCTTCAAATCCATCAGCTAACACATCTTTTGGTCCAGTGACAATTCCTACCACTTTTCTACCACCAAACATGTTGTGAATTTCTGAGTCAAATGACCAATTTGTAAAACTTAATTGATATAACATCAGAACATCAAGACCAACATCTTGTCTCTAATATACTTGTTTGCCTAAATCCATGACCTGAAGGCAAAAGTGCCTGTCTGGTTTCTCCAACAATATTCCTTAGTGTGGAAATTTGTATAGATGTTTTAGAACCACTGCAGTTAGCTCAATCAGAACAGTGATCAAGCAACAAATGCTGGAAACTAATGTCGTTAACTTTAAGGCTAATTTCAGGTAGGCAATCACTAGGCCGAACTGTTCTGTTATCACTATTCATCTTGTCAAGTTTCCCTAGTGCAACTGGCATTGATCAACAGGGGCTATTCAGAAAGGAGTAAGTGGAGTAGAGATTGTGGCTTTTTATAGTTTAATAGGCTACAGATTGGGAAATTAATAGATGGGGAAGGTAGGTGTGGTAGTAGCAACAGGAAATTGGGAGACAAGTAGATGGGAAAATTGGTAGGGCAAAGGGGAGTAAGGGGACCACAGGTGTGAGTTGAGGTCAGAATGTGAAATTACAAACTGGTCAATCAGGGTGGTAGCTGAGGTTGGATTTTGACAGAGTACTTCACTTTTTTTTTTGGAAACTGGTCAATGTGTATTACTCAACATTGAGGACATGCTGCAGACCATCAAAAAGTGTTGAAAGTTAAAAAAAAATAAAAAATACAAAAGAAGATACTTAGATCTTAATAGATCTACAAAATGATCAATATTCTCTAAACCTACTTCTTTACAACAAAAGTAGAATGATATTATACAATTCGATTTAACTTTCTGAATGGAATTGGATCTATCTTCACAGCACCTCCCATTTTTCTCTCTACAACTGTCCACCAGATGCATTGTGGTATGATCCTCCTCCACCACTTCTTTTGGCTTTTGCTACCTCTTCTTTTCATTCAGCAGCTAAGCAAATTTGCAGTATGCTCCAGCATGGTCCAACTTGTCTTTATTATGTTGAGAAATAAGAGACCAAAGTGGTGCTGTAAGAAGCACTTGGAAACTATGATGGCCCCCTTTTTCTTCGGAACTTCTTGTGTCAGGCATGTTCTTTTAACCACCAATCCAATAAAGCATTTTACCTTAACTAACACAAAGTGCACTAGGTACCATTACTTGTAATAATTCTGGTTGATTTTATTAGAAGTAATGGTTCCTACTTCCTAGTGCACCTAATTGTACGACACTTCTAGTTGATTGTTAGAGCTGTAATTCGTCTGCAATTTTCATAATCTTATCCCTCTAGTGGTCAAAAAATTATTGCGTAGTTAGATTTCTTTCATTGTTGAAAATGATTCTCTCTTCTTAAGAAACAAGGGTGTATAATGTTGTTTTAATGCTTGTACTAAGCTAGTTTACTCTGAGGCTAGCCCCATTCTGCATTAACTTAGAACTTAGAAGGTTGAATCTGCTTGCTAGCGTGAAATAATGTTGCATGGGTTCTTAGTGCTGATTGAAAGAAAATCATGAGGTTGTGTAATAAGGTCATCTGAAGTTTAATTTCACTTCGAGTAAAGATTTTGGCGCTTAAAAGCTATTCAATTGAAGAGGAAGTATCAGTTTCCTGTACCAGCAACAATATGTCTACAGTAGAATAACTAGTGATTGTTAGAATTGGGAGTATAGATTCTTCTAGTTTCTGCAAAATCAGATACGATATTTAGGAGTATTTTTCTAAAAGGTCGGGAATGAAGATTGGTAATCCTGTTTCTTTATGATATTGATTAGCTTTTGCAAATTCTACATAACTAACACTAGTTTCTGGTTTCCTATTGCAGTTAACTTGTAAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCA</genome_strand>
        <mrna_strand>CATCCCTTTCCCTTTTCCAACGAATCTCTCAGAATCATAAATTC------AAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCTATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGATTTCATTTTCTTGGATTCTTGTTTCAGGGTGTATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGGAAAGGGGTTAAC----TTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTCTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACAAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTTGTAAGGTAACTACATCAGAAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339367" ref_strand="+" ref_description="SGN-U339367        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|34913184|ref|NP_917939.1| similar to acid phosphatase [Oryza sativa (japonica cultivar-group)] gi|24414098|dbj|BAC22345.1| putative Sur2p: syringomycin response protein [Oryza sativa (japonica cultivar-group)](evalue: 1e-05, score=54.3)">
      <seq>gttaggccgaatctcacaactgtcagcactatcattgtattaaccccagctcaactctcatgttaatacatacatttacatacatatgccccagatctgttctcatatttccaataattgtttctctaagatttgccaaaatcaccaccagtaatttcaatgctttgttggggctaaagatttgatcttttgttcaagaacttatttgggttttcattttcttggattcttgtttcaatgttgtaatgtgcttgttgtatgtagatcttgagctgggaatttcataatttagagtgttggattgagggaaaagggataagggaaagggggtaacttttttttttttttaaaaagggggctaaaaaatggggttttggaagggttatgtaattaataaagggatgggaacttttcccccaaaaggggggtatgggttgaatgcagggttctatcacttattgcctcccagggaaaaaaatcccctccttactaggaaaaagaaaattgccaaaaacttattcccccggccttctgtggtaaaaggggtcctttttcaaaagttttttcaggaaatggtggcccacttgctctttttgtaaacttgaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="19458" stop="18258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19158" g_stop="18562" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U339367" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19158" e_stop="18562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG</genome_strand>
        <mrna_strand>GTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAAC-TTTTTTTTTTTTTTAAAAAGGGGGCTAAAAAATGGGGTTTTGGAAGGGTTATGTAATTAATAAAGGGATGGGAACTTTTCCCCCAAAAGGGGGGTATGGGTTGAATGCAGGGTTCTATCACTTATTGCCTCCCAGGGAAAAAAATCCCCTCCTTACTAGGAAAAAGAAAATTGCCAAAAACTTATTCCCCCGGCCTTCTGTGGTAAAAGGGGTCCTTTTTCAAAAGTTTTTTCAGGAAATGGTGGCCCACTTGCTCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342473" ref_strand="+" ref_description="SGN-U342473        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cacaacaacatagagttgttaatcatgttgatgacagcaacagcaccttgttagaacgcagtggaactgccagccaaatttatggttattctctggccccgtcggtattgcatcaaactgttgcaggctcaatacatcaaaatgctgttggctcactggcaggacctgtgggaggtgttgtggccatggatggagctggagaaggtaatttagtgaaaggaggttcatgtgttggagttcatggagggactctagttgatcatacacctagtcaaataggaagtcatactggtcagttatatggaccccctggtgatgcacacacctatgcttataggtcgccatcctactttgaagcatcgggctctatggggttgccaaacaccatgcctggtgatgcttataggcctccaccatatttggaaggctctatggggttgccaaacaacataccgggtgatgcttataggccaaaccaatacatgaaatgctccaacggcttgcaaaaaaacatatctggtgatgctaatcagcctccaccatacatggaaggctctgcacggttgccaaacaccatacctgcaccatatcagtttgctgattctgttccatctgctgcccttgctcatncttcaccctncttgtactggaagagatagttttgcattgggcaggcattatttctaacgtagtttcccttttgtagtatacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="24129" stop="25443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24429" g_stop="25143" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-U342473" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24429" e_stop="25143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAACATAGAGTTGTTAATCATGTTGATGACAGCAACAGCACCTTGTTAGAACGCAGTGGAACTGCCAGCCAAATTTATGGTTATTCTCTGGCCCCGTCGGTATTGCATCAAACTGTTGCAGGCTCAATACATCAAAATGCTGTTGGCTCACTGGCAGGACCTGTGGGAGGTGTTGTGGCCATGGATGGAGCTGGAGCAGGTAATTTAGTGAAAGGAGGTTCATGTGTTGGAGTTCATGGAGGGACTCTAGTTGATCATACACCTAGTCAAATAGGAAGTCATACTGGTCAGTTATATGGACCCCCTGGTGATGCACACACCTATGCTTATAGGTCGCCATCCTACTTTGAAGCATCGGGCTCTATGGGGTTGCCAAACACCATGCCTGGTGATGCTTATAGGCCTCCACCATATTTGGAAGGCTCTATGGGGTTGCCAAACAACATACCGGGTGATGCTTATAGGCCAAACCAATACATGAAATGCTCCAACGGCTTGCAAAAAAACATATCTGGTGATGCTAATCAGCCTCCACCATACATGGAAGGCTCTGCACGGTTGCCAAACACCATACCTGCACCATATCAGTTTGCTGATTCTGTTCCATCTGCTGCCCTTGCTCATCCTTCACCCTCCTTGTACTGGAAGAGATAGTTTTGCATTGGGCAGGCATTATTTCTAACGTAGTTTCCCTTTTGTAGTATACCCAA</genome_strand>
        <mrna_strand>CACAACAACATAGAGTTGTTAATCATGTTGATGACAGCAACAGCACCTTGTTAGAACGCAGTGGAACTGCCAGCCAAATTTATGGTTATTCTCTGGCCCCGTCGGTATTGCATCAAACTGTTGCAGGCTCAATACATCAAAATGCTGTTGGCTCACTGGCAGGACCTGTGGGAGGTGTTGTGGCCATGGATGGAGCTGGAGAAGGTAATTTAGTGAAAGGAGGTTCATGTGTTGGAGTTCATGGAGGGACTCTAGTTGATCATACACCTAGTCAAATAGGAAGTCATACTGGTCAGTTATATGGACCCCCTGGTGATGCACACACCTATGCTTATAGGTCGCCATCCTACTTTGAAGCATCGGGCTCTATGGGGTTGCCAAACACCATGCCTGGTGATGCTTATAGGCCTCCACCATATTTGGAAGGCTCTATGGGGTTGCCAAACAACATACCGGGTGATGCTTATAGGCCAAACCAATACATGAAATGCTCCAACGGCTTGCAAAAAAACATATCTGGTGATGCTAATCAGCCTCCACCATACATGGAAGGCTCTGCACGGTTGCCAAACACCATACCTGCACCATATCAGTTTGCTGATTCTGTTCCATCTGCTGCCCTTGCTCATNCTTCACCCTNCTTGTACTGGAAGAGATAGTTTTGCATTGGGCAGGCATTATTTCTAACGTAGTTTCCCTTTTGTAGTATACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333298" ref_strand="-" ref_description="SGN-U333298        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:2703175-2703598 FORWARD | Aliases: T16O11.19(evalue: 2e-09, score=58.2) genbank/nr: hypothetical(evalue: 4e-08, score=59.7)">
      <seq>acgggagggaggagttctatttttctgtgaactccgctaatcattcttcttttcaaattactacattcggagggagaaaaaagccctaaactttggtctggagaggtcgaaaatggtggatgggtcgaataacgtggatgtagagaagctgatctccttcagtaaggatcttgttcagtttttgaaagaagataaagatgtcagcttcttgaatcagtgtaaagagcaatttaatgcccttcaatcacactgccaatctgagtaccaggctcttcagaattccattcaagattatcaaggaaagataaatgcatgtaagcagagaacaacagaagcacaatctgaagctgctgcagaggctgaaatagataagctgcagaaagagttagaacaggagatccagagagaacaactgcttagagaagaacttacagttataaccgatgagatcaatgatttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="31179" stop="28375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30879" g_stop="30590" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28936" g_stop="28791" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="434" r_length="144" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88">
            <donor d_prob="0.356" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28702" g_stop="28675" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="462" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U333298" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333298" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30879" e_stop="30590"/>
          <exon e_start="28936" e_stop="28791"/>
          <exon e_start="28702" e_stop="28675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAGGTGGGGTTCTTGTATTTCGTTTTTAATTTTGTAAAATTGAGGGTTTGTTGAATTTCTTAGTGGCTTAAAGTTTGAATCTTTCTCAGTTGGAGATCTCCCCAATCCTCAGAGTCATAAGACTATGTGATAAAGAATAAGTTAGCTTCAAGATTGAACCTTTGGAATTGTGTGTATAATGTTCTTACTGTTGAATTTTGATATTTTTGTTTTGGAAATGGTAGGATGGTTACTAAGTGAACCTCTTTCTGTGTTTACTTGAAGCATTTGGCCATGAAAATTGTGAGTATTTGAAAATTGGAGTTGGGTTTGGCCATGAATACAAATTCTGGGTTGTTTCTGAATTTTTATGATTGATTTGGAGTGAAGAAAGTTTTTGGTGTTTTTCAAATTCTTGAAAATGCAAGTTGAATTTTATGGCCAAATGCTCCCTTAGCTAATGGATTATCCCAAGAGACAACCTACTGGTCAGGAGGTTACAATTTAAGCTGCAGATCTCGGTGGTGTCACTCATACTAGCTTAGTAGTGCCTGACTGGACCTTCCCTACTTCCTATGAACAATGTGAGAGAGAAAAAACATTGGCTTAAAGATTGCAACTTTTAATCTGATATAGACTGAGTTTACAATGTGCTTTGCTGTTTAATGCAGTTTCTTTACTCCTCGTAGCACTTCTGCTTTATAGATACTTCTTTACACTTGAAACCTTGCTTTTTAGTGATATCTTTTTTGGATGTTTCATTCAGTAACATTCCTTTAATGAAAGAGAAAAATGGGGGTTGAATCAACTTCTTATTAGTTTAATTAGTTTAAAGATTGAACCCAAGGGACATCTGCCTTGAGGCTGTAAGTTGAACCACAGTGCATAGTTCAAACCTCAGGGTCACCACGACGCAATAGGATCTTCCTGGATCCTTAAAAACTATGTAGTGAAAAAAAAACTCGGCGTAAGATTGGAATTTTGAATCAATGTAGACAAACTTTACAATGTTCTTGCATCTGGATGATTCTTTTTCTTAGTACCAATTATTAGTGGATAAGTCTCTTAACGTTGACCTGAAACACCATTTTCTGTTTGCTAGCTTACTGGAGTGTCAGGTCAAAATTTCTTCTTGCAAAATATCGTCATTTCTGGATGTTTCTTTTATTAGTAACATTTTGGGGAGTGTGGAGTCTCTGTCTCTGTCTTTTATACCTTCATGAGTACTACTGCTGGAATCTGGATCCTCTCACGCCAACCCTCATGAGATTTTTTTGGAATGTACTATATATAGTGTAAAAATTGGTGCTATTACCTACTTATTCCTGATAGTTTTGGTGATATTTCTACTTTTGGTGCAGTTTGTTTCCGAGTTGAAGTCCTTTTAGCCAATTATAATGCAAAAATATGTAGAGGCCCAGTACGTGTGTCTAGTTTAATGATTAGCTCAACAGACCACTACTTTGGTTCCTTTCGAGGGCCCAACCCTGCTCCTATGATTTCTCTCTGGCCTCAGACATACATGTTGTTTTTCTTATTAAATAAGTTGGAAATTGGAATTATGTTGGTATTAAGTGTCTTTGTTCAAGCATTAATTTATGATTGTACTGGGAGATGTTCGGATTTGTGAATTTGAAAGTATTAAATGACTAATTTCAAGTCATTGCATACACTCAGATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAAGTATATTAAACAACGTTAGATGCATGAATTTGTATTTCTCAGATAATTTAGTGTTATGCTTACTGATTGACACCTTTTTTAAACACAGTTATAACCGATGAGATCAATGATTTAGA</genome_strand>
        <mrna_strand>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTT--ACAG........................................................................................TTATAACCGATGAGATCAATGATTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327257" ref_strand="+" ref_description="SGN-U327257        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC017 | no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) protein; similar to NAM protein GI:6066595 (Petunia hybrida); nam-like protein 9 (GI:21105746) (Petunia x hybrida); NAC1 GI:7716952 (Medicago truncatula) | chr1:12451431-12454120 FORWARD | Aliases: F12G12.30, ANAC017(evalue: 5e-33, score=139) genbank/nr: gi|21105742|gb|AAM34770.1| nam-like protein 7 [Petunia x hybrida](evalue: 1e-133, score=479)">
      <seq>agtgggcctggccccaagaatggtgagcaatatggtgcaccttttagagaagaggactggcttgatgatgagcgcctaaatgccaaagtctctgtacagccggagagcccgagagatcaggagaatactgcaaagaacattaatgtagttcctgatcctgatgatgcaattgaggaattgctgaagcgtccttttactgtagataacaattttgcattggagcagtttgttcaagaggaagatactgaaagcaccttgctaaatcagtcttcgagggatgtgaatttatacaatcattgtgctgtcgctgggccaagctgccagcagtataatgcgagggcgagctttgatctgacagagtcaggcacatcaccattacatttgcatgaggcaccagaagtctcatctgctccggtgaatcctgaaaagcccccatacgcggtggaagaggatttcttggaagattttttggagatggatgacctccttgttgtcgatccaaatgttcaaaactttgatcacggaaccccaaatggtcaagtctttgacaaacctgctggaaacctggagactctgcagtttgatgactttgatggcttatcagagtttgacctgtatcatgatgcaccttcacttcttgataatgtggggacaccagtagtggggcaaattgctgaaccatacatgaacaactttgtgaacggaattacatatcctgactcaactacatacatgagcgctttccaaaatgacatgatgaacaaccagcagatgcgcttgaatcatgaaaatcagataaacaatcaattttggatgcatgatgaaagattcggcgtcttcaaccccattgaaggagatcaatcagttgttgatcaatcatcttcaggtgtggtaaatgataataatatggcaaattatcctatgggcgctaatcaaaatctagccaaaaaggatgatggtacgcagtcgtggttctcctctaatttgtgggctttcgtggattctatacccacaactcctgcttcagctgctgaaagtgctcttgtagttaacagggcctttgagcgtatgtctagctttagtagaatgaaattaaatgtcgggaacatgaatgttgctgcaggtaatgcctctgcaacttcaagtagttctggcaaaggcaaatatggattatgttgtatttctttacttggagtactttgtgcattcttgtgggtggtaataggaacttctgctaaaatcgcggggacatagatgatattctcataaacatgtgcagagttttcttttgctatttatcatctggctttttgccagaatcaatggaaaggtgagcatatatcttacaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="41806" stop="44046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42106" g_stop="42991" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="886" r_length="886" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42992" i_stop="43279" i_length="288">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43280" g_stop="43753" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="887" r_stop="1360" r_length="474" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-U327257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42106" e_stop="42991"/>
          <exon e_start="43280" e_stop="43753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGCCTGGCCCCAAGAATGGTGAGCAATATGGTGCACCTTTTAGAGAAGAGGACTGGCTTGATGATGAGCGCCTAAATGCCAAAGTCTCTGTACAGCCGGAGAGCCCGAGAGATCAGGAGAATACTGCAAAGAACATTAATGTAGTTCCTGATCCTGATGATGCAATTGAGGAATTGCTGAAGCGTCCTTTTACTGTAGATAACAATTTTGCATTGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAATCATCTTCAGGTATTCAAAGAACTCCATATAGCAATGCTGCTAGTTTTGCTTGGCTAATGCCATAATGTTATCATACTTCTCAGATTTGTATAAACACATTGTTTTATGTTATCTGACTTGCTTGAGCTCTTGAACAGATGGATGGTATTGAATAACCATGTCATCTTCAGTAAGGCAAGAACTCTTTTGCCCAAGTGGAAATGGGGGAGTTTGAGCCAAGCTTCAAGAGCTCGTCTGCTTTTAATATTGGTGTTAGATTTTTTTTTTCTAACTTTAGCAAGTTTTGGCAATGTTTAGGTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAGGTGAGCATATATCTTACAAATAATTGGAGA</genome_strand>
        <mrna_strand>AGTGGGCCTGGCCCCAAGAATGGTGAGCAATATGGTGCACCTTTTAGAGAAGAGGACTGGCTTGATGATGAGCGCCTAAATGCCAAAGTCTCTGTACAGCCGGAGAGCCCGAGAGATCAGGAGAATACTGCAAAGAACATTAATGTAGTTCCTGATCCTGATGATGCAATTGAGGAATTGCTGAAGCGTCCTTTTACTGTAGATAACAATTTTGCATTGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAATCATCTTCAG................................................................................................................................................................................................................................................................................................GTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAGGTGAGCATATATCTTACAAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324579" ref_strand="+" ref_description="SGN-U324579        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G71810.1 | Symbol: None | ABC1 family protein, contains Pfam domain, PF03109: ABC1 family | chr1:27006076-27011838 REVERSE | Aliases: F14O23.19, F14O23_19 (evalue: 2e-43, score=173) genbank/nr: gi|50929063|ref|XP_474059.1| OSJNBb0079B02.1 [Oryza sativa (japonica cultivar-group)] >gi|38344898|emb|CAE02969.2| OSJNBb0079B02.1 [Oryza sativa (japonica cultivar-group)] (evalue: 3e-43, score=179)">
      <seq>gggcattgctattggcatcaacccagaatacaaagtcctgggtagtacatacccatggattgctagaaaagtactaactgatagctcaccgaaactaaaagcttctttaagagcacttctttataaggatggtcagttcaggattgatcgactagagtctctcttatcagagtctctccgtgccaagacagaaagaaccctgatagagaatcaaaatggtgggattgattcgaaggtcattatcaagcaaattctttcttttacactggatgataagggtgcctttatcagggaaattctacttgaggaattttctaagggtatggttgcacttggtgttgcaactgtcgattcagtaacaaatgcagttgcaactacattaccgttctctccatcccaaccatcttcaatgactgatgaagatattactaatcttagaaatttgcaacgtctattactgttgatatcaggactccaagaaaatgagaaccccagcatgaaggttaatggagttagaacatccaacaagcagatgatatttttaaacggagcacctcttcagcaatttgaagctgtccaagaatatctacccctcctttcagttttacctgagcttccacaagagatgcaacaacagttacttcgcttgcctgctgatttcgctggaaagctggcttcccgagtcgctgcaaggacgttaaagagggtattcttgtgaaatatttcagcttatcatggaaaaagcaagatattctatattggtactcctcacagaacattttggtttgtggattttccaattatcaatcaagcttgccagtcctaactcctaaatgaagagatcttggtcgattttatcttaaaaggcagagaagatcagttcttgaaactatgcatttgcaagaaatacagaagtctagaaatatatataggttgtacgaaatatagtatatatgaaggcaaaatgttgtaattctcctattacaatacactacttaaaaaaaaaaattcttgtaccattagactttagaactagctgaaatgtgccatttgtgcctggctggagaagggaaggaccgccttccccaaggaatatagcgttggactggctgattattttgctcgatgatgcatacactgagaccgacggcgttggccagacttctattacagagtgtttatgttgacagaaatggcatttgtctttcttttttagttattcacaagaacatacatacacattatgatccccatcgtgcagtctgagaaagaggtaaatgtaaacagaccttactctatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="49768" stop="44785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49468" g_stop="49342" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49341" i_stop="48669" i_length="673">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48668" g_stop="48624" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="172" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48623" i_stop="48428" i_length="196">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48427" g_stop="48323" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="277" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48322" i_stop="48208" i_length="115">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48207" g_stop="48166" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="319" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48165" i_stop="47448" i_length="718">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47447" g_stop="47268" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="499" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47267" i_stop="46321" i_length="947">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46320" g_stop="46207" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="613" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46206" i_stop="45779" i_length="428">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45778" g_stop="45085" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="1304" r_length="691" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U324579" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1307</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49468" e_stop="49342"/>
          <exon e_start="48668" e_stop="48624"/>
          <exon e_start="48427" e_stop="48323"/>
          <exon e_start="48207" e_stop="48166"/>
          <exon e_start="47447" e_stop="47268"/>
          <exon e_start="46320" e_stop="46207"/>
          <exon e_start="45778" e_stop="45085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATTGCTATTGGCATCAACCCAGAATACAAAGTCCTGGGTAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGATAGCTCACCGAAACTAAAAGCTTCTTTAAGAGCACTTCTTTATAAGGTACACGCAAAAGAGGTCTCTCATTCTCTTTCTTAACACCTACTTGCAGCCTTCCTCTTGCTGAAGCAACTTGACAGACTTCTTACTAGTTCAGATTTCTGACCTCCATTTTGATTTTTGGTGCCACAGCCAAACCACTAACAATTATCCTTGCTAGTGGAGGAAAAAGTTATAAATCTTTAGTAGTCGACTAGTTGTATTCATGAATTCAAATGATTTAATTGGAAATGAATATTCAAGTATGTCACACTGTTCATTGTCCACAAAACGGAACTGTTTCTTCTTCGGCATGTTACAGAAACAATGGATTGTTTTATATGTTCAAAATGATGGGCAACAAGCTAGGTTCCCATCGTGTATGGATGTAGCTATGCTGGCAATGACTTTCTTTGCTATGCTGTTCTTTGCTGTTGTCATTATTAAACATAGTACTTGATACACGCTTGATTCCAACTAACTATGAATACTTTGAAGGGCCTCTCTTCTGAAAAGGAAATTGTAAGACTAATTTATTCACCGTTAGGTAGAGAAATATCAAACTTGAAGCCTGAGACAGTATACAGAAGTTTTACTGGTTGCCGATGCTATTCTACTTAAAAATTAATGATTTCAAGTTCAACTGTTTATGTAGTCATGATAAACTATAACTCCATGCTTTGAATTTTGATTATAGGATGGTCAGTTCAGGATTGATCGACTAGAGTCTCTCTTATCAGAGGTAAGCTTTTTGATATGTTTGTACACATCACTTTTGTATTTTGTAAGCATATACCTGACAGTTACAGAGTGAATGAAGCCACAGCTGAATTCTTGTTTTTCTTGATATTTGAGTTATATACGAGGAAATTGTTTCACCATATTAGCTTTTTGTTTCTGATATACAAGCGTAGATCCTGAATCTCTCTTCGTAACAGTCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAGAATCAAAATGGTGGGATTGATTCGAAGGTCATTATCAAGCAAATTCTTTCTTTTACACTGGATGATAAGGTATTCTATCTCAGAAAATATTGCACTTTCAAACAGACCAGAGGCTGGATACATCCAGGAAAAAGGGAAGAAAAAAATACGCACACTACTTATTAATTCATTTTTTTATCTTCAGGGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAGGTATGGACTCGTGTTTTAATATTACAAGGATGCAAGCAAACTTCTTAGGAATGCTCAGCACCTTATTTTTACTAAATTCAAACAGGTGATGAATACTATAATTGCTTAATTCTTTAGGAAGTTTCAGTTTCATTATGTTTAAGTCAATTTTTTTGAAGTCATCGGATTATTATGAATACTAACTGGTTTGAATTAGTAGCAGTCGTATCTGGTTGGTGTTTCTAATTCAGATATTTTTGACAATTGAGCGTTCTCATCTTTATTCTTTTCCAAAAAAAAAAAAATAGTTCCAGGAGAAGTACCTAGAAAAAATATAGAAAAAGGAAAGTTGAAGAGAGGTTTTGCTATCATGCTGGTGATTTGTGGATGAAAATGCAAGACCCAATACCTTTTAGAAAGTTAGAATCTGCTTAACCAGTGAACATGACATGGAAACTAAAAATATCAAGTGTAGTTCCAGAAATCGGTGCTTTTGATGTTGAGAGTATGCCTTCAGCAGTTTGAAGTGGTACCTAAATGCTAATGCGAGTAATATAGGAAACTCAAATTGGTGAATTGCCACTTCATGTTTGATGTTTTGAGAAGTAGCTAACGTAATTCCTTTTCTGTGTTTGTTGAGTTTCCGCTGGTGTATCCAAAATTTCCAAAAGTAGGGTGTACTGTCATTCAAGTCATCTGGTGGTTGTATTTGGAATTTACTATTTATCCCAATTTACAGGGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATGGTAAGAGAATCTTGCTAATAAAATGAATGCATATAAAACCTTCATGATGTTAATTGCTCCTCCATTATGGGAAAATATCTGTAGAAAGTGTTGATATGGATTTGCATGCATGTTAATATTACCCTGTTTTCCACTTTTGATATTAGAGAGAGACTATCCACATTTTACTCCCATAACATGCATGTCTTCTCAAAGGGAAAACATTCAGATACATGAACAACTAGATATTGGAGCTTAGAGACACCAGAGAAAGCATCAGTTAAATGATTAGAATCCAGTAACTTAGTTACATTAGCTTGTTATCACATATCTTACATTTCTTTCGGAATGCCTTAATTTCTTTGCAAATATTTATGTGGCCCCCCTTAAATACCAATTGCTTGCGTTGCTTACTATTATGACACCACTCATCATATTTATTTCTTGATGCGTGCTAGAATATATATGGACAAATTTTCTTTGCCAGCTTAGAATGTCACTTCACATTATCACCAATACCCTTCAGGGTGGCCCAGTAGTTCGGGCTTGGGACTTCCATATTGGAGGGCTCAAGTTCGAAGCCAGCGAAAGCAAAGGGTTCGCCTTCTGGGTCGAGGGGTTACCTCTCCTATGTGGTTTGCAAGTTATTGCATAAGAGCGGGGGTTCAACCCTGTGCGTACCTTTGTAGCGGCTGCGGATTTCCCTTGTCATAAAAGAAAATTAAAATTATCACCAATTCTGGTCTCCAAGCTTCTAGGCTAGTTACTTATTCTGTGAATGGATAATCTCCCAGCTACTGAATTGTTATGCTATCTAATATCCATAAGTCCTGTGCATCTGTAATACTTGGTTTAACTACGGATACCCCATTATTGATCATTCATTCATTGCCAAATTGATGTTTATTGTTATTGCACGATTACTTGATATGTTAGTAAATTGTGGACTCCTAATTTATTCTTTGTAGAAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAGGTAAAGCTCACGAGATTTATTATCTCCATGATACAAAACCAATTTTATGATTGGTCGCATTTGTATGATAGAATTTTAATCCAGTCTTTGGATGGTGTTTATTGTTAAAAAAAAAATGCCATATGGGCTTTAACTTCAGAAAATTGAGCGCACAGCGCACCCCCTTTTTTACCTCCCTTACACTAAACATTATTTTCCACCAGTTACTTACGAAGCTGTACAAGTCTATTTTTGAGTGTGTGATTGCTCTCAGAGAAAAGGTGTACAGAGAATTTTGTAACGGTGATTATTCCATTTTGATGGCTTATATTTTCAAATTTGTCTTCTCATTACTGCCTTAATCAGCAAATGTATATACGGGTCAATTGGTATATAGATAGGCTTTGGAAACTAAACCAGCATTGAGAGTCTGACTTTATATTTTGCAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGACTTTAGAACTAGCTGAAATGTGCCATTTGTGCCTGGCTGGAGAAGGGAAGAGACCGCCTTCCCCAAGGAATATAGCGTTGGACTGGCTGATTATTTTGCTCGATGATGCATACACTGAGACCGACGGCGTTGGCCAGACTTCTATTACAGAGTGTTTATGTTGACAGAAATGGCATTTGTCTTTCTTTTTAGTTTATTCACAAGAACCATACATACACATTATGATCCCATCGGTGCAGTCTGAGAAAGAGGTAAAATGTAAACAGACCTTACTCTATCTTTG</genome_strand>
        <mrna_strand>GGGCATTGCTATTGGCATCAACCCAGAATACAAAGTCCTGGGTAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGATAGCTCACCGAAACTAAAAGCTTCTTTAAGAGCACTTCTTTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCAGTTCAGGATTGATCGACTAGAGTCTCTCTTATCAGAG....................................................................................................................................................................................................TCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAGAATCAAAATGGTGGGATTGATTCGAAGGTCATTATCAAGCAAATTCTTTCTTTTACACTGGATGATAAG...................................................................................................................GGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGACTTTAGAACTAGCTGAAATGTGCCATTTGTGCCTGGCTGGAGAAGGGAAG-GACCGCCTTCCCCAAGGAATATAGCGTTGGACTGGCTGATTATTTTGCTCGATGATGCATACACTGAGACCGACGGCGTTGGCCAGACTTCTATTACAGAGTGTTTATGTTGACAGAAATGGCATTTGTCTTTCTTTTTTAGTTATTCACAAGAA-CATACATACACATTATGATCCCCATCGTGCAGTCTGAGAAAGAGGT-AAATGTAAACAGACCTTACTCTATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343065" ref_strand="+" ref_description="SGN-U343065        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G71810.1 | Symbol: None | ABC1 family protein, contains Pfam domain, PF03109: ABC1 family | chr1:27006076-27011838 REVERSE | Aliases: F14O23.19, F14O23_19 (evalue: 4e-90, score=233) genbank/nr: gi|19698835|gb|AAL91153.1| unknown protein [Arabidopsis thaliana](evalue: 6e-61, score=236)">
      <seq>ctgtcgcagcagcatcactgggacaggtctatcaagctaggcttcgttctaccagggaagttgttgctgtgaaggtgcagagacctggagttcaaagtgcaatctccttggacatattgattttacgatatctcgcaggcttaataaagaaggcaggaaaacttaataccgaccttcaggcagttgttgatgagtgggcctcaagtctttttcgggtggtcaaattgaatgcaggagatggactacaaacaagaagcacggaatggagtcaaatttcggcaattgtatggttcaatacaggatgttgtggttcctgaaatgaatttggcactgacaacccggaaagtgctcattatgcagtggctagaggggcaaaagctggctggggtcaaggatctttatttggttgaggtaggggtttattgctcattcaatcaacttctagagtatggattctatcatgcagatccacatcctggaaaccttcttcgtacatatgacgggaaactagcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="56590" stop="52192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56290" g_stop="56265" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56264" i_stop="56156" i_length="109">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.038" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56155" g_stop="56003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="179" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="55830" i_length="173">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55829" g_stop="55794" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="215" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55793" i_stop="54948" i_length="846">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54947" g_stop="54885" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="278" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54884" i_stop="53573" i_length="1312">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53572" g_stop="53482" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="369" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53481" i_stop="52723" i_length="759">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52722" g_stop="52681" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="411" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52680" i_stop="52597" i_length="84">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52596" g_stop="52492" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="516" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U343065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56290" e_stop="56265"/>
          <exon e_start="56155" e_stop="56003"/>
          <exon e_start="55829" e_stop="55794"/>
          <exon e_start="54947" e_stop="54885"/>
          <exon e_start="53572" e_stop="53482"/>
          <exon e_start="52722" e_stop="52681"/>
          <exon e_start="52596" e_stop="52492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCGCAGCAGCATCACTTGGACAGGTCTGTGAAGCAGCGGACTTCTGTTTCTTAGTTTAAAATTAGGTGGACTTGTACTCACTCTTAGTATAATCAAAGGTGAAAGAAACTAAATCTGAGTTCCATCTTTAAGGTCTATCAAGCTAGGCTTCGTTCTACCAGGGAAGTTGTTGCTGTGAAGGTGCAGAGACCTGGAGTTCAAAGTGCAATCTCCTTGGACATATTGATTTTACGATATCTCGCAGGCTTAATAAAGAAGGCAGGAAAACTTAATACCGACCTTCAGGTATTATGATAAAAGTAAATTCCTAGCTGAGAGAGGAAAAATGAGATGGGACATGGAACAGTGATTGATTTAGGCTGATCTGAAATTTAGTGTGCACAAGCATCTATTTCCAAAATGACAATATGTATTCTTTGCAATTACTAGTCCTGAGCACATTTTTTCTCGATATACAGGCAGTTGTTGATGAGTGGGCCTCAAGTCTTTTTCGGGTATGATTTTGTATCTTCATCTTCCTAGTAAAATCTCATATGTTTATGTGTGTCCACATAATTCCTCTCCTACTATTTGATAATTGACATCAAAGTTATAAAAAAACCATTGGAAGAAGCCCTTTGGTGTGAATGACATTGTTTCTGTTATATACTAACTGGTATAGTTTCATCTTTAGATTAAGGCATAATTGATTGATTGTTGGTTGTTGTCAACTATTTAATTTGATGTCTTCTACTTCAGTTCCTATCTGTGAGTTTCAACATTTAGTATTACTTGATAAGCCTAGACTTAAAATTTGATCAACTGATCAATACTTTTATTCTTTTTTAGGTTCATATTCTGTCATTGCAAGAGGAATTAATTTTTCCTGTAGTATTCCATAATTAAGTTGTACACATTATTGTGGTTTGGGAAAGACAGACAGCATAAGCTTCGGGCATTTTGAAAAAGAACAGTTTCGGTCTATACATAGTAGATTTATTACTGGAGACTATATTTCTTTTGGAAGATGAATGGAAAGTTGTAGGGAGAAAATTAGGATTTCTGTATTCATTTAATCAAGAGGAAACATATCATAGTATCAAAGAATAACATGTCAACATTAAACTACCTTTTCTACATGAACATTTCAGATACCTCTATGGAAAACCAGAAAATCTTTGATTAGTACTAGTCTGGTAGTTTGACCCTTTCTTTTTGTCTTGATCTTTCATTTTAACTGAACATCCTCATATATCATATATATATATATATATATATATATATATATATAAAATCAAAATTAGCAATAACTACTTCTAATAATAAGGAGGAATATTCTTAGTACTTTATATTGAATACAGGTGGTCAAATTGAATGCAGGAGATGGACTACAAACAAGAAGCACGGAATGGAGTCAAATTTCGGTAAAATGATTTACCTGTTTGACTGTGTCCTCTATAAGATATCTGAAACCTGCATACCTTTAATCCAATCTCACTTAGAACATGATGAGTGAGTTAGCACCTTTAAGAATCTGACTGATGAGAGATTAATCACACTATTTTTGTGGTTAACCACAAGATAATTGATTCACCTCCAAGGTCTTTTACAGAATTTTCCAGTGGGTTTTGAACTTTATGAAATTCAATTAGTTTTTATCATGAGTTAAATATCCTAAATGTGTAAAATCTTTTTTTCTTTCTTATGAAACCGGGGCTAATTTGTAGCATTCTGTACTGGATTACCTGTTGCAGTTACTTCTGTTGATCTTATACGTTCTTGTCAAAGCTTTGTAGTCTATGACCCTTCTGCTGAAATACTAGTCTAATAATTTTCAATTTCAAGCCTTCTATTAAATTAATGTAAAAAGAAACCTTTCTTACAACAGTAAGATGTAATAGACATTTTGTTTATGCATCTTATTCATTATTATGGATTAGCATTTTGACCCTTACCCTTCTTCAAAGTTGATGGGAAAAAGCCAAAAAGAAAAGAAAGTTTTTTTTTGGTTGATGAGATAATTAAGCAGCGCGTAGGGATAGAAGTATTTCTTCCTATGTTCTTAATGAGCCAAAAAACAATATCAAACTGGGAAACTTTTGTAGAATGGAGAGAGATACATAGGAACTTAAGAAACTCCATCGACAAAGCTTGCTTACTGATTTCCTTTGTTTGGTTTTCTGATGCATCAAGACCAAGAGTAAACGCGTTCACTCTTCTTGCAAATGCCAGTGTGCGCTACTTTGGGGTTAATAAGAAGATGTAAAAAGGTGAACCAATGTGTTAAAAAAATGAGAAAAAGGGAAACTCCTGTGAAGTATTTGAAAACATGACAAATATAATGAAATGAACATATAAAGGAATGTGATCTCAATCTGATGTAACCTGCACAATTATTAGTATCAGGTCCATCATGAATGTCCACTTATTGGATATAGCAATACGGTAAGCTGCTCAACAACTATCAAAAGCCTGTGCCAGTAGAAAGTTCCCATGCACAATGTTACTTTAGTTGATTATCATAATTTGTAGCATTCTCATCTTTCCAACAATGACAAGAATTTCGTAATTTCCAGCTAAGCTGATAGTGCTTGCTTCATTTAACATCATAAATATTAAGACTGTATGCTACTCTTTAATTTGTGATTGCACATTCATGCATCTACTAAGATCATATGGAAAAATATTAGCATTATATTTGCATATGCGCTAAACTTTTTATAATTACATGGGCAGGCAATTGTATGGTTCAATACAGGATGTTGTGGTTCCTGAAATGAATTTGGCACTGACAACCCGGAAAGTGCTCATTATGCAGTGGCTAGAGGTAAAAACGCCATATCAGGAGCTAAAAGCTTCAGTCAAGTGATACCTACATCCTGTTAGCTTTTGGGTTAGTTTGTGACAAGTAATGTTAGACGCTCTATTATCTTTCAGCTAGTGTTCTTCCACATAGATATCTAAGTCAATAAAGACAGGATAAGTTAAAATTCTGAATTAAAACAAAAATGATATCTGGAGATTTTCTTACTGAAGGTCAATGAATTTGAGAACAGTTGGTCTCTTTCTTATCCTTGCTCTTCCGATTAAAACATGTCTTTTTGTGGTTCCTGTTGGCTTTCGGACAGTCCTTGACATTCATTCCCTGTGTATGTAGAAAAAGGTTACTTGATGGAGAGTTTCTCTAGATTAACATATTCACTAATTGTTGCACATTACCTACCATCTAGGAGGAGACAAGCAACCAGGAAAGATTATATAGTTACATCCAAAGAGGTTTAGATTACACTGATGTTGCGTTGATCAAACGTTTGAGAATCTTGTCTTTTCCTTGAAGAATTTCCTCTTTGTCATTAATGGTTTCGTTATATTGGGACATTTCAGATTTAAATACAGTAGATCCTAGAAGTAACATGTTCTCATTAGGCTCACTGATTTATGTATTAACTCAGCAATGTGGAGAGTGTCAAGAATTTTCTTTTTAGTTCCAATGAGGTGGAATATTTTATAAACTGGTGTATGTTGTCTCCTAATGTTATGAAGCTTAGACATCTTGCTCATGTTACTACACCTTTCTCTTGGCTAGGGGCAAAAGCTGGCTGGGGTCAAGGATCTTTATTTGGTTGAGGTTAAGTCGTGAAACTCATTTTCCTCAATGTTTGTGTGTTTTTCCACTTTGAACCATGCTCTAAAGTGAAATTGATGTTCACAGGTAGGGGTTTATTGCTCATTCAATCAACTTCTAGAGTATGGATTCTATCATGCAGATCCACATCCTGGAAACCTTCTTCGTACATATGACGGGAAACTAGCCTAC</genome_strand>
        <mrna_strand>CTGTCGCAGCAGCATCACTGGGACAG.............................................................................................................GTCTATCAAGCTAGGCTTCGTTCTACCAGGGAAGTTGTTGCTGTGAAGGTGCAGAGACCTGGAGTTCAAAGTGCAATCTCCTTGGACATATTGATTTTACGATATCTCGCAGGCTTAATAAAGAAGGCAGGAAAACTTAATACCGACCTTCAG.............................................................................................................................................................................GCAGTTGTTGATGAGTGGGCCTCAAGTCTTTTTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCAAATTGAATGCAGGAGATGGACTACAAACAAGAAGCACGGAATGGAGTCAAATTTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGTATGGTTCAATACAGGATGTTGTGGTTCCTGAAATGAATTTGGCACTGACAACCCGGAAAGTGCTCATTATGCAGTGGCTAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAAAAGCTGGCTGGGGTCAAGGATCTTTATTTGGTTGAG....................................................................................GTAGGGGTTTATTGCTCATTCAATCAACTTCTAGAGTATGGATTCTATCATGCAGATCCACATCCTGGAAACCTTCTTCGTACATATGACGGGAAACTAGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318260" ref_strand="+" ref_description="SGN-U318260        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxidoreductase family protein, similar to AX110P (Daucus carota) GI:285739; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain | chr4:6107147-6109111 REVERSE | Aliases: F17A8.20, F17A8_20(evalue: 2e-130, score=462) genbank/nr: gi|15233990|ref|NP_192705.1| AX110P -related protein [Arabidopsis thaliana] gi|7485600|pir||T04014 hypothetical protein F17A8.20 - Arabidopsis thaliana gi|4538897|emb|CAB39634.1| AX110P-like protein [Arabidopsis thaliana] gi|7267662|emb|CAB78090.1| AX110P-like protein [Arabidopsis thaliana] gi|21554042|gb|AAM63123.1| AX110P-like protein [Arabidopsis thaliana] gi|26983872|gb|AAN86188.1| putative AX110P protein [Arabidopsis thaliana](evalue: 1e-128, score=462)">
      <seq>tttctctaaaattcacatacttgaaaatttgattcgaaactattacgaatagccgtacttattaatttctttttcattatgtaaatctcgaaattgaaaagataggaggcatatcccaattagtagtagtatttattatattagtccattgtcttccattttccactacctcatcagtgagctttgtgccttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtatagtattcgggcaatcttgtggactaatgattatgaattgccaaaaacagtaacagctctgggtgatccagaatttaatgaagctggagttatcctatcttgtggcgcttctttgagttggaaagacggaagggtagcaactttttattgttcatttttagctaatatggccatggacatcgttgctattggatccaaaggaaatttgcgggtccatgactttgtaattccatttcaagaaaatgttgctccgttttacactgtggaaggttcgtgttttggtgaacttgctagatcaattcatcctgcacctagtgagcatcaagtcaatacagatcttcctcaagaggctctgatggtaacggagttttcaaacctggttggaagtatcaaaggggaaggttctaaacctgagaagaagtggccaacgattagtagaaagacacaacttgtggtggatgctgtcaaggcatcaattgagaaaggtttcgagcccgttgagatcatctattagttggtatttagctatctttcttgtgaaatctgaacgctatgtgttgttgtaactgaatgttgtatttctgaataaggcttgtaagcttctgtttgttgacaatgtgtatgtaatataggtgtttggaaatgaattggccgagctagtttgaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66489" stop="69266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66789" g_stop="67487" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68973" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="1482" r_length="783" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-U318260" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66789" e_stop="67487"/>
          <exon e_start="68191" e_stop="68973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCAT</genome_strand>
        <mrna_strand>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qH6qVE/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325739" ref_strand="+" ref_description="SGN-U325739        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | 17.6 kDa class I heat shock protein (HSP17.6A-CI), similar to 17.5 kDa class I heat shock protein SP:P04793 from (Glycine max) | chr1:22035078-22035796 FORWARD | Aliases: F23H11.18, F23H11_18(evalue: 3e-32, score=135) genbank/nr: gi|4838149|gb|AAD30865.1| seed maturation protein PM31 [Glycine max](evalue: 2e-37, score=158)">
      <seq>aatcggccgaattgagctgtatttatttcttggaagcaagaaataaaatgaattgaagtggaaaaataagaaaaatttgttatttgaagaaaaaaaatattaatatggcatcatcaataggaccatggttgggtggtggtggacgaagtaaagatatggattttgtaagcccattttcatctgatgtattgggcctgggctttggtggtgaattgggctttggtaatggattgggctttaggaatgatgaaatttctgctttggcccatgctagtgtcgactggcgtgaaactgatcaagctcatgtttttcttgttgatattcctggtgtgaagaaggaagatttaaaggttcagctcgaagataacatattggagattagcggtgaaagagtaaaagaggaagaaaaaggcgatgacaagtggcaccgcgtggagcgtaaacgtggcagtttctgcagaaaattccggctaccggaaaatgccaacgtggaaggtataagttgtgggcttgaaaacggagttttaacagtgaatgtacccaaaaaagaaacacagcaggttccaaaaaatgttaaggctataaacataacttagtttttgcgcctgtgaatatagtatgtgtgtattaaggcttttaaataagtggatcacttgtatgtacaaattaaaaatatcaaatagtattttttacattttgtgtgattatttaatggccaattgtgtccatatggtctttactaatatttacttttaaaagaataattcttgaatttaaaaaanaaaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-DBDfb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="75184" stop="72808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74877" g_stop="74567" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="327" r_length="311" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73557" g_stop="73109" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="776" r_length="449" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="787"/>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-U325739" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74877" e_stop="74567"/>
          <exon e_start="73557" e_stop="73109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATTTATTTCTTGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTGGTTAACCATCTAATCCCTTCTATAACTTTTTTTTTTTTTAATGATATAATTGCGTTTTATAGTTATAATTTTAATAATCGTGTTTATAGTTAATAGTTTTGTTTCTTACGATAGGTTGTGATTTATATATTTCTATTTTGTTTAGAAATTTTTAAATTATCGTTTGTATATTTCTTTTGTCAATATATAAATTAGGTAGTTCATTTATTTAAAAAAAAATAAAAGCCTGATTTTGTTTCAAAACAATGACTTTTTTGGTAACTTTTCACGTAGAAATTTAGAATTTTTTCAAATTATCGTTTGTTATATTTCTGTTTTTGTCAATAGATAAATTAGGTAGTTCATTCATTTAAAAAAAAACTAGTTCTGTTTCAAAACAATGATTTTTTTACAAACATTTTAATTTTAATTTTTTATTTGACATATTTAAAACATTAAAGGACATTTTGGTATATTTAATATACTTTTAATTTTTCTTTTTAACTTCGTTTTTAATTAGGATTTTTTTAAAAAAATAGAGGGAGTATGATTTTTTTTTTAAAATAGAGGGAGTATGATTTTCCATAAATCATATACAAATATTTCATATAAAATTTTTGAATTTTTATATCATCAGGATTTGAATTACACAATTACAAAAAATTTTGGATTTATATAAGGATTTGAATGATATAAATTTTATATTTATACAAATCTTGAGAATCTCAAGAATTGAGAAACTTTTAGTTAAGAGGAATATAGAAAAAATTTACGTGTATTAATTTAATTTTCATTATTATATAATTTTAATGAAGTAAAAACACATTTTAATTAAAGTTTAAATTATAAATAGAAAAAAATTACTGTAGTAATTCAATTTTCATTATTATATAATTTTAATAAAATAAAATACATTTTAATTAACGTTTAAACATACGACATGTGTGTATTTGAATTAGATTGCATGTATTAGATTGGTGTAAATTTTCGGATCCATAACAAGTGGATTGGATTTTGAAATGGTACATAGGTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTAATGGCCAATTGTGTCCATATGGTCTTTACTAATATTTACTTTTAAAAGAATAATTCTTGAATTTC</genome_strand>
        <mrna_strand>CTGTATTTATTTCTTGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAAAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTAATGGCCAATTGTGTCCATATGGTCTTTACTAATATTTACTTTTAAAAGAATAATTCTTGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6967" PGL_stop="4498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6967" e_stop="6937"/>
            <exon e_start="5728" e_stop="5542"/>
            <exon e_start="5450" e_stop="5291"/>
            <exon e_start="5210" e_stop="5173"/>
            <exon e_start="5077" e_stop="5026"/>
            <exon e_start="4904" e_stop="4498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.671" e_score="1.000"/>
          <exon-intron don_prob="0.056" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6967" e_stop="6937" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6936" i_stop="5729" i_length="1208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5728" e_stop="5542" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.671">
            <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5450" e_stop="5291" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.056" acc_prob="0.970">
            <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5210" e_stop="5173" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5077" e_stop="5026" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="4904" e_stop="4498" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6967" stop="6937"/>
              <exon start="5728" stop="5542"/>
              <exon start="5450" stop="5291"/>
              <exon start="5210" stop="5173"/>
              <exon start="5077" stop="5026"/>
              <exon start="4904" stop="4498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCCCGTCTGTGTATTATAAAATAATGAG : CCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGAT : GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAAC : CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCG : AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGG : GCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATGATATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATGTTGTATAATCGT</gDNA_template>
            <first_frame> F  S  R  L  C  I  I  K  *  *   : A  D  I  L  L  S  S  G  L  R  G  L  T  S  C  L  L  R  W  S  Y  Q  M  P  R  M  *  S  *  N  W  N  Q  K  E  N  S  Y  S  L  Q  L  Q  E  L  I  M  Y  L  M  K  W  I  L  I  C  L  I  K  L  M  L  M :   R  A  K  V  V  L  P  L  E  V  S  C  I  *  *  R  R  R  K  T  S  G  G  A  D  W  *  S  R  R  D  Y  V  R  C  F  *  K  L  I  G  T  N  G  L  M  K  M  K  K  T  V  N  :  L  S  Q  I  W  I  L  V  T  W  T  S  R :   N  S  I  W  E  K  V  L  A  I  L  M  L  M  C  L  R  :  A  M  M  T  V  T  L  K  K  L  R  K  K  R  T  L  N  P  R  Q  Q  C  L  Q  A  P  N  P  E  *  K  L  D  A  F  Q  C  L  *  H  *  K  L  F  N  C  L  L  E  F  E  C  G  T  F  F  *  Q  W  L  E  L  *  C  R  K  C  L  M  I  S  S  *  Y  I  *  R  I  *  K  G  W  C  P  H  *  T  L  L  S  C  T  A  H  Y  I  *  F  L  K  H  I  *  K  L  C  N  T  G  *  C  S  A  T  F  S  L  H  N  N  M  W  K  S  M  L  S  L  *  D  *  C  C  I  I   </first_frame>
            <second_frame>  F  P  V  C  V  L  *  N  N  E  :  P  T  S  Y  Y  Q  V  G  S  E  V  *  Q  V  V  Y  Y  G  G  V  T  R  C  Q  E  C  E  A  E  T  G  T  R  R  K  I  L  I  L  C  N  C  R  S  *  *  C  T  L  *  S  G  S  *  S  V  *  *  N  *  C  *   : *  E  Q  K  *  Y  Y  L  *  K  Y  R  V  S  S  E  E  G  G  R  Q  V  V  E  Q  T  G  K  A  G  G  I  T  S  G  V  F  E  S  *  L  G  Q  M  G  *  *  R  *  R  R  Q  *  T :   *  A  R  Y  G  F  W  *  H  G  L  L   : E  T  Q  Y  G  R  R  S  *  Q  F  *  C  *  C  A  *  G :   R  *  *  Q  *  H  *  R  N  *  G  R  R  E  L  *  T  Q  G  S  S  A  S  K  H  R  T  R  S  E  S  L  T  H  S  S  V  C  N  I  E  N  F  L  T  A  C  L  S  L  S  V  V  H  S  S  S  N  G  *  S  C  S  A  G  N  V  *  *  S  V  H  D  I  F  E  G  S  E  R  A  G  V  L  I  E  L  C  Y  H  V  L  H  I  T  Y  D  F  S  N  I  Y  K  N  Y  V  I  L  A  S  A  V  Q  R  S  V  C  T  I  T  C  G  N  P  C  Y  P  Y  K  I  D  V  V  *  S  </second_frame>
            <third_frame>   F  P  S  V  Y  Y  K  I  M  S :   R  H  P  T  I  K  W  A  Q  R  S  D  K  L  F  I  T  V  E  L  P  D  A  K  N  V  K  L  K  L  E  P  E  G  K  F  L  F  S  A  T  A  G  A  D  N  V  P  Y  E  V  D  L  D  L  F  D  K  I  N  V  D  :  E  S  K  S  S  T  T  S  R  S  I  V  Y  L  V  K  K  A  E  D  K  W  W  S  R  L  V  K  Q  E  G  L  R  P  V  F  L  K  V  D  W  D  K  W  V  D  E  D  E  E  D  S  K   : P  E  P  D  M  D  F  G  D  M  D  F  S  :  K  L  N  M  G  E  G  P  S  N  F  D  V  D  V  P  E   : G  D  D  D  S  D  T  E  E  I  E  E  E  E  N  S  E  P  K  A  A  V  P  P  S  T  E  P  G  V  K  A  *  R  I  P  V  F  V  T  L  K  T  F  *  L  L  A  *  V  *  V  W  Y  I  L  L  A  M  V  R  A  V  V  Q  E  M  F  D  D  Q  F  M  I  Y  L  K  D  L  K  G  L  V  S  S  L  N  F  V  I  M  Y  C  T  L  H  M  I  S  Q  T  Y  I  K  T  M  *  Y  W  L  V  Q  C  N  V  Q  F  A  Q  *  H  V  E  I  H  V  I  L  I  R  L  M  L  Y  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6965" stop="6937"/>
                    <exon start="5728" stop="5542"/>
                    <exon start="5450" stop="5291"/>
                    <exon start="5210" stop="5173"/>
                    <exon start="5077" stop="5026"/>
                    <exon start="4904" stop="4807"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPSVYYKIMSRHPTIKWAQRSDKLFITVELPDAKNVKLKLEPEGKFLFSATAGADNVPYEVDLDLFDKINVDESKSSTTSRSIVYLVKKAEDKWWSRLVKQEGLRPVFLKVDWDKWVDEDEEDSKPEPDMDFGDMDFSKLNMGEGPSNFDVDVPEGDDDSDTEEIEEEENSEPKAAVPPSTEPGVKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4696" stop="4502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVHDIFEGSERAGVLIELCYHVLHITYDFSNIYKNYVILASAVQRSVCTITCGNPCYPYKIDVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10060" PGL_stop="10281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10060" e_stop="10281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="10060" e_stop="10281" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10060" stop="10281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346348" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCGAAACCCCACAACTTCATACCCATGTGATTCGATTTGGGTTTGATGCAGATGTGTTGTTGCGGACTACTTTACTGGATGCGTACTCGAAATCTGGTGATTTGGATTATGCATACAAGGTGTTTGATGAAATGGGTGTTAGAGATATTGCGAGTTGGAATGCATTAATTGCTGGGTTAGCTCAAGGGAATCGACCCACGGAAGCTTTGTTGCTTTTTA</gDNA_template>
            <first_frame> V  P  K  P  H  N  F  I  P  M  *  F  D  L  G  L  M  Q  M  C  C  C  G  L  L  Y  W  M  R  T  R  N  L  V  I  W  I  M  H  T  R  C  L  M  K  W  V  L  E  I  L  R  V  G  M  H  *  L  L  G  *  L  K  G  I  D  P  R  K  L  C  C  F  L </first_frame>
            <second_frame>  F  R  N  P  T  T  S  Y  P  C  D  S  I  W  V  *  C  R  C  V  V  A  D  Y  F  T  G  C  V  L  E  I  W  *  F  G  L  C  I  Q  G  V  *  *  N  G  C  *  R  Y  C  E  L  E  C  I  N  C  W  V  S  S  R  E  S  T  H  G  S  F  V  A  F   </second_frame>
            <third_frame>   S  E  T  P  Q  L  H  T  H  V  I  R  F  G  F  D  A  D  V  L  L  R  T  T  L  L  D  A  Y  S  K  S  G  D  L  D  Y  A  Y  K  V  F  D  E  M  G  V  R  D  I  A  S  W  N  A  L  I  A  G  L  A  Q  G  N  R  P  T  E  A  L  L  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10062" stop="10280"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SETPQLHTHVIRFGFDADVLLRTTLLDAYSKSGDLDYAYKVFDEMGVRDIASWNALIAGLAQGNRPTEALLLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12682" PGL_stop="12018"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12682" e_stop="12018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="12682" e_stop="12018" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12682" stop="12018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAAACAGTTGATGATCATTGTGGACTTTGGCTGCCTGGTAATATCTTCCATTTGTTTTTCCATAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTCAATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATACAGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAGTTGGTTTTGATCATTAGTCTCTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGAGGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGCTGCAGAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATACATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCGAGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCAATCACCCTTGTGCTATTTTGTTTGAAGCCTTTGTGATAC</gDNA_template>
            <first_frame> V  K  T  V  D  D  H  C  G  L  W  L  P  G  N  I  F  H  L  F  F  H  N  N  T  A  Y  H  D  I  H  H  Q  L  Q  G  T  K  F  N  Y  S  Q  P  F  F  S  I  W  D  K  L  L  G  T  Y  R  P  Y  R  L  V  K  R  P  E  G  G  F  E  A  Q  L  M  K  D  *  L  V  L  I  I  S  L  C  M  K  S  T  C  L  L  *  G  *  L  P  S  *  G  C  S  L  *  Q  L  P  W  K  V  H  I  H  Q  D  L  K  V  C  C  R  I  R  N  V  H  S  F  L  F  S  *  P  C  L  F  V  I  F  V  *  P  L  D  D  L  *  A  Y  C  F  *  V  L  T  L  C  S  I  H  F  Q  L  L  Q  L  A  Q  T  L  A  G  *  F  C  I  A  F  Q  E  L  *  V  E  R  N  Q  D  H  V  I  T  I  V  Q  T  M  *  C  K  I  S  W  S  L  K  L  F  Q  S  P  L  C  Y  F  V  *  S  L  C  D   </first_frame>
            <second_frame>  S  K  Q  L  M  I  I  V  D  F  G  C  L  V  I  S  S  I  C  F  S  I  I  T  L  L  T  M  T  F  T  I  S  F  K  A  Q  S  S  I  I  L  S  H  S  F  P  F  G  T  N  F  L  E  H  T  G  H  T  D  L  *  K  G  L  R  V  V  S  R  H  N  *  *  K  I  S  W  F  *  S  L  V  S  V  *  N  Q  H  V  F  C  R  D  S  Y  Q  V  E  V  V  H  S  S  S  C  L  G  R  S  T  F  I  K  T  *  K  C  A  A  E  L  E  M  F  I  L  F  F  S  V  D  P  V  Y  S  *  F  L  S  N  L  L  T  I  C  K  P  I  V  S  E  F  L  L  C  A  V  Y  I  F  N  Y  C  N  L  L  R  L  *  Q  V  D  F  V  L  P  F  K  S  C  E  S  R  E  I  K  I  M  *  L  Q  L  F  K  L  C  S  V  K  F  H  G  H  *  S  Y  F  N  H  P  C  A  I  L  F  E  A  F  V  I  </second_frame>
            <third_frame>   Q  N  S  *  *  S  L  W  T  L  A  A  W  *  Y  L  P  F  V  F  P  *  *  H  C  L  P  *  H  S  P  S  A  S  R  H  K  V  Q  L  F  S  A  I  L  F  H  L  G  Q  T  S  W  N  I  Q  A  I  Q  T  C  K  K  A  *  G  W  F  R  G  T  T  D  E  R  L  V  G  F  D  H  *  S  L  Y  E  I  N  M  S  F  V  G  I  A  T  K  L  R  L  F  T  L  A  V  A  L  E  G  P  H  S  S  R  L  E  S  V  L  Q  N  *  K  C  S  F  F  S  F  Q  L  T  L  F  I  R  N  F  C  L  T  S  *  R  F  V  S  L  L  F  L  S  S  Y  F  V  Q  Y  T  F  S  T  I  A  T  C  S  D  F  S  R  L  I  L  Y  C  L  S  R  V  V  S  R  E  K  S  R  S  C  N  Y  N  C  S  N  Y  V  V  *  N  F  M  V  I  E  V  I  S  I  T  L  V  L  F  C  L  K  P  L  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12682" stop="12452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKTVDDHCGLWLPGNIFHLFFHNNTAYHDIHHQLQGTKFNYSQPFFSIWDKLLGTYRPYRLVKRPEGGFEAQLMKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19218" PGL_stop="12870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19218" e_stop="18562"/>
            <exon e_start="12994" e_stop="12870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.911" acc_prob="0.977" e_score="0.953"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="19218" e_stop="18562" e_length="657"/>
          </exon>
          <intron i_serial="1" don_prob="0.911" acc_prob="0.977">
            <gDNA_intron_boundary i_start="18561" i_stop="12995" i_length="5567"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="12994" e_stop="12870" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19218" stop="18562"/>
              <exon start="12994" stop="12870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19158" stop="18562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339367" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCCCTTTTCCTTTTCCAACGAATCTCTCAGAATCACAAATTCAAAAAAAAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG : TTAACTTGTAAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCA</gDNA_template>
            <first_frame> H  P  F  S  F  S  N  E  S  L  R  I  T  N  S  K  K  K  K  K  V  R  P  N  L  T  T  V  S  T  I  I  V  L  T  P  A  Q  L  S  C  *  Y  I  H  L  H  T  Y  A  P  D  L  F  S  Y  F  Q  *  L  F  L  *  D  L  P  K  S  P  P  V  I  S  M  L  C  W  G  *  R  F  D  L  L  F  K  N  L  F  G  F  S  F  S  W  I  L  V  S  M  L  *  C  A  C  C  M  *  I  L  S  W  E  F  H  N  L  E  C  W  I  E  G  K  G  I  R  E  R  G  *  L  F  F  F  F  *  K  G  G  L  K  M  V  F  W  E  G  Y  V  S  D  E  V  M  G  T  F  A  P  I  V  V  Y  W  L  Y  A  G  F  Y  Q  L  L  P  P  M  D  K  Y  R  L  H  T  R  K  E  E  N  A  K  N  L  V  P  L  A  S  V  V  K  G  V  L  L  Q  Q  F  F  Q  A  T  V  A  H  L  L  F  L  :  L  T  C  K  V  T  T  S  G  T  V  V  Q  P  S  I  P  V  Q  I  V  Q  I  I  I  A  M  L  V  M  D  T  W  Q  Y  F  V  H  R  Y  M   </first_frame>
            <second_frame>  I  P  F  P  F  P  T  N  L  S  E  S  Q  I  Q  K  K  K  K  K  L  G  R  I  S  Q  L  S  A  L  S  L  Y  *  P  Q  L  N  S  H  V  N  T  Y  I  Y  I  H  M  P  Q  I  C  S  H  I  S  N  N  C  F  S  K  I  C  Q  N  H  H  Q  *  F  Q  C  F  V  G  A  K  D  L  I  F  C  S  R  T  Y  L  G  F  H  F  L  G  F  L  F  Q  C  C  N  V  L  V  V  C  R  S  *  A  G  N  F  I  I  *  S  V  G  L  R  E  K  G  *  G  K  G  G  N  F  F  F  F  F  E  K  G  A  *  K  W  C  F  G  R  V  M  *  V  M  K  *  W  G  H  L  P  Q  *  W  C  I  G  C  M  Q  G  S  I  S  Y  C  L  P  W  I  N  I  V  F  I  L  G  K  R  K  M  P  R  T  *  F  H  W  L  L  L  L  K  G  F  F  F  S  S  F  F  R  Q  L  L  P  T  C  S  F  C :   *  L  V  R  *  L  H  Q  E  L  *  S  S  P  Q  F  L  F  R  L  C  R  S  L  L  R  C  W  S  W  T  H  G  S  T  L  C  I  A  T  C  </second_frame>
            <third_frame>   S  L  F  L  F  Q  R  I  S  Q  N  H  K  F  K  K  K  K  K  S  *  A  E  S  H  N  C  Q  H  Y  H  C  I  N  P  S  S  T  L  M  L  I  H  T  F  T  Y  I  C  P  R  S  V  L  I  F  P  I  I  V  S  L  R  F  A  K  I  T  T  S  N  F  N  A  L  L  G  L  K  I  *  S  F  V  Q  E  L  I  W  V  F  I  F  L  D  S  C  F  N  V  V  M  C  L  L  Y  V  D  L  E  L  G  I  S  *  F  R  V  L  D  *  G  K  R  D  K  G  K  G  V  T  F  F  F  F  L  K  R  G  L  K  N  G  V  L  G  G  L  C  E  *  *  S  D  G  D  I  C  P  N  S  G  V  L  V  V  C  R  V  L  S  A  I  A  S  H  G  *  I  S  S  S  Y  *  E  R  G  K  C  Q  E  L  S  S  T  G  F  C  C  *  R  G  S  S  S  A  V  F  S  G  N  C  C  P  L  A  L  F   : V  N  L  *  G  N  Y  I  R  N  C  S  P  A  L  N  S  C  S  D  C  A  D  H  Y  C  D  A  G  H  G  H  M  A  V  L  C  A  S  L  H  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18807" stop="18562"/>
                    <exon start="12994" stop="12872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGGLKMVFWEGYVSDEVMGTFAPIVVYWLYAGFYQLLPPMDKYRLHTRKEENAKNLVPLASVVKGVLLQQFFQATVAHLLFLLTCKVTTSGTVVQPSIPVQIVQIIIAMLVMDTWQYFVHRYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24429" PGL_stop="25143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24429" e_stop="25143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="24429" e_stop="25143" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24429" stop="25143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342473" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAACAACATAGAGTTGTTAATCATGTTGATGACAGCAACAGCACCTTGTTAGAACGCAGTGGAACTGCCAGCCAAATTTATGGTTATTCTCTGGCCCCGTCGGTATTGCATCAAACTGTTGCAGGCTCAATACATCAAAATGCTGTTGGCTCACTGGCAGGACCTGTGGGAGGTGTTGTGGCCATGGATGGAGCTGGAGCAGGTAATTTAGTGAAAGGAGGTTCATGTGTTGGAGTTCATGGAGGGACTCTAGTTGATCATACACCTAGTCAAATAGGAAGTCATACTGGTCAGTTATATGGACCCCCTGGTGATGCACACACCTATGCTTATAGGTCGCCATCCTACTTTGAAGCATCGGGCTCTATGGGGTTGCCAAACACCATGCCTGGTGATGCTTATAGGCCTCCACCATATTTGGAAGGCTCTATGGGGTTGCCAAACAACATACCGGGTGATGCTTATAGGCCAAACCAATACATGAAATGCTCCAACGGCTTGCAAAAAAACATATCTGGTGATGCTAATCAGCCTCCACCATACATGGAAGGCTCTGCACGGTTGCCAAACACCATACCTGCACCATATCAGTTTGCTGATTCTGTTCCATCTGCTGCCCTTGCTCATCCTTCACCCTCCTTGTACTGGAAGAGATAGTTTTGCATTGGGCAGGCATTATTTCTAACGTAGTTTCCCTTTTGTAGTATACCCAA</gDNA_template>
            <first_frame> H  N  N  I  E  L  L  I  M  L  M  T  A  T  A  P  C  *  N  A  V  E  L  P  A  K  F  M  V  I  L  W  P  R  R  Y  C  I  K  L  L  Q  A  Q  Y  I  K  M  L  L  A  H  W  Q  D  L  W  E  V  L  W  P  W  M  E  L  E  Q  V  I  *  *  K  E  V  H  V  L  E  F  M  E  G  L  *  L  I  I  H  L  V  K  *  E  V  I  L  V  S  Y  M  D  P  L  V  M  H  T  P  M  L  I  G  R  H  P  T  L  K  H  R  A  L  W  G  C  Q  T  P  C  L  V  M  L  I  G  L  H  H  I  W  K  A  L  W  G  C  Q  T  T  Y  R  V  M  L  I  G  Q  T  N  T  *  N  A  P  T  A  C  K  K  T  Y  L  V  M  L  I  S  L  H  H  T  W  K  A  L  H  G  C  Q  T  P  Y  L  H  H  I  S  L  L  I  L  F  H  L  L  P  L  L  I  L  H  P  P  C  T  G  R  D  S  F  A  L  G  R  H  Y  F  *  R  S  F  P  F  V  V  Y  P  </first_frame>
            <second_frame>  T  T  T  *  S  C  *  S  C  *  *  Q  Q  Q  H  L  V  R  T  Q  W  N  C  Q  P  N  L  W  L  F  S  G  P  V  G  I  A  S  N  C  C  R  L  N  T  S  K  C  C  W  L  T  G  R  T  C  G  R  C  C  G  H  G  W  S  W  S  R  *  F  S  E  R  R  F  M  C  W  S  S  W  R  D  S  S  *  S  Y  T  *  S  N  R  K  S  Y  W  S  V  I  W  T  P  W  *  C  T  H  L  C  L  *  V  A  I  L  L  *  S  I  G  L  Y  G  V  A  K  H  H  A  W  *  C  L  *  A  S  T  I  F  G  R  L  Y  G  V  A  K  Q  H  T  G  *  C  L  *  A  K  P  I  H  E  M  L  Q  R  L  A  K  K  H  I  W  *  C  *  S  A  S  T  I  H  G  R  L  C  T  V  A  K  H  H  T  C  T  I  S  V  C  *  F  C  S  I  C  C  P  C  S  S  F  T  L  L  V  L  E  E  I  V  L  H  W  A  G  I  I  S  N  V  V  S  L  L  *  Y  T  Q </second_frame>
            <third_frame>   Q  Q  H  R  V  V  N  H  V  D  D  S  N  S  T  L  L  E  R  S  G  T  A  S  Q  I  Y  G  Y  S  L  A  P  S  V  L  H  Q  T  V  A  G  S  I  H  Q  N  A  V  G  S  L  A  G  P  V  G  G  V  V  A  M  D  G  A  G  A  G  N  L  V  K  G  G  S  C  V  G  V  H  G  G  T  L  V  D  H  T  P  S  Q  I  G  S  H  T  G  Q  L  Y  G  P  P  G  D  A  H  T  Y  A  Y  R  S  P  S  Y  F  E  A  S  G  S  M  G  L  P  N  T  M  P  G  D  A  Y  R  P  P  P  Y  L  E  G  S  M  G  L  P  N  N  I  P  G  D  A  Y  R  P  N  Q  Y  M  K  C  S  N  G  L  Q  K  N  I  S  G  D  A  N  Q  P  P  P  Y  M  E  G  S  A  R  L  P  N  T  I  P  A  P  Y  Q  F  A  D  S  V  P  S  A  A  L  A  H  P  S  P  S  L  Y  W  K  R  *  F  C  I  G  Q  A  L  F  L  T  *  F  P  F  C  S  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24431" stop="25087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQHRVVNHVDDSNSTLLERSGTASQIYGYSLAPSVLHQTVAGSIHQNAVGSLAGPVGGVVAMDGAGAGNLVKGGSCVGVHGGTLVDHTPSQIGSHTGQLYGPPGDAHTYAYRSPSYFEASGSMGLPNTMPGDAYRPPPYLEGSMGLPNNIPGDAYRPNQYMKCSNGLQKNISGDANQPPPYMEGSARLPNTIPAPYQFADSVPSAALAHPSPSLYWKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30879" PGL_stop="28675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30879" e_stop="30590"/>
            <exon e_start="28936" e_stop="28791"/>
            <exon e_start="28702" e_stop="28675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.356" acc_prob="0.992" e_score="0.973"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30879" e_stop="30590" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.944">
            <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="28936" e_stop="28791" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.356" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28702" e_stop="28675" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30879" stop="30590"/>
              <exon start="28936" stop="28791"/>
              <exon start="28702" stop="28675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333298" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAG : ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAA : TTATAACCGATGAGATCAATGATTTAGA</gDNA_template>
            <first_frame> T  G  G  R  S  S  I  F  L  *  T  P  L  I  I  L  L  F  K  L  L  H  S  E  G  E  K  S  P  K  L  W  S  G  E  V  E  N  G  G  W  V  E  *  R  G  C  R  E  A  D  L  L  Q  *  G  S  C  S  V  F  E  R  R  *  R  C  Q  L  L  E  S  V  *  R  A  I  *  C  P  S  I  T  L  P  I  *  V  P  G  S  S  E  F  H  S  R :   L  S  R  K  D  K  C  M  *  A  E  N  N  R  S  T  I  *  S  C  C  R  G  *  N  R  *  A  A  E  R  V  R  T  G  D  P  E  R  T  T  A  *  R  R  T  *  I   : I  I  T  D  E  I  N  D  L   </first_frame>
            <second_frame>  R  E  G  G  V  L  F  F  C  E  L  R  *  S  F  F  F  S  N  Y  Y  I  R  R  E  K  K  A  L  N  F  G  L  E  R  S  K  M  V  D  G  S  N  N  V  D  V  E  K  L  I  S  F  S  K  D  L  V  Q  F  L  K  E  D  K  D  V  S  F  L  N  Q  C  K  E  Q  F  N  A  L  Q  S  H  C  Q  S  E  Y  Q  A  L  Q  N  S  I  Q   : D  Y  Q  G  K  I  N  A  C  K  Q  R  T  T  E  A  Q  S  E  A  A  A  E  A  E  I  D  K  L  Q  K  E  L  E  Q  E  I  Q  R  E  Q  L  L  R  E  E  L  R  *  :  L  *  P  M  R  S  M  I  *  </second_frame>
            <third_frame>   G  R  E  E  F  Y  F  S  V  N  S  A  N  H  S  S  F  Q  I  T  T  F  G  G  R  K  K  P  *  T  L  V  W  R  G  R  K  W  W  M  G  R  I  T  W  M  *  R  S  *  S  P  S  V  R  I  L  F  S  F  *  K  K  I  K  M  S  A  S  *  I  S  V  K  S  N  L  M  P  F  N  H  T  A  N  L  S  T  R  L  F  R  I  P  F  K  :  I  I  K  E  R  *  M  H  V  S  R  E  Q  Q  K  H  N  L  K  L  L  Q  R  L  K  *  I  S  C  R  K  S  *  N  R  R  S  R  E  N  N  C  L  E  K  N  L  D  N :   Y  N  R  *  D  Q  *  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30839" stop="30590"/>
                    <exon start="28936" stop="28791"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFSNYYIRREKKALNFGLERSKMVDGSNNVDVEKLISFSKDLVQFLKEDKDVSFLNQCKEQFNALQSHCQSEYQALQNSIQDYQGKINACKQRTTEAQSEAAAEAEIDKLQKELEQEIQREQLLREELR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42106" PGL_stop="43753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42106" e_stop="42991"/>
            <exon e_start="43280" e_stop="43753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.850" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42106" e_stop="42991" e_length="886"/>
          </exon>
          <intron i_serial="1" don_prob="0.850" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42992" i_stop="43279" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="43280" e_stop="43753" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42106" stop="42991"/>
              <exon start="43280" stop="43753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGGGCCTGGCCCCAAGAATGGTGAGCAATATGGTGCACCTTTTAGAGAAGAGGACTGGCTTGATGATGAGCGCCTAAATGCCAAAGTCTCTGTACAGCCGGAGAGCCCGAGAGATCAGGAGAATACTGCAAAGAACATTAATGTAGTTCCTGATCCTGATGATGCAATTGAGGAATTGCTGAAGCGTCCTTTTACTGTAGATAACAATTTTGCATTGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAATCATCTTCAG : GTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAGGTGAGCATATATCTTACAAATAATTGGAGA</gDNA_template>
            <first_frame> S  G  P  G  P  K  N  G  E  Q  Y  G  A  P  F  R  E  E  D  W  L  D  D  E  R  L  N  A  K  V  S  V  Q  P  E  S  P  R  D  Q  E  N  T  A  K  N  I  N  V  V  P  D  P  D  D  A  I  E  E  L  L  K  R  P  F  T  V  D  N  N  F  A  L  E  Q  F  V  Q  E  E  D  T  E  S  T  L  L  N  Q  S  S  R  D  V  N  L  Y  N  H  C  A  V  A  G  P  S  C  Q  Q  Y  N  A  R  A  S  F  D  L  T  E  S  G  T  S  P  L  H  L  H  E  A  P  E  V  S  S  A  P  V  N  P  E  K  P  P  Y  A  V  E  E  D  F  L  E  D  F  L  E  M  D  D  L  L  V  V  D  P  N  V  Q  N  F  D  H  G  T  P  N  G  Q  V  F  D  K  P  A  G  N  L  E  T  L  Q  F  D  D  F  D  G  L  S  E  F  D  L  Y  H  D  A  P  S  L  L  D  N  V  G  T  P  V  V  G  Q  I  A  E  P  Y  M  N  N  F  V  N  G  I  T  Y  P  D  S  T  T  Y  M  S  A  F  Q  N  D  M  M  N  N  Q  Q  M  R  L  N  H  E  N  Q  I  N  N  Q  F  W  M  H  D  E  R  F  G  V  F  N  P  I  E  G  D  Q  S  V  V  D  Q  S  S  S   : G  V  V  N  D  N  N  M  A  N  Y  P  M  G  A  N  Q  N  L  A  K  K  D  D  G  T  Q  S  W  F  S  S  N  L  W  A  F  V  D  S  I  P  T  T  P  A  S  A  A  E  S  A  L  V  V  N  R  A  F  E  R  M  S  S  F  S  R  M  K  L  N  V  G  N  M  N  V  A  A  G  N  A  S  A  T  S  S  S  S  G  K  G  K  Y  G  L  C  C  I  S  L  L  G  V  L  C  A  F  L  W  V  V  I  G  T  S  A  K  I  A  G  T  *  M  I  F  S  *  T  C  A  E  F  S  F  A  I  Y  H  L  A  F  C  Q  N  Q  W  K  G  E  H  I  S  Y  K  *  L  E  </first_frame>
            <second_frame>  V  G  L  A  P  R  M  V  S  N  M  V  H  L  L  E  K  R  T  G  L  M  M  S  A  *  M  P  K  S  L  Y  S  R  R  A  R  E  I  R  R  I  L  Q  R  T  L  M  *  F  L  I  L  M  M  Q  L  R  N  C  *  S  V  L  L  L  *  I  T  I  L  H  W  S  S  L  F  K  R  K  I  L  K  A  P  C  *  I  S  L  R  G  M  *  I  Y  T  I  I  V  L  S  L  G  Q  A  A  S  S  I  M  R  G  R  A  L  I  *  Q  S  Q  A  H  H  H  Y  I  C  M  R  H  Q  K  S  H  L  L  R  *  I  L  K  S  P  H  T  R  W  K  R  I  S  W  K  I  F  W  R  W  M  T  S  L  L  S  I  Q  M  F  K  T  L  I  T  E  P  Q  M  V  K  S  L  T  N  L  L  E  T  W  R  L  C  S  L  M  T  L  M  A  Y  Q  S  L  T  C  I  M  M  H  L  H  F  L  I  M  W  G  H  Q  *  W  G  K  L  L  N  H  T  *  T  T  L  *  T  E  L  H  I  L  T  Q  L  H  T  *  A  L  S  K  M  T  *  *  T  T  S  R  C  A  *  I  M  K  I  R  *  T  I  N  F  G  C  M  M  K  D  S  A  S  S  T  P  L  K  E  I  N  Q  L  L  I  N  H  L  Q  :  V  W  *  M  I  I  I  W  Q  I  I  L  W  A  L  I  K  I  *  P  K  R  M  M  V  R  S  R  G  S  P  L  I  C  G  L  S  W  I  L  Y  P  Q  L  L  L  Q  L  L  K  V  L  L  *  L  T  G  P  L  S  V  C  L  A  L  V  E  *  N  *  M  S  G  T  *  M  L  L  Q  V  M  P  L  Q  L  Q  V  V  L  A  K  A  N  M  D  Y  V  V  F  L  Y  L  E  Y  F  V  H  S  C  G  W  *  *  E  L  L  L  K  S  R  G  H  R  *  Y  S  H  K  H  V  Q  S  F  L  L  L  F  I  I  W  L  F  A  R  I  N  G  K  V  S  I  Y  L  T  N  N  W  R </second_frame>
            <third_frame>   W  A  W  P  Q  E  W  *  A  I  W  C  T  F  *  R  R  G  L  A  *  *  *  A  P  K  C  Q  S  L  C  T  A  G  E  P  E  R  S  G  E  Y  C  K  E  H  *  C  S  S  *  S  *  *  C  N  *  G  I  A  E  A  S  F  Y  C  R  *  Q  F  C  I  G  A  V  C  S  R  G  R  Y  *  K  H  L  A  K  S  V  F  E  G  C  E  F  I  Q  S  L  C  C  R  W  A  K  L  P  A  V  *  C  E  G  E  L  *  S  D  R  V  R  H  I  T  I  T  F  A  *  G  T  R  S  L  I  C  S  G  E  S  *  K  A  P  I  R  G  G  R  G  F  L  G  R  F  F  G  D  G  *  P  P  C  C  R  S  K  C  S  K  L  *  S  R  N  P  K  W  S  S  L  *  Q  T  C  W  K  P  G  D  S  A  V  *  *  L  *  W  L  I  R  V  *  P  V  S  *  C  T  F  T  S  *  *  C  G  D  T  S  S  G  A  N  C  *  T  I  H  E  Q  L  C  E  R  N  Y  I  S  *  L  N  Y  I  H  E  R  F  P  K  *  H  D  E  Q  P  A  D  A  L  E  S  *  K  S  D  K  Q  S  I  L  D  A  *  *  K  I  R  R  L  Q  P  H  *  R  R  S  I  S  C  *  S  I  I  F  R :   C  G  K  *  *  *  Y  G  K  L  S  Y  G  R  *  S  K  S  S  Q  K  G  *  W  Y  A  V  V  V  L  L  *  F  V  G  F  R  G  F  Y  T  H  N  S  C  F  S  C  *  K  C  S  C  S  *  Q  G  L  *  A  Y  V  *  L  *  *  N  E  I  K  C  R  E  H  E  C  C  C  R  *  C  L  C  N  F  K  *  F  W  Q  R  Q  I  W  I  M  L  Y  F  F  T  W  S  T  L  C  I  L  V  G  G  N  R  N  F  C  *  N  R  G  D  I  D  D  I  L  I  N  M  C  R  V  F  F  C  Y  L  S  S  G  F  L  P  E  S  M  E  R  *  A  Y  I  L  Q  I  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42106" stop="42991"/>
                    <exon start="43280" stop="43647"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGPGPKNGEQYGAPFREEDWLDDERLNAKVSVQPESPRDQENTAKNINVVPDPDDAIEELLKRPFTVDNNFALEQFVQEEDTESTLLNQSSRDVNLYNHCAVAGPSCQQYNARASFDLTESGTSPLHLHEAPEVSSAPVNPEKPPYAVEEDFLEDFLEMDDLLVVDPNVQNFDHGTPNGQVFDKPAGNLETLQFDDFDGLSEFDLYHDAPSLLDNVGTPVVGQIAEPYMNNFVNGITYPDSTTYMSAFQNDMMNNQQMRLNHENQINNQFWMHDERFGVFNPIEGDQSVVDQSSSGVVNDNNMANYPMGANQNLAKKDDGTQSWFSSNLWAFVDSIPTTPASAAESALVVNRAFERMSSFSRMKLNVGNMNVAAGNASATSSSSGKGKYGLCCISLLGVLCAFLWVVIGTSAKIAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="49468" PGL_stop="45085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49468" e_stop="49342"/>
            <exon e_start="48668" e_stop="48624"/>
            <exon e_start="48427" e_stop="48323"/>
            <exon e_start="48207" e_stop="48166"/>
            <exon e_start="47447" e_stop="47268"/>
            <exon e_start="46320" e_stop="46207"/>
            <exon e_start="45778" e_stop="45085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.223" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.858" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49468" e_stop="49342" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49341" i_stop="48669" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48668" e_stop="48624" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.223">
            <gDNA_intron_boundary i_start="48623" i_stop="48428" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48427" e_stop="48323" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.841" acc_prob="0.924">
            <gDNA_intron_boundary i_start="48322" i_stop="48208" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48207" e_stop="48166" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48165" i_stop="47448" i_length="718"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47447" e_stop="47268" e_length="180"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.939">
            <gDNA_intron_boundary i_start="47267" i_stop="46321" i_length="947"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46320" e_stop="46207" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.858">
            <gDNA_intron_boundary i_start="46206" i_stop="45779" i_length="428"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="45778" e_stop="45085" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49468" stop="49342"/>
              <exon start="48668" stop="48624"/>
              <exon start="48427" stop="48323"/>
              <exon start="48207" stop="48166"/>
              <exon start="47447" stop="47268"/>
              <exon start="46320" stop="46207"/>
              <exon start="45778" stop="45085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGCATTGCTATTGGCATCAACCCAGAATACAAAGTCCTGGGTAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGATAGCTCACCGAAACTAAAAGCTTCTTTAAGAGCACTTCTTTATAAG : GATGGTCAGTTCAGGATTGATCGACTAGAGTCTCTCTTATCAGAG : TCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAGAATCAAAATGGTGGGATTGATTCGAAGGTCATTATCAAGCAAATTCTTTCTTTTACACTGGATGATAAG : GGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAG : GGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATG : AAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAG : CTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGACTTTAGAACTAGCTGAAATGTGCCATTTGTGCCTGGCTGGAGAAGGGAAGAGACCGCCTTCCCCAAGGAATATAGCGTTGGACTGGCTGATTATTTTGCTCGATGATGCATACACTGAGACCGACGGCGTTGGCCAGACTTCTATTACAGAGTGTTTATGTTGACAGAAATGGCATTTGTCTTTCTTTTTAGTTTATTCACAAGAACCATACATACACATTATGATCCCATCGGTGCAGTCTGAGAAAGAGGTAAAATGTAAACAGACCTTACTCTATCTTTG</gDNA_template>
            <first_frame> G  H  C  Y  W  H  Q  P  R  I  Q  S  P  G  *  Y  I  P  M  D  C  *  K  S  T  N  *  *  L  T  E  T  K  S  F  F  K  S  T  S  L  *   : G  W  S  V  Q  D  *  S  T  R  V  S  L  I  R   : V  S  P  C  Q  D  R  K  N  P  D  R  E  S  K  W  W  D  *  F  E  G  H  Y  Q  A  N  S  F  F  Y  T  G  *  *   : G  C  L  Y  Q  G  N  S  T  *  G  I  F  *   : G  Y  G  C  T  W  C  C  N  C  R  F  S  N  K  C  S  C  N  Y  I  T  V  L  S  I  P  T  I  F  N  D  *  *  R  Y  Y  *  S  *  K  F  A  T  S  I  T  V  D  I  R  T  P  R  K  *  E  P  Q  H   : E  G  *  W  S  *  N  I  Q  Q  A  D  D  I  F  K  R  S  T  S  S  A  I  *  S  C  P  R  I  S  T  P  P  F  S  F  T  *   : A  S  T  R  D  A  T  T  V  T  S  L  A  C  *  F  R  W  K  A  G  F  P  S  R  C  K  D  V  K  E  G  I  L  V  K  Y  F  S  L  S  W  K  K  Q  D  I  L  Y  W  Y  S  S  Q  N  I  L  V  C  G  F  S  N  Y  Q  S  S  L  P  V  L  T  P  K  *  R  D  L  G  R  F  Y  L  K  R  Q  R  R  S  V  L  E  T  M  H  L  Q  E  I  Q  K  S  R  N  I  Y  R  L  Y  E  I  *  Y  I  *  R  Q  N  V  V  I  L  L  L  Q  Y  T  T  *  K  K  K  F  L  Y  H  *  T  L  E  L  A  E  M  C  H  L  C  L  A  G  E  G  K  R  P  P  S  P  R  N  I  A  L  D  W  L  I  I  L  L  D  D  A  Y  T  E  T  D  G  V  G  Q  T  S  I  T  E  C  L  C  *  Q  K  W  H  L  S  F  F  L  V  Y  S  Q  E  P  Y  I  H  I  M  I  P  S  V  Q  S  E  K  E  V  K  C  K  Q  T  L  L  Y  L   </first_frame>
            <second_frame>  G  I  A  I  G  I  N  P  E  Y  K  V  L  G  S  T  Y  P  W  I  A  R  K  V  L  T  D  S  S  P  K  L  K  A  S  L  R  A  L  L  Y  K  :  D  G  Q  F  R  I  D  R  L  E  S  L  L  S  E  :  S  L  R  A  K  T  E  R  T  L  I  E  N  Q  N  G  G  I  D  S  K  V  I  I  K  Q  I  L  S  F  T  L  D  D  K  :  G  A  F  I  R  E  I  L  L  E  E  F  S  K  :  G  M  V  A  L  G  V  A  T  V  D  S  V  T  N  A  V  A  T  T  L  P  F  S  P  S  Q  P  S  S  M  T  D  E  D  I  T  N  L  R  N  L  Q  R  L  L  L  L  I  S  G  L  Q  E  N  E  N  P  S  M  :  K  V  N  G  V  R  T  S  N  K  Q  M  I  F  L  N  G  A  P  L  Q  Q  F  E  A  V  Q  E  Y  L  P  L  L  S  V  L  P  E  :  L  P  Q  E  M  Q  Q  Q  L  L  R  L  P  A  D  F  A  G  K  L  A  S  R  V  A  A  R  T  L  K  R  V  F  L  *  N  I  S  A  Y  H  G  K  S  K  I  F  Y  I  G  T  P  H  R  T  F  W  F  V  D  F  P  I  I  N  Q  A  C  Q  S  *  L  L  N  E  E  I  L  V  D  F  I  L  K  G  R  E  D  Q  F  L  K  L  C  I  C  K  K  Y  R  S  L  E  I  Y  I  G  C  T  K  Y  S  I  Y  E  G  K  M  L  *  F  S  Y  Y  N  T  L  L  K  K  K  N  S  C  T  I  R  L  *  N  *  L  K  C  A  I  C  A  W  L  E  K  G  R  D  R  L  P  Q  G  I  *  R  W  T  G  *  L  F  C  S  M  M  H  T  L  R  P  T  A  L  A  R  L  L  L  Q  S  V  Y  V  D  R  N  G  I  C  L  S  F  *  F  I  H  K  N  H  T  Y  T  L  *  S  H  R  C  S  L  R  K  R  *  N  V  N  R  P  Y  S  I  F  </second_frame>
            <third_frame>   A  L  L  L  A  S  T  Q  N  T  K  S  W  V  V  H  T  H  G  L  L  E  K  Y  *  L  I  A  H  R  N  *  K  L  L  *  E  H  F  F  I  R :   M  V  S  S  G  L  I  D  *  S  L  S  Y  Q  S :   L  S  V  P  R  Q  K  E  P  *  *  R  I  K  M  V  G  L  I  R  R  S  L  S  S  K  F  F  L  L  H  W  M  I  R :   V  P  L  S  G  K  F  Y  L  R  N  F  L  R :   V  W  L  H  L  V  L  Q  L  S  I  Q  *  Q  M  Q  L  Q  L  H  Y  R  S  L  H  P  N  H  L  Q  *  L  M  K  I  L  L  I  L  E  I  C  N  V  Y  Y  C  *  Y  Q  D  S  K  K  M  R  T  P  A  * :   R  L  M  E  L  E  H  P  T  S  R  *  Y  F  *  T  E  H  L  F  S  N  L  K  L  S  K  N  I  Y  P  S  F  Q  F  Y  L  S :   F  H  K  R  C  N  N  S  Y  F  A  C  L  L  I  S  L  E  S  W  L  P  E  S  L  Q  G  R  *  R  G  Y  S  C  E  I  F  Q  L  I  M  E  K  A  R  Y  S  I  L  V  L  L  T  E  H  F  G  L  W  I  F  Q  L  S  I  K  L  A  S  P  N  S  *  M  K  R  S  W  S  I  L  S  *  K  A  E  K  I  S  S  *  N  Y  A  F  A  R  N  T  E  V  *  K  Y  I  *  V  V  R  N  I  V  Y  M  K  A  K  C  C  N  S  P  I  T  I  H  Y  L  K  K  K  I  L  V  P  L  D  F  R  T  S  *  N  V  P  F  V  P  G  W  R  R  E  E  T  A  F  P  K  E  Y  S  V  G  L  A  D  Y  F  A  R  *  C  I  H  *  D  R  R  R  W  P  D  F  Y  Y  R  V  F  M  L  T  E  M  A  F  V  F  L  F  S  L  F  T  R  T  I  H  T  H  Y  D  P  I  G  A  V  *  E  R  G  K  M  *  T  D  L  T  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49467" stop="49342"/>
                    <exon start="48668" stop="48624"/>
                    <exon start="48427" stop="48323"/>
                    <exon start="48207" stop="48166"/>
                    <exon start="47447" stop="47268"/>
                    <exon start="46320" stop="46207"/>
                    <exon start="45778" stop="45674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIAIGINPEYKVLGSTYPWIARKVLTDSSPKLKASLRALLYKDGQFRIDRLESLLSESLRAKTERTLIENQNGGIDSKVIIKQILSFTLDDKGAFIREILLEEFSKGMVALGVATVDSVTNAVATTLPFSPSQPSSMTDEDITNLRNLQRLLLLISGLQENENPSMKVNGVRTSNKQMIFLNGAPLQQFEAVQEYLPLLSVLPELPQEMQQQLLRLPADFAGKLASRVAARTLKRVFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="56290" PGL_stop="52492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56290" e_stop="56265"/>
            <exon e_start="56155" e_stop="56003"/>
            <exon e_start="55829" e_stop="55794"/>
            <exon e_start="54947" e_stop="54885"/>
            <exon e_start="53572" e_stop="53482"/>
            <exon e_start="52722" e_stop="52681"/>
            <exon e_start="52596" e_stop="52492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.038" e_score="0.962"/>
          <exon-intron don_prob="0.830" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="56290" e_stop="56265" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.038">
            <gDNA_intron_boundary i_start="56264" i_stop="56156" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56155" e_stop="56003" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.830" acc_prob="0.933">
            <gDNA_intron_boundary i_start="56002" i_stop="55830" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55829" e_stop="55794" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55793" i_stop="54948" i_length="846"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54947" e_stop="54885" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54884" i_stop="53573" i_length="1312"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53572" e_stop="53482" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="53481" i_stop="52723" i_length="759"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52722" e_stop="52681" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.938">
            <gDNA_intron_boundary i_start="52680" i_stop="52597" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52596" e_stop="52492" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56290" stop="56265"/>
              <exon start="56155" stop="56003"/>
              <exon start="55829" stop="55794"/>
              <exon start="54947" stop="54885"/>
              <exon start="53572" stop="53482"/>
              <exon start="52722" stop="52681"/>
              <exon start="52596" stop="52492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTCGCAGCAGCATCACTTGGACAG : GTCTATCAAGCTAGGCTTCGTTCTACCAGGGAAGTTGTTGCTGTGAAGGTGCAGAGACCTGGAGTTCAAAGTGCAATCTCCTTGGACATATTGATTTTACGATATCTCGCAGGCTTAATAAAGAAGGCAGGAAAACTTAATACCGACCTTCAG : GCAGTTGTTGATGAGTGGGCCTCAAGTCTTTTTCGG : GTGGTCAAATTGAATGCAGGAGATGGACTACAAACAAGAAGCACGGAATGGAGTCAAATTTCG : GCAATTGTATGGTTCAATACAGGATGTTGTGGTTCCTGAAATGAATTTGGCACTGACAACCCGGAAAGTGCTCATTATGCAGTGGCTAGAG : GGGCAAAAGCTGGCTGGGGTCAAGGATCTTTATTTGGTTGAG : GTAGGGGTTTATTGCTCATTCAATCAACTTCTAGAGTATGGATTCTATCATGCAGATCCACATCCTGGAAACCTTCTTCGTACATATGACGGGAAACTAGCCTAC</gDNA_template>
            <first_frame> L  S  Q  Q  H  H  L  D  R :   S  I  K  L  G  F  V  L  P  G  K  L  L  L  *  R  C  R  D  L  E  F  K  V  Q  S  P  W  T  Y  *  F  Y  D  I  S  Q  A  *  *  R  R  Q  E  N  L  I  P  T  F  R :   Q  L  L  M  S  G  P  Q  V  F  F  G :   W  S  N  *  M  Q  E  M  D  Y  K  Q  E  A  R  N  G  V  K  F  R :   Q  L  Y  G  S  I  Q  D  V  V  V  P  E  M  N  L  A  L  T  T  R  K  V  L  I  M  Q  W  L  E  :  G  Q  K  L  A  G  V  K  D  L  Y  L  V  E  :  V  G  V  Y  C  S  F  N  Q  L  L  E  Y  G  F  Y  H  A  D  P  H  P  G  N  L  L  R  T  Y  D  G  K  L  A  Y </first_frame>
            <second_frame>  C  R  S  S  I  T  W  T   : G  L  S  S  *  A  S  F  Y  Q  G  S  C  C  C  E  G  A  E  T  W  S  S  K  C  N  L  L  G  H  I  D  F  T  I  S  R  R  L  N  K  E  G  R  K  T  *  Y  R  P  S   : G  S  C  *  *  V  G  L  K  S  F  S   : G  G  Q  I  E  C  R  R  W  T  T  N  K  K  H  G  M  E  S  N  F   : G  N  C  M  V  Q  Y  R  M  L  W  F  L  K  *  I  W  H  *  Q  P  G  K  C  S  L  C  S  G  *  R :   G  K  S  W  L  G  S  R  I  F  I  W  L  R :   *  G  F  I  A  H  S  I  N  F  *  S  M  D  S  I  M  Q  I  H  I  L  E  T  F  F  V  H  M  T  G  N  *  P   </second_frame>
            <third_frame>   V  A  A  A  S  L  G  Q  :  V  Y  Q  A  R  L  R  S  T  R  E  V  V  A  V  K  V  Q  R  P  G  V  Q  S  A  I  S  L  D  I  L  I  L  R  Y  L  A  G  L  I  K  K  A  G  K  L  N  T  D  L  Q  :  A  V  V  D  E  W  A  S  S  L  F  R  :  V  V  K  L  N  A  G  D  G  L  Q  T  R  S  T  E  W  S  Q  I  S  :  A  I  V  W  F  N  T  G  C  C  G  S  *  N  E  F  G  T  D  N  P  E  S  A  H  Y  A  V  A  R   : G  A  K  A  G  W  G  Q  G  S  L  F  G  *   : G  R  G  L  L  L  I  Q  S  T  S  R  V  W  I  L  S  C  R  S  T  S  W  K  P  S  S  Y  I  *  R  E  T  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56288" stop="56265"/>
                    <exon start="56155" stop="56003"/>
                    <exon start="55829" stop="55794"/>
                    <exon start="54947" stop="54885"/>
                    <exon start="53572" stop="53534"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAAASLGQVYQARLRSTREVVAVKVQRPGVQSAISLDILILRYLAGLIKKAGKLNTDLQAVVDEWASSLFRVVKLNAGDGLQTRSTEWSQISAIVWFNTGCCGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54934" stop="54885"/>
                    <exon start="53572" stop="53482"/>
                    <exon start="52722" stop="52681"/>
                    <exon start="52596" stop="52492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQEMDYKQEARNGVKFRQLYGSIQDVVVPEMNLALTTRKVLIMQWLEGQKLAGVKDLYLVEVGVYCSFNQLLEYGFYHADPHPGNLLRTYDGKLAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66789" PGL_stop="68973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66789" e_stop="67487"/>
            <exon e_start="68191" e_stop="68973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66789" e_stop="67487" e_length="699"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="68191" e_stop="68973" e_length="783"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66789" stop="67487"/>
              <exon start="68191" stop="68973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG : ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCAT</gDNA_template>
            <first_frame> F  L  *  N  S  H  T  *  K  F  D  S  K  L  L  R  I  A  V  L  I  N  F  F  F  I  M  *  I  S  K  L  K  R  *  E  A  Y  P  N  *  *  *  Y  L  L  Y  *  S  I  V  F  H  F  P  L  P  H  Q  *  A  L  C  L  E  S  S  I  F  K  F  P  I  *  E  K  T  I  M  A  E  S  S  P  V  R  F  G  I  L  G  C  A  N  I  A  R  K  V  S  R  A  I  A  L  S  P  N  A  T  I  S  A  V  G  S  R  S  I  E  K  A  T  A  Y  A  K  E  N  G  Y  P  S  T  T  K  I  Y  G  S  Y  E  A  V  L  D  D  P  E  V  D  A  V  Y  V  P  L  P  T  S  L  H  V  K  W  A  V  L  A  A  Q  K  K  K  H  V  L  L  E  K  P  V  A  L  N  V  K  E  L  D  M  I  L  E  G  C  E  S  N  G  V  Q  Y  M  D  A  T  M  W  M  H  H  P  R  T  A  K  M  K  E  F  L  S  D  S  Q  R  F  G  Q  L  K  S  :  I  H  S  T  F  S  Y  L  G  D  A  E  F  L  E  N  D  I  R  V  K  S  D  L  D  A  L  G  A  L  G  D  A  G  W  Y  S  I  R  A  I  L  W  T  N  D  Y  E  L  P  K  T  V  T  A  L  G  D  P  E  F  N  E  A  G  V  I  L  S  C  G  A  S  L  S  W  K  D  G  R  V  A  T  F  Y  C  S  F  L  A  N  M  A  M  D  I  V  A  I  G  S  K  G  N  L  R  V  H  D  F  V  I  P  F  Q  E  N  V  A  P  F  Y  T  V  E  G  S  C  F  G  E  L  A  R  S  I  H  P  A  P  S  E  H  Q  V  N  T  D  L  P  Q  E  A  L  M  V  T  E  F  S  N  L  V  G  S  I  K  G  E  G  S  K  P  E  K  K  W  P  T  I  S  R  K  T  Q  L  V  V  D  A  V  K  A  S  I  E  K  G  F  E  P  V  E  I  I  Y  *  L  V  F  S  Y  L  S  C  E  I  *  T  L  C  V  V  V  T  E  C  C  I  S  E  *  G  L  *  A  S  V  C  *  Q  C  V  C  N  I  G  V  W  K  *  I  G  R  A  S  L  N  N  L  H </first_frame>
            <second_frame>  F  S  K  I  H  I  L  E  N  L  I  R  N  Y  Y  E  *  P  Y  L  L  I  S  F  S  L  C  K  S  R  N  *  K  D  R  R  H  I  P  I  S  S  S  I  Y  Y  I  S  P  L  S  S  I  F  H  Y  L  I  S  E  L  C  A  L  R  V  P  F  S  S  S  Q  S  K  K  K  Q  *  W  Q  N  R  R  R  Y  V  L  V  F  *  V  V  L  T  L  L  V  K  Y  H  A  P  S  H  F  L  Q  T  P  L  S  P  P  S  A  A  V  R  S  K  K  R  R  R  T  P  R  K  T  V  I  R  Q  R  R  R  F  T  A  V  M  R  R  F  W  M  I  R  K  W  M  P  F  M  F  L  F  R  R  A  C  M  *  S  G  P  C  W  Q  P  R  R  R  N  M  F  C  W  K  S  L  L  R  *  T  *  R  S  W  I  *  Y  W  R  G  V  N  R  M  G  C  S  T  W  M  L  L  C  G  C  I  I  R  V  L  L  R  *  K  S  S  S  L  I  L  S  V  L  D  N  S  N  R :   Y  I  A  R  F  L  I  L  V  T  R  S  F  L  R  M  T  F  A  *  S  P  I  L  M  L  L  V  L  *  V  M  L  V  G  I  V  F  G  Q  S  C  G  L  M  I  M  N  C  Q  K  Q  *  Q  L  W  V  I  Q  N  L  M  K  L  E  L  S  Y  L  V  A  L  L  *  V  G  K  T  E  G  *  Q  L  F  I  V  H  F  *  L  I  W  P  W  T  S  L  L  L  D  P  K  E  I  C  G  S  M  T  L  *  F  H  F  K  K  M  L  L  R  F  T  L  W  K  V  R  V  L  V  N  L  L  D  Q  F  I  L  H  L  V  S  I  K  S  I  Q  I  F  L  K  R  L  *  W  *  R  S  F  Q  T  W  L  E  V  S  K  G  K  V  L  N  L  R  R  S  G  Q  R  L  V  E  R  H  N  L  W  W  M  L  S  R  H  Q  L  R  K  V  S  S  P  L  R  S  S  I  S  W  Y  L  A  I  F  L  V  K  S  E  R  Y  V  L  L  *  L  N  V  V  F  L  N  K  A  C  K  L  L  F  V  D  N  V  Y  V  I  *  V  F  G  N  E  L  A  E  L  V  *  T  T  C   </second_frame>
            <third_frame>   S  L  K  F  T  Y  L  K  I  *  F  E  T  I  T  N  S  R  T  Y  *  F  L  F  H  Y  V  N  L  E  I  E  K  I  G  G  I  S  Q  L  V  V  V  F  I  I  L  V  H  C  L  P  F  S  T  T  S  S  V  S  F  V  P  *  E  F  H  F  Q  V  P  N  L  R  K  N  N  N  G  R  I  V  A  G  T  F  W  Y  F  R  L  C  *  H  C  S  *  S  I  T  R  H  R  T  F  S  K  R  H  Y  L  R  R  R  Q  P  F  D  R  K  S  D  G  V  R  Q  G  K  R  L  S  V  N  D  E  D  L  R  Q  L  *  G  G  S  G  *  S  G  S  G  C  R  L  C  S  S  S  D  E  P  A  C  E  V  G  R  V  G  S  P  E  E  E  T  C  F  A  G  K  A  C  C  V  K  R  E  G  A  G  Y  D  T  G  G  V  *  I  E  W  G  A  V  H  G  C  Y  Y  V  D  A  S  S  A  Y  C  *  D  E  R  V  P  L  *  F  S  A  F  W  T  T  Q  I   : D  T  *  H  V  F  L  S  W  *  R  G  V  S  *  E  *  H  S  R  E  V  R  S  *  C  S  W  C  S  R  *  C  W  L  V  *  Y  S  G  N  L  V  D  *  *  L  *  I  A  K  N  S  N  S  S  G  *  S  R  I  *  *  S  W  S  Y  P  I  L  W  R  F  F  E  L  E  R  R  K  G  S  N  F  L  L  F  I  F  S  *  Y  G  H  G  H  R  C  Y  W  I  Q  R  K  F  A  G  P  *  L  C  N  S  I  S  R  K  C  C  S  V  L  H  C  G  R  F  V  F  W  *  T  C  *  I  N  S  S  C  T  *  *  A  S  S  Q  Y  R  S  S  S  R  G  S  D  G  N  G  V  F  K  P  G  W  K  Y  Q  R  G  R  F  *  T  *  E  E  V  A  N  D  *  *  K  D  T  T  C  G  G  C  C  Q  G  I  N  *  E  R  F  R  A  R  *  D  H  L  L  V  G  I  *  L  S  F  L  *  N  L  N  A  M  C  C  C  N  *  M  L  Y  F  *  I  R  L  V  S  F  C  L  L  T  M  C  M  *  Y  R  C  L  E  M  N  W  P  S  *  F  E  Q  P  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67011" stop="67487"/>
                    <exon start="68191" stop="68811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKTIMAESSPVRFGILGCANIARKVSRAIALSPNATISAVGSRSIEKATAYAKENGYPSTTKIYGSYEAVLDDPEVDAVYVPLPTSLHVKWAVLAAQKKKHVLLEKPVALNVKELDMILEGCESNGVQYMDATMWMHHPRTAKMKEFLSDSQRFGQLKSIHSTFSYLGDAEFLENDIRVKSDLDALGALGDAGWYSIRAILWTNDYELPKTVTALGDPEFNEAGVILSCGASLSWKDGRVATFYCSFLANMAMDIVAIGSKGNLRVHDFVIPFQENVAPFYTVEGSCFGELARSIHPAPSEHQVNTDLPQEALMVTEFSNLVGSIKGEGSKPEKKWPTISRKTQLVVDAVKASIEKGFEPVEIIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="74877" PGL_stop="73109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74877" e_stop="74567"/>
            <exon e_start="73557" e_stop="73109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.997"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="74877" e_stop="74567" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="73557" e_stop="73109" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74877" stop="74567"/>
              <exon start="73557" stop="73109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTATTTATTTCTTGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG : GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTAATGGCCAATTGTGTCCATATGGTCTTTACTAATATTTACTTTTAAAAGAATAATTCTTGAATTTC</gDNA_template>
            <first_frame> L  Y  L  F  L  G  S  K  K  *  N  E  L  K  W  K  N  K  K  N  L  L  F  E  E  K  K  Y  *  Y  G  I  I  N  R  T  M  V  G  W  W  W  T  K  *  R  Y  G  F  C  K  P  I  F  I  *  C  I  G  P  G  L  W  W  *  I  G  L  W  *  W  I  G  L  *  E  *  *  N  F  C  F  G  P  C  *  C  R  L  A  *  N  *  S  S  S  C  F  S  C  *  Y  S  W :   C  E  E  G  R  F  K  G  S  A  R  R  *  H  I  G  D  *  R  *  K  S  K  R  G  R  K  R  R  *  Q  V  A  P  R  G  A  *  T  W  Q  F  L  Q  K  I  P  A  T  G  K  C  Q  R  G  R  Y  K  L  W  A  *  K  R  S  F  N  S  E  C  T  Q  K  R  N  T  A  G  S  K  K  C  *  G  Y  K  H  N  L  V  F  A  P  V  N  I  V  C  V  Y  *  G  F  *  I  S  G  S  L  V  C  T  N  *  K  Y  Q  I  V  F  F  T  F  C  V  I  I  *  W  P  I  V  S  I  W  S  L  L  I  F  T  F  K  R  I  I  L  E  F  </first_frame>
            <second_frame>  C  I  Y  F  L  E  A  R  N  K  M  N  *  S  G  K  I  R  K  I  C  Y  L  K  K  K  N  I  N  M  A  S  S  I  G  P  W  L  G  G  G  G  R  S  R  D  M  D  F  V  S  P  F  S  S  D  V  L  G  L  G  F  G  G  E  L  G  F  G  N  G  L  G  F  R  N  D  E  I  S  A  L  A  H  A  S  V  D  W  R  E  T  D  Q  A  H  V  F  L  V  D  I  P   : G  V  K  K  E  D  L  K  V  Q  L  E  D  N  I  L  E  I  S  G  E  R  V  K  E  E  E  K  G  D  D  K  W  H  R  V  E  R  K  R  G  S  F  C  R  K  F  R  L  P  E  N  A  N  V  E  G  I  S  C  G  L  E  N  G  V  L  T  V  N  V  P  K  K  E  T  Q  Q  V  P  K  N  V  K  A  I  N  I  T  *  F  L  R  L  *  I  *  Y  V  C  I  K  A  F  K  *  V  D  H  L  Y  V  Q  I  K  N  I  K  *  Y  F  L  H  F  V  *  L  F  N  G  Q  L  C  P  Y  G  L  Y  *  Y  L  L  L  K  E  *  F  L  N  F </second_frame>
            <third_frame>   V  F  I  S  W  K  Q  E  I  K  *  I  E  V  E  K  *  E  K  F  V  I  *  R  K  K  I  L  I  W  H  H  Q  *  D  H  G  W  V  V  V  D  E  V  E  I  W  I  L  *  A  H  F  H  L  M  Y  W  A  W  A  L  V  V  N  W  A  L  V  M  D  W  A  L  G  M  M  K  F  L  L  W  P  M  L  V  S  T  G  V  K  L  I  K  L  M  F  F  L  L  I  F  L  :  V  *  R  R  K  I  *  R  F  S  S  K  I  T  Y  W  R  L  A  V  K  E  *  K  R  K  K  K  A  M  T  S  G  T  A  W  S  V  N  V  A  V  S  A  E  N  S  G  Y  R  K  M  P  T  W  K  V  *  V  V  G  L  K  T  E  F  *  Q  *  M  Y  P  K  K  K  H  S  R  F  Q  K  M  L  R  L  *  T  *  L  S  F  C  A  C  E  Y  S  M  C  V  L  R  L  L  N  K  W  I  T  C  M  Y  K  L  K  I  S  N  S  I  F  Y  I  L  C  D  Y  L  M  A  N  C  V  H  M  V  F  T  N  I  Y  F  *  K  N  N  S  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74837" stop="74567"/>
                    <exon start="73557" stop="73289"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGKIRKICYLKKKNINMASSIGPWLGGGGRSRDMDFVSPFSSDVLGLGFGGELGFGNGLGFRNDEISALAHASVDWRETDQAHVFLVDIPGVKKEDLKVQLEDNILEISGERVKEEEKGDDKWHRVERKRGSFCRKFRLPENANVEGISCGLENGVLTVNVPKKETQQVPKNVKAINIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 24352 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2029 bytes was the average size of a spliced alignment
$ 18024 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1638 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 04:47:47
-->
