<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 23:11:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0040B16-1ppkB/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0040B16-1ppkB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-1ppkB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M367-F" ref_strand="+" ref_description="SGN-M367-F TG123-F [rflp_markers_forward]">
      <seq>taactgattggctagatggatatcctgctccaggtacatgcttctgctgttcatagaatcattttttctcgaattataatttcttatatttcaactttcaaaattggctggtttgacacgtccagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataaggtattttctctttattcttcaattcacatggtattacctggaagtttggccagtttgctagtgttgctaccattatccataatgtttgagactcttcagcataattgcttgtaatgaaagagcagacattttttgatacaactcttcttgacttcaacagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattgctataattggcaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-1ppkB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="40975" stop="42026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41275" g_stop="41726" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-M367-F" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M367-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41275" e_stop="41726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGA</genome_strand>
        <mrna_strand>TAACTGATTGGCTAGATGGATATCCTGCTC-C-AGGTACATGCTTCTGCTGTTC-ATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-1ppkB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M367-R" ref_strand="+" ref_description="SGN-M367-R TG123-R [rflp_markers_reverse]">
      <seq>atttgcaaaatgaatcaaaaaacagtgttcatcactcatccacaatgaaaataactaatgatgcagggaaaagattttcgaggaacatggaagagcatcatatgatgtatatttgaaaaaggtaccaaagagtgtcatatcataaatatcatattggaaaaaaagatatcgcaccttgagcaaaagcgactaccaggctaaatatggacactatgatctcacagactatcagaaagactacatactatgcaaaacttaataatcgaaaaaaatcaagtgaacaataaggttcatcaagagtacccacagttccaatccatgttctcaagagctctcgaattcctctttcttttcaatctaagctgatcactgcttgcatgtttcagagaagtttatcctcgcagcattacttaaaatattcatacttacttgacacaaatgaagaggaatagttttaactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-1ppkB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="43599" stop="42537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43299" g_stop="42837" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-M367-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M367-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43299" e_stop="42837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAAAATGAATCAAAAAACAGTGTTTATCACTCATCCACAATGAAAATAACTAATGATGCAGGGAAAAGATTTTCGAGGAACATGGAAGAGCATCATATGATGTATATTTGAAAAAGGTACCAAAGAGTGTCATATCATAAATATCATATTGGAAAAAAAGATATCGCACCTTGAGCAAAAGCGACTACCAGGCTAAATATGGACACTATGATCTCACAGACTATCAGAAAGACTACATACTATGCAAAACTTAATAATCGAAAAAAATCAAGTGAACAATAAGGTTCATCAAGAGTACCCACAGTTCCAATCCATGTTCTCAAGAGCTCTCGAATTCCTCTTTCTTTTCAATCTAAGCTGATCACTGCTTGCATGTTTCAGAGAAGTTTATCCTCGCAGCATTACTTAAAATATTCATACTTACTTGACACAAATGAAGAGGAATAGTTTTAACTAAA</genome_strand>
        <mrna_strand>ATTTGCAAAATGAATCAAAAAACAGTGTTCATCACTCATCCACAATGAAAATAACTAATGATGCAGGGAAAAGATTTTCGAGGAACATGGAAGAGCATCATATGATGTATATTTGAAAAAGGTACCAAAGAGTGTCATATCATAAATATCATATTGGAAAAAAAGATATCGCACCTTGAGCAAAAGCGACTACCAGGCTAAATATGGACACTATGATCTCACAGACTATCAGAAAGACTACATACTATGCAAAACTTAATAATCGAAAAAAATCAAGTGAACAATAAGGTTCATCAAGAGTACCCACAGTTCCAATCCATGTTCTCAAGAGCTCTCGAATTCCTCTTTCTTTTCAATCTAAGCTGATCACTGCTTGCATGTTTCAGAGAAGTTTATCCTCGCAGCATTACTTAAAATATTCATACTTACTTGACACAAATGAAGAGGAATAGTTTTAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="41275" PGL_stop="41726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41275" e_stop="41726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="41275" e_stop="41726" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41275" stop="41726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M367-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGA</gDNA_template>
            <first_frame> *  L  I  G  *  M  D  I  L  L  A  R  Y  M  L  L  L  F  N  R  I  I  F  S  R  I  I  I  S  Y  I  S  T  F  K  I  G  W  F  D  T  S  R  *  I  *  E  L  P  L  V  H  F  *  I  Q  W  L  I  R  Y  F  L  F  I  L  Q  F  T  W  Y  Y  L  E  V  W  P  V  C  *  C  C  Y  H  Y  P  *  C  L  R  L  F  S  I  I  A  C  N  E  R  A  D  I  F  *  Y  N  S  S  *  L  Q  Q  L  M  V  A  A  T  L  I  L  L  C  T  K  P  L  E  A  S  L  F  G  Q  F  P  W  L  L  T  V  P  S  I  A  I  I  G  R   </first_frame>
            <second_frame>  N  *  L  A  R  W  I  S  C  S  Q  G  T  C  F  C  C  S  I  E  S  F  F  L  E  L  *  F  L  I  F  Q  L  S  K  L  A  G  L  T  R  P  D  E  F  R  N  C  L  W  C  I  F  R  S  S  G  *  *  G  I  F  S  L  F  F  N  S  H  G  I  T  W  K  F  G  Q  F  A  S  V  A  T  I  I  H  N  V  *  D  S  S  A  *  L  L  V  M  K  E  Q  T  F  F  D  T  T  L  L  D  F  N  S  *  W  L  L  P  H  *  S  Y  C  A  P  N  L  W  R  L  V  C  L  D  N  F  H  G  Y  *  L  Y  L  L  L  L  *  L  A  G  </second_frame>
            <third_frame>   T  D  W  L  D  G  Y  L  A  R  K  V  H  A  S  A  V  Q  *  N  H  F  F  S  N  Y  N  F  L  Y  F  N  F  Q  N  W  L  V  *  H  V  Q  M  N  L  G  T  A  F  G  A  F  L  D  P  V  A  D  K  V  F  S  L  Y  S  S  I  H  M  V  L  P  G  S  L  A  S  L  L  V  L  L  P  L  S  I  M  F  E  T  L  Q  H  N  C  L  *  *  K  S  R  H  F  L  I  Q  L  F  L  T  S  T  A  N  G  C  C  H  I  D  L  I  V  H  Q  T  F  G  G  *  F  V  W  T  I  S  M  A  T  N  C  T  F  Y  C  Y  N  W  Q  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="43299" PGL_stop="42837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43299" e_stop="42837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="43299" e_stop="42837" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43299" stop="42837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M367-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCAAAATGAATCAAAAAACAGTGTTTATCACTCATCCACAATGAAAATAACTAATGATGCAGGGAAAAGATTTTCGAGGAACATGGAAGAGCATCATATGATGTATATTTGAAAAAGGTACCAAAGAGTGTCATATCATAAATATCATATTGGAAAAAAAGATATCGCACCTTGAGCAAAAGCGACTACCAGGCTAAATATGGACACTATGATCTCACAGACTATCAGAAAGACTACATACTATGCAAAACTTAATAATCGAAAAAAATCAAGTGAACAATAAGGTTCATCAAGAGTACCCACAGTTCCAATCCATGTTCTCAAGAGCTCTCGAATTCCTCTTTCTTTTCAATCTAAGCTGATCACTGCTTGCATGTTTCAGAGAAGTTTATCCTCGCAGCATTACTTAAAATATTCATACTTACTTGACACAAATGAAGAGGAATAGTTTTAACTAAA</gDNA_template>
            <first_frame> I  C  K  M  N  Q  K  T  V  F  I  T  H  P  Q  *  K  *  L  M  M  Q  G  K  D  F  R  G  T  W  K  S  I  I  *  C  I  F  E  K  G  T  K  E  C  H  I  I  N  I  I  L  E  K  K  I  S  H  L  E  Q  K  R  L  P  G  *  I  W  T  L  *  S  H  R  L  S  E  R  L  H  T  M  Q  N  L  I  I  E  K  N  Q  V  N  N  K  V  H  Q  E  Y  P  Q  F  Q  S  M  F  S  R  A  L  E  F  L  F  L  F  N  L  S  *  S  L  L  A  C  F  R  E  V  Y  P  R  S  I  T  *  N  I  H  T  Y  L  T  Q  M  K  R  N  S  F  N  *  </first_frame>
            <second_frame>  F  A  K  *  I  K  K  Q  C  L  S  L  I  H  N  E  N  N  *  *  C  R  E  K  I  F  E  E  H  G  R  A  S  Y  D  V  Y  L  K  K  V  P  K  S  V  I  S  *  I  S  Y  W  K  K  R  Y  R  T  L  S  K  S  D  Y  Q  A  K  Y  G  H  Y  D  L  T  D  Y  Q  K  D  Y  I  L  C  K  T  *  *  S  K  K  I  K  *  T  I  R  F  I  K  S  T  H  S  S  N  P  C  S  Q  E  L  S  N  S  S  F  F  S  I  *  A  D  H  C  L  H  V  S  E  K  F  I  L  A  A  L  L  K  I  F  I  L  T  *  H  K  *  R  G  I  V  L  T  K </second_frame>
            <third_frame>   L  Q  N  E  S  K  N  S  V  Y  H  S  S  T  M  K  I  T  N  D  A  G  K  R  F  S  R  N  M  E  E  H  H  M  M  Y  I  *  K  R  Y  Q  R  V  S  Y  H  K  Y  H  I  G  K  K  D  I  A  P  *  A  K  A  T  T  R  L  N  M  D  T  M  I  S  Q  T  I  R  K  T  T  Y  Y  A  K  L  N  N  R  K  K  S  S  E  Q  *  G  S  S  R  V  P  T  V  P  I  H  V  L  K  S  S  R  I  P  L  S  F  Q  S  K  L  I  T  A  C  M  F  Q  R  S  L  S  S  Q  H  Y  L  K  Y  S  Y  L  L  D  T  N  E  E  E  *  F  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 4080 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 23:11:07
-->
