<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 18:12:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740652" ref_strand="+" ref_description="SGN-E740652 [LC22BD10]">
      <seq>cttcattcaatgccatagaaagcagtgttatttcaaatattatgtcaaaggacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaagcatggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttccaggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattctctcaacgaattgcttctcaaacaccatccatgcatcagtcacgaaggcatcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatcaaggatggtggatcaacaccaaagtttcaattcatcttcctattcacaatttccacagcagaagcttgcgacaaatgaccacatcttttatggcttccagcacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="138" stop="2339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="438" g_stop="755" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1332" g_stop="1442" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="429" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1579" g_stop="2039" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="890" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E740652" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="438" e_stop="755"/>
          <exon e_start="1332" e_stop="1442"/>
          <exon e_start="1579" e_stop="2039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAAT</genome_strand>
        <mrna_strand>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCAGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTTATGGCTTCCAGCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540903" ref_strand="+" ref_description="SGN-E540903 [TUS-61-G17]">
      <seq>ggacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaagcatggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttcctggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattctctncacgaattgcttctcaaacaccatccatgcatcagtcacgaaggcatcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="187" stop="2233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="487" g_stop="755" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1332" g_stop="1442" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="380" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1579" g_stop="1933" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="735" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E540903" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="487" e_stop="755"/>
          <exon e_start="1332" e_stop="1442"/>
          <exon e_start="1579" e_stop="1933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATC</genome_strand>
        <mrna_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTNCACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405263" ref_strand="+" ref_description="SGN-E405263 [PPC-17-M7]">
      <seq>ggacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgaatctgttgggaagcatggtgcttcctggaattctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttccaggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatgtcaaagaattcatccatccttcaggatttcagagagaacaaggatcagtatgtgcacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgtgctctctctggtagtcgtttagtaaatagttcttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgcaggtgatatcgattttgttgaccctgccacatcagtcttcggaaatggcaaaccaacaaatggttttgatatatcagccttggatattgggtcagcttgtgtgccacagaggagagggtttgaagatgaggcaagaatctggcatcttatgcaacaaaaatctttagatcaagggaaattctctcaacgaattgctttctcaacaccatccgtgcatcagtcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="187" stop="2170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="487" g_stop="755" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1332" g_stop="1442" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="380" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1579" g_stop="1870" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="675" r_length="295" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E405263" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="487" e_stop="755"/>
          <exon e_start="1332" e_stop="1442"/>
          <exon e_start="1579" e_stop="1870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAG---TTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACG</genome_strand>
        <mrna_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAATCTGTTGGGAAGCATGGTGCTTCCTGGAATTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCAGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATGTCAAAGAATTCATCCATCCTTCAGGATTTCAGAGAGAACAAGGATCAGTATGTGCACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTGCTCTCTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCAGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTCGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGATATTGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGATGAGGCAAGAATCTGGCATCTTATGCAACAAAAATCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTTCTCAACACCATCCGTGCATCAGTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290768" ref_strand="+" ref_description="SGN-E290768 [cLET-10-P19]">
      <seq>gacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaagcatggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttcctggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatgggtttgatatatcagccttggagatcgggtcagcttgtgtgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="188" stop="2052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="488" g_stop="755" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1332" g_stop="1442" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="379" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1579" g_stop="1752" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="553" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E290768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="488" e_stop="755"/>
          <exon e_start="1332" e_stop="1442"/>
          <exon e_start="1579" e_stop="1752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCAC</genome_strand>
        <mrna_strand>GACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGGTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362586" ref_strand="+" ref_description="SGN-E362586 [cLPP-1-D19]">
      <seq>ttttgtgaagcaagatgacttttccaggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcagagaaaacaaggatcagtatgtgcacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatgtcgattttgttgaccctgccccatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="310" stop="1981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="610" g_stop="755" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1332" g_stop="1442" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="257" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1579" g_stop="1681" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="363" r_length="106" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E362586" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="610" e_stop="755"/>
          <exon e_start="1332" e_stop="1442"/>
          <exon e_start="1579" e_stop="1681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAG---TTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGT</genome_strand>
        <mrna_strand>TTTTGTGAAGCAAGATGACTTTTCCAGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCAGAGAAAACAAGGATCAGTATGTGCACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATGTCGATTTTGTTGACCCTGCCCCATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362463" ref_strand="+" ref_description="SGN-E362463 [cLPP-1-D7]">
      <seq>gagaactagtctcgagttctttatgacttttccaggctaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcatgatttcagagaaaacaaggatcagtatgtgcacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttactaaatagttcttcatcaagtttgcttcacacaccatcaaccggaagcattatcagtgctggtgatgtcgattttgttgaccctgccccatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaggcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="324" stop="2126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="624" g_stop="755" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="154" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1332" g_stop="1442" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="265" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1579" g_stop="1826" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="516" r_length="251" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E362463" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="624" e_stop="755"/>
          <exon e_start="1332" e_stop="1442"/>
          <exon e_start="1579" e_stop="1826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAG---TTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTC</genome_strand>
        <mrna_strand>ATGACTTTTCCAGGCTAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCATGATTTCAGAGAAAACAAGGATCAGTATGTGCACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTACTAAATAGTTCTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTATCAGTGCTGGTGATGTCGATTTTGTTGACCCTGCCCCATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAGGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605860" ref_strand="+" ref_description="SGN-E605860 [21791]">
      <seq>aaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgtgctctctctggtagtcgtttagtaaatagttcttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgcaggtgatagcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaactaatggttttgatatatcagccttggatattgggtcagcttgtgtgccacagaggagagggtttgaagatgaggcaagaatctggcatcttatgcaacaaaaatctttagatcaagggaaattctctcaacgaattgcttctcaaacaccatccatgcatcagtcacgaaggtttcctagtcatggcggagatgagtatcttggccatgatgatatatatggcttctcttcaaggatggtggatcaacaccaaagtttcaatccatcttcgtattcacaatgttccacagcagaagcttgcgacaaatggccacatctttaatggcttccagcacaatagcttggacgatatccatcgcagtaatgaagtggacagcatgacacaacaccagtcaaatgaatcattaggtttcaaaaaattatatgctggatatggagatgtgatgttccagacgccccgggtctggcgatgtatacaccagagtatttgggatgtaactcacaagaacaccattacaaaaatgaaattgtccccaactattttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="1043" stop="2546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1343" g_stop="1442" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1579" g_stop="2246" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="775" r_length="675" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E605860" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1343" e_stop="1442"/>
          <exon e_start="1579" e_stop="2246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAG---TTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAAT-TTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCC-GGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAG-ACA-CTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGT</genome_strand>
        <mrna_strand>AAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTGCTCTCTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCAGGTGATAGCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACTAATGGTTTTGATATATCAGCCTTGGATATTGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGATGAGGCAAGAATCTGGCATCTTATGCAACAAAAATCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGTTTCCTAGTCATGGCGGAGATGAGTATCTTGGCCATGATGATATATATGGCTTCTCTTCAAGGATGGTGGATCAACACCAAAGTTTCAATCCATCTTCGTATTCACAATGTTCCACAGCAGAAGCTTGCGACAAATGGCCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGCAGTAATGAAGTGGACAGCATGACACAACACCAGTCAAATGAATCATTAGGTTTCAAAAAATTATATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACTCACAAGAACACCATTACAAAAATGAAATTGTCCCCAACTATTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548461" ref_strand="+" ref_description="SGN-E548461 [TUS-61-G17](-)">
      <seq>gatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattctctcaacgaattgcttctcaaacaccatccatgcatcagtcacgaaggcatcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatcaaggatggtggatcaacaccaaagtttcaattcatcttcctattcacaatttccacagcagaagcttgcgacaaatgaccacatctttaatggcttccagcacaatagcttggacgatatccatcgtggtaatgaagtggacaacatgacacaacaccagtcaaatgattcattaggtttcaaaaaattctatgctggatatggagatgtgatgttccagacgccccggtctggcgatgtatacaccagagtatttgggatgtaacacacaagacactttactaaaatgaaattgtccccaactattttgtgttgtttgcagaaaattataaatatgttaccagtaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="1109" stop="2590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1409" g_stop="1442" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1579" g_stop="2276" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="732" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="735" polyA_stop="755"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E548461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1409" e_stop="1442"/>
          <exon e_start="1579" e_stop="2276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCA</genome_strand>
        <mrna_strand>GATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244016" ref_strand="+" ref_description="SGN-E244016 [cLEE-1-E24]">
      <seq>gccacagaggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattctctcaacgaattgcttctcaaacaccatccatgcatcagtcacgaaggcatcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatcaaggatggtggatcaacaccaaagtttcaattcatcttcctattcacaatttccacagcagaagcttgcgacaaatgaccacatctttaatggcttccagcacaatagcttggacgatatccatcgtggtaatgaagtggacaacatgacacaacaccagtcaaatgattcattaggtttcaaaaaattctatgctggatatggagatgtgatgttccagacgccccggtctggcgatgtatacaccagagtatttgggatgtaacacacaagacactttactaaaatgaaattgtccccaactattttgtgttgtttgcagaaaattataaatatgttaccagttaattacacatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="1448" stop="2594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1748" g_stop="2294" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E244016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1748" e_stop="2294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCAGTTAATTACACATACTTG</genome_strand>
        <mrna_strand>GCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCAGTTAATTACACATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438193" ref_strand="+" ref_description="SGN-E438193 [cSTA-6-D11]">
      <seq>ctctaccgtccgatccctcaaacgctaaagctataactccatcaacaaagcgcgccaaatacaaaaattttcttcatcttcttctccactgatccacaaagcaaacgaacggaaaattgaagaaaattcagaaaaaaaatctgatccggtcaacaggtttggatagtgttgttgttgagtatggccgaagttccggcgagtccaggaggtggttgtggaagtcatgagagtggtggtgaacggagtcctcaatcgaatgtgagggaacaggacaggtaccttccgatagcgaacatcggtcgtatcatgaaaaaaggattgcctgctaatgctaagatagctaaggaagctaaagatactgttcaggaatgtgtttctgagttcatcagcttcatcactagcgaggcaagtgacaagtgtcaaaaagagaagagaaagactattaatggagatgatttggtatggtctttgaccaccttaggatttgaggactacattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="2996" stop="6150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3296" g_stop="3452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3453" i_stop="3527" i_length="75">
            <donor d_prob="0.992" d_score="0.81"/>
            <acceptor a_prob="0.000" a_score="0.75"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3528" g_stop="3773" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="404" r_length="248" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3774" i_stop="5753" i_length="1980">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5754" g_stop="5850" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="501" r_length="97" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E438193" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3296" e_stop="3452"/>
          <exon e_start="3528" e_stop="3773"/>
          <exon e_start="5754" e_stop="5850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCGTCCGATCTCTCAAATGCTAAAGCTTTCAATCCATCAACAAAGCGCGCCAAATACAAAAAAAATTTAACTTCATTTTCTTCTCTACTGATCCAGAAAGAAAACGAAGGGAAAATTGAAGAAAATTCAG-AAAAAAAT-T-CTCCGGTCAACAAGTTAGTAAGCATCTAAGGTTAGGTTATATAGTTTTTTTTTAAATTTTTTTTTGTGAATTTTATGGTGGTTGTTTTGTGTTTTTAGGGTT-TGGAT-AGTATGGCAGAAGTTCCGGCGAGTCCAGGAGGTGGTTGTGGTAGCCATGAGAGTGGTGGTGAACGGAGTCCTCAATCGAATGTGAGGGAACAGGACAGGTACCTTCCGATAGCGAACATCGGTCGTATCATGAAAAAGGGATTGCCTACTAATGCTAAGATAGCTAAGGAGGCTAAAGATACTGTCCAGGAATGTGTTTCTGAGTTCATCAGTTTCATCACTAGTGAGTAAGTGTTTCTTTCACTTTTACTTGTTCAAATACACATGAATATTTTACCATATTAATACAATTGATGTGTAATTTAGTGTTAAATCTTGTGATATGATTTGGAAATAAGTAATCGATGTTGAAGGTAAAAGATAAAAAAATGTTTTCCATGCTAAAAGTGAAAATATATTTTAGTATAGCGGAGAAATAAAAATGAATTGAGGGAGTATAATGCTAGGATTTGAACTTTATGGATTCTAATTTAGTCCAGTGATATAAGCGTTCCTAATTGGGTTCTAAATTTAATTTTGTAGTTATTAGTGAATCTTAATACAATCTGGGTTGGAACCCATCGGCTTGTAGCTCCACCATGTGATATTAGGAAAATTGACATGCTCCCATTCCCTTTAGATTGATAATGGGATAAATACAGGTTAAAAGTTCATATTGTGAAAGCACATCCAAGTGTTCAGGAGTGTGTCTCTGAGTTCATGAGTTTGATCACCAGCGAGCAACTGTTATGTTGTTGTATTTGAACTTTATGAATTCGAAATTTTAGTATAGTGACATCAAATGCTACTAACTGGGTCCTAAACTTAATTTTTATACGTATGTATGTGTGTTTCTTAATATAAATACCGCATTTGAACTAAAGCAATTGGGTTTGGAACCCATTTGTTGGCTTGTAATCCTCCCCTATACTAATAGGAAAATCAATATACTTCCATACCCTTAGATTGATAATGGAATAAACACAGGTGGTGAGTTTTGTTAGTCAGAACACATCCAAGTGCTTCAATGAAGAGAAAAGAACAAATCAGTTAAGAGCGACATCATACAGTAGTCAATACAAGTTAAGAGATTTAATAGCTTCATATACCTAAGATTTATTTGAAATTTGATGTGTTATTAGTTCATTGTACTTACAAATGTTTAAATTTGAAGTGGTATTCTTGAATCTCGGAGTTCATTGTGCTCGGAGTCTCTTTTTAGGTTTAAAATATGGTGGAATCCAGATTTTTTTTGCAACTGTGTTCTCTACACATATTTTCTATGCGTATGGATGCAACTTAGATGATTTGCTATACTTGTTGAAACTACCATGTTTGATGTTCTTATGGATACGACTTAAATGATTTGCGATATATGTTGAAAAATTGTAGTGCATCTACATTTATGAGCTTCAAATTTTTTTGAACAAGAACAAAACAATGTTCGTAATTATTTTGAGCATATCGGAAACATTTGTAGGAAGAGTGTAAGTACTGTTGGTAAGGGCCTAAGAGGTGAGAAAGAGAGTCTGTGCGAGGGATGGAAGGAAACTTTTTTTTGGAGGCATTTGGGGGAGGGAAGTAGAGAAGAAAAAGAGGACAAAATGATTGGGCCCACTATGGGTGACAGAGGAATTTGGAGAAGTGTACATTCACATGTAATTCCACACCACATGAAGAATAGCACAAGTTGAGATTAAATGGTCTAGGTTGATACCAGTTGTCAAAGAATGGCAAATATGATACGAAAGGGTGACAAGGGTCTTTTTATTGCCAACTTTCAAAGGGGGTCAAAGTTTAACAATATCAAATAGTTGAGGAGAAATTTTGGAGCTTTTCCGTAGTTATTAATGATGTATAACATAGTAAAAAGGTGCCCCATATAACAAAAATGTTAGTCTATTTGTGTACACTGTATGTTTACTATATTCTTTCTTTAGATCAGAGAAATTCTATATGATAGTTTACTCTTTCTATGGGTACAGCTATTACTGTTTTAATGGTCAAGGTTTGAATTCCAAACCGTCTATATTCTCTTAGTCTTCAAGTGAGGACTTGTGTATTACTGTACATGTTAATAGATGATTGCAAATCGAAAAATTGTTTTATAAATAATGGTTCTGCGATAGTAGCTTTCTTTTAACTTAGATGTTGACATTTACTGATAACGTTGAAGTTGTAGTTTGTGGTCTTGCATGTGATTTTAAATGTGTTTCTGTCTTTTACAGGGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACGATTAATGGAGATGATTTGATATGGTCACTGACCACCTTAGGATTTGAGGACTACATTGAG</genome_strand>
        <mrna_strand>CTCTACCGTCCGATCCCTCAAACGCTAAAGCTATAACTCCATCAACAAAGCGCGCCAAATAC---AAAAATTT-TCTTCATCTTCTTCTCCACTGATCCACAAAGCAAACGAACGGAAAATTGAAGAAAATTCAGAAAAAAAATCTGATCCGGTCAACAG...........................................................................GTTTGGATAGTGTTGTTGTTGAGTATGGCCGAAGTTCCGGCGAGTCCAGGAGGTGGTTGTGGAAGTCATGAGAGTGGTGGTGAACGGAGTCCTCAATCGAATGTGAGGGAACAGGACAGGTACCTTCCGATAGCGAACATCGGTCGTATCATGAAAAAAGGATTGCCTGCTAATGCTAAGATAGCTAAGGAAGCTAAAGATACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATCACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACTATTAATGGAGATGATTTGGTATGGTCTTTGACCACCTTAGGATTTGAGGACTACATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591128" ref_strand="+" ref_description="SGN-E591128 [44833]">
      <seq>agcaaacgaacggaaaattgaagaaaattcagaaaaaaattctgatccggtcaacaggtttgaatagtgttgttgttgagtatggcggaagttccggcgagtccaggaggtggttgtggaagtcatgagagtggtggtgaacggagtcctcaatcaaatgtgagggaacaggacaggtaccttcccatagcgaacatcggtcgtatcatgaaaaagggattgcctgctaatgctaagatagctaaggaagctaaagatactgttcaggaatgtgtttctgagttcatcagcttcatcactagcgaggcaagtgacaagtgccaaaaagagaagagaaagacgattaatggagatgatttggtatggtctttgaccaccttaggatttgaggactacattgagccactaaaggcctatttgattaggcacagagagatggagggagacaccaagggatcttctagggctggagatacgtctgctagaaacgatatagttggaggtcagcgcagtcccactacacagtttgtctatgatgggtctttttcacaaggctttgactatgggaactcccaaatgtgaatttctaaaaattacaacggtgctgatgcgagtatcttctgccttccgttcatgttgatctatgtactaagccattcaattggtttgctgataatatatgtttgaaagctctagggaaccgaaagtatgcttgcatatcttgaatttagccattcaacaaaacactttattttcctgaacttctcttccagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="3099" stop="7939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3538" g_stop="3773" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="305" r_length="235" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3774" i_stop="5753" i_length="1980">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5754" g_stop="5883" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="435" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5884" i_stop="6174" i_length="291">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6175" g_stop="6180" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="441" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6181" i_stop="6278" i_length="98">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6279" g_stop="6362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="525" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6363" i_stop="6473" i_length="111">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6474" g_stop="6538" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="590" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6539" i_stop="7460" i_length="922">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.954" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7461" g_stop="7639" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="775" r_length="185" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E591128" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3538" e_stop="3773"/>
          <exon e_start="5754" e_stop="5883"/>
          <exon e_start="6175" e_stop="6180"/>
          <exon e_start="6279" e_stop="6362"/>
          <exon e_start="6474" e_stop="6538"/>
          <exon e_start="7461" e_stop="7639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGATAGTATGGCAGAAGTTCCGGCGAGTCCAGGAGGTGGTTGTGGTAGCCATGAGAGTGGTGGTGAACGGAGTCCTCAATCGAATGTGAGGGAACAGGACAGGTACCTTCCGATAGCGAACATCGGTCGTATCATGAAAAAGGGATTGCCTACTAATGCTAAGATAGCTAAGGAGGCTAAAGATACTGTCCAGGAATGTGTTTCTGAGTTCATCAGTTTCATCACTAGTGAGTAAGTGTTTCTTTCACTTTTACTTGTTCAAATACACATGAATATTTTACCATATTAATACAATTGATGTGTAATTTAGTGTTAAATCTTGTGATATGATTTGGAAATAAGTAATCGATGTTGAAGGTAAAAGATAAAAAAATGTTTTCCATGCTAAAAGTGAAAATATATTTTAGTATAGCGGAGAAATAAAAATGAATTGAGGGAGTATAATGCTAGGATTTGAACTTTATGGATTCTAATTTAGTCCAGTGATATAAGCGTTCCTAATTGGGTTCTAAATTTAATTTTGTAGTTATTAGTGAATCTTAATACAATCTGGGTTGGAACCCATCGGCTTGTAGCTCCACCATGTGATATTAGGAAAATTGACATGCTCCCATTCCCTTTAGATTGATAATGGGATAAATACAGGTTAAAAGTTCATATTGTGAAAGCACATCCAAGTGTTCAGGAGTGTGTCTCTGAGTTCATGAGTTTGATCACCAGCGAGCAACTGTTATGTTGTTGTATTTGAACTTTATGAATTCGAAATTTTAGTATAGTGACATCAAATGCTACTAACTGGGTCCTAAACTTAATTTTTATACGTATGTATGTGTGTTTCTTAATATAAATACCGCATTTGAACTAAAGCAATTGGGTTTGGAACCCATTTGTTGGCTTGTAATCCTCCCCTATACTAATAGGAAAATCAATATACTTCCATACCCTTAGATTGATAATGGAATAAACACAGGTGGTGAGTTTTGTTAGTCAGAACACATCCAAGTGCTTCAATGAAGAGAAAAGAACAAATCAGTTAAGAGCGACATCATACAGTAGTCAATACAAGTTAAGAGATTTAATAGCTTCATATACCTAAGATTTATTTGAAATTTGATGTGTTATTAGTTCATTGTACTTACAAATGTTTAAATTTGAAGTGGTATTCTTGAATCTCGGAGTTCATTGTGCTCGGAGTCTCTTTTTAGGTTTAAAATATGGTGGAATCCAGATTTTTTTTGCAACTGTGTTCTCTACACATATTTTCTATGCGTATGGATGCAACTTAGATGATTTGCTATACTTGTTGAAACTACCATGTTTGATGTTCTTATGGATACGACTTAAATGATTTGCGATATATGTTGAAAAATTGTAGTGCATCTACATTTATGAGCTTCAAATTTTTTTGAACAAGAACAAAACAATGTTCGTAATTATTTTGAGCATATCGGAAACATTTGTAGGAAGAGTGTAAGTACTGTTGGTAAGGGCCTAAGAGGTGAGAAAGAGAGTCTGTGCGAGGGATGGAAGGAAACTTTTTTTTGGAGGCATTTGGGGGAGGGAAGTAGAGAAGAAAAAGAGGACAAAATGATTGGGCCCACTATGGGTGACAGAGGAATTTGGAGAAGTGTACATTCACATGTAATTCCACACCACATGAAGAATAGCACAAGTTGAGATTAAATGGTCTAGGTTGATACCAGTTGTCAAAGAATGGCAAATATGATACGAAAGGGTGACAAGGGTCTTTTTATTGCCAACTTTCAAAGGGGGTCAAAGTTTAACAATATCAAATAGTTGAGGAGAAATTTTGGAGCTTTTCCGTAGTTATTAATGATGTATAACATAGTAAAAAGGTGCCCCATATAACAAAAATGTTAGTCTATTTGTGTACACTGTATGTTTACTATATTCTTTCTTTAGATCAGAGAAATTCTATATGATAGTTTACTCTTTCTATGGGTACAGCTATTACTGTTTTAATGGTCAAGGTTTGAATTCCAAACCGTCTATATTCTCTTAGTCTTCAAGTGAGGACTTGTGTATTACTGTACATGTTAATAGATGATTGCAAATCGAAAAATTGTTTTATAAATAATGGTTCTGCGATAGTAGCTTTCTTTTAACTTAGATGTTGACATTTACTGATAACGTTGAAGTTGTAGTTTGTGGTCTTGCATGTGATTTTAAATGTGTTTCTGTCTTTTACAGGGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACGATTAATGGAGATGATTTGATATGGTCACTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGTACAGAGAGGTAATTGCAGTTTCTCCTCAGTTACTGATGATAAGTAAGCTTTGATAAATGAAGAAATCTTGATATTCTTGTGCGTGTGTTTATAATCGAGAACTAAAGAGAGAGAATAGTTCTTTTCTGCTCATCTGGAAGATTTTCTGTGTATCAGTGGTCTATATGAACTTCCTCTGTAGTTTTGAAGAACTTCTATTTTACCCCGTGTTATTATCTGATTATCAACTGATCAATGTCTCTTTTTCTGGTGATGAATCATTCTATTTGCTGGTCTGTGGGCTAATCATGGTATTGCAGATGGAGGTATGCATTGCTTCCCCGCATCAATGATATAGAGTTGCTTATTGTCTTTACCTCTGATATGTCACTAGCTATGCCTTGGGGATTGTTTCTAATGTCAGGGAGACACCAAGGGATCTTCTAGAGCTGGAGATACGTCTGCCAGAAACGATATAGTTGGAAGTCAGCTCAGTCCCGGTACACAGGTAAGAGGGTACCAAACTCTATTCACCATGTTCTGGTAATCTCAACCCTTATAGAAATTTAAGTAAATAGGTGTTACTATTTTGACTCCTATTTTTCGTGGACAATGGCAGTTTGTCTATGATGGGTCTTTTTCACAAGGCTTTGACTATGGGAACTCCCAAATGTGAATTTCCTAGTAAGTGCTTCTTCATTCTCTTCATACTAACCTTGCTTCTCTCTTTTGTTTTCTTTTAGCCTTTATTTATAACATCTTTTCATTGAGGAAAACCATTGGTTATCATCCTTTTATTAATTTTGATTTTCCATTGGAGTTGATTAGTTCCTGTATGTACCCTATGATGGCCCCCTTTCCTCCCCCACTATTAATTTATATATGAGGTGCACACGGAAATATTTAAATAAGAGACATTTACCTTTTTACATTCTTTAGGGCGAGATGAACAAATATCGAGCTAAACTTTCTTTAACTTGATCTCTTGTTTTTTTAACAAGTAAACAAGCAACAAAGGCAAGAAACTAGATCTGTCTAGGTACAGTGAAGCTACTAGAGTGTAATTGTTCCTTATAAATCTGGTAAGGAGTTGAGCAAGAGTAAAATGTCTGTAGTATACATCTTTAATATACATTAGAGGGCTAATATTTGCAACTGTTCTATTTTAAGAGACGTACTGTAACAAATACTAGGTTTAATTGATTGCAGAGAAGACTATAGTTTGGACAATGGGTAGATTAAAATTGGTGTTCATCGAGCTTCCTACCTCTCAAAAAGAGAGGGGTTGGGGAGATGGCTGCCTACCTCTCAATAGAGTGTATTAAGGTAAGATAAGTTGAAGCATATTTTTTGGGGAACTACAAATAAAAACTGTGATTTGATTTGTGTTAAGATTTGCATACGCTCTACTTTTTCCAGACCCCACTTATGGGATTACACCGGGAATGCTTCTTGTGGTTGTTGTTATACAAATACAAACTGTAAATTAGTATTAACATGAATGAAGAAGATTCTGTTGTGCGGAACAGAACTTTGATACTCTTGCTTCTCTGTTACTGTCTTGATAGTTGAATTCAAGTGCTGATTATGTTTGGTCGATTTGCAG-TATTACAACGGTGCTGATGCGAGTATCTTCTGCCTAAAGTTCTTGTTTATCTATGTACTAAGCCATTCAA-TGG-TTGCTGATAATATATGTTTGAAAGCTCTA-GGAACCGAAAGTAT-CCTGCAAATCTTGAATTTAGCCATACTGCAAAACACTTTATTTT-CTGAACTTCTCTTCCAGTA</genome_strand>
        <mrna_strand>TG-TTGTTGAGTATGGCGGAAGTTCCGGCGAGTCCAGGAGGTGGTTGTGGAAGTCATGAGAGTGGTGGTGAACGGAGTCCTCAATCAAATGTGAGGGAACAGGACAGGTACCTTCCCATAGCGAACATCGGTCGTATCATGAAAAAGGGATTGCCTGCTAATGCTAAGATAGCTAAGGAAGCTAAAGATACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATCACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTGACAAGTGCCAAAAAGAGAAGAGAAAGACGATTAATGGAGATGATTTGGTATGGTCTTTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGCACAGAGAG...................................................................................................................................................................................................................................................................................................ATGGAG..................................................................................................GGAGACACCAAGGGATCTTCTAGGGCTGGAGATACGTCTGCTAGAAACGATATAGTTGGAGGTCAGCGCAGTCCCACTACACAG...............................................................................................................TTTGTCTATGATGGGTCTTTTTCACAAGGCTTTGACTATGGGAACTCCCAAATGTGAATTTCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTACAACGGTGCTGATGCGAGTATCTTCTGCCTTCCGTTCATGTTGATCTATGTACTAAGCCATTCAATTGGTTTGCTGATAATATATGTTTGAAAGCTCTAGGGAACCGAAAGTATGCTTGCATATCTTGAATTTAGCCATTCAACAAAACACTTTATTTTCCTGAACTTCTCTTCCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592768" ref_strand="+" ref_description="SGN-E592768 [35984]">
      <seq>ggacagataccttccgatagcgaacatcggtcgtatcatgaaaaaaggattgcctgctaatgctaagatagctaaggaagctaaagatactgttcaggaatgtgtttctgagttcatcagcttcatcactagcgaggcaagtgacaagtgtcaaaaagagaagagaaagacaattaatggagatgatttggtatggtctttgaccaccttaggatttgaggactacattgagccactaaaggcctatttgattaggtacagagagatggaggtatgcattgcttccccgcatcaatgatatagagttgctttttgtctttacctctgatatgtcactagctatgccttggggattgtttctaatgtcagggagacaccaagggatcttctagggctggagatacgtctgctagaaacgatatagttggaggtcagctcagtccaactacacagtttgtctatgatgggtctttttcccaaggcttcgactatgggaactcccaaatgtgaatttctaaaattacaacggtgctgatgcgagtatcttctgccttccgttcatgttgatctatgtactaagccattcaatggttgctgataatatatgtttgaaagctctaggaaccgaaagtatgctgcaaatcttgaatttagccatacaacaaaacactttattttctgaacttctcttccagtactttgatgctctgtacatgtaacatgtgaattggattttattgttgtaaactgagagcaatctcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="3339" stop="8009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3639" g_stop="3773" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3774" i_stop="5753" i_length="1980">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5754" g_stop="5883" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="265" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5884" i_stop="6174" i_length="291">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6175" g_stop="6362" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="453" r_length="188" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6363" i_stop="6473" i_length="111">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6474" g_stop="6538" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="518" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6539" i_stop="7460" i_length="922">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.954" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7461" g_stop="7709" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="766" r_length="248" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E592768" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3639" e_stop="3773"/>
          <exon e_start="5754" e_stop="5883"/>
          <exon e_start="6175" e_stop="6362"/>
          <exon e_start="6474" e_stop="6538"/>
          <exon e_start="7461" e_stop="7709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGGTACCTTCCGATAGCGAACATCGGTCGTATCATGAAAAAGGGATTGCCTACTAATGCTAAGATAGCTAAGGAGGCTAAAGATACTGTCCAGGAATGTGTTTCTGAGTTCATCAGTTTCATCACTAGTGAGTAAGTGTTTCTTTCACTTTTACTTGTTCAAATACACATGAATATTTTACCATATTAATACAATTGATGTGTAATTTAGTGTTAAATCTTGTGATATGATTTGGAAATAAGTAATCGATGTTGAAGGTAAAAGATAAAAAAATGTTTTCCATGCTAAAAGTGAAAATATATTTTAGTATAGCGGAGAAATAAAAATGAATTGAGGGAGTATAATGCTAGGATTTGAACTTTATGGATTCTAATTTAGTCCAGTGATATAAGCGTTCCTAATTGGGTTCTAAATTTAATTTTGTAGTTATTAGTGAATCTTAATACAATCTGGGTTGGAACCCATCGGCTTGTAGCTCCACCATGTGATATTAGGAAAATTGACATGCTCCCATTCCCTTTAGATTGATAATGGGATAAATACAGGTTAAAAGTTCATATTGTGAAAGCACATCCAAGTGTTCAGGAGTGTGTCTCTGAGTTCATGAGTTTGATCACCAGCGAGCAACTGTTATGTTGTTGTATTTGAACTTTATGAATTCGAAATTTTAGTATAGTGACATCAAATGCTACTAACTGGGTCCTAAACTTAATTTTTATACGTATGTATGTGTGTTTCTTAATATAAATACCGCATTTGAACTAAAGCAATTGGGTTTGGAACCCATTTGTTGGCTTGTAATCCTCCCCTATACTAATAGGAAAATCAATATACTTCCATACCCTTAGATTGATAATGGAATAAACACAGGTGGTGAGTTTTGTTAGTCAGAACACATCCAAGTGCTTCAATGAAGAGAAAAGAACAAATCAGTTAAGAGCGACATCATACAGTAGTCAATACAAGTTAAGAGATTTAATAGCTTCATATACCTAAGATTTATTTGAAATTTGATGTGTTATTAGTTCATTGTACTTACAAATGTTTAAATTTGAAGTGGTATTCTTGAATCTCGGAGTTCATTGTGCTCGGAGTCTCTTTTTAGGTTTAAAATATGGTGGAATCCAGATTTTTTTTGCAACTGTGTTCTCTACACATATTTTCTATGCGTATGGATGCAACTTAGATGATTTGCTATACTTGTTGAAACTACCATGTTTGATGTTCTTATGGATACGACTTAAATGATTTGCGATATATGTTGAAAAATTGTAGTGCATCTACATTTATGAGCTTCAAATTTTTTTGAACAAGAACAAAACAATGTTCGTAATTATTTTGAGCATATCGGAAACATTTGTAGGAAGAGTGTAAGTACTGTTGGTAAGGGCCTAAGAGGTGAGAAAGAGAGTCTGTGCGAGGGATGGAAGGAAACTTTTTTTTGGAGGCATTTGGGGGAGGGAAGTAGAGAAGAAAAAGAGGACAAAATGATTGGGCCCACTATGGGTGACAGAGGAATTTGGAGAAGTGTACATTCACATGTAATTCCACACCACATGAAGAATAGCACAAGTTGAGATTAAATGGTCTAGGTTGATACCAGTTGTCAAAGAATGGCAAATATGATACGAAAGGGTGACAAGGGTCTTTTTATTGCCAACTTTCAAAGGGGGTCAAAGTTTAACAATATCAAATAGTTGAGGAGAAATTTTGGAGCTTTTCCGTAGTTATTAATGATGTATAACATAGTAAAAAGGTGCCCCATATAACAAAAATGTTAGTCTATTTGTGTACACTGTATGTTTACTATATTCTTTCTTTAGATCAGAGAAATTCTATATGATAGTTTACTCTTTCTATGGGTACAGCTATTACTGTTTTAATGGTCAAGGTTTGAATTCCAAACCGTCTATATTCTCTTAGTCTTCAAGTGAGGACTTGTGTATTACTGTACATGTTAATAGATGATTGCAAATCGAAAAATTGTTTTATAAATAATGGTTCTGCGATAGTAGCTTTCTTTTAACTTAGATGTTGACATTTACTGATAACGTTGAAGTTGTAGTTTGTGGTCTTGCATGTGATTTTAAATGTGTTTCTGTCTTTTACAGGGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACGATTAATGGAGATGATTTGATATGGTCACTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGTACAGAGAGGTAATTGCAGTTTCTCCTCAGTTACTGATGATAAGTAAGCTTTGATAAATGAAGAAATCTTGATATTCTTGTGCGTGTGTTTATAATCGAGAACTAAAGAGAGAGAATAGTTCTTTTCTGCTCATCTGGAAGATTTTCTGTGTATCAGTGGTCTATATGAACTTCCTCTGTAGTTTTGAAGAACTTCTATTTTACCCCGTGTTATTATCTGATTATCAACTGATCAATGTCTCTTTTTCTGGTGATGAATCATTCTATTTGCTGGTCTGTGGGCTAATCATGGTATTGCAGATGGAGGTATGCATTGCTTCCCCGCATCAATGATATAGAGTTGCTTATTGTCTTTACCTCTGATATGTCACTAGCTATGCCTTGGGGATTGTTTCTAATGTCAGGGAGACACCAAGGGATCTTCTAGAGCTGGAGATACGTCTGCCAGAAACGATATAGTTGGAAGTCAGCTCAGTCCCGGTACACAGGTAAGAGGGTACCAAACTCTATTCACCATGTTCTGGTAATCTCAACCCTTATAGAAATTTAAGTAAATAGGTGTTACTATTTTGACTCCTATTTTTCGTGGACAATGGCAGTTTGTCTATGATGGGTCTTTTTCACAAGGCTTTGACTATGGGAACTCCCAAATGTGAATTTCCTAGTAAGTGCTTCTTCATTCTCTTCATACTAACCTTGCTTCTCTCTTTTGTTTTCTTTTAGCCTTTATTTATAACATCTTTTCATTGAGGAAAACCATTGGTTATCATCCTTTTATTAATTTTGATTTTCCATTGGAGTTGATTAGTTCCTGTATGTACCCTATGATGGCCCCCTTTCCTCCCCCACTATTAATTTATATATGAGGTGCACACGGAAATATTTAAATAAGAGACATTTACCTTTTTACATTCTTTAGGGCGAGATGAACAAATATCGAGCTAAACTTTCTTTAACTTGATCTCTTGTTTTTTTAACAAGTAAACAAGCAACAAAGGCAAGAAACTAGATCTGTCTAGGTACAGTGAAGCTACTAGAGTGTAATTGTTCCTTATAAATCTGGTAAGGAGTTGAGCAAGAGTAAAATGTCTGTAGTATACATCTTTAATATACATTAGAGGGCTAATATTTGCAACTGTTCTATTTTAAGAGACGTACTGTAACAAATACTAGGTTTAATTGATTGCAGAGAAGACTATAGTTTGGACAATGGGTAGATTAAAATTGGTGTTCATCGAGCTTCCTACCTCTCAAAAAGAGAGGGGTTGGGGAGATGGCTGCCTACCTCTCAATAGAGTGTATTAAGGTAAGATAAGTTGAAGCATATTTTTTGGGGAACTACAAATAAAAACTGTGATTTGATTTGTGTTAAGATTTGCATACGCTCTACTTTTTCCAGACCCCACTTATGGGATTACACCGGGAATGCTTCTTGTGGTTGTTGTTATACAAATACAAACTGTAAATTAGTATTAACATGAATGAAGAAGATTCTGTTGTGCGGAACAGAACTTTGATACTCTTGCTTCTCTGTTACTGTCTTGATAGTTGAATTCAAGTGCTGATTATGTTTGGTCGATTTGCAGTATTACAACGGTGCTGATGCGAGTATCTTCTGCCTAAAGTTCTTGTTTATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATCCTGCAAATCTTGAATTTAGCCATACTGCAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTAATTTGTTTTTTTTTGTTGTAAACTGAGAGCAATCTTCTTTTT</genome_strand>
        <mrna_strand>GGACAGATACCTTCCGATAGCGAACATCGGTCGTATCATGAAAAAAGGATTGCCTGCTAATGCTAAGATAGCTAAGGAAGCTAAAGATACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATCACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACAATTAATGGAGATGATTTGGTATGGTCTTTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGTACAGAGAG...................................................................................................................................................................................................................................................................................................ATGGAGGTATGCATTGCTTCCCCGCATCAATGATATAGAGTTGCTTTTTGTCTTTACCTCTGATATGTCACTAGCTATGCCTTGGGGATTGTTTCTAATGTCAGGGAGACACCAAGGGATCTTCTAGGGCTGGAGATACGTCTGCTAGAAACGATATAGTTGGAGGTCAGCTCAGTCCAACTACACAG...............................................................................................................TTTGTCTATGATGGGTCTTTTTCCCAAGGCTTCGACTATGGGAACTCCCAAATGTGAATTTCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTACAACGGTGCTGATGCGAGTATCTTCTGCCTTCCGTTCATGTTGATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATGCTGCAAATCTTGAATTTAGCCATACAACAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTGAATTGGATTTTATTGTTGTAAACTGAGAGCAATC-TCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615739" ref_strand="-" ref_description="SGN-E615739 [65541]">
      <seq>taaagatactgttcaggaatgtgtttctgagttcatcagcttcatcactagcgaggcaagtgacaagtgtcaaaaagagaagagaaagacaattaatggagatgatttggtatggtctttgaccaccttaggatttgaggactacattgagccactaaaggcctatttgattaggtacagagagatggagggagacaccaagggatcttctagggctggagatacgtctgctagaaacgatatagttggaggtcagctcagtccaactacacagtttgtctatgatgggtctttttcccaaggcttcgactatgggaactcccaaatgtgaatttctaaaattacaacggtgctgatgcgagtatcttctgccttccgttcatgttgatctatgtactaagccattcaatggttgctgataatatatgtttgaaagctctaggaaccgaaagtatgctgcaaatcttgaatttagccatacaacaaaacactttattttctgaacttctcttccagtactttgatgctctgtacatgtaacatgtaatttggcttttattgttgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="3420" stop="7989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3720" g_stop="3773" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3774" i_stop="5753" i_length="1980">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5754" g_stop="5883" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="184" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5884" i_stop="6174" i_length="291">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6175" g_stop="6180" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="190" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6181" i_stop="6278" i_length="98">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6279" g_stop="6362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="274" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6363" i_stop="6473" i_length="111">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6474" g_stop="6538" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="339" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6539" i_stop="7460" i_length="922">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.954" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7461" g_stop="7693" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="572" r_length="233" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E615739" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615739" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3720" e_stop="3773"/>
          <exon e_start="5754" e_stop="5883"/>
          <exon e_start="6175" e_stop="6180"/>
          <exon e_start="6279" e_stop="6362"/>
          <exon e_start="6474" e_stop="6538"/>
          <exon e_start="7461" e_stop="7693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATACTGTCCAGGAATGTGTTTCTGAGTTCATCAGTTTCATCACTAGTGAGTAAGTGTTTCTTTCACTTTTACTTGTTCAAATACACATGAATATTTTACCATATTAATACAATTGATGTGTAATTTAGTGTTAAATCTTGTGATATGATTTGGAAATAAGTAATCGATGTTGAAGGTAAAAGATAAAAAAATGTTTTCCATGCTAAAAGTGAAAATATATTTTAGTATAGCGGAGAAATAAAAATGAATTGAGGGAGTATAATGCTAGGATTTGAACTTTATGGATTCTAATTTAGTCCAGTGATATAAGCGTTCCTAATTGGGTTCTAAATTTAATTTTGTAGTTATTAGTGAATCTTAATACAATCTGGGTTGGAACCCATCGGCTTGTAGCTCCACCATGTGATATTAGGAAAATTGACATGCTCCCATTCCCTTTAGATTGATAATGGGATAAATACAGGTTAAAAGTTCATATTGTGAAAGCACATCCAAGTGTTCAGGAGTGTGTCTCTGAGTTCATGAGTTTGATCACCAGCGAGCAACTGTTATGTTGTTGTATTTGAACTTTATGAATTCGAAATTTTAGTATAGTGACATCAAATGCTACTAACTGGGTCCTAAACTTAATTTTTATACGTATGTATGTGTGTTTCTTAATATAAATACCGCATTTGAACTAAAGCAATTGGGTTTGGAACCCATTTGTTGGCTTGTAATCCTCCCCTATACTAATAGGAAAATCAATATACTTCCATACCCTTAGATTGATAATGGAATAAACACAGGTGGTGAGTTTTGTTAGTCAGAACACATCCAAGTGCTTCAATGAAGAGAAAAGAACAAATCAGTTAAGAGCGACATCATACAGTAGTCAATACAAGTTAAGAGATTTAATAGCTTCATATACCTAAGATTTATTTGAAATTTGATGTGTTATTAGTTCATTGTACTTACAAATGTTTAAATTTGAAGTGGTATTCTTGAATCTCGGAGTTCATTGTGCTCGGAGTCTCTTTTTAGGTTTAAAATATGGTGGAATCCAGATTTTTTTTGCAACTGTGTTCTCTACACATATTTTCTATGCGTATGGATGCAACTTAGATGATTTGCTATACTTGTTGAAACTACCATGTTTGATGTTCTTATGGATACGACTTAAATGATTTGCGATATATGTTGAAAAATTGTAGTGCATCTACATTTATGAGCTTCAAATTTTTTTGAACAAGAACAAAACAATGTTCGTAATTATTTTGAGCATATCGGAAACATTTGTAGGAAGAGTGTAAGTACTGTTGGTAAGGGCCTAAGAGGTGAGAAAGAGAGTCTGTGCGAGGGATGGAAGGAAACTTTTTTTTGGAGGCATTTGGGGGAGGGAAGTAGAGAAGAAAAAGAGGACAAAATGATTGGGCCCACTATGGGTGACAGAGGAATTTGGAGAAGTGTACATTCACATGTAATTCCACACCACATGAAGAATAGCACAAGTTGAGATTAAATGGTCTAGGTTGATACCAGTTGTCAAAGAATGGCAAATATGATACGAAAGGGTGACAAGGGTCTTTTTATTGCCAACTTTCAAAGGGGGTCAAAGTTTAACAATATCAAATAGTTGAGGAGAAATTTTGGAGCTTTTCCGTAGTTATTAATGATGTATAACATAGTAAAAAGGTGCCCCATATAACAAAAATGTTAGTCTATTTGTGTACACTGTATGTTTACTATATTCTTTCTTTAGATCAGAGAAATTCTATATGATAGTTTACTCTTTCTATGGGTACAGCTATTACTGTTTTAATGGTCAAGGTTTGAATTCCAAACCGTCTATATTCTCTTAGTCTTCAAGTGAGGACTTGTGTATTACTGTACATGTTAATAGATGATTGCAAATCGAAAAATTGTTTTATAAATAATGGTTCTGCGATAGTAGCTTTCTTTTAACTTAGATGTTGACATTTACTGATAACGTTGAAGTTGTAGTTTGTGGTCTTGCATGTGATTTTAAATGTGTTTCTGTCTTTTACAGGGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACGATTAATGGAGATGATTTGATATGGTCACTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGTACAGAGAGGTAATTGCAGTTTCTCCTCAGTTACTGATGATAAGTAAGCTTTGATAAATGAAGAAATCTTGATATTCTTGTGCGTGTGTTTATAATCGAGAACTAAAGAGAGAGAATAGTTCTTTTCTGCTCATCTGGAAGATTTTCTGTGTATCAGTGGTCTATATGAACTTCCTCTGTAGTTTTGAAGAACTTCTATTTTACCCCGTGTTATTATCTGATTATCAACTGATCAATGTCTCTTTTTCTGGTGATGAATCATTCTATTTGCTGGTCTGTGGGCTAATCATGGTATTGCAGATGGAGGTATGCATTGCTTCCCCGCATCAATGATATAGAGTTGCTTATTGTCTTTACCTCTGATATGTCACTAGCTATGCCTTGGGGATTGTTTCTAATGTCAGGGAGACACCAAGGGATCTTCTAGAGCTGGAGATACGTCTGCCAGAAACGATATAGTTGGAAGTCAGCTCAGTCCCGGTACACAGGTAAGAGGGTACCAAACTCTATTCACCATGTTCTGGTAATCTCAACCCTTATAGAAATTTAAGTAAATAGGTGTTACTATTTTGACTCCTATTTTTCGTGGACAATGGCAGTTTGTCTATGATGGGTCTTTTTCACAAGGCTTTGACTATGGGAACTCCCAAATGTGAATTTCCTAGTAAGTGCTTCTTCATTCTCTTCATACTAACCTTGCTTCTCTCTTTTGTTTTCTTTTAGCCTTTATTTATAACATCTTTTCATTGAGGAAAACCATTGGTTATCATCCTTTTATTAATTTTGATTTTCCATTGGAGTTGATTAGTTCCTGTATGTACCCTATGATGGCCCCCTTTCCTCCCCCACTATTAATTTATATATGAGGTGCACACGGAAATATTTAAATAAGAGACATTTACCTTTTTACATTCTTTAGGGCGAGATGAACAAATATCGAGCTAAACTTTCTTTAACTTGATCTCTTGTTTTTTTAACAAGTAAACAAGCAACAAAGGCAAGAAACTAGATCTGTCTAGGTACAGTGAAGCTACTAGAGTGTAATTGTTCCTTATAAATCTGGTAAGGAGTTGAGCAAGAGTAAAATGTCTGTAGTATACATCTTTAATATACATTAGAGGGCTAATATTTGCAACTGTTCTATTTTAAGAGACGTACTGTAACAAATACTAGGTTTAATTGATTGCAGAGAAGACTATAGTTTGGACAATGGGTAGATTAAAATTGGTGTTCATCGAGCTTCCTACCTCTCAAAAAGAGAGGGGTTGGGGAGATGGCTGCCTACCTCTCAATAGAGTGTATTAAGGTAAGATAAGTTGAAGCATATTTTTTGGGGAACTACAAATAAAAACTGTGATTTGATTTGTGTTAAGATTTGCATACGCTCTACTTTTTCCAGACCCCACTTATGGGATTACACCGGGAATGCTTCTTGTGGTTGTTGTTATACAAATACAAACTGTAAATTAGTATTAACATGAATGAAGAAGATTCTGTTGTGCGGAACAGAACTTTGATACTCTTGCTTCTCTGTTACTGTCTTGATAGTTGAATTCAAGTGCTGATTATGTTTGGTCGATTTGCAGTATTACAACGGTGCTGATGCGAGTATCTTCTGCCTAAAGTTCTTGTTTATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATCCTGCAAATCTTGAATTTAGCCATACTGCAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTAATTTGTTTTTTTTTGTTGTAAACTGA</genome_strand>
        <mrna_strand>TAAAGATACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATCACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACAATTAATGGAGATGATTTGGTATGGTCTTTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGTACAGAGAG...................................................................................................................................................................................................................................................................................................ATGGAG..................................................................................................GGAGACACCAAGGGATCTTCTAGGGCTGGAGATACGTCTGCTAGAAACGATATAGTTGGAGGTCAGCTCAGTCCAACTACACAG...............................................................................................................TTTGTCTATGATGGGTCTTTTTCCCAAGGCTTCGACTATGGGAACTCCCAAATGTGAATTTCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTACAACGGTGCTGATGCGAGTATCTTCTGCCTTCCGTTCATGTTGATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATGCTGCAAATCTTGAATTTAGCCATACAACAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTAATTTGGCTTTTATTGTTGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427871" ref_strand="-" ref_description="SGN-E427871 [STM-49-C2]">
      <seq>gattaggtacagagagatggagggagacaccaagggatcttctagggctggagatacgtctgctagaaacgatatagttggaggtcagctcagtccaactacacagtttgtctatgatgggtctttttcccaaggcttcgactatgggaactcccaaatgtgaatttctaaaattacaacggtgctgatgcgagtatcttctgccttccgttcatgttgatctatgtactaagccattcaatggttgctgataatatatgtttgaaagctctaggaaccgaaagtatgctgcaaatcttgaatttagccatacaacaaaacactttattttctgaacttctcttccagtactttgatgctctgtacatgtaacatgtaatttggcttttattgttgtaaactgagagcaatcttctttttctgcaaaacttgctaggttctatgggtgagtgaccttaactttttgtatgaagttgcttttaaggcattgctttggaagtttnccgaaaaaaagggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="5977" stop="8101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6175" g_stop="6180" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="22" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6181" i_stop="6278" i_length="98">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6279" g_stop="6362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="106" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6363" i_stop="6473" i_length="111">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6474" g_stop="6538" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="171" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6539" i_stop="7460" i_length="922">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.954" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7461" g_stop="7809" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="519" r_length="348" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E427871" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427871" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6175" e_stop="6180"/>
          <exon e_start="6279" e_stop="6362"/>
          <exon e_start="6474" e_stop="6538"/>
          <exon e_start="7461" e_stop="7809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGTATGCATTGCTTCCCCGCATCAATGATATAGAGTTGCTTATTGTCTTTACCTCTGATATGTCACTAGCTATGCCTTGGGGATTGTTTCTAATGTCAGGGAGACACCAAGGGATCTTCTAGAGCTGGAGATACGTCTGCCAGAAACGATATAGTTGGAAGTCAGCTCAGTCCCGGTACACAGGTAAGAGGGTACCAAACTCTATTCACCATGTTCTGGTAATCTCAACCCTTATAGAAATTTAAGTAAATAGGTGTTACTATTTTGACTCCTATTTTTCGTGGACAATGGCAGTTTGTCTATGATGGGTCTTTTTCACAAGGCTTTGACTATGGGAACTCCCAAATGTGAATTTCCTAGTAAGTGCTTCTTCATTCTCTTCATACTAACCTTGCTTCTCTCTTTTGTTTTCTTTTAGCCTTTATTTATAACATCTTTTCATTGAGGAAAACCATTGGTTATCATCCTTTTATTAATTTTGATTTTCCATTGGAGTTGATTAGTTCCTGTATGTACCCTATGATGGCCCCCTTTCCTCCCCCACTATTAATTTATATATGAGGTGCACACGGAAATATTTAAATAAGAGACATTTACCTTTTTACATTCTTTAGGGCGAGATGAACAAATATCGAGCTAAACTTTCTTTAACTTGATCTCTTGTTTTTTTAACAAGTAAACAAGCAACAAAGGCAAGAAACTAGATCTGTCTAGGTACAGTGAAGCTACTAGAGTGTAATTGTTCCTTATAAATCTGGTAAGGAGTTGAGCAAGAGTAAAATGTCTGTAGTATACATCTTTAATATACATTAGAGGGCTAATATTTGCAACTGTTCTATTTTAAGAGACGTACTGTAACAAATACTAGGTTTAATTGATTGCAGAGAAGACTATAGTTTGGACAATGGGTAGATTAAAATTGGTGTTCATCGAGCTTCCTACCTCTCAAAAAGAGAGGGGTTGGGGAGATGGCTGCCTACCTCTCAATAGAGTGTATTAAGGTAAGATAAGTTGAAGCATATTTTTTGGGGAACTACAAATAAAAACTGTGATTTGATTTGTGTTAAGATTTGCATACGCTCTACTTTTTCCAGACCCCACTTATGGGATTACACCGGGAATGCTTCTTGTGGTTGTTGTTATACAAATACAAACTGTAAATTAGTATTAACATGAATGAAGAAGATTCTGTTGTGCGGAACAGAACTTTGATACTCTTGCTTCTCTGTTACTGTCTTGATAGTTGAATTCAAGTGCTGATTATGTTTGGTCGATTTGCAGTATTACAACGGTGCTGATGCGAGTATCTTCTGCCTAAAGTTCTTGTTTATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATCCTGCAAATCTTGAATTTAGCCATACTGCAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTAATTTGTTTTTTTTTGTTGTAAACTGAGAGCAATCTTCTTTTTCTGCAAAATTTGCTTGGTTCTAAGGGTGAGTGACCTTAACTTTTTGTATGAAGTTACTTTTAAGACATTTCTTTTGGAAGTTTACAGAAATATTCCTGGT</genome_strand>
        <mrna_strand>ATGGAG..................................................................................................GGAGACACCAAGGGATCTTCTAGGGCTGGAGATACGTCTGCTAGAAACGATATAGTTGGAGGTCAGCTCAGTCCAACTACACAG...............................................................................................................TTTGTCTATGATGGGTCTTTTTCCCAAGGCTTCGACTATGGGAACTCCCAAATGTGAATTTCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTACAACGGTGCTGATGCGAGTATCTTCTGCCTTCCGTTCATGTTGATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATGCTGCAAATCTTGAATTTAGCCATACAACAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTAATTTGGCTTTTATTGTTGTAAACTGAGAGCAATCTTCTTTTTCTGCAAAACTTGCTAGGTTCTATGGGTGAGTGACCTTAACTTTTTGTATGAAGTTGCTTTTAAGGCATTGC-TTTGGAAGTTTNCCGAAAAAAAGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234125" ref_strand="+" ref_description="SGN-E234125 [cLEL-8-I19](-)">
      <seq>aaacgtgacccaaaggagcacctggagaactataaaagacgtttcttgtctcagctctgatgagcattacacagtatccacaattatgcaatgatcactgctgagttctgaacagtttatatgtgcagggggctgtctttttcattgtattagaatatgattaatctcagcagaaaattccacatatggaatatatagctgcacagtgaagttgtttccatatgatctatatataccttacagatttgagccgtataagcagcattagagtagactgtctacctcacaattcttcatgtgtggcccttttcctaaaccctactaaaaggggatgctttgtgcaccgggatgccctttagaaatatgcagctgcacagtaactatttctaatcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="8747" stop="7500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8447" g_stop="8400" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8399" i_stop="8161" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8160" g_stop="7799" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="410" r_length="362" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E234125" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8447" e_stop="8400"/>
          <exon e_start="8160" e_stop="7799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGACCCAAAGGAGCACCTGGAGAACTATAAAAGACGTTTCTTGGTATATTGCTTGTCTACTGTTTTTATTTTTGTTATTTCTAAGACAGTCACTCAACTAATAATGTATTATCTCAAAAGATCACTTCCTTTATTAAAAAAAAAAATAGTATCAAGAAAAAGGACGACATTTTTAGATAATAAGTAACTATTAAGTGAGTGACCATACAAAAATCTAACCCATTTTTATTTGGAAATTGTTTTATAACCATACCACCATTTCTTTCTCTTTCTTTGTTGCAGTCTCAGCTCTGATGAGCATTACACAGTATCCACAATTATGCAATGATCACTGCTGAGTTCTGAACAGTTTATATGTGCAGGGGGCTGTCTTTTTCATTGTATTAGAATATGATTAATCTCAGCAGAAAATTCCACATATGGAATATATAGCTGCACAGTGAAGTTGTTTCCATATGATCTATATATACCTTACAGATTTGAGCCGTATAAGCAGCATTAGAGTAGACTGTCTACCTCACAATTCTTCATGTGTGGCCCTTTTCCTAAACCCTACTAAAAGGGGATGCTTTGTGCACCGGGATGCCCTTTAGAAATATGCAGCTGCACAGTAACTATTTCTAATCATAAAACACCAGGAATAT</genome_strand>
        <mrna_strand>AAACGTGACCCAAAGGAGCACCTGGAGAACTATAAAAGACGTTTCTTG...............................................................................................................................................................................................................................................TCTCAGCTCTGATGAGCATTACACAGTATCCACAATTATGCAATGATCACTGCTGAGTTCTGAACAGTTTATATGTGCAGGGGGCTGTCTTTTTCATTGTATTAGAATATGATTAATCTCAGCAGAAAATTCCACATATGGAATATATAGCTGCACAGTGAAGTTGTTTCCATATGATCTATATATACCTTACAGATTTGAGCCGTATAAGCAGCATTAGAGTAGACTGTCTACCTCACAATTCTTCATGTGTGGCCCTTTTCCTAAACCCTACTAAAAGGGGATGCTTTGTGCACCGGGATGCCCTTTAGAAATATGCAGCTGCACAGTAACTATTTCTAATCATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326213" ref_strand="+" ref_description="SGN-E326213 [cTOC-16-L19]">
      <seq>tagaaagaagaaaaacacagttctgccagagagaggggagagataaggagtacaacgcattaacgaaccaaatcaccaaaacctaaaggagaaaaatggcagcttcgagcattgggcatcagattcatattaatgtcaattctccaattcttcttcctttgagaaccaatttcagttcactctctttcactttctctaatgctagatacccattaaaatggaatcacattggttgccccaaaatttgtgctctaccagctgtttcaataattgcttctggaagttctagagagatgcttcctcctgcccttgattcctcttcagagccaccagcaatctttgatggaactccaaagctttatatctcttactcatgcccatatgcccaacgtacgtggattgctagaaattgtaaggcgctgcaggaagagattaagttggttcctattgatctaaagaacaggccagattggtataaggagaaggtttatccagcaaataaggtaccatcactggaacacaacaatgaagttaagggagagagtatggatctcattagatatattgacagtaactttgaagggccatcacttttccctgatgatccttccaagagagaattcgcagaagaattattctcctactttgactccttttacaaagctgtaatttcgtctttaaagggagacaaaataaatgatgccattgcagcatttgattccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="13447" stop="9480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13147" g_stop="12868" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12079" g_stop="12005" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="355" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11407" g_stop="11347" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="416" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11346" i_stop="11239" i_length="108">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11238" g_stop="11152" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="503" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11151" i_stop="10148" i_length="1004">
            <donor d_prob="0.292" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10147" g_stop="10049" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="602" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10048" i_stop="9974" i_length="75">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9973" g_stop="9871" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="705" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9870" i_stop="9801" i_length="70">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9800" g_stop="9780" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="726" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E326213" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13147" e_stop="12868"/>
          <exon e_start="12079" e_stop="12005"/>
          <exon e_start="11407" e_stop="11347"/>
          <exon e_start="11238" e_stop="11152"/>
          <exon e_start="10147" e_stop="10049"/>
          <exon e_start="9973" e_stop="9871"/>
          <exon e_start="9800" e_stop="9780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGGGTACTCTCTTTCTCTATTTTTTTTTAGCTATTTTCTGGAATTCTCGTGTTCTTATAGTTTTAAGGTGTGTTTGGTTGGTAAGATGCAAAATGTAATTCATGTAAAATATTTATCCGGAAAATAAGTTATTTTTTTACTTATTTTTGACATATCGTCGAAAACACCATCTATGTATTAAAACACATTTCAAATAATAAATTGTTTACTTTTATCATCTATCGCTTGCAAAAATGAAACAATTGATAGTTATTATGTGAAACTCGAAAAAGGATTACATTGAGTTAATTTTTTGATTTTTTTTTTACAAAAAAACTATTGAGTCCTTATCTTTTTTATGAAGGTTGGTAAGTGAACTAGAAAATATTGTTTCAAATGTAATCTAAAAAAATATTTGTTGTTTCCTTTATTTTGAGTTATCATATTATTTGTTGTTTGTTTATGTTATCTTCTCTGTTCTCTAGCTTCACAAGGTAGGAGTAAGGTTGCGTACATATTATGCTCTCCAGTCCCACTTATAGGATACATTTAGTATGTTGTTGTAATTTCTTCTACTCTGCTTTCTTACTTGTCTTCAAACATCGATCTCGGATGGTCACTCAACTAAGAGCTATCATCTCGGAAAATCACCTTCGTAGTTGAAGGAAAATTGAAATCAAGAACAAAAGAGACCTTTTGGGATAATATCTATTAGTTAAGTGATCATCTGTGAAATCACTCGATTCTAAAAGGCGCAACTTCTATTGGGTTCAACAGTTTTGGTTAGTTCTAACAATTCCTTGTTTGTTCAGAAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAAGTTAGTTGCTCTTTTACTTTTTTGTTTGTCTCAAATGTGATTGTTGCATTTCTATTCTTCTTCTTTGTATGATATGATATGGTTAAATACTTGAATTATATACAACTAAGTCACTTAACTATTCTTTTGTCATGTTAAAAGTAACTAACACCTACAATAATGAAGTCACTAAACATTATCCTCTATAAAGTACTAAAATTTATCCATTGAAGTGACTTTTGCTGATATAGTGCATAAAAATCTATGACTTTACTGTTATAATGGATAAAATTCTATGTCGGATATTATATGGTTAGTCCAAATATGGTTCCTGACCTTTATACACTACAACGATAATGTCTATTGTTTTGTCGCATTAAACTAGCTAATAATTGAACCTTCTCTGCTATAACATTAAAGTTGCTAAACATTATCCACTATGAAGTAAAACATACCCATCAAGGTGACTTTTTTGTTATGGCGGATACAGTTTTGTGATGACAGTTTTGTAACTTTACTTTTCTAGTTGGTAAAATTCAGTGAACATATGTGAAATCAGCCTGATAAATTAGTTTATCTCCCTTGTGATAGTCAATTTATTCATTTTCTTGGTTGAAGGCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAGGTTTGTATGGAGCAACTATTGATCTAGAATTTGGTTAAATTTAGGGTGCACTCGAATTTTTCCAGTACCTATAAAGTTAGTTGATTTATATTCTTGTATGTGAATCAGGCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAGGTGAAAGTGACATTATTGTTTCAAATAAATGGTGACAGTTATTCAAAGGCAATATACATAAATACACTGTCAAACTTGGCCTCAACTGGAAAGTAAATGCTCCAACTTTGATTATGCACATCTAGGCACCTCAACTCGTTTCCATTGTGTCAGTTGAACACTCCAACTTACAAAATGGTCATCTAGACACCAAAATTTATTTTCCACGACAGCGTGGACAGTGTCCATGACACAGTGGGGACGAGTTAGAGTGTATAGCTGCCAGTTGAGACCAAGTTGAGGTGGCTACATGTGGTCTCTCAAAGTTGAAGTGCTTAATTATCAGCTAAGGCCAAGTTTGAGTATATGTTTTATGTGTTATGCCGTTATTCAAATGGTCTATAGTCTCTGCTTTCTTTGAAGTTCTGCAGTCCAGGCAGAAGGTTTATCCGTAATAGAGTTAAGCTGTTCTGCTTGTTGTTTTAGCACAGTAAATCTATAAACCAGCTTTATCAATTCCTAAATGATAAGTTGAAACCAATGATGTCTCTCTGTCCCTCTCATGTGTGTGTATTTGAGGTTCCCTTCTAATATATTTTTATCTGCGATCTAAGGGTTCGTCAATCATTTTGCTTACATATCGTGAACTTTAAAAATTCGCAGCAGCATAGGAACCACAGAACCCCCTACTAGTAAAAATGTCCCTTCTGTCCATATCTCTACTGATTCAGATGGCAAGGACCCGTTGTGGCTTTAGCCCGCTTCTTGTTACTAAAATGATTGTGTATTTATGTGTGTTTAGACTCTTCGAGTTTAATTAATTTCAAGTTGGTTAAACTGAAAGGCCCCAGAAAGAAAGTTTAGCTTATCTATGAACGATTTGATTGATTAAAGGTAAATGAGTCGATTTAGGTCTGCTAATTGACAGGTTTAGGTGGCAAAATGTACATATACTAGTTCATTGCATTACACTATGCTGTCACTTTGTTGTGCTACTCCGAGAACTTAATTCTTTTCTTTCACAGGTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGATGTAAGTTCTTGATAGGATTTCTTTTGAGATTTTCCTACTTTTCCCGTCTCTCAACTTGTGTGCTCGCTAATGTAGGATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGAAGACAAAATAAATGATGCCAGTAAGTTTCAACTCCTATATAATTTACATATTTGCTTTGCGGTAGAATCATAATAGACGAGTTGGTGTAGTTGCAGCATTTGATTCCATTG</genome_strand>
        <mrna_strand>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAG............................................................................................................GCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGAT...........................................................................GATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGGAGACAAAATAAATGATGCCA......................................................................TTGCAGCATTTGATTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320977" ref_strand="+" ref_description="SGN-E320977 [cTOB-13-O8]">
      <seq>aggagaaaaatggcagcttcgagcattgggcatcagattcatattaatgtcaattctccaattcttcttcctttgagaaccaatttcagttcactctctttcactttctctaatgctagatacccattaaaatggaatcacattggttgccccaaaatttgtgctctaccagctgtttcaataattgcttctggaagttctagagagatgcttcctcctgcccttgattcctcttcagagccaccagcaatctttgatggaactccaaagctttatatctcttactcatgcccatatgcccaacgtacgtggattgctagaaattgtaaggcgctgcaggaagagattaagttggttcctattgatctaaagaacaggccagattggtataaggagaaggtttatccagcaaataaggtaccatcactggaacacaacaatgaagttaagggagagagtatggatctcattagatatattgacagtaactttgaagggccatcacttttccctgatgatccttccaagagagaattcgcagaagaattattctcctactttgactccttttacaaagctgtaatttcgtctttaaaggaagacaaaataaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="13361" stop="9574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13061" g_stop="12868" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12079" g_stop="12005" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="269" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11407" g_stop="11347" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="330" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11346" i_stop="11239" i_length="108">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11238" g_stop="11152" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="417" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11151" i_stop="10148" i_length="1004">
            <donor d_prob="0.292" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10147" g_stop="10049" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="516" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10048" i_stop="9974" i_length="75">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9973" g_stop="9874" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="616" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E320977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13061" e_stop="12868"/>
          <exon e_start="12079" e_stop="12005"/>
          <exon e_start="11407" e_stop="11347"/>
          <exon e_start="11238" e_stop="11152"/>
          <exon e_start="10147" e_stop="10049"/>
          <exon e_start="9973" e_stop="9874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGGGTACTCTCTTTCTCTATTTTTTTTTAGCTATTTTCTGGAATTCTCGTGTTCTTATAGTTTTAAGGTGTGTTTGGTTGGTAAGATGCAAAATGTAATTCATGTAAAATATTTATCCGGAAAATAAGTTATTTTTTTACTTATTTTTGACATATCGTCGAAAACACCATCTATGTATTAAAACACATTTCAAATAATAAATTGTTTACTTTTATCATCTATCGCTTGCAAAAATGAAACAATTGATAGTTATTATGTGAAACTCGAAAAAGGATTACATTGAGTTAATTTTTTGATTTTTTTTTTACAAAAAAACTATTGAGTCCTTATCTTTTTTATGAAGGTTGGTAAGTGAACTAGAAAATATTGTTTCAAATGTAATCTAAAAAAATATTTGTTGTTTCCTTTATTTTGAGTTATCATATTATTTGTTGTTTGTTTATGTTATCTTCTCTGTTCTCTAGCTTCACAAGGTAGGAGTAAGGTTGCGTACATATTATGCTCTCCAGTCCCACTTATAGGATACATTTAGTATGTTGTTGTAATTTCTTCTACTCTGCTTTCTTACTTGTCTTCAAACATCGATCTCGGATGGTCACTCAACTAAGAGCTATCATCTCGGAAAATCACCTTCGTAGTTGAAGGAAAATTGAAATCAAGAACAAAAGAGACCTTTTGGGATAATATCTATTAGTTAAGTGATCATCTGTGAAATCACTCGATTCTAAAAGGCGCAACTTCTATTGGGTTCAACAGTTTTGGTTAGTTCTAACAATTCCTTGTTTGTTCAGAAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAAGTTAGTTGCTCTTTTACTTTTTTGTTTGTCTCAAATGTGATTGTTGCATTTCTATTCTTCTTCTTTGTATGATATGATATGGTTAAATACTTGAATTATATACAACTAAGTCACTTAACTATTCTTTTGTCATGTTAAAAGTAACTAACACCTACAATAATGAAGTCACTAAACATTATCCTCTATAAAGTACTAAAATTTATCCATTGAAGTGACTTTTGCTGATATAGTGCATAAAAATCTATGACTTTACTGTTATAATGGATAAAATTCTATGTCGGATATTATATGGTTAGTCCAAATATGGTTCCTGACCTTTATACACTACAACGATAATGTCTATTGTTTTGTCGCATTAAACTAGCTAATAATTGAACCTTCTCTGCTATAACATTAAAGTTGCTAAACATTATCCACTATGAAGTAAAACATACCCATCAAGGTGACTTTTTTGTTATGGCGGATACAGTTTTGTGATGACAGTTTTGTAACTTTACTTTTCTAGTTGGTAAAATTCAGTGAACATATGTGAAATCAGCCTGATAAATTAGTTTATCTCCCTTGTGATAGTCAATTTATTCATTTTCTTGGTTGAAGGCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAGGTTTGTATGGAGCAACTATTGATCTAGAATTTGGTTAAATTTAGGGTGCACTCGAATTTTTCCAGTACCTATAAAGTTAGTTGATTTATATTCTTGTATGTGAATCAGGCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAGGTGAAAGTGACATTATTGTTTCAAATAAATGGTGACAGTTATTCAAAGGCAATATACATAAATACACTGTCAAACTTGGCCTCAACTGGAAAGTAAATGCTCCAACTTTGATTATGCACATCTAGGCACCTCAACTCGTTTCCATTGTGTCAGTTGAACACTCCAACTTACAAAATGGTCATCTAGACACCAAAATTTATTTTCCACGACAGCGTGGACAGTGTCCATGACACAGTGGGGACGAGTTAGAGTGTATAGCTGCCAGTTGAGACCAAGTTGAGGTGGCTACATGTGGTCTCTCAAAGTTGAAGTGCTTAATTATCAGCTAAGGCCAAGTTTGAGTATATGTTTTATGTGTTATGCCGTTATTCAAATGGTCTATAGTCTCTGCTTTCTTTGAAGTTCTGCAGTCCAGGCAGAAGGTTTATCCGTAATAGAGTTAAGCTGTTCTGCTTGTTGTTTTAGCACAGTAAATCTATAAACCAGCTTTATCAATTCCTAAATGATAAGTTGAAACCAATGATGTCTCTCTGTCCCTCTCATGTGTGTGTATTTGAGGTTCCCTTCTAATATATTTTTATCTGCGATCTAAGGGTTCGTCAATCATTTTGCTTACATATCGTGAACTTTAAAAATTCGCAGCAGCATAGGAACCACAGAACCCCCTACTAGTAAAAATGTCCCTTCTGTCCATATCTCTACTGATTCAGATGGCAAGGACCCGTTGTGGCTTTAGCCCGCTTCTTGTTACTAAAATGATTGTGTATTTATGTGTGTTTAGACTCTTCGAGTTTAATTAATTTCAAGTTGGTTAAACTGAAAGGCCCCAGAAAGAAAGTTTAGCTTATCTATGAACGATTTGATTGATTAAAGGTAAATGAGTCGATTTAGGTCTGCTAATTGACAGGTTTAGGTGGCAAAATGTACATATACTAGTTCATTGCATTACACTATGCTGTCACTTTGTTGTGCTACTCCGAGAACTTAATTCTTTTCTTTCACAGGTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGATGTAAGTTCTTGATAGGATTTCTTTTGAGATTTTCCTACTTTTCCCGTCTCTCAACTTGTGTGCTCGCTAATGTAGGATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGAAGACAAAATAAATGATG</genome_strand>
        <mrna_strand>AGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAG............................................................................................................GCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGAT...........................................................................GATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGAAGACAAAATAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283304" ref_strand="+" ref_description="SGN-E283304 [cLER-12-J15]">
      <seq>acgaaccaaatcaccaaaacctaaaggagaaaaatggcagcttcgagcattgggcatcagattcatattaatgtcaattctccaattcttcttcctttgagaaccaatttcagttcactctctttcactttctctaatgctagatacccattaaaatggaatcacattggttgccccaaaatttgtgctctaccagctgtttcaataattgcttctggaagttctagagagatgcttcctcctgcccttgattcctcttcagagccaccagcaatctttgatggaactccaaagctttatatctcttactcatgcccatatgcccaacgtacgtggattgctagaaattgtaaggcgctgcaggaagagattaagttggttcctattgatctaaagaacaggccagattggtataaggagaaggtttatccagcaaataaggtaccatcactggaacacaacaatgaagttaagggagagagtatggatctcattagatatattgacagtaactttgaagggccatcacttttccctgatgatccttccaagagagaattcgcagaagaattattctcctactttgactccttttacaaagctgtaatttcgtctttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="13385" stop="9594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13085" g_stop="12868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12079" g_stop="12005" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="293" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11407" g_stop="11347" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="354" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11346" i_stop="11239" i_length="108">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11238" g_stop="11152" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="441" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11151" i_stop="10148" i_length="1004">
            <donor d_prob="0.292" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10147" g_stop="10049" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10048" i_stop="9974" i_length="75">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9973" g_stop="9894" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="620" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E283304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13085" e_stop="12868"/>
          <exon e_start="12079" e_stop="12005"/>
          <exon e_start="11407" e_stop="11347"/>
          <exon e_start="11238" e_stop="11152"/>
          <exon e_start="10147" e_stop="10049"/>
          <exon e_start="9973" e_stop="9894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGGGTACTCTCTTTCTCTATTTTTTTTTAGCTATTTTCTGGAATTCTCGTGTTCTTATAGTTTTAAGGTGTGTTTGGTTGGTAAGATGCAAAATGTAATTCATGTAAAATATTTATCCGGAAAATAAGTTATTTTTTTACTTATTTTTGACATATCGTCGAAAACACCATCTATGTATTAAAACACATTTCAAATAATAAATTGTTTACTTTTATCATCTATCGCTTGCAAAAATGAAACAATTGATAGTTATTATGTGAAACTCGAAAAAGGATTACATTGAGTTAATTTTTTGATTTTTTTTTTACAAAAAAACTATTGAGTCCTTATCTTTTTTATGAAGGTTGGTAAGTGAACTAGAAAATATTGTTTCAAATGTAATCTAAAAAAATATTTGTTGTTTCCTTTATTTTGAGTTATCATATTATTTGTTGTTTGTTTATGTTATCTTCTCTGTTCTCTAGCTTCACAAGGTAGGAGTAAGGTTGCGTACATATTATGCTCTCCAGTCCCACTTATAGGATACATTTAGTATGTTGTTGTAATTTCTTCTACTCTGCTTTCTTACTTGTCTTCAAACATCGATCTCGGATGGTCACTCAACTAAGAGCTATCATCTCGGAAAATCACCTTCGTAGTTGAAGGAAAATTGAAATCAAGAACAAAAGAGACCTTTTGGGATAATATCTATTAGTTAAGTGATCATCTGTGAAATCACTCGATTCTAAAAGGCGCAACTTCTATTGGGTTCAACAGTTTTGGTTAGTTCTAACAATTCCTTGTTTGTTCAGAAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAAGTTAGTTGCTCTTTTACTTTTTTGTTTGTCTCAAATGTGATTGTTGCATTTCTATTCTTCTTCTTTGTATGATATGATATGGTTAAATACTTGAATTATATACAACTAAGTCACTTAACTATTCTTTTGTCATGTTAAAAGTAACTAACACCTACAATAATGAAGTCACTAAACATTATCCTCTATAAAGTACTAAAATTTATCCATTGAAGTGACTTTTGCTGATATAGTGCATAAAAATCTATGACTTTACTGTTATAATGGATAAAATTCTATGTCGGATATTATATGGTTAGTCCAAATATGGTTCCTGACCTTTATACACTACAACGATAATGTCTATTGTTTTGTCGCATTAAACTAGCTAATAATTGAACCTTCTCTGCTATAACATTAAAGTTGCTAAACATTATCCACTATGAAGTAAAACATACCCATCAAGGTGACTTTTTTGTTATGGCGGATACAGTTTTGTGATGACAGTTTTGTAACTTTACTTTTCTAGTTGGTAAAATTCAGTGAACATATGTGAAATCAGCCTGATAAATTAGTTTATCTCCCTTGTGATAGTCAATTTATTCATTTTCTTGGTTGAAGGCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAGGTTTGTATGGAGCAACTATTGATCTAGAATTTGGTTAAATTTAGGGTGCACTCGAATTTTTCCAGTACCTATAAAGTTAGTTGATTTATATTCTTGTATGTGAATCAGGCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAGGTGAAAGTGACATTATTGTTTCAAATAAATGGTGACAGTTATTCAAAGGCAATATACATAAATACACTGTCAAACTTGGCCTCAACTGGAAAGTAAATGCTCCAACTTTGATTATGCACATCTAGGCACCTCAACTCGTTTCCATTGTGTCAGTTGAACACTCCAACTTACAAAATGGTCATCTAGACACCAAAATTTATTTTCCACGACAGCGTGGACAGTGTCCATGACACAGTGGGGACGAGTTAGAGTGTATAGCTGCCAGTTGAGACCAAGTTGAGGTGGCTACATGTGGTCTCTCAAAGTTGAAGTGCTTAATTATCAGCTAAGGCCAAGTTTGAGTATATGTTTTATGTGTTATGCCGTTATTCAAATGGTCTATAGTCTCTGCTTTCTTTGAAGTTCTGCAGTCCAGGCAGAAGGTTTATCCGTAATAGAGTTAAGCTGTTCTGCTTGTTGTTTTAGCACAGTAAATCTATAAACCAGCTTTATCAATTCCTAAATGATAAGTTGAAACCAATGATGTCTCTCTGTCCCTCTCATGTGTGTGTATTTGAGGTTCCCTTCTAATATATTTTTATCTGCGATCTAAGGGTTCGTCAATCATTTTGCTTACATATCGTGAACTTTAAAAATTCGCAGCAGCATAGGAACCACAGAACCCCCTACTAGTAAAAATGTCCCTTCTGTCCATATCTCTACTGATTCAGATGGCAAGGACCCGTTGTGGCTTTAGCCCGCTTCTTGTTACTAAAATGATTGTGTATTTATGTGTGTTTAGACTCTTCGAGTTTAATTAATTTCAAGTTGGTTAAACTGAAAGGCCCCAGAAAGAAAGTTTAGCTTATCTATGAACGATTTGATTGATTAAAGGTAAATGAGTCGATTTAGGTCTGCTAATTGACAGGTTTAGGTGGCAAAATGTACATATACTAGTTCATTGCATTACACTATGCTGTCACTTTGTTGTGCTACTCCGAGAACTTAATTCTTTTCTTTCACAGGTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGATGTAAGTTCTTGATAGGATTTCTTTTGAGATTTTCCTACTTTTCCCGTCTCTCAACTTGTGTGCTCGCTAATGTAGGATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAA</genome_strand>
        <mrna_strand>ACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAG............................................................................................................GCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGAT...........................................................................GATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325722" ref_strand="+" ref_description="SGN-E325722 [cTOC-15-J9]">
      <seq>tagaaagaagaaaaacacagttctgccagagagaggggagagataaggagtacaacgcattaacgaaccaaatcaccaaaacctaaaggagaaaaatggcagcttcgagcattgggcatcagattcatattaatgtcaattctccaattcttcttcctttgagaaccaatttcagttcactctctttcactttctctaatgctagatacccattaaaatggaatcacattggttgccccaaaatttgtgctctaccagctgtttcaataattgcttctggaagttctagagagatgcttcctcctgcccttgattcctcttcagagccaccagcaatctttgatggaactccaaagctttatatctcttactcatgcccatatgcccaacgtacgtggattgctagaaattgtaaggcgctgcaggaagagattaagttggttcctattgatctaaagaacaggccagattggtataaggagaaggtttatccagcaaataaggtaccatcactggaacacaacaatgaagttaagggagagagtatggatctcattagatatattgacagtaactttgaagggccatcactttttccctgatgatccttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="13447" stop="9748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13147" g_stop="12868" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12079" g_stop="12005" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="355" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11407" g_stop="11347" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="416" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11346" i_stop="11239" i_length="108">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11238" g_stop="11152" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="503" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11151" i_stop="10148" i_length="1004">
            <donor d_prob="0.292" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10147" g_stop="10049" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="603" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10048" i_stop="9974" i_length="75">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9973" g_stop="9964" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="613" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E325722" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13147" e_stop="12868"/>
          <exon e_start="12079" e_stop="12005"/>
          <exon e_start="11407" e_stop="11347"/>
          <exon e_start="11238" e_stop="11152"/>
          <exon e_start="10147" e_stop="10049"/>
          <exon e_start="9973" e_stop="9964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGGGTACTCTCTTTCTCTATTTTTTTTTAGCTATTTTCTGGAATTCTCGTGTTCTTATAGTTTTAAGGTGTGTTTGGTTGGTAAGATGCAAAATGTAATTCATGTAAAATATTTATCCGGAAAATAAGTTATTTTTTTACTTATTTTTGACATATCGTCGAAAACACCATCTATGTATTAAAACACATTTCAAATAATAAATTGTTTACTTTTATCATCTATCGCTTGCAAAAATGAAACAATTGATAGTTATTATGTGAAACTCGAAAAAGGATTACATTGAGTTAATTTTTTGATTTTTTTTTTACAAAAAAACTATTGAGTCCTTATCTTTTTTATGAAGGTTGGTAAGTGAACTAGAAAATATTGTTTCAAATGTAATCTAAAAAAATATTTGTTGTTTCCTTTATTTTGAGTTATCATATTATTTGTTGTTTGTTTATGTTATCTTCTCTGTTCTCTAGCTTCACAAGGTAGGAGTAAGGTTGCGTACATATTATGCTCTCCAGTCCCACTTATAGGATACATTTAGTATGTTGTTGTAATTTCTTCTACTCTGCTTTCTTACTTGTCTTCAAACATCGATCTCGGATGGTCACTCAACTAAGAGCTATCATCTCGGAAAATCACCTTCGTAGTTGAAGGAAAATTGAAATCAAGAACAAAAGAGACCTTTTGGGATAATATCTATTAGTTAAGTGATCATCTGTGAAATCACTCGATTCTAAAAGGCGCAACTTCTATTGGGTTCAACAGTTTTGGTTAGTTCTAACAATTCCTTGTTTGTTCAGAAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAAGTTAGTTGCTCTTTTACTTTTTTGTTTGTCTCAAATGTGATTGTTGCATTTCTATTCTTCTTCTTTGTATGATATGATATGGTTAAATACTTGAATTATATACAACTAAGTCACTTAACTATTCTTTTGTCATGTTAAAAGTAACTAACACCTACAATAATGAAGTCACTAAACATTATCCTCTATAAAGTACTAAAATTTATCCATTGAAGTGACTTTTGCTGATATAGTGCATAAAAATCTATGACTTTACTGTTATAATGGATAAAATTCTATGTCGGATATTATATGGTTAGTCCAAATATGGTTCCTGACCTTTATACACTACAACGATAATGTCTATTGTTTTGTCGCATTAAACTAGCTAATAATTGAACCTTCTCTGCTATAACATTAAAGTTGCTAAACATTATCCACTATGAAGTAAAACATACCCATCAAGGTGACTTTTTTGTTATGGCGGATACAGTTTTGTGATGACAGTTTTGTAACTTTACTTTTCTAGTTGGTAAAATTCAGTGAACATATGTGAAATCAGCCTGATAAATTAGTTTATCTCCCTTGTGATAGTCAATTTATTCATTTTCTTGGTTGAAGGCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAGGTTTGTATGGAGCAACTATTGATCTAGAATTTGGTTAAATTTAGGGTGCACTCGAATTTTTCCAGTACCTATAAAGTTAGTTGATTTATATTCTTGTATGTGAATCAGGCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAGGTGAAAGTGACATTATTGTTTCAAATAAATGGTGACAGTTATTCAAAGGCAATATACATAAATACACTGTCAAACTTGGCCTCAACTGGAAAGTAAATGCTCCAACTTTGATTATGCACATCTAGGCACCTCAACTCGTTTCCATTGTGTCAGTTGAACACTCCAACTTACAAAATGGTCATCTAGACACCAAAATTTATTTTCCACGACAGCGTGGACAGTGTCCATGACACAGTGGGGACGAGTTAGAGTGTATAGCTGCCAGTTGAGACCAAGTTGAGGTGGCTACATGTGGTCTCTCAAAGTTGAAGTGCTTAATTATCAGCTAAGGCCAAGTTTGAGTATATGTTTTATGTGTTATGCCGTTATTCAAATGGTCTATAGTCTCTGCTTTCTTTGAAGTTCTGCAGTCCAGGCAGAAGGTTTATCCGTAATAGAGTTAAGCTGTTCTGCTTGTTGTTTTAGCACAGTAAATCTATAAACCAGCTTTATCAATTCCTAAATGATAAGTTGAAACCAATGATGTCTCTCTGTCCCTCTCATGTGTGTGTATTTGAGGTTCCCTTCTAATATATTTTTATCTGCGATCTAAGGGTTCGTCAATCATTTTGCTTACATATCGTGAACTTTAAAAATTCGCAGCAGCATAGGAACCACAGAACCCCCTACTAGTAAAAATGTCCCTTCTGTCCATATCTCTACTGATTCAGATGGCAAGGACCCGTTGTGGCTTTAGCCCGCTTCTTGTTACTAAAATGATTGTGTATTTATGTGTGTTTAGACTCTTCGAGTTTAATTAATTTCAAGTTGGTTAAACTGAAAGGCCCCAGAAAGAAAGTTTAGCTTATCTATGAACGATTTGATTGATTAAAGGTAAATGAGTCGATTTAGGTCTGCTAATTGACAGGTTTAGGTGGCAAAATGTACATATACTAGTTCATTGCATTACACTATGCTGTCACTTTGTTGTGCTACTCCGAGAACTTAATTCTTTTCTTTCACAGGTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCAC-TTTTCCCTGATGTAAGTTCTTGATAGGATTTCTTTTGAGATTTTCCTACTTTTCCCGTCTCTCAACTTGTGTGCTCGCTAATGTAGGATCCTTCCA</genome_strand>
        <mrna_strand>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAG............................................................................................................GCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTTCCCTGAT...........................................................................GATCCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340341" ref_strand="+" ref_description="SGN-E340341 [cTOF-2-O16]">
      <seq>atattaatgtcaattctccaattcttcttcctttgagaaccaatttcagttcactctctttcactttctctaatgctagatacccattaaaatggaatcacattggttgccccaaaatttgtgctctaccagctgtttcaataattgcttctggaagttctagagagatgcttcctcctgcccttgattcctcttcagagccaccagcaatctttgatggaactccaaagctttatatctcttactcatgcccatatgcccaacgtacgtggattgctagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="13321" stop="11055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13021" g_stop="12868" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12079" g_stop="12005" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="229" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11407" g_stop="11355" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="282" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E340341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13021" e_stop="12868"/>
          <exon e_start="12079" e_stop="12005"/>
          <exon e_start="11407" e_stop="11355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGGGTACTCTCTTTCTCTATTTTTTTTTAGCTATTTTCTGGAATTCTCGTGTTCTTATAGTTTTAAGGTGTGTTTGGTTGGTAAGATGCAAAATGTAATTCATGTAAAATATTTATCCGGAAAATAAGTTATTTTTTTACTTATTTTTGACATATCGTCGAAAACACCATCTATGTATTAAAACACATTTCAAATAATAAATTGTTTACTTTTATCATCTATCGCTTGCAAAAATGAAACAATTGATAGTTATTATGTGAAACTCGAAAAAGGATTACATTGAGTTAATTTTTTGATTTTTTTTTTACAAAAAAACTATTGAGTCCTTATCTTTTTTATGAAGGTTGGTAAGTGAACTAGAAAATATTGTTTCAAATGTAATCTAAAAAAATATTTGTTGTTTCCTTTATTTTGAGTTATCATATTATTTGTTGTTTGTTTATGTTATCTTCTCTGTTCTCTAGCTTCACAAGGTAGGAGTAAGGTTGCGTACATATTATGCTCTCCAGTCCCACTTATAGGATACATTTAGTATGTTGTTGTAATTTCTTCTACTCTGCTTTCTTACTTGTCTTCAAACATCGATCTCGGATGGTCACTCAACTAAGAGCTATCATCTCGGAAAATCACCTTCGTAGTTGAAGGAAAATTGAAATCAAGAACAAAAGAGACCTTTTGGGATAATATCTATTAGTTAAGTGATCATCTGTGAAATCACTCGATTCTAAAAGGCGCAACTTCTATTGGGTTCAACAGTTTTGGTTAGTTCTAACAATTCCTTGTTTGTTCAGAAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAAGTTAGTTGCTCTTTTACTTTTTTGTTTGTCTCAAATGTGATTGTTGCATTTCTATTCTTCTTCTTTGTATGATATGATATGGTTAAATACTTGAATTATATACAACTAAGTCACTTAACTATTCTTTTGTCATGTTAAAAGTAACTAACACCTACAATAATGAAGTCACTAAACATTATCCTCTATAAAGTACTAAAATTTATCCATTGAAGTGACTTTTGCTGATATAGTGCATAAAAATCTATGACTTTACTGTTATAATGGATAAAATTCTATGTCGGATATTATATGGTTAGTCCAAATATGGTTCCTGACCTTTATACACTACAACGATAATGTCTATTGTTTTGTCGCATTAAACTAGCTAATAATTGAACCTTCTCTGCTATAACATTAAAGTTGCTAAACATTATCCACTATGAAGTAAAACATACCCATCAAGGTGACTTTTTTGTTATGGCGGATACAGTTTTGTGATGACAGTTTTGTAACTTTACTTTTCTAGTTGGTAAAATTCAGTGAACATATGTGAAATCAGCCTGATAAATTAGTTTATCTCCCTTGTGATAGTCAATTTATTCATTTTCTTGGTTGAAGGCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAA</genome_strand>
        <mrna_strand>ATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472590" ref_strand="+" ref_description="SGN-E472590 [cSTB-29-E6]">
      <seq>agaaaacacagttccaccagagacgagtgggaagataaggagtactacgcattaacgaaccaaattaccaaaacctaaaggagaaaatggcagcttcgagcattgggtatcaaattcatattaatgtcaattctccaattcttcttcctttgagaaccaatttcagttcactctctttcactttctctaatgctaaatacccattaaaatggaatcacattggctgccccaaaatttgtgctctaccagctgtttcaataatggcttctggttccagagagatgcttcctcctgcccttgattcctcttcagagccaccagcaatctttgatggaactccaaagctttatatctcttactcgtgcccatatgcccaacgtacgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="13439" stop="11064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13139" g_stop="12868" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12867" i_stop="12077" i_length="791">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.124" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12076" g_stop="12005" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="343" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11407" g_stop="11364" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="387" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E472590" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13139" e_stop="12868"/>
          <exon e_start="12076" e_stop="12005"/>
          <exon e_start="11407" e_stop="11364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAACACAGTTCTGCCAGAGA-GAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGGGTACTCTCTTTCTCTATTTTTTTTTAGCTATTTTCTGGAATTCTCGTGTTCTTATAGTTTTAAGGTGTGTTTGGTTGGTAAGATGCAAAATGTAATTCATGTAAAATATTTATCCGGAAAATAAGTTATTTTTTTACTTATTTTTGACATATCGTCGAAAACACCATCTATGTATTAAAACACATTTCAAATAATAAATTGTTTACTTTTATCATCTATCGCTTGCAAAAATGAAACAATTGATAGTTATTATGTGAAACTCGAAAAAGGATTACATTGAGTTAATTTTTTGATTTTTTTTTTACAAAAAAACTATTGAGTCCTTATCTTTTTTATGAAGGTTGGTAAGTGAACTAGAAAATATTGTTTCAAATGTAATCTAAAAAAATATTTGTTGTTTCCTTTATTTTGAGTTATCATATTATTTGTTGTTTGTTTATGTTATCTTCTCTGTTCTCTAGCTTCACAAGGTAGGAGTAAGGTTGCGTACATATTATGCTCTCCAGTCCCACTTATAGGATACATTTAGTATGTTGTTGTAATTTCTTCTACTCTGCTTTCTTACTTGTCTTCAAACATCGATCTCGGATGGTCACTCAACTAAGAGCTATCATCTCGGAAAATCACCTTCGTAGTTGAAGGAAAATTGAAATCAAGAACAAAAGAGACCTTTTGGGATAATATCTATTAGTTAAGTGATCATCTGTGAAATCACTCGATTCTAAAAGGCGCAACTTCTATTGGGTTCAACAGTTTTGGTTAGTTCTAACAATTCCTTGTTTGTTCAGAAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAAGTTAGTTGCTCTTTTACTTTTTTGTTTGTCTCAAATGTGATTGTTGCATTTCTATTCTTCTTCTTTGTATGATATGATATGGTTAAATACTTGAATTATATACAACTAAGTCACTTAACTATTCTTTTGTCATGTTAAAAGTAACTAACACCTACAATAATGAAGTCACTAAACATTATCCTCTATAAAGTACTAAAATTTATCCATTGAAGTGACTTTTGCTGATATAGTGCATAAAAATCTATGACTTTACTGTTATAATGGATAAAATTCTATGTCGGATATTATATGGTTAGTCCAAATATGGTTCCTGACCTTTATACACTACAACGATAATGTCTATTGTTTTGTCGCATTAAACTAGCTAATAATTGAACCTTCTCTGCTATAACATTAAAGTTGCTAAACATTATCCACTATGAAGTAAAACATACCCATCAAGGTGACTTTTTTGTTATGGCGGATACAGTTTTGTGATGACAGTTTTGTAACTTTACTTTTCTAGTTGGTAAAATTCAGTGAACATATGTGAAATCAGCCTGATAAATTAGTTTATCTCCCTTGTGATAGTCAATTTATTCATTTTCTTGGTTGAAGGCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGA</genome_strand>
        <mrna_strand>AGAAA-ACACAGTTCCACCAGAGACGAGTGGGAAGATAAGGAGTACTACGCATTAACGAACCAAATTACCAAAACCTAAAGGAG-AAAATGGCAGCTTCGAGCATTGGGTATCAAATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAAATACCCATTAAAATGGAATCACATTGGCTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATGGCTTCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATATCTCTTACTCGTGCCCATATGCCCAACGTACGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342203" ref_strand="+" ref_description="SGN-E342203 [cTOF-10-J6]">
      <seq>ttagcacaaaagataaggcaatccaattctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttggtgggactattcaagctccagcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14669" stop="15935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14969" g_stop="15635" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E342203" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14969" e_stop="15635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCACAAAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGG</genome_strand>
        <mrna_strand>TTAGCACAAAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGGTGGGACTATTCAAGCTCCAGCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410320" ref_strand="+" ref_description="SGN-E410320 [PPI-16-N21]">
      <seq>aaagataaggcaatccaattctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccaatccaattctcacctcaaacccaaacccagaactctaactatccgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcagcagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagagaatgattttactggtggggtttttgaagggaagttttatggacctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacggcttcagctgttgttgggactattcaagctccagcgaggaatttggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14677" stop="15947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14977" g_stop="15647" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E410320" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14977" e_stop="15647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATG</genome_strand>
        <mrna_strand>AAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCAATCCAATTCTCACCTCAAACCCAAACCCAGAACTCTAACTATCCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAGCAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGAGAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGACCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGA-CGGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCGAGGAATTTGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610185" ref_strand="+" ref_description="SGN-E610185 [57341]">
      <seq>caattctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccaatccaattctcacctcaaacccaaacccagaactctaactatccgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcagcagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaaaggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagagaatgattttactggtggggtttttgaagggaagttttatggacctgatgagtttaaggtacttgagaatttgcctacaagagatgagatttatgcacagcttcttgggtctttgaaaggaccggcgtcagctgttgttgggactattcaagctccagcaaggaatttggttatggtgcttaaggcttatgtaaagaaattggaggaggaagagggtggaaatcaataattttgctgtaattcatggatatggtaagttaatgttattgtcaactttgattcacaagaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14692" stop="16055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14992" g_stop="15725" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E610185" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14992" e_stop="15725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATG</genome_strand>
        <mrna_strand>CAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCAATCCAATTCTCACCTCAAACCCAAACCCAGAACTCTAACTATCCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAGCAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAAGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGAGAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGACCTGATGAGTTTAAGGTACTTGAGAATTTGCCTACAAGAGATGAGATTTATGCACAGCTTCTTGGGTCTTTGAAAGGACCGGCGTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTGCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAGGGTGGAAATCAATAA-TTTTGCTGTAATTCATGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294638" ref_strand="+" ref_description="SGN-E294638 [cLET-22-K10]">
      <seq>gtctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14696" stop="15785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14995" g_stop="15485" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E294638" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14995" e_stop="15485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACT</genome_strand>
        <mrna_strand>GTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392816" ref_strand="+" ref_description="SGN-E392816 [TUS-37-C8]">
      <seq>tctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14696" stop="15920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14996" g_stop="15621" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E392816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14996" e_stop="15621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTC</genome_strand>
        <mrna_strand>TCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710598" ref_strand="+" ref_description="SGN-E710598 [FA55DF11]">
      <seq>ctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggcttatgtaaagaaattggaggaggaagaaggtggaagncaataatttttgttgtaattcttggatatggtaagctaatactattgtctatttggatcaatatttgaaatttttctgagagatggaattttgtaaattttatgtttttggtagaatgaatttatccttgggccaatgttctaaatttgtgtcctcgtaattggcggataattatctggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14697" stop="16179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15879" g_length="883"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="883" r_length="883" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E710598" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGCCAATTGTTCTAAATTTGTGTCCTCGTATTTGGCGGATAATTATCTGGATTAC</genome_strand>
        <mrna_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGNCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGGCCAATGTTCTAAATTTGTGTCCTCGTAATTGGCGGATAATTATCTGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415791" ref_strand="+" ref_description="SGN-E415791 [STM-21-P12]">
      <seq>ctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttctgtgaaatcccacttcaacaatcccttcataatcccccaatccaattctcatctcaaacccaaacccagaactctaactatccgttcagccattagcagaaccaagaaagaagaaacagttgaaacagtgaagcagcagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaggagaatgattttactggtggggtttttgaagggaaattttatggacctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggaccggcttcagctgttgttgggactattcaagctccagcaaggaatttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14697" stop="15943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15643" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E415791" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGT</genome_strand>
        <mrna_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCTGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCAATCCAATTCTCATCTCAAACCCAAACCCAGAACTCTAACTATCCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTTGAAACAGTGAAGCAGCAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAGGAGAATGATTTTACTGGTGGGGTTTTTGAAGGGAAATTTTATGGACCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCGGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299219" ref_strand="+" ref_description="SGN-E299219 [cLET-43-I7]">
      <seq>ctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14697" stop="15869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15569" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E299219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCA</genome_strand>
        <mrna_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413933" ref_strand="+" ref_description="SGN-E413933 [STM-18-N3]">
      <seq>ctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccaatccaattctcacctcaaacccaaacccagaactctaactatccgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcagcagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttngtcatagtgaagaaatcccagctgctttgaaaccttatagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14697" stop="15743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15443" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E413933" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGG</genome_strand>
        <mrna_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCAATCCAATTCTCACCTCAAACCCAAACCCAGAACTCTAACTATCCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAGCAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAG-AACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTNGTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296631" ref_strand="+" ref_description="SGN-E296631 [cLET-39-P16]">
      <seq>ctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14697" stop="15701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15401" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E296631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTT</genome_strand>
        <mrna_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472934" ref_strand="+" ref_description="SGN-E472934 [cSTB-30-O24]">
      <seq>ctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccaatccaattctcacctcaaacccaaacccagaactctaactatccgttcagccattagcagacgcaagaaagaagaaacagtcgaaacagtgaagcagcagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14697" stop="15623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15323" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E472934" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACA</genome_strand>
        <mrna_strand>CTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCAATCCAATTCTCACCTCAAACCCAAACCCAGAACTCTAACTATCCGTTCAGCCATTAGCAGACGCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAGCAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347557" ref_strand="+" ref_description="SGN-E347557 [cTOF-26-C20]">
      <seq>tcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccaattcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggctttatgtaagaaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14698" stop="15976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14998" g_stop="15676" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E347557" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14998" e_stop="15676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGC-TTATGTAAAGAAATTGGA</genome_strand>
        <mrna_strand>TCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCAATTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTTATGT-AAGAAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288229" ref_strand="+" ref_description="SGN-E288229 [cLES-16-C11]">
      <seq>tcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14698" stop="15918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14998" g_stop="15618" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E288229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14998" e_stop="15618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTA</genome_strand>
        <mrna_strand>TCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344866" ref_strand="+" ref_description="SGN-E344866 [cTOF-21-D21]">
      <seq>ctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14703" stop="15903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="15603" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E344866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="15603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAG</genome_strand>
        <mrna_strand>CTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343082" ref_strand="+" ref_description="SGN-E343082 [cTOF-11-H2]">
      <seq>atcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggctttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14708" stop="15965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15008" g_stop="15665" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E343082" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15008" e_stop="15665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGC-TTATGTA</genome_strand>
        <mrna_strand>ATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345113" ref_strand="+" ref_description="SGN-E345113 [cTOF-22-J11]">
      <seq>ctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggcttatgtaaagaaattggaggaggaagaaagntggaagtcaataatttttgttgtaattcttggatatggtaagctaatactattgtctaatttggatcaatatttgaaatttttctgagagatggaattttgtaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14722" stop="16095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15022" g_stop="15795" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E345113" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15022" e_stop="15795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAG-AAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCT-ATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTT</genome_strand>
        <mrna_strand>CTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAAGNTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTAATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337986" ref_strand="+" ref_description="SGN-E337986 [cTOE-14-M23]">
      <seq>tctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14723" stop="15606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15023" g_stop="15306" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E337986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15023" e_stop="15306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTC</genome_strand>
        <mrna_strand>TCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343076" ref_strand="+" ref_description="SGN-E343076 [cTOF-11-F2]">
      <seq>ctcacctgaaactccaacccaggaactctaactattcgttcagcctttagcagaaccaagaaagaagaaacaggcgtaacagtgaagcaacagcttgaagatggtcatctattagctggaatcagttacaagggggtaacagataagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttctcgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggctattggttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaacttggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14815" stop="15874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15115" g_stop="15574" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E343076" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15115" e_stop="15574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCTCAAACTCAAACCCA-GAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCT</genome_strand>
        <mrna_strand>CTCACCTGAAACTCCAACCCAGGAACTCTAACTATTCGTTCAGCCTTTAGCAGAACCAAGAAAGAAGAAACAGGCGTAACAGTGAAGCAACAGCTTGAAGATGGTCATCTATTAGCTGGAATCAGTTACAAGGGGGTAACAGATAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTCGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGCTATTGGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAACTTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576750" ref_strand="+" ref_description="SGN-E576750 [60017]">
      <seq>ggaaagtgcagaatagtacatttcacagaacagttatgaagtaatccagttagccaaatacaaggacaccaattagaagaattggcaaaggattaactcattctaccaaaccataaatttacaaaattccatctttcagaaaaatctcgaacattgaatcaaattgacaataacattaacttaccatatccatgaattacaacaaaattattgacttccaccttcttcctcctccaatttctttacataagccttaagcaccataaccaaattccttgctggagcttgaatagtcccaacaacagctgaagccggtcctttcaaagacccaagaagctgtgaataaatctcagctcttgtaggcaaattctcaagcaccttaaactcatcaggtccataaaatttcccttcaaaaaccccaccagtaaaatcattctcttctaatttcttctcccttagaaaagtcctataaggtttcaaagcagctgggatttcttcactatgaacaaataaccaagcattcattcctttcatacatggtttcaatgcttcccattttgtcccttcaattgctttaagtaccaatgtgttcttagcaacaagaagctttgtagtttctgggagttgagccctgagatcttgaaattgcttaacagttaaccccttgtaactgattccagctaaaaggtaacaatcttcaagctgttgcttcactgtttcgactgtttcttctttcttggttctgctaatggctgaacggatagttagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="16235" stop="14839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15859" g_stop="15139" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="770" r_length="717" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E576750" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15859" e_stop="15139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATACGAGGACACAAATTTAGAACAATTGGCCAAGGATAAATTCATTCTACCAAAAACATAAAATTTACAAAATTCCATCTCTCAGAAAAATTTCAAATATTGATCCAAATAGACAATAGTATTAGCTTACCATATCCAAGAATTACAACAAAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGAACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCAGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGCCCATAAAACTTCCCTTCAAAAACCCCACCAGTAAAATCATTATCTTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTAAGTACCAATGTGTTCTTAGCAACAAGAAGCTTTGTTGTTTCTGGGAGTTGAGCCCTAAGATCTTGAAATTGCTTAACTGTTAACCCCTTGTAACTGATTCCAGCTAAGAGATAACAATCTTCAAGCTGTTGCTTCACTGTTTCGACTGTTTCTTCTTTCTTGGTTCTGCTAATGGCTGAACGAATAGTTAGAG</genome_strand>
        <mrna_strand>CCAAATACAAGGACACCAAT-TAGAAGAATTGGCAAAGGATTAACTCATTCTACC-AAACCAT-AAATTTACAAAATTCCATCTTTCAGAAAAATCTCGAACATTGAATCAAATTGACAATAACATTAACTTACCATATCCATGAATTACAAC-AAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGCACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCCGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGTCCATAAAATTTCCCTTCAAAAACCCCACCAGTAAAATCATTCTCTTCTAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCTTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTAAGTACCAATGTGTTCTTAGCAACAAGAAGCTTTGTAGTTTCTGGGAGTTGAGCCCTGAGATCTTGAAATTGCTTAACAGTTAACCCCTTGTAACTGATTCCAGCTAAAAGGTAACAATCTTCAAGCTGTTGCTTCACTGTTTCGACTGTTTCTTCTTTCTTGGTTCTGCTAATGGCTGAACGGATAGTTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415792" ref_strand="+" ref_description="SGN-E415792 [STM-21-P12]">
      <seq>tcctttttttttnagaacaattggcaaaggtttaattcattctaacaaaaacataaaatttacaaaattccatctttcagaaaaatttcaaatattgaaccaaattgacaataacattaacttaccatatccaacaactacaacaaaattattgacttccaccttcttcctcctccaatttctttacataagccttaagcaccataaccaaattccttgctggagcttgaatagtcccaacaacagctgaagccggtcctttcaaagacccaagaagctgtgaataaatctcagctcttgtaggcaaattctcaagcaccttaaactcatcaggtccataaaatttcccttcaaaaaccccaccagtaaaatcattctcctccaatttcttctcccttagaaaagtcctataaggtttcaaagcagctgggatttcttcactatgaacaaataaccaagcattcattcccttcatacatggtttcaatgcttcccattttgtcccttcaattgctttaagtaccaatgtgttcttagcaacaagaagctttgttgtttctgggagttgagccctaagatcttgaaattgcttaactgttaaccccttgtaactgattccagctaagagataacaatcttcaagctgctgcttcactggttcaactgtttcttctttcttggttctgctaatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="16140" stop="14854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15835" g_stop="15154" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="696" r_length="681" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E415792" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15835" e_stop="15154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGGCCAAGGATAAATTCATTCTACCAAAAACATAAAATTTACAAAATTCCATCTCTCAGAAAAATTTCAAATATTGATCCAAATAGACAATAGTATTAGCTTACCATATCCAAGAATTACAACAAAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGAACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCAGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGCCCATAAAACTTCCCTTCAAAAACCCCACCAGTAAAATCATTATCTTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTAAGTACCAATGTGTTCTTAGCAACAAGAAGCTTTGTTGTTTCTGGGAGTTGAGCCCTAAGATCTTGAAATTGCTTAACTGTTAACCCCTTGTAACTGATTCCAGCTAAGAGATAACAATCTTCAAGCTGTTGCTTCACTGTTTCGACTGTTTCTTCTTTCTTGGTTCTGCTAATGGCTG</genome_strand>
        <mrna_strand>AACAATTGGCAAAGGTTTAATTCATTCTAACAAAAACATAAAATTTACAAAATTCCATCTTTCAGAAAAATTTCAAATATTGAACCAAATTGACAATAACATTAACTTACCATATCCAACAACTACAAC-AAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGCACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCCGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGTCCATAAAATTTCCCTTCAAAAACCCCACCAGTAAAATCATTCTCCTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTAAGTACCAATGTGTTCTTAGCAACAAGAAGCTTTGTTGTTTCTGGGAGTTGAGCCCTAAGATCTTGAAATTGCTTAACTGTTAACCCCTTGTAACTGATTCCAGCTAAGAGATAACAATCTTCAAGCTGCTGCTTCACTGGTTCAACTGTTTCTTCTTTCTTGGTTCTGCTAATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402135" ref_strand="+" ref_description="SGN-E402135 [PPC-6-F19]">
      <seq>gaaacagtcgaaacagtgaagcagcagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagagaatgattttactggtggggtttttgaagggaaattttatggacctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggaccggcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggtgcttaaggcttatgtaaagaaattggaggaggaagagggtggaaatcaataattttgttgtaattcatggatatggtaagttaatgttattgtcaatttgattcaatattcgagatttttctgaaagatgggatttttgtaatttatggtttggtagaatgagttaatcctttgccaatttctctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14880" stop="16140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15180" g_stop="15843" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E402135" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15180" e_stop="15843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGCCAATTGTTCTAAATTT</genome_strand>
        <mrna_strand>GAAACAGTCGAAACAGTGAAGCAGCAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGAGAATGATTTTACTGGTGGGGTTTTTGAAGGGAAATTTTATGGACCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCGGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTGCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAGGGTGGAAATCAATAA-TTTTGTTGTAATTCATGGATATGGTAAGTTAATGTTATTGTCAATTTGATTCAATATTCGAGATTTTTCTGAAAGATGGGATTTT-TGTAATTTATG-GTTTGGTAGAATGAGTTAATCCTTTGCCAATTTCTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287823" ref_strand="+" ref_description="SGN-E287823 [cLES-19-J17]">
      <seq>ttttagaacaattggccaaggataaattcattctaccaaaaacataaaatttacaaaattccatctctcagaaaaatttcaaatattgatccaaatagacaatagtattagcttaccatatccaagaattacaacaaaaattattgacttccaccttcttcctcctccaatttctttacataagccttaagaaccataaccaaattccttgctggagcttgaatagtcccaacaacagctgaagcaggtcctttcaaagacccaagaagctgtgaataaatctcagctcttgtaggcaaattctcaagcaccttaaactcatcaggcccataaaacttcccttcaaaaaccccaccagtaaaatcattatcttccaatttcttctcccttagaaaagtcctataaggtttcaaagcagctgggatttcttcactatgaacaaataaccaagcattcattcccttcatacatggtttcaatgcttcccattttgtcccttcaattgctttaagtaccaatgtgttcttagcaacaagaagctttgttgtttctgggagttgagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="16140" stop="14976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15841" g_stop="15276" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E287823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15841" e_stop="15276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGAACAATTGGCCAAGGATAAATTCATTCTACCAAAAACATAAAATTTACAAAATTCCATCTCTCAGAAAAATTTCAAATATTGATCCAAATAGACAATAGTATTAGCTTACCATATCCAAGAATTACAACAAAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGAACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCAGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGCCCATAAAACTTCCCTTCAAAAACCCCACCAGTAAAATCATTATCTTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTAAGTACCAATGTGTTCTTAGCAACAAGAAGCTTTGTTGTTTCTGGGAGTTGAGCCCT</genome_strand>
        <mrna_strand>TTTTAGAACAATTGGCCAAGGATAAATTCATTCTACCAAAAACATAAAATTTACAAAATTCCATCTCTCAGAAAAATTTCAAATATTGATCCAAATAGACAATAGTATTAGCTTACCATATCCAAGAATTACAACAAAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGAACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCAGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGCCCATAAAACTTCCCTTCAAAAACCCCACCAGTAAAATCATTATCTTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTAAGTACCAATGTGTTCTTAGCAACAAGAAGCTTTGTTGTTTCTGGGAGTTGAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413934" ref_strand="+" ref_description="SGN-E413934 [STM-18-N3]">
      <seq>aaaaatcattttaattggcaaaggataaattcattctaccaaaaacataaaatttacaaaattccatctttcagaaaaatttcaaatattgaaccaaattgacaataacattaacttaccatatccaagaattacaataaaattattgacttccaccttcttcctcttccaatttctttacataagccttaagcaccataaccaaattcctcgctggagcttgaatagtcccaacaacagctgaagccggtcctttcaaagacccaagaagctgtgaataaatctcagctcttgtaggcaaattctcaagcaccttaaactcatcaggtccataaaacttcccttcaaaaaccccaccagtaaaatcattctcttccaatttcttctcccttagaaaagtcctataaggtttcaaagcagctgggatttcttcactatgaacaaataaccaagcattcattcccttcatacatggtttcaatgcttcccattttgtcccttcaattgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="16132" stop="15032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15844" g_stop="15332" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E413934" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15844" e_stop="15332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTAGAACAATTGGCCAAGGATAAATTCATTCTACCAAAAACATAAAATTTACAAAATTCCATCTCTCAGAAAAATTTCAAATATTGATCCAAATAGACAATAGTATTAGCTTACCATATCCAAGAATTACAACAAAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGAACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCAGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGCCCATAAAACTTCCCTTCAAAAACCCCACCAGTAAAATCATTATCTTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTA</genome_strand>
        <mrna_strand>AAAAATCATTTTAATTGGCAAAGGATAAATTCATTCTACCAAAAACATAAAATTTACAAAATTCCATCTTTCAGAAAAATTTCAAATATTGAACCAAATTGACAATAACATTAACTTACCATATCCAAGAATTACAA-TAAAATTATTGACTTCCACCTTCTTCCTCTTCCAATTTCTTTACATAAGCCTTAAGCACCATAACCAAATTCCTCGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCCGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGTCCATAAAACTTCCCTTCAAAAACCCCACCAGTAAAATCATTCTCTTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217934" ref_strand="+" ref_description="SGN-E217934 [cLEL-23-I17](-)">
      <seq>attgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggcttatgtaaagaaattggaggaggaagaaggtggaagtcaataatttttgttgtaattcttggatatggtaagctaatactattgtctatttggatcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="15062" stop="16058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15362" g_stop="15755" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="414"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E217934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15362" e_stop="15755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCA</genome_strand>
        <mrna_strand>ATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393010" ref_strand="+" ref_description="SGN-E393010 [TUS-37-C8](-)">
      <seq>aagaaatcccaggtgctttgaaaccttataggacttttttaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttctatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggcttatgtaaagaaattggaggaggaagaaggtggaagtcaataatttttgttgtaattcttggatatggtaagctaatactattgtctatttggatcaatatttgaaatttttctgagagatggaattttgtaaattttacgtttttggtagaatgaatttatccttggccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="15112" stop="16130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15412" g_stop="15829" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="439"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E393010" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15412" e_stop="15829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGCCA</genome_strand>
        <mrna_strand>AAGAAATCCCAGGTGCTTTGAAACCTTATAGGACTTTTTTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTCTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTACGTTTTTGGTAGAATGAATTTATCCTTGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218154" ref_strand="+" ref_description="SGN-E218154 [cLEL-23-I17](-)">
      <seq>taatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggcttatgtaaagaaattggaggaggaagaaggtggaagtcaataatttttgttgtaattcttggatatggtaagctaatactattgtctatttggatccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="15173" stop="16058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15473" g_stop="15755" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="303"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E218154" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15473" e_stop="15755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCA</genome_strand>
        <mrna_strand>TAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371650" ref_strand="+" ref_description="SGN-E371650 [TUS-29-E20](-)">
      <seq>gaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggtttttaaggcttatgtaaagaaattggaggaggaagaaggtggaagtcaataatttttgttgtaattcttggatatggtaagctaatactattgtctatttggatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="15287" stop="16058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15587" g_stop="15755" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="170" polyA_stop="184"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E371650" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15587" e_stop="15755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCA</genome_strand>
        <mrna_strand>GAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTTTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371651" ref_strand="+" ref_description="SGN-E371651 [TUS-29-E20]">
      <seq>aaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggcttatgtaaagaaattggaggaggaagaaggtggaagtcaataatttttgttgtaattcttggatatggtaagctaatactattgtctatttggatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="15288" stop="16058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15588" g_stop="15755" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="169" polyA_stop="184"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E371651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15588" e_stop="15755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCA</genome_strand>
        <mrna_strand>AAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200480" ref_strand="+" ref_description="SGN-E200480 [cLEB-8-B18]">
      <seq>tcggcacgagcgaaacttgtcttctccgagaagagaagagaaaaaaagccattcgaatacagcagagaagcaaagagcgagcatttctgcttctatcaaactgtacgaagcctctcaaagcaacagcagcagcagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgctattgggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19721" stop="21731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20019" g_stop="20257" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21431" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="331" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E200480" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20019" e_stop="20257"/>
          <exon e_start="21340" e_stop="21431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCAAAAACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAG</genome_strand>
        <mrna_strand>TCGGCACGAGCGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567885" ref_strand="+" ref_description="SGN-E567885 [12081]">
      <seq>gcaaaaacgaacttgtcttctccgagaagagaaaagaagagaaaaagccattagaatacggcagagaagcaaagagcaagcatttctagttctaccaaactgtacaaagcctctcaaagcagcagcagcagaagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgtactcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagacgaggatagggtaattgagaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgggctcaattaaaccacacacttaaggtgtatttgccagagtgtaacttgccaaaggagtcatggaaatctgagctaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19722" stop="23230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20022" g_stop="20257" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="371" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="460" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="22930" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="491" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E567885" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20022" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAACGAAACTTGTCTTCTCCGAGAAGAG--AAG-AGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAG</genome_strand>
        <mrna_strand>GCAAAAACG-AACTTGTCTTCTCCGAGAAGAGAAAAGAAGAGAAAAAGCCATTAGAATACGGCAGAGAAGCAAAGAGCAAGCATTTCTAGTTCTACCAAACTGTACAAAGCCTCTCAAAGCAGCAGCAGCAGAAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTACTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGACGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGGGCTCAATTAAACCACACACTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCATGGAAATCTGAGCTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413351" ref_strand="+" ref_description="SGN-E413351 [STM-17-D6]">
      <seq>ctcctcttttgccttctccgagaagagaagagaaaaagccattagaatacggcagagaagcaaagagcaagcatttctagttctaccaaactgtacagagcctctcaaagcagcagcagcagaagaagaagaatctgaagaaatggacgattatactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgtactcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagagtaattgagaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgggctcaattaaaccacacacttaaggtgtatttgccagagtgtaacttgccaaaggagtcatggaaatctgagctaaaagaattcagcagcaagaatggatatgatcttaacaggaatggtgacagtgctccattgcttttggatgttcttgaggattcttggaatacgagaacttctctcaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19735" stop="23648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20027" g_stop="20257" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="362" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="451" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="573" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23333" g_stop="23348" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="589" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E413351" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20027" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAA</genome_strand>
        <mrna_strand>CTCCTCTTTTGCCTTCTCCGAGAAGAGAAGAG-A-AAAAGCCATTAGAATACGGCAGAGAAGCAAAGAGCAAGCATTTCTAGTTCTACCAAACTGTACAGAGCCTCTCAAAGCAGCAGCAGCAGAAGAAGAAGAATCTGAAGAAATGGACGATTATACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTACTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGAGTAATTGAGAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGGGCTCAATTAAACCACACACTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCATGGAAATCTGAGCTAAAAGAATTCAGCAGCAAGAATGGATATGATCTTAACAGGAATGGTGACAGTGCTCCATTGCTTTTGGATGTTCTTG-AGGATTCTTGGAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472077" ref_strand="+" ref_description="SGN-E472077 [cSTB-27-K6]">
      <seq>ctcctcttttgccttctccgagaagagaagagaaaaagccattagaatacggcagagaagcaaagagcaagcatttctagttctaccaaactgtacagagcctctcaaagcagcagcagcagaagaagaagaatctgaagaaatggacgattatactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgtactcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagagtaattgagaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19735" stop="23047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20027" g_stop="20257" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="362" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22747" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="403" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E472077" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20027" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGG</genome_strand>
        <mrna_strand>CTCCTCTTTTGCCTTCTCCGAGAAGAGAAGAG-A-AAAAGCCATTAGAATACGGCAGAGAAGCAAAGAGCAAGCATTTCTAGTTCTACCAAACTGTACAGAGCCTCTCAAAGCAGCAGCAGCAGAAGAAGAAGAATCTGAAGAAATGGACGATTATACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTACTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGAGTAATTGAGAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543718" ref_strand="+" ref_description="SGN-E543718 [TUS-65-K21]">
      <seq>acgaaacttgtcttctccgagaagagaagagaaaaaaagccattcgaatacagcagagaagcaaagagcgagcatttctgcttctatcaaactgtacgaagcctctcaaagcaacagcagcagcagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgctattgggtagctgcaatgatcaggcaaaacaactccataattcaccttcaggaaggttactaactgcacttgtatgtgaatatttggattgggctcaattaaaccacacatttaaggtgtatttgccagagtgtaacttgccaaaggagtcgtggaaatctgagctaaaagaatttagcagcaagaatgggtatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19728" stop="23710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20028" g_stop="20257" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="363" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="452" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="575" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23333" g_stop="23410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="653" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E543718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20028" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCA</genome_strand>
        <mrna_strand>ACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304371" ref_strand="+" ref_description="SGN-E304371 [cLEX-12-J2]">
      <seq>ctaaacttgtcttcttcgagttgagaagagaaaaaaagccattctaatacagcagagaagcaaagagcgagcatttctgcttctatcaaactgtacgaagcctctcaaagcaacagcagcagcagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgctattgggtagctgcaatgatcaggcaaaacaactccataattcaccttcacgaaggttactaactgcacttgtatgtgaatatttggattgggctcaattaaaccacacatttaaggtgtatttgccagagtgtaacttgccaaaggagtcgtggaaatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19729" stop="23223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20029" g_stop="20257" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="362" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="451" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="22923" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="475" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E304371" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20029" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="22923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAG</genome_strand>
        <mrna_strand>CTAAACTTGTCTTCTTCGAGTTGAGAAGAGAAAAAAAGCCATTCTAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCGTGGAAATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339948" ref_strand="+" ref_description="SGN-E339948 [cTOF-3-J4]">
      <seq>gaaacttgtcttctccgagaagagaagagaaaaaaagccattcgaatacagcagagaagcaaagagcgagcatttctgcttctatcaaactgtacgaagcctctcaaagcaacagcagcagcagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgctattgggtagctgcaatgatcaggcaaaacaactccataattcaccttcaggaaggttactaactgcacttgtatgtgaatatttggattgggctcaattaaaccacacatttaaggtgtatttgccagagtgtaacttgccaaaggagtcgtggaaatctgagctaaaagaatttagcagcaagaatgggtatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttcagttgccgggggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19730" stop="23724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20030" g_stop="20257" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="450" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="573" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23333" g_stop="23424" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="665" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E339948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20030" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTT</genome_strand>
        <mrna_strand>GAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466219" ref_strand="+" ref_description="SGN-E466219 [cPRO-23-H1]">
      <seq>aaacgaagttgtgttctcctcttttgccttctccgagaagagatgagaccaagccattagaatacggcagagaagcaaagagcaagcatttcgagttctaccaaactgtacaaagcctctcaaagcagcagcagcagaagaagaagaatctgaagaaatggacgattatactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgtactcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagagtaattgagaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgggctcaattaaaccacacacttaaggtggatttgccagagtgtaacttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19735" stop="23095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20035" g_stop="20257" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="244" r_length="221" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="377" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22797" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="468" r_length="91" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E466219" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20035" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGT</genome_strand>
        <mrna_strand>TTGCCTTCTCCGAGAAGAGATGAGACCAA--GCCATTAGAATACGGCAGAGAAGCAAAGAGCAAGCATTTCGAGTTCTACCAAACTGTACAAAGCCTCTCAAAGCAGCAGCAGCAGAAGAAGAAGAATCTGAAGAAATGGACGATTATACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTACTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGAGTAATTGAGAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGGGCTCAATTAAACCACACACTTAAGGTGGATTTGCCAGAGTGTAACTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485938" ref_strand="+" ref_description="SGN-E485938 [cSTE-20-O21]">
      <seq>cgaacttgtcttctcctcttttgccttctccgagaagagaagagaaaaagccattagaatacggcagagaagcaaagagcaagcatttctagttctaccaaactgtacaaagcctctcaaagcagcagcagcagaagaagaagaatctgaagaaatggacgattatactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgtactcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgggctcgattaaaccacacacttaaggtgtatttgccagagtgtaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19735" stop="23095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20035" g_stop="20257" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="241" r_length="221" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="374" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="463" r_length="89" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E485938" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20035" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG</genome_strand>
        <mrna_strand>TTGCCTTCTCCGAGAAGAGAAGAGA--AAAAGCCATTAGAATACGGCAGAGAAGCAAAGAGCAAGCATTTCTAGTTCTACCAAACTGTACAAAGCCTCTCAAAGCAGCAGCAGCAGAAGAAGAAGAATCTGAAGAAATGGACGATTATACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTACTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGGGCTCGATTAAACCACACACTTAAGGTGTATTTGCCAGAGTGTAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340964" ref_strand="+" ref_description="SGN-E340964 [cTOF-5-B13]">
      <seq>ttctccgagaagagaagagaaaaaaagccattcgaatacagcagagaagcaaagagcgagcatttctgcttctatcaaactgtacgaagcctctcaaagcaacagcagcagcagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgctattgggtagctgcaatgatcaggcaaaacaactccataattcaccttcaggaaggttactaactgcacttgtatgtgaatatttggattgggctcaattaaaccacacatttaaggtgtatttgccagagtgtaacttgccaaaggagtcgtggaaatctgagctaaaagaatttagcagcaagaatgggtatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttcagttgccgggggcttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19740" stop="23728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20040" g_stop="20257" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="351" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="440" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="563" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23333" g_stop="23428" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="658" r_length="95" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E340964" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20040" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCA</genome_strand>
        <mrna_strand>TTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCT-AAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572300" ref_strand="+" ref_description="SGN-E572300 [31432]">
      <seq>cgagaagagaagagaaaaagccattccgaatacagcagagaagcaaagagcaagcatttctacttctaccaaactgtacagagcccctctcaaagcagcagcagcagcagaagaagaagaatctgaagaaatggacgattatactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgtactcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgggctcaattaaaccacacacttaaggtgtatttgccagagtgtaacttgccaaaggagtcatggaaatctgagctaaaagaattcagcagcaagaatggatatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgctaggaagcttcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19745" stop="23706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20045" g_stop="20257" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="350" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="439" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="562" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23333" g_stop="23406" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="635" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E572300" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20045" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAGAGAAGAGAAAAAAAGCCATT-CGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTAC-GA-AGCCTCTCAAAGCAACAGCAGCAGCAG-A-A-GAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATC</genome_strand>
        <mrna_strand>CGAGAAGAGAAGAGAAA--AAGCCATTCCGAATACAGCAGAGAAGCAAAGAGCAAGCATTTCTACTTCTACCAAACTGTACAGAGCCCCTCTCAAAGCAGCAGCAGCAGCAGAAGAAGAAGAATCTGAAGAAATGGACGATTATACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTACTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGGGCTCAATTAAACCACACACTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCATGGAAATCTGAGCTAAAAGAATTCAGCAGCAAGAATGGATATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGCTAGGAAG-CTTCTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281442" ref_strand="-" ref_description="SGN-E281442 [cLEL-1-M15](-)">
      <seq>gcacgaggagcatttctgcttctatcaaactgtacgaagcctctcaaagcagcgtcggctgcagaagaagaatctgaacacatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgctattgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19788" stop="21729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20088" g_stop="20257" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21429" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="258" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E281442" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281442" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20088" e_stop="20257"/>
          <exon e_start="21340" e_stop="21429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGT</genome_strand>
        <mrna_strand>GC-ACGAG-GAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAGCGTCGGCTGCAGAAGAAGAATCTGAACACATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572812" ref_strand="+" ref_description="SGN-E572812 [32024]">
      <seq>gcaaactgtacagagcccctttcaaagcagcagcagcagaagaagaagaatctgaagaaatggacgattatactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgtactcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagacgaggatagggtaattgagaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgggctcaattaaaccacacacttaaggtgtatttgccagagtgtaacttgccaaaggagtcatggaaatctgagctaaaagaattcagcagcaagaatggatatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttcagttgccggggggttacctccgttggggaaggcccagttctgctgcgcagtcatctgacagaagggcagttcatctatatccggatatagaaagatgaataccactgcgagatatgaaaatgaagagctttcgcaagatgtaatgcttgctcatattggtttagaaaaaactttcaattggacaaaaaagtctcggaaccttaaccattcattggcggcacagaggtgatggcatttctgaggatgatggcaggatggaatagatgagattatatcatctccaaatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19829" stop="24614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20114" g_stop="20257" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="279" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="368" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="491" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23333" g_stop="23439" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="599" r_length="108" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23519" g_stop="23544" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="625" r_length="26" r_score="0.846"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23630" g_stop="23786" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="785" r_length="160" r_score="0.834"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453">
            <donor d_prob="0.978" d_score="0.79"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24240" g_stop="24314" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="858" r_length="73" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E572812" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20114" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23439"/>
          <exon e_start="23519" e_stop="23544"/>
          <exon e_start="23630" e_stop="23786"/>
          <exon e_start="24240" e_stop="24314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTGTAC-GAA-GCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTT-AGGAAGGTTAACACATTAAATATTATCACTTATTTTACTTTTTCATTTGGATTTAAAATTGACTTGGAACCATTTTACCGCACAGGCCAGGTCCTGCTGCCCAGTCATCTGGTAAGTAATCTAGCTGACCCTCCTCCCCCCGTGCCCTGGCAGTTAATTCCCGTCGAATGAATTTCTGAAATTGTTGAGTTTCTAGACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTG-GAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCAT-CTGCCTTAG--AAAACCTTCAATTGGACAGAAAAG-CTCGGAACCTTGCCACTTCA-TGGCGGTCAGTGTTTGAACTCTCAAAGGACTTAAATTACACATTTGGTTATAATGTTATTATCTATTGGCTTGCAATGAGTCCTCAGTTTTTGTGGATTATAGTGCCAAAAAAATCACGTCTTTTAAGTGCTCCTCTCCAAAAGACATTACTATGCTTGTAAAGTCCTCCCCTTTTATTTGATAGAGTAGATGTTTGTTACATCTACATGTCAAGGTAAGGGTAAAGAATCCGTACACTCTTACCATCTCATATAGAAATTTGTTGCATGAGTATCATGGGAAGTTCAAGTATATCATCGTGATAAGTGATTGCCAAGAACTGATGATAAGCTGCAGAAGTTCTTGAAAAACATGCATAGAGTAGTTTTTCCTTTTCTCGATGTCTCCGTTGTTTGTCATCCTTTAACTTACTGTCCAGCAAATTGAGTGGTTTCTCAACTTGTGTTGAAATTTGCAGGCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACT</genome_strand>
        <mrna_strand>GCAAACTGTACAGAGCCCCTTTCAAAGCAGCAGCAGCAGAAGAAGAAGAATCTGAAGAAATGGACGATTATACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTACTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGACGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGGGCTCAATTAAACCACACACTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCATGGAAATCTGAGCTAAAAGAATTCAGCAGCAAGAATGGATATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGGTTACCTCCGTTGGGGAAG...............................................................................GCCCAGTTCTGCTGCGCAGTCATCTG.....................................................................................ACAGAAGGGCA-GTTCATCTATATCCGGATATA-GAAAGATGAATACCACTGCGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTG-CTCATATTGGTTTAGAAAAAACTTTCAATTGGACAAAAAAGTCTCGGAACCTTAACCATTCATTGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGAGGTGATGGCATTTCTGAGGATGATGGCAGGATGGAAT-AGA-TGAGATTATATCATCTCCAAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280091" ref_strand="-" ref_description="SGN-E280091 [cLEL-7-J4](-)">
      <seq>tcaaactgtacgaagcctctcaaagcaacagcagcagcagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19814" stop="21723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20114" g_stop="20257" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21423" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="228" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E280091" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280091" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20114" e_stop="20257"/>
          <exon e_start="21340" e_stop="21423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTA</genome_strand>
        <mrna_strand>TCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543717" ref_strand="+" ref_description="SGN-E543717 [TUS-65-K21](-)">
      <seq>aattgaagatgaggatagggtaattgagaaggatgaaaccttgccccttgcgctattgggtagctgcaatgatcaggcaaaacaactccataatcaccttcaggaaggttactaactgcacttgtatgtgaatatttggattgggctcaattaaaccacacatttaaggtgtatttgccagagtgtaacttgccaaaggagtcgtggaaatctgagctaaaagaatttagcagcaagaatgggtatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttcagttgccgggggcttaccaccgttaggaaggccaggtcctgctgcccagtcatctgacagaagggcaggttcatctgtatccggatataggaaagatgaatacaactggagatatgaaaatgaagagctttcgcaagatgtaatgcttgcctcatctgccttagaaaaccttcaattggacagaaaagctcggaaccttgccacttcatggcggcatagaggtgatggcatttctgagaatgatggcaggatggaataagattgagattatatcatctcgaaatcactaattatatgggaattgatgatatccttcaacgtagaaatgcaatgttctaatgtacgctatgtatgatttaatacacaatattgcttgtagtaattcgtgtgtgcttctcattttcctgtagtaattcgtgtgtgcttctcaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="21069" stop="24756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21369" g_stop="21472" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="192" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="315" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23333" g_stop="23439" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="422" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23519" g_stop="23544" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="448" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23630" g_stop="23786" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="605" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24240" g_stop="24455" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="821" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="837"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E543717" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21369" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23439"/>
          <exon e_start="23519" e_stop="23544"/>
          <exon e_start="23630" e_stop="23786"/>
          <exon e_start="24240" e_stop="24455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAGGTTAACACATTAAATATTATCACTTATTTTACTTTTTCATTTGGATTTAAAATTGACTTGGAACCATTTTACCGCACAGGCCAGGTCCTGCTGCCCAGTCATCTGGTAAGTAATCTAGCTGACCCTCCTCCCCCCGTGCCCTGGCAGTTAATTCCCGTCGAATGAATTTCTGAAATTGTTGAGTTTCTAGACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCGGTCAGTGTTTGAACTCTCAAAGGACTTAAATTACACATTTGGTTATAATGTTATTATCTATTGGCTTGCAATGAGTCCTCAGTTTTTGTGGATTATAGTGCCAAAAAAATCACGTCTTTTAAGTGCTCCTCTCCAAAAGACATTACTATGCTTGTAAAGTCCTCCCCTTTTATTTGATAGAGTAGATGTTTGTTACATCTACATGTCAAGGTAAGGGTAAAGAATCCGTACACTCTTACCATCTCATATAGAAATTTGTTGCATGAGTATCATGGGAAGTTCAAGTATATCATCGTGATAAGTGATTGCCAAGAACTGATGATAAGCTGCAGAAGTTCTTGAAAAACATGCATAGAGTAGTTTTTCCTTTTCTCGATGTCTCCGTTGTTTGTCATCCTTTAACTTACTGTCCAGCAAATTGAGTGGTTTCTCAACTTGTGTTGAAATTTGCAGGCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGTAGTAATTCGTGTGTGCTTCTC</genome_strand>
        <mrna_strand>AATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCTTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAA-TCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAG...............................................................................GCCAGGTCCTGCTGCCCAGTCATCTG.....................................................................................ACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGTAGTAATTCGTGTGTGCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456914" ref_strand="+" ref_description="SGN-E456914 [cPRO-1-E21]">
      <seq>gaaggatgaaaccttgcctcctgcgctattgggtagctgcaatgatcaggcaaaacaactccataactcaccttcaggaaggctactaactgcacttatatgtgaatatttggattgggctcaattaaaccacacacttaaggtgtatttgccagagtgtaacttgccaaaggagtcatggaaatctgagctaaaagaattcagcagcaagaatggatatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgctaggaagccttcttcatcttcagttgccggcgggttacctccgttgggaaggccaggttctgctgcgcagtcatctgacagaagggcaggttcatctatatccggatataggaaagatgaatacaactggagatatgaaaatgaagagctttcgcaagatgtaatgcttgcctcatctgccttagaaaaccttcaattggacagaaaagctcgaaaccttaccacttcatggcgacacagaggtgatggcatttctgaggatgatggcaggatggaataatagatgagattatatcatctccaaatcactaattatatgggagttgatgatatccttcaacttagaaatgcaatgttctaatgtacgctatgtatgatttatatacaatattgcttgtagtaatttgtgtgtgcttctcattttcgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="21096" stop="24732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21396" g_stop="21472" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="166" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23333" g_stop="23439" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="396" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23519" g_stop="23544" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="422" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23630" g_stop="23786" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="579" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24240" g_stop="24434" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="774" r_length="195" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E456914" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21396" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23439"/>
          <exon e_start="23519" e_stop="23544"/>
          <exon e_start="23630" e_stop="23786"/>
          <exon e_start="24240" e_stop="24434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAGGTTAACACATTAAATATTATCACTTATTTTACTTTTTCATTTGGATTTAAAATTGACTTGGAACCATTTTACCGCACAGGCCAGGTCCTGCTGCCCAGTCATCTGGTAAGTAATCTAGCTGACCCTCCTCCCCCCGTGCCCTGGCAGTTAATTCCCGTCGAATGAATTTCTGAAATTGTTGAGTTTCTAGACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCGGTCAGTGTTTGAACTCTCAAAGGACTTAAATTACACATTTGGTTATAATGTTATTATCTATTGGCTTGCAATGAGTCCTCAGTTTTTGTGGATTATAGTGCCAAAAAAATCACGTCTTTTAAGTGCTCCTCTCCAAAAGACATTACTATGCTTGTAAAGTCCTCCCCTTTTATTTGATAGAGTAGATGTTTGTTACATCTACATGTCAAGGTAAGGGTAAAGAATCCGTACACTCTTACCATCTCATATAGAAATTTGTTGCATGAGTATCATGGGAAGTTCAAGTATATCATCGTGATAAGTGATTGCCAAGAACTGATGATAAGCTGCAGAAGTTCTTGAAAAACATGCATAGAGTAGTTTTTCCTTTTCTCGATGTCTCCGTTGTTTGTCATCCTTTAACTTACTGTCCAGCAAATTGAGTGGTTTCTCAACTTGTGTTGAAATTTGCAGGCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGA-TTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGT</genome_strand>
        <mrna_strand>GAAGGATGAAACCTTGCCTCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAACTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTACTAACTGCACTTATATGTGAATATTTGGATTGGGCTCAATTAAACCACACACTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCATGGAAATCTGAGCTAAAAGAATTCAGCAGCAAGAATGGATATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGCTAGGAAGCCTTCTTCATCTTCAGTTGCCGGCGGGTTACCTCCGTTGGGAAG...............................................................................GCCAGGTTCTGCTGCGCAGTCATCTG.....................................................................................ACAGAAGGGCAGGTTCATCTATATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGAAACCTTACCACTTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAGGTGATGGCATTTCTGAGGATGATGGCAGGATGGAATAATAGATGAGATTATATCATCTCCAAATCACTAATTATATGGGAGTTGATGATATCCTTCAACTTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTT-ATATACAATATTGCTTGTAGTAATTTGTGTGTGCTTCTCATTTTCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319569" ref_strand="+" ref_description="SGN-E319569 [cTOB-15-B22]">
      <seq>acacatttaaggtgtatttgccagagtgtaacttgccaaaggagtcgtggaaatctgagctaaaagaatttagcagcaagaatgggtatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttcagttgccgggggcttaccaccgttaggaaggccaggtcctgctgcccagtcatctgacagaagggcaggttcatctgtatccggatataggaaagatgaatacaactggagatatgaaaatgaagagctttcgcaagatgtaatgcttgcctcatctgccttagaaaaccttcaattggacagaaaagctcggaaccttgccacttcatggcggcatagaggtgatggcatttctgagaatgatggcaggatggaataagattgagattatatcatctcgaaatcactaattatatgggaattgatgatatccttcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="22461" stop="24646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22761" g_stop="22795" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="158" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23333" g_stop="23439" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="265" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23519" g_stop="23544" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="291" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23630" g_stop="23786" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="448" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24240" g_stop="24346" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="555" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E319569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22761" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23439"/>
          <exon e_start="23519" e_stop="23544"/>
          <exon e_start="23630" e_stop="23786"/>
          <exon e_start="24240" e_stop="24346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAGGTTAACACATTAAATATTATCACTTATTTTACTTTTTCATTTGGATTTAAAATTGACTTGGAACCATTTTACCGCACAGGCCAGGTCCTGCTGCCCAGTCATCTGGTAAGTAATCTAGCTGACCCTCCTCCCCCCGTGCCCTGGCAGTTAATTCCCGTCGAATGAATTTCTGAAATTGTTGAGTTTCTAGACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCGGTCAGTGTTTGAACTCTCAAAGGACTTAAATTACACATTTGGTTATAATGTTATTATCTATTGGCTTGCAATGAGTCCTCAGTTTTTGTGGATTATAGTGCCAAAAAAATCACGTCTTTTAAGTGCTCCTCTCCAAAAGACATTACTATGCTTGTAAAGTCCTCCCCTTTTATTTGATAGAGTAGATGTTTGTTACATCTACATGTCAAGGTAAGGGTAAAGAATCCGTACACTCTTACCATCTCATATAGAAATTTGTTGCATGAGTATCATGGGAAGTTCAAGTATATCATCGTGATAAGTGATTGCCAAGAACTGATGATAAGCTGCAGAAGTTCTTGAAAAACATGCATAGAGTAGTTTTTCCTTTTCTCGATGTCTCCGTTGTTTGTCATCCTTTAACTTACTGTCCAGCAAATTGAGTGGTTTCTCAACTTGTGTTGAAATTTGCAGGCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACG</genome_strand>
        <mrna_strand>ACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAG...............................................................................GCCAGGTCCTGCTGCCCAGTCATCTG.....................................................................................ACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413352" ref_strand="-" ref_description="SGN-E413352 [STM-17-D6]">
      <seq>aaaagaattcagcagcaagaatggatatgatcttaccaggaatggtgacagtgctccattgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttcagttgctggggggttacctccgttgggaaggccaggtcctgctgcgcagtcatctgacagaagggcaggttcatctatatccggatataggaaagatgaatacaactggagatatgaaaatgaagagctttcgcaagattgtaatgcttgcctcatctgccttagaaaatcttcaattggacagaaaagctcggaaccttaccacttcatggcggcacagaggtgatggcatttctgaggatgatggcaggatggaatagatgagattatatcatctccaaatcactagttatatgggaattgatgatatccttcaacgtagaaatgcaatgttctaatgtacgctatgtatgatttatatacaatattgcttgtagtaaaaaaaaaaaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="22626" stop="24708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22926" g_stop="23022" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23333" g_stop="23439" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="204" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23519" g_stop="23544" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="230" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23630" g_stop="23786" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="388" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24240" g_stop="24407" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="553" r_length="165" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="566"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E413352" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413352" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22926" e_stop="23022"/>
          <exon e_start="23333" e_stop="23439"/>
          <exon e_start="23519" e_stop="23544"/>
          <exon e_start="23630" e_stop="23786"/>
          <exon e_start="24240" e_stop="24407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAGGTTAACACATTAAATATTATCACTTATTTTACTTTTTCATTTGGATTTAAAATTGACTTGGAACCATTTTACCGCACAGGCCAGGTCCTGCTGCCCAGTCATCTGGTAAGTAATCTAGCTGACCCTCCTCCCCCCGTGCCCTGGCAGTTAATTCCCGTCGAATGAATTTCTGAAATTGTTGAGTTTCTAGACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGA-TGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCGGTCAGTGTTTGAACTCTCAAAGGACTTAAATTACACATTTGGTTATAATGTTATTATCTATTGGCTTGCAATGAGTCCTCAGTTTTTGTGGATTATAGTGCCAAAAAAATCACGTCTTTTAAGTGCTCCTCTCCAAAAGACATTACTATGCTTGTAAAGTCCTCCCCTTTTATTTGATAGAGTAGATGTTTGTTACATCTACATGTCAAGGTAAGGGTAAAGAATCCGTACACTCTTACCATCTCATATAGAAATTTGTTGCATGAGTATCATGGGAAGTTCAAGTATATCATCGTGATAAGTGATTGCCAAGAACTGATGATAAGCTGCAGAAGTTCTTGAAAAACATGCATAGAGTAGTTTTTCCTTTTCTCGATGTCTCCGTTGTTTGTCATCCTTTAACTTACTGTCCAGCAAATTGAGTGGTTTCTCAACTTGTGTTGAAATTTGCAGGCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTA</genome_strand>
        <mrna_strand>AAAAGAATTCAGCAGCAAGAATGGATATGATCTTACCAGGAATGGTGACAGTGCTCCATTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCTGGGGGGTTACCTCCGTTGGGAAG...............................................................................GCCAGGTCCTGCTGCGCAGTCATCTG.....................................................................................ACAGAAGGGCAGGTTCATCTATATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATTGTAATGCTTGCCTCATCTGCCTTAGAAAATCTTCAATTGGACAGAAAAGCTCGGAACCTTACCACTTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGAGGTGATGGCATTTCTGAGGATGATGGCAGGATGGAAT-AGA-TGAGATTATATCATCTCCAAATCACTAGTTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTT-ATATACAATATTGCTTGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281249" ref_strand="-" ref_description="SGN-E281249 [cLEL-1-M15]">
      <seq>ttcatctgtatccggatataggaaagatgaatacaactggagatatgaaaatgaagagctttcgcaagatgtaatgcttgcctcatctgccttagaaaaccttcaattggacagaaaagctcggaaccttgccacttcatggcggcataaaggtgatggcatttctgagaatgatggcaggatggaataagattgagattatatcatctcgaaatcactaattatatgggaattgatgatatccttcaacgtagaaatgcaatgttctaatgggcgctatgtatgatttaatacaccacattgcttgtagtaaaaaaaaaaaaataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="23343" stop="88748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23643" g_stop="23786" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24240" g_stop="24404" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="309" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24405" i_stop="24934" i_length="530">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.130" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24935" g_stop="24957" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="332" r_length="23" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E281249" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281249" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23643" e_stop="23786"/>
          <exon e_start="24240" e_stop="24404"/>
          <exon e_start="24935" e_stop="24957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCGGTCAGTGTTTGAACTCTCAAAGGACTTAAATTACACATTTGGTTATAATGTTATTATCTATTGGCTTGCAATGAGTCCTCAGTTTTTGTGGATTATAGTGCCAAAAAAATCACGTCTTTTAAGTGCTCCTCTCCAAAAGACATTACTATGCTTGTAAAGTCCTCCCCTTTTATTTGATAGAGTAGATGTTTGTTACATCTACATGTCAAGGTAAGGGTAAAGAATCCGTACACTCTTACCATCTCATATAGAAATTTGTTGCATGAGTATCATGGGAAGTTCAAGTATATCATCGTGATAAGTGATTGCCAAGAACTGATGATAAGCTGCAGAAGTTCTTGAAAAACATGCATAGAGTAGTTTTTCCTTTTCTCGATGTCTCCGTTGTTTGTCATCCTTTAACTTACTGTCCAGCAAATTGAGTGGTTTCTCAACTTGTGTTGAAATTTGCAGGCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTTTCTTCTTTTTATTCTCTTCCCTTATCTCGATGTCCCTTGTGTGGCTAAGCAAGCGTGTTTCTAATGCAATTTTCGTCATGTTAATGGTTCTTGTGCTGGCATATGGGCATTTAAAATTAAGAGTTAAATGCTCAAAAATATAGCTAAATTATCATCTTTTTGCTACTTTTGTATCTCAACTATTCATTGTTCTTTCTTTGTATCCATCGAAACCCCCAATCACTTTGTTTTTTTAACCTATCTCAATCCATAGCTAGCGCATGTAGATTATCTCAACATTGAGGTGTGTTTTAGTATAAAGAGAAGATAATCATCTCGAAAAATTAAAGAAGAAAGAGGGGTAAGTTTCACAAATTACCAAAAAAAAATAGTTTGAAGCGGTCCATATCCAACGATCACATTAGCTCCCTAACTATGACACGAGGGCTATGTAGTTCTCTTTTGACTCTTTTCTTTCCTACAAGGTGTAGGCTACAACTGAAAACTATCAAGA</genome_strand>
        <mrna_strand>TTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAAAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGGGCGCTATGTATGATTTAATACACCACATTGCTTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404637" ref_strand="+" ref_description="SGN-E404637 [PPC-14-P13]">
      <seq>gtccaagttgctggaggagaaaaaatctgctgaactcagagctgaggagttggaaacagcattgatggagatggtcaagcaggataacaggcggcagttgagtgcacaggttgagcaattagaaagacaggttgctgagcttcgagaggtccttgttgctaagcaagagcaagagaatgccatgcttcaggttttgatgagggtggagcaagaacagagagtaacagaagatgctcgtatatttgctgaacaagaggcagcagctcaaagacatgcctctcaattgctacaggaaaagtatgaagaagccatcgcttcccttgctgagacggaaaagagggtggttatggcagaatcgatgttggaggctaccttgcagtaccaatctggacaagataaagtactaccttctccaagatctacgcagcaagtttcatctcctgtagggggcaaccaagaatcatcactagagatacctgctagaaagatcagtttgctctcaagaccgtttggacttggctggcgtgacagcaacaatgggaagcaagcagaggaggttaatgacaccaaaactgtgaatgaggagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="28926" stop="25224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28626" g_stop="28588" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28587" i_stop="27802" i_length="786">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27801" g_stop="27732" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27731" i_stop="27203" i_length="529">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27202" g_stop="27122" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="190" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27121" i_stop="26937" i_length="185">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26936" g_stop="26835" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="292" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26834" i_stop="26637" i_length="198">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26636" g_stop="26512" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="417" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26511" i_stop="26308" i_length="204">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26307" g_stop="26187" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="538" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26186" i_stop="25575" i_length="612">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25574" g_stop="25524" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="589" r_length="51" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E404637" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28626" e_stop="28588"/>
          <exon e_start="27801" e_stop="27732"/>
          <exon e_start="27202" e_stop="27122"/>
          <exon e_start="26936" e_stop="26835"/>
          <exon e_start="26636" e_stop="26512"/>
          <exon e_start="26307" e_stop="26187"/>
          <exon e_start="25574" e_stop="25524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAGTTGCTGGAGGAGAAAAAATCTGCTGAACTCAGGTGCATATTTCGTGTGTTAATGCTACTTTATATAGTGAAGCAATATTGTCCAGGTTGACTTTTCTCAAAAGTAGTCCTGGGAGAGTTGGAGTTCCAGTGTTTATGTGTTCCTTAGGAATGTGCTGATTTGAAACATCTAAGTAATATACTTTTGTGTAAATTTTCAAAAATTTATGATCGATGCTACGGCCTACAATCAAGCTGTAACCTTTATCTGAAGTCAAATGTTGAACTTCGGCTGCATCAACAATGACCTCTTTATCATAATTTAAGTAAAAGGTAGAAGTGAATAAAGAACTGAGGCCATGTCTCTGCCCTATCTGCTCTCCAAATCCCGTCTCTTGTGATATTTTACCACCTTTTCTCCTTAATCTTGTCCTTCCCACAGCACCGTCAAAATTCAAGTTTGGGGGAGTGAGACCAGATTATAACATGGGAAGGTGGTGCAAATTTAACTATTCAAAATGTTATAAGGTTCAGCTATAATTGTCTCAAGGGCGAGGGGGATCTCATCCCTGCCAGCGTCAAGCTGACTGAAAAAGTCACAAAAACTCTTACCCAAGAAACGGAAAATTACGATGTTTGCCGAGTGGCAGTTCAATTGTCCATTTAGGGAACCTGTTAAACTGTAGAAGGTTTCATTGAAGTTGAATATTTCTCAACTTCTGCTGCAAATCTAATTTGAGAGCTTTCGAATGATGAAATCTTTTACCTTGAAGCCAAGGGAACTAGATCTCATATTGATTGGGCACTGATCCTTTTCCTCAATTTTTTGCATGTCCACAGAGCTGAGGAGTTGGAAGCAGCATTGATGGAGATGGTCAAGCAGGATAACAGGCGGCAGTTGAGCGCACGGGTACTTAAGATGCTGCTTTATGAATGAATTATGTGCTCCCCCCCCCCCCCCCCACCCCCCACACACACCAAAGGAAAAATAATAACCCAGCTTCCAGTCTATTCCTACAAGCTTTCTTTTATGTGCCTTTCCTGTTTATAGAGCTGGTCTAACATTTATAGTTCGCTCCTGCTTACATTGATATCCCAGATTGAACTTGATTCCTGACAATAAATACAACTTTTATTCCTGAATATACACCTGAACCACATTCATCAATAAATAACACAATGTGCCATGAATCCAATCGGCTTACTGTGAGTGTGACTATGTGCTTCCATACAATCTTTTCAGTATGGATTGAAGACTTGAAGAATTTCTAGATGGTTAGCACAATAGACTGCATCACCATTTCCTTTTTAGTCTTTCTCTTCATATTCTGCTCCGTAATATGCTTATTTCTTTTTGGCATATATCGTCTTCCTTTTCCTTGAAAAAATTGAATTGATCACAATTATATCTGACCATTGACATTTTCTTTTGGACTCAGGTTGAGCAATTAGAAAGACAGGTTGCTGAGCTTCAAGAGGCCCTTGTTGCTAAGCAAGAACAAGAGAATGCCATGCTTCAGGTGACAATTAAATTCCTAGCTTGAAAGCATTCTTTGAAGCAAAAATTCCGAAAGTCCTCTGAAAAAAGAGGACGACGGGGGAGAGGCTGATGCGGCGGAGTCTATTGTCACTTGTTTGATGATGCATTGTAACATTATCTCCTAATCTCTCTATCTTAAATTCTGGGTTTATATATTTTTTGTAGGTTTTGATGAGGGTGGAGCAAGAACAGAGGGTAACAGAAGATGCTCGCATATTTGCTGAACAAGAGGCAGCAGCTCAAAGACATACCTCTCAATTGCTACAGGTTTCTTCTTGATCAAATTTCGTGGCGAAACATTTGGATTTCTAGTTCTTAATCTGGGAATTCTTACTCAGCCGGATTCTTTGTGTTTTTCTTCTCAAACCTATCTAGTTCATGATTTCATGCATGATGGTGGAATTTAAATATGACATTGTTGGCTGATATATTGAACATCCTGCTTGTCTTTGCAACAACCTGCAGGAAAAGTATGAAGAAGCCATCGCTTCCCTTGCTGAGACGGAAAAGAGGGTGGTTATGGCAGAATCGATGTTGGAGGCTACCTTGCAGTACCAATCTGGACAAGATAAAGTGCTTCCCTCTCCAAGGTATATACACATACTTACATTTTCTAATTTTGTCGCGTTATTAAACACCATGTGCTGGTGATCGTGGTGTTATTTACTGCAACTGCTTCATCGGTTGCCAAAGGACAATACATGCGTATGTATGTAGTAATAAGAAAAACATACTACCTTCATTAATGCATAGCTTGTATTTTGTCTAACATGGAAGAATATGTTCTTTTATAGATCTACGCAGCAAGTTTCATCTCCTGTAGGGGGCAACCAAGAATCATCACTAGAGATACCTGCTAGAAAAATCAGTTTGCTCTCAAGACCGTTTGGACTTGGCTGGCGTGACAGCAACAAGGTATGTCCTTAAGTTTCTCCAATTCAGGGATGAAATCTAGTTCTCTAGCAGTTATTAGACATCACATGTGCACTTGTAAGACGGCCAGACTCCAGCCTTCACGATTTATGATAAGATATATAACTAAATACTAATGAAATTGTCCTATATCTTCCTACTCTTTTGTGCAATATATCCATGTAACACATACTTAATTCCAAAGTACAAAATCCCTTTTAAAGAATTAGCACTTGATAGTATAACCGCAGATTATCTTACAGAAAAGTTACATAAACCCAGACATCTCATTGGTGGTCGAAGTTGTAGTAGTATGGCTTCTTTACAACAACATACCCAATGTAATTCCACAAGTGAGCATGTACATAGACCTTAACCCTACCTTAGTGAGGTAAATAAGTTGTTTCCGATAGACCCTCAACTCAAAAGAAAAGTTTCAACGAATCATAATTGCAATAATAATATGACAATAAATAACACAAGATACAAACCAAATGAGACAACAGGTAGTAATATGCATTGAAAAAATATATGAGCCATCCGGTTTCTTTGTTCCTTAAAAACCAAGCTACAGCTGGTTCTAATATCCGGTATAAAAATAATTGAGTGAAACAGGGGAAGCCGACCGAGGAGGTTAATGACACCAAAACAGTGAATGAGGAGCAG</genome_strand>
        <mrna_strand>GTCCAAGTTGCTGGAGGAGAAAAAATCTGCTGAACTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAGGAGTTGGAAACAGCATTGATGGAGATGGTCAAGCAGGATAACAGGCGGCAGTTGAGTGCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCAATTAGAAAGACAGGTTGCTGAGCTTCGAGAGGTCCTTGTTGCTAAGCAAGAGCAAGAGAATGCCATGCTTCAG.........................................................................................................................................................................................GTTTTGATGAGGGTGGAGCAAGAACAGAGAGTAACAGAAGATGCTCGTATATTTGCTGAACAAGAGGCAGCAGCTCAAAGACATGCCTCTCAATTGCTACAG......................................................................................................................................................................................................GAAAAGTATGAAGAAGCCATCGCTTCCCTTGCTGAGACGGAAAAGAGGGTGGTTATGGCAGAATCGATGTTGGAGGCTACCTTGCAGTACCAATCTGGACAAGATAAAGTACTACCTTCTCCAAG............................................................................................................................................................................................................ATCTACGCAGCAAGTTTCATCTCCTGTAGGGGGCAACCAAGAATCATCACTAGAGATACCTGCTAGAAAGATCAGTTTGCTCTCAAGACCGTTTGGACTTGGCTGGCGTGACAGCAACAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCAAGCAGAGGAGGTTAATGACACCAAAACTGTGAATGAGGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287239" ref_strand="+" ref_description="SGN-E287239 [cLES-15-C9]">
      <seq>tgaagttcacctctaccgctgccgattaaatcactgttttaagcaatctcacaataaaagaaacgaattgatccccagaatggcgttaacgaactttatactgacagttgcgggagtgagcgctgtggttttattgatgaggagcgatgttaaacagtctgcttccatcttcaagcgcaatgttcgtcaaattcgccattggcttgaggaagagtctgcttccgcggctaagggaatagagaaggcaaagccgaaggagatatctcagaaggacatccccaaagacgacaaacactagatttgactcatacttatcagatgccttgcgatttcccagctaccatttcagattttgttccataacatgtgactaatttagactccccattagtgtaagtatcctgttaaatatacttttaccatttttggtattggcaaaatgagctattttcacatactgtgtcaccatagagctttcaaaatactagtaattgacatgactgaactctcttgtaagttgtaataatcatgatctctcagattctcttgtatctttgaagctactaggtcaaataacatttgacacatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="38470" stop="35908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38170" g_stop="38136" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38135" i_stop="37855" i_length="281">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37854" g_stop="37659" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="231" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37658" i_stop="36567" i_length="1092">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36566" g_stop="36209" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="589" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="603"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E287239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38170" e_stop="38136"/>
          <exon e_start="37854" e_stop="37659"/>
          <exon e_start="36566" e_stop="36209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAAGTATGTCGTCTACTCGTCTTACTCTTCCCTGTTTCTAATCAAGCATTTGTTCGGTTCATTTTTTGTTATCTGGTTGAAGTTAGTCGTCTTGTGCTTATAGTTTGCATTTAGTCATCTCTGTTTGGATTGAAAAAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAACTGACCATATTCGTAGAATTATTCGTGTTATTGTACAAAGGTAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAATTGACCATATTCGTAGAATTAGTCGTGTTATTGTATAAAGGTAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAACTGACCATATTCGTAGAATTAGTCGTGTTAATGTACAAAGGTAGCAGTGTGAGAAGTAATTGACTCGCTTAACACTAATCAGTTCTAGGTAGAATCTTCTTGGTTCTGGTCTTACTGCTAATTTCCTCCATAAACTCGAAATTTGCCATATCTGCTATCGGTCTTTCACGCATTATACCTTTGGGTAGAAAGAAAGTACTCTGTTGAAGAGAAGAAAGGTCTCAAAATGGTTCGGTTCAGTTGTTCGTTCCACTCACACATTTAGCGTTCAGCCTCCTATGCTATGCTATTGGTATTACAGCTCGATAACTGGCCAATTAGTGTCCAAGCATAGAGAAAGTTATTGCCTCATTTTGCTAGTAAACATTGGATCTCGATATCTTCTGGTATACCATGAAGTTTGTATTATATGTTATATCCAAAAATAGTTTGGGAATATGATAGCAAAATTCAATGCATAATAACATGAAAGAATGTGTTTTATTCTATAGCTAGAAGCATAAGTCCCATAGAAAACTGTTTTATGAATTTTATTCTTGACATGTAAGTTCGACTTCAAAAACTCTTTCTCCTTGCACGTCTTTTTTTTTCATTAATCATTTCTTGTCTTCTCATGTATCTTAATCTTTGCTCATCTCATCATATTTGTTTCTCTTTATATTGAATCCTTCGCTTCTGCTTGTTTGGTTATTAGTTTGCAGTCGTCATTCTGTTTATGTGTAAGAGATACGCGTGACATGCCATTGATATTTTTGTAGGGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACACATC</genome_strand>
        <mrna_strand>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACT.........................................................................................................................................................................................................................................................................................GTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339497" ref_strand="+" ref_description="SGN-E339497 [cTOE-16-E11]">
      <seq>ggcgttctcctgaagttcacctctaccgctgccgattaaatcactgttttaagcaatctcacaataaaagaaacgaattgatccccagaatggcgttaacgaactttatactgacagttgcgggagtgagcgctgtggttttattgatgaggagcgatgttaaacagtctgcttccatcttcaagcgcaatgttcgtcaaattcgccattggcttgaggaagagtctgcttccgcggctaagggaatagagaaggcaaagccgaaggagatatctcagaaggacatccccaaagacgacaaacactagatttgactcatacttatcagatgccttgcgatttcccagctaccatttcagattttgttccataacatgtgactaatttagactccccattagtgtaagtatcctgttaaatatacttttaccatttttggtattggcaaaatgagctattttcacatactgtgtcaccatagagctttcaaaatactagtaattgacatgactgaactctcttgtaagttgtaataatcatgatctctcagattctcttgtatctttgaagctactaggtcaaataacatttgacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="38480" stop="35911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38180" g_stop="38136" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38135" i_stop="37855" i_length="281">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37854" g_stop="37659" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="241" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37658" i_stop="36567" i_length="1092">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36566" g_stop="36212" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="596" r_length="355" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="606"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E339497" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38180" e_stop="38136"/>
          <exon e_start="37854" e_stop="37659"/>
          <exon e_start="36566" e_stop="36212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTTCTCCTGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAAGTATGTCGTCTACTCGTCTTACTCTTCCCTGTTTCTAATCAAGCATTTGTTCGGTTCATTTTTTGTTATCTGGTTGAAGTTAGTCGTCTTGTGCTTATAGTTTGCATTTAGTCATCTCTGTTTGGATTGAAAAAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAACTGACCATATTCGTAGAATTATTCGTGTTATTGTACAAAGGTAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAATTGACCATATTCGTAGAATTAGTCGTGTTATTGTATAAAGGTAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAACTGACCATATTCGTAGAATTAGTCGTGTTAATGTACAAAGGTAGCAGTGTGAGAAGTAATTGACTCGCTTAACACTAATCAGTTCTAGGTAGAATCTTCTTGGTTCTGGTCTTACTGCTAATTTCCTCCATAAACTCGAAATTTGCCATATCTGCTATCGGTCTTTCACGCATTATACCTTTGGGTAGAAAGAAAGTACTCTGTTGAAGAGAAGAAAGGTCTCAAAATGGTTCGGTTCAGTTGTTCGTTCCACTCACACATTTAGCGTTCAGCCTCCTATGCTATGCTATTGGTATTACAGCTCGATAACTGGCCAATTAGTGTCCAAGCATAGAGAAAGTTATTGCCTCATTTTGCTAGTAAACATTGGATCTCGATATCTTCTGGTATACCATGAAGTTTGTATTATATGTTATATCCAAAAATAGTTTGGGAATATGATAGCAAAATTCAATGCATAATAACATGAAAGAATGTGTTTTATTCTATAGCTAGAAGCATAAGTCCCATAGAAAACTGTTTTATGAATTTTATTCTTGACATGTAAGTTCGACTTCAAAAACTCTTTCTCCTTGCACGTCTTTTTTTTTCATTAATCATTTCTTGTCTTCTCATGTATCTTAATCTTTGCTCATCTCATCATATTTGTTTCTCTTTATATTGAATCCTTCGCTTCTGCTTGTTTGGTTATTAGTTTGCAGTCGTCATTCTGTTTATGTGTAAGAGATACGCGTGACATGCCATTGATATTTTTGTAGGGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACAC</genome_strand>
        <mrna_strand>GGCGTTCTCCTGAAGTTCACCTCTACCGCTGCCGATTAAATCACT.........................................................................................................................................................................................................................................................................................GTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274807" ref_strand="+" ref_description="SGN-E274807 [cLEN-13-B19]">
      <seq>tgaagttcacctctaccgctgccgattaaatcactgtaattcaatttcttcacttaggttacgttttcatttttttgttcgatttcttgtttcttaatgaatgtgataatttctatcgattcgtgttacaaaatatttgtgttttgttgttgttgctttttttttttgtaagcttataaacaatatgatgttatgaattcgatatggtaatttgtgcgttgttgttgttcttgttattttcggaactgtttacttttacattcaaattgaatcactgtacgatcatatattgattctctacttgattaattgcaaggttttaagcaatctcacaataaaagaaacgaattgatccccagaatggcgttaacgaactttatactgacagttgcgggagtgagcgctgtggttttattgatgaggagcgatgttaaacagtctgcttccatcttcaagcgcaatgttcgtcaaattcgccattggcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="38470" stop="37383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38170" g_stop="37683" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E274807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38170" e_stop="37683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGA</genome_strand>
        <mrna_strand>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452855" ref_strand="+" ref_description="SGN-E452855 [cSTS-18-M5]">
      <seq>aagcctttgtgcgtattattaccaaaaaaaataaaattgacgatgctcgtggggctcaaactcaaagctgtggtctctatttatggccacatgccctacaatttttaccgcaccttctcctccaccgccgcgccaacaacaaattttccggtggtgccgacacacatataccgttgccggaggatctcaactccggcgccgggattcttgaaggtctcagttttttcctgtcagaaggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaacaaggaggatcaccacagggagaagacattgaggtcgtcgtcgtcgtcatcagctccatcaaagtctgccaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctacgttgatagctggtggggaccaaccgctacaacaggtatatttattgctgcagcaataactgattggcttgatggatatcttgctcgcaagatgaacttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggtcgctgccaccttgatcttgttgtgcaccaaacctttggaggctagtttgtttggacaattgccatggctactaactgtaccttcaattgctataattggcagggagataactatgtctgcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39545" stop="43627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39845" g_stop="40290" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="543" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="594" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="708" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43310" g_stop="43327" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="726" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E452855" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39845" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTTTGTGCGTATTATTACCAAAAAAAAATAAAATTGACGATGCTCGTGGGGCTCAAACTCAAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTT</genome_strand>
        <mrna_strand>AAGCCTTTGTGCGTATTATTACC-AAAAAAAATAAAATTGACGATGCTCGTGGGGCTCAAACTCAAAGCTGTGGTCTCTATTTATGGCCACATGCCCTACAATTTTTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTTCCGGTGGTGCCGACACACATATACCGTTGCCGGAGGATCTCAACTCCGGCGCCGGGATTCTTGAAGGTCTCAGTTTTTTCCTGTCAGAAGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAACAAGGAGGATCACCACAGGGAGAAGACATTGAGGTCGTCGTCGTCGTCATCAGCTCCATCAAAGTCTGCCAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTACGTTGATAGCTGGTGGGGACCAACCGCTACAACAGGTATATTTATTGCTGCAGCAATAACTGATTGGCTTGATGGATATCTTGCTCGCAAG.............................................................................................ATGAACTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTCGCTGCCACCTTGATCTTGTTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTGCCATGGCTACTAACTGTACCTTCAATTGCTATAATTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424635" ref_strand="+" ref_description="SGN-E424635 [STM-43-J22]">
      <seq>aagcctttgtgcgtattattaccaaaaaaaataaaattgacgatgctcgtggggctcaaactcaaagctgtggtctctatttatggccacatgccctacaatttttaccgcaccttctcctccaccgccgcgccaacaacaaattttccggtggtgccgacacacatataccgttgccggaggatctcaactccggcgccgggattcttgaaggtctcagttttttcctgtcagaaggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaacaaggaggatcaccacagggagaagacattgaggtcgtcgtcgtcgtcatcagctccatcaaagtctgccaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctacgttgatagctggtggggaccaaccgctacaacaggtatatttattgctgcagcaataactgattggcttgatggatatcttgctcgcaagatgaacttangaactgcctttggtgcatttttagatccagtggctgataagctaatggtcgctgccaccttgatcttgntgtgcaccaaacctttggaagctagtttgtttggacattgccatggctactaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39545" stop="41997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39845" g_stop="40290" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="543" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="594" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41697" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="677" r_length="83" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E424635" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39845" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTTTGTGCGTATTATTACCAAAAAAAAATAAAATTGACGATGCTCGTGGGGCTCAAACTCAAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACT</genome_strand>
        <mrna_strand>AAGCCTTTGTGCGTATTATTACC-AAAAAAAATAAAATTGACGATGCTCGTGGGGCTCAAACTCAAAGCTGTGGTCTCTATTTATGGCCACATGCCCTACAATTTTTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTTCCGGTGGTGCCGACACACATATACCGTTGCCGGAGGATCTCAACTCCGGCGCCGGGATTCTTGAAGGTCTCAGTTTTTTCCTGTCAGAAGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAACAAGGAGGATCACCACAGGGAGAAGACATTGAGGTCGTCGTCGTCGTCATCAGCTCCATCAAAGTCTGCCAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTACGTTGATAGCTGGTGGGGACCAACCGCTACAACAGGTATATTTATTGCTGCAGCAATAACTGATTGGCTTGATGGATATCTTGCTCGCAAG.............................................................................................ATGAACTTANGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTCGCTGCCACCTTGATCTTGNTGTGCACCAAACCTTTGGAAGCTAGTTTGTTTGGAC-ATTGCCATGGCTACTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707510" ref_strand="+" ref_description="SGN-E707510 [FA33AH05]">
      <seq>ccattatcaaagctgtggcctctatttatggccacatgccctacaatttctaccgcaccttctcctccaccgccgcgccaacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacatgtatatttattgctgcagcaataactgattggctagatggatatcttgctcgcaagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattgctataattggcagggagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactttcagaggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatggtctctggtcgtatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39607" stop="44039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39901" g_stop="40290" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="488" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="539" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="653" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43310" g_stop="43366" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="710" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="796" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43649" g_stop="43739" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="887" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E707510" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39901" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="43739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCAAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATG</genome_strand>
        <mrna_strand>CCATTATCAAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAG.............................................................................................ATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378659" ref_strand="+" ref_description="SGN-E378659 [TUS-15-A14]">
      <seq>aaagctgtggcctctatttatggccacatgccctacaatttctaccgcaccttctcctccaccgccgcgccaacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacatgtatatttattgctgcagcaataactgattggctagatggatatcttgctcgcaagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattgctataattggcagggagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactttcagaggctgttgctgtgaataacttgggggagtggaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39609" stop="44020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39909" g_stop="40290" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="645" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43310" g_stop="43366" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="702" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="787" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43649" g_stop="43720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="859" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E378659" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39909" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="43720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATG</genome_strand>
        <mrna_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAG.............................................................................................ATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGGAGTGG-AAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379914" ref_strand="+" ref_description="SGN-E379914 [TUS-1-J21]">
      <seq>aaagctgtggcctctatttatggccacatgccctacaatttctaccgcaccttctcctccaccgccgcgccaacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacatgtatatttattgctgcagcaataactgattggctagatggatatcttgctcgcaagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattgctataattggcagggagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactttcagaagctgttgctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39609" stop="43669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39909" g_stop="40290" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="645" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43310" g_stop="43366" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="702" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43455" g_stop="43467" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="715" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E379914" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39909" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43366"/>
          <exon e_start="43455" e_stop="43467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGA</genome_strand>
        <mrna_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAG.............................................................................................ATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAA........................................................................................GCTGTTGCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375767" ref_strand="+" ref_description="SGN-E375767 [TUS-15-A14]">
      <seq>aaagctgtggcctctatttatggccacatgccctacaatttctaccgcaccttctcctccaccgccgcgccaacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacatgtatatttattgctgcagcaataactgattggctagatggatatcttgctcgcaagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattgctatatttggcagggagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39609" stop="43660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39909" g_stop="40290" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="645" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43310" g_stop="43360" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="696" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E375767" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39909" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTT</genome_strand>
        <mrna_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAG.............................................................................................ATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATATTTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201778" ref_strand="+" ref_description="SGN-E201778 [cLEC-11-D21]">
      <seq>aaagctgtggcctctatttatggccacatgccctacaatttctaccgcaccttctcctccaccgccgcgccaacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39609" stop="40585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39909" g_stop="40285" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E201778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39909" e_stop="40285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGT</genome_strand>
        <mrna_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456351" ref_strand="+" ref_description="SGN-E456351 [cSTS-29-C18]">
      <seq>ccaacaaccaaattttccggtggtgccgacacacatttaccgttgccggaggaatctcaactccggcgccgggattcttgaaggtctcagttttttcctgtcagaaggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaacaaggaggatcaccaccgggagaagacattgaggtcgtcgtcgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacaggtatatttattgctgcagcaataactgattggcttgatggatatcttgctcgcaagatgaacttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggtcgctgccaccttgatcttgttgtgcaccaaacctttggaggctagtttgtttggacaattgccatggctactaactgtaccttcaattgctataattggcagggagataactatgtctgcagttagagaatgggcagcttctcagggtggtaaactttcagaagctgttgctgtgaataacttggggaaagtggaaactgccactcagatgactgcattgaccatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39678" stop="43819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39978" g_stop="40290" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="464" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="578" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43310" g_stop="43366" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="635" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43455" g_stop="43519" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="700" r_length="65" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E456351" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39978" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43366"/>
          <exon e_start="43455" e_stop="43519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAA-CAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGG-ATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCT</genome_strand>
        <mrna_strand>CCAACAACCAAATTTTCCGGTGGTGCCGACACACATTTACCGTTGCCGGAGGAATCTCAACTCCGGCGCCGGGATTCTTGAAGGTCTCAGTTTTTTCCTGTCAGAAGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAACAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGTCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACAGGTATATTTATTGCTGCAGCAATAACTGATTGGCTTGATGGATATCTTGCTCGCAAG.............................................................................................ATGAACTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTCGCTGCCACCTTGATCTTGTTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTGCCATGGCTACTAACTGTACCTTCAATTGCTATAATTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTTAGAGAATGGGCAGCTTCTCAGGGTGGTAAACTTTCAGAA........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAAGTGGAAACTGCCACTCAGATGACTGCATTGACCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738047" ref_strand="+" ref_description="SGN-E738047 [LC12AF11]">
      <seq>cctacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacatgtatatttattgctgcagcaataactgattggctagatggatatcttgctcgcaaggtacatgcttctgctgttcaatagaatcattttttctcgaattataatttcttatatttcaactttcaaaattggctggtttgacacgtccagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataaggtattttctctttattcttcaattcacatggtattacctggaagtttggccagtttgctagtgttgctaccattatccataatgtttgagactcttcagcataattgcttgtaatgaaagagcagacattttttgatacaactcttcttgacttcaacagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39678" stop="42010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39978" g_stop="40290" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41710" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="812" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E738047" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39978" e_stop="40290"/>
          <exon e_start="41212" e_stop="41710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTG</genome_strand>
        <mrna_strand>CCTACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622390" ref_strand="+" ref_description="SGN-E622390 [72756]">
      <seq>tcaaccgctacaacaggtatatttattgctgcagcaataactgattggcttgatggatatcttgctcgcaagatgaacttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggtcgctgccaccttgatcttgttgtgcaccaaacctttggaggctagtttgtttggacaattgccatggctactaactgtaccttcaattgctataattggcagggagataactatgtctgcagttagagaatgggcagcttctcagggtggtaaactttcagaggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttctccttaccagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctttatggtctctggtcgtgtatatgagaaagatatcgaaagtattgttgatgtagaaatcatggccaatgatcacattgtggctcatgctactagctgtggagaagcaggttgtacacaagctgatccatgattctgcaaaagggaaactgcacttttgcagttgcatctcgactacgaagtgaagttgctaacttaattctgacatacctcggccccatatttatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="40939" stop="44242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41238" g_stop="41309" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="123" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="237" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43310" g_stop="43366" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="294" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="380" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43649" g_stop="43942" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="674" r_length="294" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E622390" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41238" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="43942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAA-GGAAACTGC-CCTTTGCAGTTGCATCTCGACTACG-AGGGAAGTTGCTAACTTAATTCTGACATGCCTC-GCCCCATATTTATCC</genome_strand>
        <mrna_strand>TCAACCGCTACAACAGGTATATTTATTGCTGCAGCAATAACTGATTGGCTTGATGGATATCTTGCTCGCAAG.............................................................................................ATGAACTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTCGCTGCCACCTTGATCTTGTTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTGCCATGGCTACTAACTGTACCTTCAATTGCTATAATTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTTAGAGAATGGGCAGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTCCTTACCAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTTTATGGTCTCTGGTCGTGTATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATG---A-TCACATTGTGGCTCATGCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGGAAACTGCACTTTTGCAGTTGCATCTCGACTACGAAGTGAAGTTGCTAACTTAATTCTGACATACCTCGGCCCCATATTTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462848" ref_strand="+" ref_description="SGN-E462848 [cPRO-12-L6]">
      <seq>cttctctgaaacatgcaagcactgatcgtcttagattgaaaagaaagaggcatttgagagctcttgataacatggattggaactgtgcgtattcttgataaaccttattgttaactggatttttagagtattaagttttgcatagtatgtgatctttctggtctttgagatatcttggtccatatttagcctgggagtcgcttttgctcaaggtgcaatatctgtttttccatgatgctcttttattaccttttctcaaatatacatcatacgatgcttttccatgttcctcgaaaatcttttcactgcatctttagttatttttcattgtggatgaatgataaacactgttttttttattcattttgcaaatctttttgtagataactatgtctgcagttagagaatgggcagcttctcagggtggtaaactttcagaggctgttgctgtgaataacttgnggaagtggaaaactgccactcagatgactgcattgaccatccttctccttaccagagatagcagtttatcaggggcgggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctttatggtctctggtcgtgtatatgagaaagatatcgaaagtattggtgatgtagaaatcatggcccatgatcacattttggctcatgctactagctgtggagaagcaggttgtacacaagctgatccatgattctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="42609" stop="44156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42909" g_stop="43366" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="526" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43649" g_stop="43856" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="730" r_length="204" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E462848" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42909" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="43856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTA-TTTTCATTGTGGATGAGTGATAAACACTG-TTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGC</genome_strand>
        <mrna_strand>CTTCTCTGAAACATGCAAGCACTGATCGTCTTAGATTGAAAAGAAAGAGGCATTTGAGAGCTCTTGATAACATGGATTGGAACTGTGCGTATTCTTGATAAACCTTATTGTTAACTGGA--TTTTTAGAGTATTAAGTTTTGCATAGTATGTGATCTTTCTGGT-CTTTGAGATATC-TTG-GTCCATATTTAGCCTGGGAGTCGCTTTTGCTCAAGGTGCAATATCTGTTTTTCCATGATGCTCTTT-T-AT-T---AC-CTTT--T--C----TCAAATATACATCATACGATGCTTTTCCATGTTCCTCGAAAATCTTTTCACTGCATCTTTAGTTATTTTTCATTGTGGATGAATGATAAACACTGTTTTTTTTATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCAGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGNGGAAGTGGAAAACTGCCACTCAGATGACTGCATTGACCATCCTTCTCCTTACCAGAGATAGCAG............................................................................................................TTTATCAGGGGCGGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTTTATGGTCTCTGGTCGTGTATATGAGAAAGATATCGAAAGTATTGGTGATGTAGAAATCATGGCCCATG---A-TCACATTTTGGCTCATGCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544908" ref_strand="+" ref_description="SGN-E544908 [TUS-67-H18]">
      <seq>gcttagattgaaaagaaagaggaattcgagagctcttgagaacatggattggaactgtgggtactcttgatgaaccttattgttcacttgatttttttcgattattaagttttgcatagtatgtagtctttctgatagtctgtgagatcatagtgtccatatttagcctggtagtcgcttttgctcaaggtgcgatatctttttttccaatatgatatttatgatatgacactctttggtacctttttcaaatatacatcatatgatgctcttccatgttcctcgaaaatcttttccctgcatcattagttattttcattgtggatgagtgataaacactgttttttgattcattttgcaaatctttttgtagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactttcagaggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatggtctctggtcgtatatatgagaaagatatcgaaagtattgttgatgtagaaatcatggccaatgatcactcacattttggctcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="42637" stop="44108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42937" g_stop="43366" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="516" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43649" g_stop="43808" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="676" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E544908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42937" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="43808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCT</genome_strand>
        <mrna_strand>GCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309286" ref_strand="+" ref_description="SGN-E309286 [cLEY-22-H11]">
      <seq>cttagattgaaaagaaagaggaattcgagagctcttgagaacatggattggaactgtgggtactcttgatgaaccttattgttcacttgatttttttcgattattaagttttgcatagtatgtagtctttctgatagtctgtgagatcatagtgtccatatttagcctggtagtcgcttttgctcaaggtgcgatatctttttttccaatatgatatttatgatatgacactctttggtacctttttcaaatatacatcatatgatgctcttccatgttcctcgaaaatcttttccctgcatcattagttattttcattgtggatgagtgataaacactgttttttgattcattttgcaaatctttttgtagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactttcagaggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatggtctctggtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="42638" stop="44032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42938" g_stop="43366" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="515" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43649" g_stop="43732" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="599" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E309286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42938" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="43732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGT</genome_strand>
        <mrna_strand>CTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379801" ref_strand="+" ref_description="SGN-E379801 [TUS-1-J21](-)">
      <seq>gcagttagagaatgggcggcttctcagggtggtaaactttcagaggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatggtctctggtcgtatatatgagaaagatatcgaaagtattgttgatgtagaaatcatggccaatgatcactcacattttggctcattctactagctgtggagaagcaggttgtacacaagctgatccatgattctgcaaaaggaaactgccctttgcagttgcatctcgactacgagggaagttgctaacttaattctgacatgcctcgccccatatttatcccgtgtactttggttgtgacagagagaaatgaaaaatgctggctgtgttcaacgtttgcttttccacttcattctttaaccatattctttagtgaaattggaggctcaataggaatattactatatcattaaatacatggaatttgcgatatctattgtaatcgattctgataggaaaaatttatactcaaatatcgttccggttgaaccggactgatcgatggctcattcggatcaatattgctatacacattgcaataactgtttgtcatgcaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="43022" stop="44522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43322" g_stop="43366" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="131" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43649" g_stop="44222" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="705" r_length="574" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E379801" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43322" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="44222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAAT</genome_strand>
        <mrna_strand>GCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCATTCGGATCAATATTGCTATACACATTGCAATAACTGTTTGTCATGCAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375766" ref_strand="+" ref_description="SGN-E375766 [TUS-15-A14](-)">
      <seq>ggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatggtctctggtcgtatatatgagaaagatatcgaaagtattgttgatgtagaaatcatggccaatgatcactcacattttggctcattctactagctgtggagaagcaggttgtacacaagctgatccatgattctgcaaaaggaaactgccctttgcagttgcatctcgactacgagggaagttgctaacttaattctgacatgcctcgccccatatttatcccgtgtactttggttgtgacagagagaaatgaaaaatgctggctgtgttcaacgtttgcttttccacttcattctttaaccatattctttagtgaaattggaggctcaataggaatattactatatcattaaatacatggaatttgcgatatctattgtaatcgattctgataggaaaaatttatactcaaatatcgttccggttgaaccggactgatcgatggctccttcggatcaatattgctatacacattgcagtaactgtttgtcatgcaataaattatgcacgaggtgtttgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="43154" stop="44547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43454" g_stop="43540" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43649" g_stop="44247" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="686" r_length="599" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E375766" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43454" e_stop="43540"/>
          <exon e_start="43649" e_stop="44247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTTGTTTACAGA</genome_strand>
        <mrna_strand>GGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTTGTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544907" ref_strand="+" ref_description="SGN-E544907 [TUS-67-H18](-)">
      <seq>gcagtttatcaggggctggaacttttgtagcttcgggggggatcttgctatatgtttcagcatggttagccgtatggtctctggtcgtatatttgggaaagattttgaaagttttgttgatgtagaaatcatggccaatgatcactcccattttggctcattttactagctggggagaagcaggttgtacccaagctgatccatgtttttgcaaaaggaaactcccctttgcagttgcattttgactacgggggaagttgctaaattaattttgacatgcctccccccatatttatcccgtgtactttggttgtgcccgggggaaatgaaaaatgcgggctgtgttcaacgtttgcttttccacttcattttttaaccattttttttagggaaattgggggctcaataggaatatttttttttccttaaatacctggaatttgggatatctattgtaatcgattttgataggaaaaatttatactcaaatattgttccggttgaaccggactgatcgatggctccttcggatcaatattgctatacccattgcagtaactttttgtcctgcaataaattatgcccggggtgtttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="43345" stop="44547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43645" g_stop="44238" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="649"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E544907" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43645" e_stop="44238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTT</genome_strand>
        <mrna_strand>GCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCGGGGGGGATCTTGCTATATGTTTCAGCATGGTTAGCCGTATGGTCTCTGGTCGTATATTTGGGAAAGATTTTGAAAGTTTTGTTGATGTAGAAATCATGGCCAATGATCACTCCCATTTTGGCTCATTTTACTAGCTGGGGAGAAGCAGGTTGTACCCAAGCTGATCCATGTTTTTGCAAAAGGAAACTCCCCTTTGCAGTTGCATTTTGACTACGGGGGAAGTTGCTAAATTAATTTTGACATGCCTCCCCCCATATTTATCCCGTGTACTTTGGTTGTGCCCGGGGGAAATGAAAAATGCGGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTTTTTAACCATTTTTTTTAGGGAAATTGGGGGCTCAATAGGAATATTTTTTTTTCCTTAAATACCTGGAATTTGGGATATCTATTGTAATCGATTTTGATAGGAAAAATTTATACTCAAATATTGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACCCATTGCAGTAACTTTTTGTCCTGCAATAAATTATGCCCGGGGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354253" ref_strand="+" ref_description="SGN-E354253 [cTOS-16-D19]">
      <seq>ccgtaacgaatatttctccggtggagactgcattggatttggctttaacagaaagtgcttttgcactaaggcttgttaattaattaattaattaattaattagtgtcatgaaaatgacactaaattaatttaattaattagttcattaatccatctctaagttagttttgttttaggcaataataaaatgtagtagtgttttttttcttttctaaagggcattatgcccttcagggttgtagtctttcttcgaaatctgtgtgaacatgaggtgttttgtgcatcgattgattagtaattcaagggttctttctttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="48118" stop="49036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48418" g_stop="48736" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="331"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E354253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48418" e_stop="48736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAACGAATATTTCTCCGGTGGAGACTGCATTGGATTTGGCTTTAACAGAAAGTGCTTTTGCACTAAGGCTTGTTAATTAATTAATTAATTAATTAATTAGTGTCATGAAAATGACACTAAATTAATTTAATTAATTAGTTCATTAATCCATCTCTAAGTTAGTTTTGTTTTAGGCAATAATAAAATGTAGTAGTGTTTTTTTTCTTTTCTAAAGGGCATTATGCCCTTCAGGGTTGTAGTCTTTCTTCGAAATCTGTGTGAACATGAGGTGTTTTGTGCATCGATTGATTAGTAATTCAAGGGTTCTTTCTTTCTT</genome_strand>
        <mrna_strand>CCGTAACGAATATTTCTCCGGTGGAGACTGCATTGGATTTGGCTTTAACAGAAAGTGCTTTTGCACTAAGGCTTGTTAATTAATTAATTAATTAATTAATTAGTGTCATGAAAATGACACTAAATTAATTTAATTAATTAGTTCATTAATCCATCTCTAAGTTAGTTTTGTTTTAGGCAATAATAAAATGTAGTAGTGTTTTTTTTCTTTTCTAAAGGGCATTATGCCCTTCAGGGTTGTAGTCTTTCTTCGAAATCTGTGTGAACATGAGGTGTTTTGTGCATCGATTGATTAGTAATTCAAGGGTTCTTTCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558885" ref_strand="+" ref_description="SGN-E558885 [18296]">
      <seq>ctgcagtatgaggttcaaatctgaagaagagctttcgaagcatatcacctcgtgtggtttcagggaattgcactgtgaaaatgagggatgtaatgctcgatttagtgcagctcagctggaactgcatgattcaacatgtccgttcaaaatactccaatgcgagcagaaatgcccagcaacactcatgaggcgtgaaatggacaggcactgtataactgtatgtccaatgaagcttgccaattgccccttctatccagtaggctgtgtatctactattcctcaatgcaaaacagaccaacaccgtctcgagaatcttctgcctcacttgacccacatcttaaaacttattcacaaggaagcatctttcgaggctttgaagaaaagggctgagcaattgttggaggcatcatcacctggacggctggcagctgctcgtgatgcaagatcattaacagttgcaatcaagagtattgatgcaaagcttggccctttggaagctgaggaaattaaagaggacaactgcagatgacgctgacttgaaagatgaaaaaaaggatagcactgatctatccaccaaaaaggattcttctattgacttgtctcataatgatgaacaatctccacagttttaattccacagattcaccggaccaaaatagtctcacctgacaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="55584" stop="57791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55884" g_stop="56286" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56287" i_stop="57060" i_length="774">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57061" g_stop="57237" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="581" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57238" i_stop="57399" i_length="162">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57400" g_stop="57491" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="675" r_length="94" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E558885" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55884" e_stop="56286"/>
          <exon e_start="57061" e_stop="57237"/>
          <exon e_start="57400" e_stop="57491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGTATGAGGTTCAAATCTGAAGAAGAGCTTTCGAAGCATATCACCTTGTGTGGTTTCAGGGAATTGCACTGTGAAAATGAGGGATGCAATGCCCGATTTAGTGCAGCTCAGCTGGAACTGCATGATTCAACATGTCCGTTCAAAATACTCCAATGCGAGCAGAAATGCCCAGAAACACTCATGAGGCGTGAAATGGACAGGCACTGTATAACTGTATGTCCAATGAAGCTTGCCAACTGCCCCTTCTATCCAGTAGGCTGTGTGTCTACTATTCCTCAATGCAAAACTGACCAACACCGTCTTGAGAATCTTCTGCCTCACTTGACCCACATCTTAAAACTTATTCATAAGGAAGCATCTTTCGAGGCTTTGAAGAAAAGGGCTGAACATTTGTTGGAGGTCAGTTATTAAATAGTGCCATTCTCTTTCTTTGGATATATTGAACTTACGTTAGTGCTTCTTTTGTTTGGAGTTTTTTTCTCTCGACGAGGCATTAAAATGTAGAGAAAGAAAAATAGAATGCCAAAATTGTAGAAATAGGAAGACCAAAATATGCACTTACATCTAACTAGTTGAGAAATTGGATTAGCAGTGATTTCTGTCCTGCCACTATTTTCCTTCCATTATCTCAAGTCTTTTTCTACTCTGTGACCCCGTTAGCAACACGAGGAGATATTGTAGGTGAAGAAAAATGGTACTCTTTCCGTTTCAAGTTGCTTGTCTTACTTTTCTTTCCGCCCGTTCGAAAAAGAATGCCTCTTTCTACTTTTGGCAACTCTTCAATCTCGACTTTCCACATGACAACATATCTAAGACCACAAGATTAAATGACATTTTGGTACTTTCTACATATCTTTAGTTTACGACCACAAGATTCCAAAGTCTTATTTACTTTCTTAAACTTCGTGCCAAATCAAAACCAGACAAACAATTTGAAACAACGGGAGTAATGTTCAAATGGATACTTCAGTCGAAAAATAACTATCACATGTTGCCTTGGCTGGCCAGTTCACAGTCTAATCAAGACAAAACTGAATGTTAGAGCTATTTATTGAATCTTATTCACAAAGGTGTTTCACCAGATTCTGGATATCCTTGCAGCTAAATTTGCAAGAAACTACTCTAACCATGAACACTCTTGATGTGTTGATATATTTTTTTCTTCACAAACAGGCATCATCACCTGGACGGCTGGCAGCTGCTCGTGATGCAAGATCATTAACAGTTGCAATCAAGCGTATTGATGCAAAGCTTGGACCTTTGGAAGCTGAGGAAATTAAAGAGGACAA-TGCAGATGACGCTGACTTGAAAGATGAAAAAAAGGATAGCACTGATCTATCCGCCAAAAAGGATAGCAGTGATCTATCCGCCAAAAAGGATAGCACTGATCTATCCGCCAAAAAGGATAGCAGTGATCTATCCGCCAAAAAGGATAGCACTGATCTATCCGCCAAAAAGGATAGCAGTGATCTATCCGCCAAAAAGGATAGCACTTATCTATCCGCCAAAAAGGATTGCTCTATTGACTTGTCTCATAATGATGAACAATCTCCACAG-CATAACTCCTCAGCTTCACCGCA-CAAAACAGTCTCACCTGACAAATC</genome_strand>
        <mrna_strand>CTGCAGTATGAGGTTCAAATCTGAAGAAGAGCTTTCGAAGCATATCACCTCGTGTGGTTTCAGGGAATTGCACTGTGAAAATGAGGGATGTAATGCTCGATTTAGTGCAGCTCAGCTGGAACTGCATGATTCAACATGTCCGTTCAAAATACTCCAATGCGAGCAGAAATGCCCAGCAACACTCATGAGGCGTGAAATGGACAGGCACTGTATAACTGTATGTCCAATGAAGCTTGCCAATTGCCCCTTCTATCCAGTAGGCTGTGTATCTACTATTCCTCAATGCAAAACAGACCAACACCGTCTCGAGAATCTTCTGCCTCACTTGACCCACATCTTAAAACTTATTCACAAGGAAGCATCTTTCGAGGCTTTGAAGAAAAGGGCTGAGCAATTGTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATCACCTGGACGGCTGGCAGCTGCTCGTGATGCAAGATCATTAACAGTTGCAATCAAGAGTATTGATGCAAAGCTTGGCCCTTTGGAAGCTGAGGAAATTAAAGAGGACAACTGCAGATGACGCTGACTTGAAAGATGAAAAAAAGGATAGCACTGATCTATCCACCAAAAAG..................................................................................................................................................................GATTCTTCTATTGACTTGTCTCATAATGATGAACAATCTCCACAGTTTTAATTCCACAGATTCACCGGACCAAAATAGTCTCACCTGACAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744948" ref_strand="+" ref_description="SGN-E744948 [GI|410483]">
      <seq>ctaaactaaccaaccaaaattccagtagagaaggaacgaaaatggcttcatctatgcttaccaaacagtttctcggggctccattttcaagcttcggatccgggcagcaaccatccaagctctgttcttcaaacctccgattccctactcaccgatcacagcccaaacgactagagatacaagctgctggtaatacatttggaaattatttccgcgttacaacgtttggagaatctcacggtggtggtgtcggttgtataattgatggatgtccccctcgactcccactctcagagtcggatatgcaagtggaacttgacaggaggaggccaggtcaaagccgaattaccacaccaagaaaagagactgatacttgcaaaatatcatcaggcactgctgatggtttgactacgggatctccaatcaaagttgaagtacccaacactgaccagagaggaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggaggtagatcctcagcaagagaaaccatcgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttccagaggatttagttgataaccagattgtgacactagagcagattgaaagcaatattgttcgttgcccgaaccctgaatatgcagaaaagatgattggtgccattgattatgtacgagtgaggggggattctgttggtggtgtcgtaacttgcattgttagaaatgttccacgaggtcttggtacaccagtctttgataaacttgaagctgagctggctaaagcttgcatgtcattaccagcaacaaagggttttgagtttggaagtggctttgcaggtactttcatgactggcagtgagcataatgatgagttctttatggatgaacatgaccaaatcaggacaaaaaccaatagatctggtggtatccagggaggcatatcaaatggagaaattattaatatgagagtagcattcaagccaacttctacaattgcaaggaagcaacatactgttagtagggataaacatgagactgaactcattgctcgtggtcgccatgatccttgtgtggttccacgagctgttccgatggtggaagcaatggtcgccctagtgctcgtggatcagttgatgactcaatatgcacaatgtatgctatttccagtcaatcttacactacaggaacctttgcagccatcgacaaccaagtcagcttaggttcccctttaaaaggagctgagcagtttgcgtacccccccccccccccattacaacttctcactacatggcttctcacatttctggcattctactacgtttggagagtgaaattttttgttaaaagaagttatcctcaacacatagagagttatattgttgaacagagaaatgtatatagattttgttgttggagctatcaccagtttgttgctccgacttttcaattatgtcttttgctatgtgttggatccttcaaaaatagtgcgtttttggagaatccatcataggcacaacaatatttttgaagagtctatacggagagacaagtacatctaaaaaaaatgtgaaattgtgacgttttcattattttataggcttttcttgtgtttgtaaactcaagttgtactcacataagattgttaacaatgtaatttgtataatacaaacatttacgatttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="70519" stop="61542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70219" g_stop="70046" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69084" g_stop="68934" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="325" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68664" g_stop="68588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="402" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68504" g_stop="68446" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="461" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="545" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="638" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66765" g_stop="66685" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="719" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64866" g_stop="64735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="851" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64626" g_stop="64524" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="954" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63158" g_stop="63064" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="955" r_stop="1049" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="62958" g_stop="62893" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1050" r_stop="1115" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="62802" g_stop="62718" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1116" r_stop="1200" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="62717" i_stop="62444" i_length="274">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62443" g_stop="61842" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1201" r_stop="1802" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E744948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70219" e_stop="70046"/>
          <exon e_start="69084" e_stop="68934"/>
          <exon e_start="68664" e_stop="68588"/>
          <exon e_start="68504" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66685"/>
          <exon e_start="64866" e_stop="64735"/>
          <exon e_start="64626" e_stop="64524"/>
          <exon e_start="63158" e_stop="63064"/>
          <exon e_start="62958" e_stop="62893"/>
          <exon e_start="62802" e_stop="62718"/>
          <exon e_start="62443" e_stop="61842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTAACCAACCAAAATTCCAGTAGAGAAGGAACGAAAATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAGGTGAAACTTTCTGTCATCCATCTGCTTGTCGAAATGCCTGAATGAACTTGATTTGAGGTTTCCATCTTTTATTCTGCTTTTTGTGTGAATTAAGGAAACGGGTTTTAATCTTTATTAGAATATGATCATTAAAATAGGAAAAAAAAGTAGTCTTGGAAATTTTTTATTTTTGTTTAATAATGGGGTAGGGGAAGGGGAAATGGGTGGGGAACTGAAACCATGAGTCTGGTAATTGGAATGAGTATAATCTAAATCTCGATCCATTGGAGGGCAAGTTTGGTGCCAACAGCGGCGGTAATTCCAGCTCTAATAGCATATATTTAAGTTGTAGTTAAAAAGGTCGTAGTTGAACTTACTAAGATTCCCAAGTCTATGAAGTTGATATCTCTTTTGTACTTTTTTTTTGTATATGTGATCATTCCACCATGTATGAATTCACCATCTTTTTTTTTCCTTTGTCGAAAATTTAACTTCAACTGTGGTGGGCTATGATTTTCAGTTCATCTTCATTATATGTTATCTGGATCTGTCAATGTTTTAAAATATTATCTCATGTTTCAATTTGTTTGACTTACTTTTATTTTTAGTTTGTTTCAAAAAGAACGTTCCCTTTTTTTTAATGATAACTCTTTAATTCCAACTTTTCATGTGACATGTTCAAGGCCACGTGATTAAAAGACATTTTGATACATTCTACGTGTTTTTAGTTTGAGGTCACAAGATTCAAAAGTCTTGTTGCTTTCTTAAACTCCGTGCCAAGTCAAAATCAAACAAATAAATCGAAAGGGAGGGAATACTTGTTTCCATTCTCTACAAAATACTGTACTTTTCTAATAAAGAAGTGTTGCGAGGCAATATGGGAACAAAAAGTATAAAAAATGTTTCTTCATCGATCTTAAGGGTTTATTCTTAAGTTGCTAGAATGGATTGACAACTTCTTTATCTACTTTTGTACTCGCAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGTGTTTACTTGTTCTGAGATTTCCTTTTGTGAGTTGACATGACTAGCATCAATGAAGATTTTGTGTACTAACTAGATTGAAGTCCTTCAAAATTCTTGATCTTCTATCATTTCTTGTAACTGTTTTATGTATTGCCCATTCTTGACACCCCCATCTCAGATAATTGATGGAGTAATTCATTAGGATACTTTAATTTTTTTTTGAAATAGAAGGATACTTTGAATTTATTTTTGCCAAATTTGAATTTCATGCAAAACTTATCCATTCAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGTTAAAGTCTCTTCTGGTCTGTGCCACTTCCTTTGACTTACATTTAAAGATTCATCTTCTATCTGTGCTTAATTTATAGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGGTATGTTTCACATGAGAACTATATATCTATATCTCAAAAAAAAAAAAAATCATAACCGCACTGTCCGGGCAAAATAAGCATTTGTGGCCTGTGTGGCCCAAAAAAGCTGGCTCCGATCATCATGTTCTGATTCCTCATTATCAAGATCACTTGTTATGTCATCAGAAGTTGATGATTCAATCACCCACTAATTCTTATCTTCAGGGTCATCATTATCTTCATCAGTTGAAGCTTTGGATTCTGACACAGAATAAGAATATGAGGTGCATTCAGTATACTTTTCCTACGTGTCACCTCATCTGCTGCATTCAATATAGGACTCCTTAACCCAACATTCGAGCAAACCTTCTCCTCAATGATAACAACATCAGGATCACACTCCTCCTATGTGAAACACAACATCATGGATTGATGGGTCTACCTCTAATGTAAAGAAATGGACCTTGGCCTAGCTCAAACCCAAAAGCTAGCTCATCAAGGAAGGATTGACTAAGACCATATAAAAGACCACAACCCTTTCAGTCGACCAATTTGGGACTTTTTTAATTGATAATGCCAATATGGGACTTAACAAATTTCACTTTGCTTTTGCCACTGAGCAGTATGCTATTGTTTCGTTACTCATTTTGCTTCCAATTGATACTGATGTCATGTCTCTTTCTGCTTTAAATTAATACCATGTCCACTCCGTAATCTATTCTACATCTTAGACTGAGTTATGATTATAGTAACTACTTCCTGTTCACTTATCTTCGTGGGTTTCTTTCTCAAGAAAGGAAAGAAGAATGTAAATAATTTAGGGAGTGTTTTATTGTTTCAGATCATAATTTCTCTTCCAAATATGCTTGGCTTGGATCTTTTTCTACTTTTAGAAGCCCATATATTGGTATTAGCTAAATCAGACATTGCTTCACCTTTCCTTGGATGAGACCTGCTTCGCTAATGGCTGAAAGGCGACTCATCCTGCATGAGATAAAGCTGATTTTGTATAAAGGACGACTCATCCTGCATGAGATAATGCTGATTGTTGGAGGATTGACCTAAGGTTGACTAGCCTGTAGGAAGGAAAATGCGATGAGAATTATTGCCACAACAGACAAACTGGTTAGATGTGTAAACGACGAAGGAAATCCCACTTCTATTAGAAGCTTAAAAGATTATAGAAAAGAGCTTTCAAGGAGGGTAGATTTGACTCCGAGGCAACTTTTCTAAACTGCACTATAGGATCTGTATATGAGCTTTATAACTTGCCTAATAGTGTGTATAATAAATGAGGCTAGAAAAATTACAGAAGAGAACTTTCAAGGAATATTTGAGCCTATGCCGATGTTTCTTTCTCCATATATGCTCTGTGGGATCTCTGTATGAACTTTAGCAGTTGAGCTATAGAGTGGATATAAACACCATATTGCTTGATCTATCAATTTCTTGAACTCATCCGATACATTCAGGAAATACTAAATATAAAATGTACCATAAAAAGAAAAAGGAAAACAATACAGTGTCCTTTCTGTTGTTGGGGAAAAATCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGCATTCCCTTGTGGAGTGGAAGAGACTATTTATAATGCACTCAGCGCATGGATTGCCGCTTCTGTAAAGCATGGAGTGTGGAGACTGGAGAGTATTATAATTTATATAGTGCATATTTGTGGTTTTCTTTATTAACAATTGTCTTCTGGTATAACTTTGATAGTTTTTGATCTTCTGGTGATAAAAGAACTTGATTTATGTGGTAATTATCACTTAATGCCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGTAAGTTCTCTCTCTCTCTCTCTCTCACTCTCTGTGTGTCTGTTAGTTATCGTGCATGTCTTTGGTGCTGGTGGAACCTTCACATGATAGTTTGGTGATAATTACTAGGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAGGTACAGAATCTTCATACTATGGAAGTTGTTAAAATTTACTTTTAGTTGCTGCTATAACTTTTAGCATTGATAAGTAGCTTAGCTTTAGTTTGTTGAGATATTTTATATTTTTGAATTTTGAACTATGCAAATTTTTTGTTGTAAGTTGGCTATTTAAAGCTTCCCTATGCTTAAGAAAAATATTGAGAGACATTTTCAATCAATATTTTCTAACCCTTTTTGCTGCATCATCTTTTTAAAAAACAAACAGAAGTGATTTTCTTATTATCTTGTTGCTGTATGATAGCAAACTCCTAAGTCGAAACAGATTAATCAAGATAGGTGTTATCATCTATATAGTATGGTTTGGGGAACCTGTTCAATGAAAATATGAACCAGGTATTATGAAAAATTTCATTCAGATTTTATCCAAAGAAGTACAAGTAGTTAAAACTATTAAAATAATTGCAAAATTACCCAATAACATGAGTTAAGTGAAAAGGAATCGTCCAAATCTAGTTCAGTATTGCATAAAATGTATGAAGAATCAATTTTAAGACAGTTCACTACCTCCGATGACGAAGCCCTGACGACTTAAGCATCCATTTTCTGTTACCAGGTGCAACTTTGAACTGTTCTATTTCTTCTCCTTTACAATCTTGCCCGACCTATTTGCTTCTGCTTGGAGCTCTCGATAACAGAACCTCCTTGAATGCCTTGGTCTTTTTATGCCCTTTCCTATCCCTCTTTTTGTTACTTAGGTAATCACCCCCTTTCTGTTTTGACAAAATCGTATCACTCATGACAAAGATGCGTATCTGCTGGAATCTGAATTCGCAAGATTATCTCCCCAAATTAAGCCTAAGATGTCTTTAGATCGAAGCTGCATTCTAGCATCTCTCTATGATTAATACGGTTTGCGTTGGTGTCTAGATGATATTGGATTATCAAGGTTTAACATTGTTGAAGCATATGAAATGCTAATGCTTCCAGCTTGAACTAGATAGGAAAGATAACGGAAAGATCTGGCTTCAGAGTACCAAAAGTTTTTAGGTGGTCAAGTGTGCTTCATTGAGTTTAGATCTACGATGTGGCTGGTCCAGGGGGTGTTAGTTACTTGACTGGTGATTTAAGGGGATTAAACAATTAATGCTAAGGATCTTAGTTGATTCATTGACACTTTGTTTACGGCATGGTTGGTTAGAATAGTAAGGAAGTTGGCCAATTCAGATGCGAGTCATTCTTTGTTCAAAATTACAGATGTAGACAACTTCTCTGAATTTAAATATGGGTATCGTCCTATGTCAAAAAAACTTGAAGGCCTCTAACATGTTAATATCTTTGATAAACCTCATGTTCTATTTTGTTTCTGGTGAAAAACTACAGGTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGTACACTCGCAATATTTGCAATATTCATTTGGATATGTCTTTAGAAATTGACAAACAATTCCATTTCCTTTTCAAGTTGAGTTATCTGTTTAATTTATTTCACAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAGTAAGTCCCAGTCTCTATAAAAAAAAAATCCATTTTTTTTCAAGTTAGGTTATTCTGTATGAAATACGTCTTATTTGAATTGTTATGCAGAGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAGGTTCGTATGCCTGACTTTGACTATTACTTAATTTGGCTTGTCCCTTCCTTTCGTCGTACTAGGATCTTTACTCTTAGAAACCACTTAGGTGGCATGACATCTAGACTAGCTCGATCTGTTCTTGTTCTTTACTGGTGTTTTTGTAAAATAACCAAGAGAAAATCTGCTTGCCATTTGCTCTACAAAATACATTCCTTTTTTGGTTCCTTTTTCTCCTTAAATATTTGAAAACCACTTGAAAAGTAAACGGACATTTGATGTCTTTGTGCAACAGCTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCATAGGCACAACAATATTTTTGAAGAGTCTATACGGAGAGACAAGTACATCTAAAAAAAATGTGAAATTGTGACGTTTTCATTATTTTATAGGCTTTTCTTGTGTTTGTAAACTCAAGTTGTACTCACATAAGATTGTTAACAATGTAATTTGTATAATACAAACATTTACGATTTCATA</genome_strand>
        <mrna_strand>CTAAACTAACCAACCAAAATTCCAGTAGAGAAGGAACGAAAATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG.............................................................................................................................................................................................................................................................................GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATG...................................................................................GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA............................................................................................................GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG.........................................................................................................GGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCA..........................................................................................AGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAG..................................................................................................................................................................................................................................................................................CTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCATAGGCACAACAATATTTTTGAAGAGTCTATACGGAGAGACAAGTACATCTAAAAAAAATGTGAAATTGTGACGTTTTCATTATTTTATAGGCTTTTCTTGTGTTTGTAAACTCAAGTTGTACTCACATAAGATTGTTAACAATGTAATTTGTATAATACAAACATTTACGATTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405591" ref_strand="+" ref_description="SGN-E405591 [PPI-1-C21]">
      <seq>ctttatggatgagcatgaccaaatcaggacaaaaaccaatagatctggtggtatccagggaggcatatcaaatggagaaattattaatatgagaatagcattcaagccaacttctacaattgcaaggaagcaacatactgttagtagggataaacatgagactgaactcattgctcgtggtcgccatgatccttgtgtggttccacgagctgttccgatggtggaagcaatggtcgctttggtgctcgtggatcaattgatgactcaatatgcacaatgtatgctgttcccagtcaatcctgcactacaggaacctttgcagtcatcgacaactgggtctgctcaggttcccctttaaaaggagctgagcagtttgcgtacccccataacagcttctcacatttctggcattctactacgtttggagagtgtaattttttgttaaaagaagttatcctcaacacctttagagttatattgttgaatagagatatgtatatagcttttgttgttggagctatcaccagcatgttgcttggactcttcaattatgtcattggctatgtgttggatccttcaaaagtagtgcatttttggaggatccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="63421" stop="61720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63121" g_stop="63064" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62958" g_stop="62893" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="124" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62802" g_stop="62718" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="209" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62717" i_stop="62444" i_length="274">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62443" g_stop="62020" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="608" r_length="399" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E405591" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.041" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63121" e_stop="63064"/>
          <exon e_start="62958" e_stop="62893"/>
          <exon e_start="62802" e_stop="62718"/>
          <exon e_start="62443" e_stop="62020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGTACACTCGCAATATTTGCAATATTCATTTGGATATGTCTTTAGAAATTGACAAACAATTCCATTTCCTTTTCAAGTTGAGTTATCTGTTTAATTTATTTCACAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAGTAAGTCCCAGTCTCTATAAAAAAAAAATCCATTTTTTTTCAAGTTAGGTTATTCTGTATGAAATACGTCTTATTTGAATTGTTATGCAGAGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAGGTTCGTATGCCTGACTTTGACTATTACTTAATTTGGCTTGTCCCTTCCTTTCGTCGTACTAGGATCTTTACTCTTAGAAACCACTTAGGTGGCATGACATCTAGACTAGCTCGATCTGTTCTTGTTCTTTACTGGTGTTTTTGTAAAATAACCAAGAGAAAATCTGCTTGCCATTTGCTCTACAAAATACATTCCTTTTTTGGTTCCTTTTTCTCCTTAAATATTTGAAAACCACTTGAAAAGTAAACGGACATTTGATGTCTTTGTGCAACAGCTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCA</genome_strand>
        <mrna_strand>CTTTATGGATGAGCATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG.........................................................................................................GGAGGCATATCAAATGGAGAAATTATTAATATGAGAATAGCATTCAAGCCAACTTCTACAATTGCA..........................................................................................AGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAG..................................................................................................................................................................................................................................................................................CTGTTCCGATGGTGGAAGCAATGGTCGCTTTGGTGCTCGTGGATCAATTGATGACTCAATATGCACAATGTATGCTGTTCCCAGTCAATCCTGCACTACAGGAACCTTTGCAGTCATCGACAACTGGGTCTGCTCAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTA-----------CCCC----C-A----T-A--ACA--GCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGTAATTTTTTGTTAAAAGAAGTTATCCTCAACACCTTTAGAGTTATATTGTTGAATAGAGATATGTATATAGCTTTTGTTGTTGGAGCTATCACCAGCATGTTGCTTGGACTCTTCAATTATGTCATTGGCTATGTGTTGGATCCTTCAAAAGTAGTGCATTTTTGGAGGATCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405580" ref_strand="+" ref_description="SGN-E405580 [PPI-1-A21]">
      <seq>ctttatggatgagcatgaccaaatctggacaaaaaccaatagaatctggtggtatccagggaggcatatcaaatggagaaattattaatatgagaatagcattcaagccaacttctacaattgcaaggaagcaacatactgttagtagggataaacatgagactgagctgattgctcgtggtcgccatgatccttgtgtggttccacgagctgttccgatggtggaagcaatggtcgctttggtgctcgtggatcaattgatgactcaatatgcacaatgtatgctgttcccagtcaatcctgcactacaggaacctttgcagtcatcgacaactgggtctgctcaggttcccctttaaaaggagctgagcagtttgcgtacccccataacagcttctcacatttctggcattctactacgtttggagagtgtaattttttgttaaaagaagttatcctcaacacctttagagttatattgttgaatagagatatgtatatagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="63421" stop="61821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63121" g_stop="63064" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62958" g_stop="62893" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="125" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62802" g_stop="62718" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="210" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62717" i_stop="62444" i_length="274">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62443" g_stop="62121" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="508" r_length="298" r_score="0.858"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E405580" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.047" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63121" e_stop="63064"/>
          <exon e_start="62958" e_stop="62893"/>
          <exon e_start="62802" e_stop="62718"/>
          <exon e_start="62443" e_stop="62121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAG-ATCTGGTGGTATCCAGGTACACTCGCAATATTTGCAATATTCATTTGGATATGTCTTTAGAAATTGACAAACAATTCCATTTCCTTTTCAAGTTGAGTTATCTGTTTAATTTATTTCACAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAGTAAGTCCCAGTCTCTATAAAAAAAAAATCCATTTTTTTTCAAGTTAGGTTATTCTGTATGAAATACGTCTTATTTGAATTGTTATGCAGAGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAGGTTCGTATGCCTGACTTTGACTATTACTTAATTTGGCTTGTCCCTTCCTTTCGTCGTACTAGGATCTTTACTCTTAGAAACCACTTAGGTGGCATGACATCTAGACTAGCTCGATCTGTTCTTGTTCTTTACTGGTGTTTTTGTAAAATAACCAAGAGAAAATCTGCTTGCCATTTGCTCTACAAAATACATTCCTTTTTTGGTTCCTTTTTCTCCTTAAATATTTGAAAACCACTTGAAAAGTAAACGGACATTTGATGTCTTTGTGCAACAGCTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTT</genome_strand>
        <mrna_strand>CTTTATGGATGAGCATGACCAAATCTGGACAAAAACCAATAGAATCTGGTGGTATCCAG.........................................................................................................GGAGGCATATCAAATGGAGAAATTATTAATATGAGAATAGCATTCAAGCCAACTTCTACAATTGCA..........................................................................................AGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAGCTGATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAG..................................................................................................................................................................................................................................................................................CTGTTCCGATGGTGGAAGCAATGGTCGCTTTGGTGCTCGTGGATCAATTGATGACTCAATATGCACAATGTATGCTGTTCCCAGTCAATCCTGCACTACAGGAACCTTTGCAGTCATCGACAACTGGGTCTGCTCAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTA-----------CCCC----C-A----T-A--ACA--GCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGTAATTTTTTGTTAAAAGAAGTTATCCTCAACACCTTTAGAGTTATATTGTTGAATAGAGATATGTATATAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687808" ref_strand="+" ref_description="SGN-E687808 [T3_tus_81_C08]">
      <seq>cgttccaatcaaagttgaagtacccaacactgaccaaagagcaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggaggtagatcctcagcaagagaaaccatcgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttccagaggatttagttgataaccagattgtgacactagagcagattgaaagcaatattgttcgttgcccgaaccctgaatatgcagaaaagatgattggtgccattgattatgtacgagtgaggggggattctgttggtggtgtcgtaacttgcattgttagaaatgttccacgaggtcttggtacaccagtctttgataaacttgaagctgagctggctaaagcttgcatgtcattaccagcaacaaagggttttgagtttggaagtggctttgcaggtactttcatgactggcagtgagcataatgatgagttctttatggatgaacatgaccaaatcaggacaaaaaccaatagatctggtggtatccagggaggcatatcagatggagaaattattaatatgagagtagcattcaagccaacttctacaattgcaaggaagcaacatactgttagtagggataaccatgaaactgaactcattgctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="68788" stop="62448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68491" g_stop="68446" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="0.89"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="130" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="223" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66765" g_stop="66685" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="304" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64866" g_stop="64735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="436" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64626" g_stop="64524" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="539" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63158" g_stop="63064" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="634" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62958" g_stop="62893" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="700" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62802" g_stop="62748" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="755" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E687808" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68491" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66685"/>
          <exon e_start="64866" e_stop="64735"/>
          <exon e_start="64626" e_stop="64524"/>
          <exon e_start="63158" e_stop="63064"/>
          <exon e_start="62958" e_stop="62893"/>
          <exon e_start="62802" e_stop="62748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGGTATGTTTCACATGAGAACTATATATCTATATCTCAAAAAAAAAAAAAATCATAACCGCACTGTCCGGGCAAAATAAGCATTTGTGGCCTGTGTGGCCCAAAAAAGCTGGCTCCGATCATCATGTTCTGATTCCTCATTATCAAGATCACTTGTTATGTCATCAGAAGTTGATGATTCAATCACCCACTAATTCTTATCTTCAGGGTCATCATTATCTTCATCAGTTGAAGCTTTGGATTCTGACACAGAATAAGAATATGAGGTGCATTCAGTATACTTTTCCTACGTGTCACCTCATCTGCTGCATTCAATATAGGACTCCTTAACCCAACATTCGAGCAAACCTTCTCCTCAATGATAACAACATCAGGATCACACTCCTCCTATGTGAAACACAACATCATGGATTGATGGGTCTACCTCTAATGTAAAGAAATGGACCTTGGCCTAGCTCAAACCCAAAAGCTAGCTCATCAAGGAAGGATTGACTAAGACCATATAAAAGACCACAACCCTTTCAGTCGACCAATTTGGGACTTTTTTAATTGATAATGCCAATATGGGACTTAACAAATTTCACTTTGCTTTTGCCACTGAGCAGTATGCTATTGTTTCGTTACTCATTTTGCTTCCAATTGATACTGATGTCATGTCTCTTTCTGCTTTAAATTAATACCATGTCCACTCCGTAATCTATTCTACATCTTAGACTGAGTTATGATTATAGTAACTACTTCCTGTTCACTTATCTTCGTGGGTTTCTTTCTCAAGAAAGGAAAGAAGAATGTAAATAATTTAGGGAGTGTTTTATTGTTTCAGATCATAATTTCTCTTCCAAATATGCTTGGCTTGGATCTTTTTCTACTTTTAGAAGCCCATATATTGGTATTAGCTAAATCAGACATTGCTTCACCTTTCCTTGGATGAGACCTGCTTCGCTAATGGCTGAAAGGCGACTCATCCTGCATGAGATAAAGCTGATTTTGTATAAAGGACGACTCATCCTGCATGAGATAATGCTGATTGTTGGAGGATTGACCTAAGGTTGACTAGCCTGTAGGAAGGAAAATGCGATGAGAATTATTGCCACAACAGACAAACTGGTTAGATGTGTAAACGACGAAGGAAATCCCACTTCTATTAGAAGCTTAAAAGATTATAGAAAAGAGCTTTCAAGGAGGGTAGATTTGACTCCGAGGCAACTTTTCTAAACTGCACTATAGGATCTGTATATGAGCTTTATAACTTGCCTAATAGTGTGTATAATAAATGAGGCTAGAAAAATTACAGAAGAGAACTTTCAAGGAATATTTGAGCCTATGCCGATGTTTCTTTCTCCATATATGCTCTGTGGGATCTCTGTATGAACTTTAGCAGTTGAGCTATAGAGTGGATATAAACACCATATTGCTTGATCTATCAATTTCTTGAACTCATCCGATACATTCAGGAAATACTAAATATAAAATGTACCATAAAAAGAAAAAGGAAAACAATACAGTGTCCTTTCTGTTGTTGGGGAAAAATCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGCATTCCCTTGTGGAGTGGAAGAGACTATTTATAATGCACTCAGCGCATGGATTGCCGCTTCTGTAAAGCATGGAGTGTGGAGACTGGAGAGTATTATAATTTATATAGTGCATATTTGTGGTTTTCTTTATTAACAATTGTCTTCTGGTATAACTTTGATAGTTTTTGATCTTCTGGTGATAAAAGAACTTGATTTATGTGGTAATTATCACTTAATGCCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGTAAGTTCTCTCTCTCTCTCTCTCTCACTCTCTGTGTGTCTGTTAGTTATCGTGCATGTCTTTGGTGCTGGTGGAACCTTCACATGATAGTTTGGTGATAATTACTAGGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAGGTACAGAATCTTCATACTATGGAAGTTGTTAAAATTTACTTTTAGTTGCTGCTATAACTTTTAGCATTGATAAGTAGCTTAGCTTTAGTTTGTTGAGATATTTTATATTTTTGAATTTTGAACTATGCAAATTTTTTGTTGTAAGTTGGCTATTTAAAGCTTCCCTATGCTTAAGAAAAATATTGAGAGACATTTTCAATCAATATTTTCTAACCCTTTTTGCTGCATCATCTTTTTAAAAAACAAACAGAAGTGATTTTCTTATTATCTTGTTGCTGTATGATAGCAAACTCCTAAGTCGAAACAGATTAATCAAGATAGGTGTTATCATCTATATAGTATGGTTTGGGGAACCTGTTCAATGAAAATATGAACCAGGTATTATGAAAAATTTCATTCAGATTTTATCCAAAGAAGTACAAGTAGTTAAAACTATTAAAATAATTGCAAAATTACCCAATAACATGAGTTAAGTGAAAAGGAATCGTCCAAATCTAGTTCAGTATTGCATAAAATGTATGAAGAATCAATTTTAAGACAGTTCACTACCTCCGATGACGAAGCCCTGACGACTTAAGCATCCATTTTCTGTTACCAGGTGCAACTTTGAACTGTTCTATTTCTTCTCCTTTACAATCTTGCCCGACCTATTTGCTTCTGCTTGGAGCTCTCGATAACAGAACCTCCTTGAATGCCTTGGTCTTTTTATGCCCTTTCCTATCCCTCTTTTTGTTACTTAGGTAATCACCCCCTTTCTGTTTTGACAAAATCGTATCACTCATGACAAAGATGCGTATCTGCTGGAATCTGAATTCGCAAGATTATCTCCCCAAATTAAGCCTAAGATGTCTTTAGATCGAAGCTGCATTCTAGCATCTCTCTATGATTAATACGGTTTGCGTTGGTGTCTAGATGATATTGGATTATCAAGGTTTAACATTGTTGAAGCATATGAAATGCTAATGCTTCCAGCTTGAACTAGATAGGAAAGATAACGGAAAGATCTGGCTTCAGAGTACCAAAAGTTTTTAGGTGGTCAAGTGTGCTTCATTGAGTTTAGATCTACGATGTGGCTGGTCCAGGGGGTGTTAGTTACTTGACTGGTGATTTAAGGGGATTAAACAATTAATGCTAAGGATCTTAGTTGATTCATTGACACTTTGTTTACGGCATGGTTGGTTAGAATAGTAAGGAAGTTGGCCAATTCAGATGCGAGTCATTCTTTGTTCAAAATTACAGATGTAGACAACTTCTCTGAATTTAAATATGGGTATCGTCCTATGTCAAAAAAACTTGAAGGCCTCTAACATGTTAATATCTTTGATAAACCTCATGTTCTATTTTGTTTCTGGTGAAAAACTACAGGTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGTACACTCGCAATATTTGCAATATTCATTTGGATATGTCTTTAGAAATTGACAAACAATTCCATTTCCTTTTCAAGTTGAGTTATCTGTTTAATTTATTTCACAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAGTAAGTCCCAGTCTCTATAAAAAAAAAATCCATTTTTTTTCAAGTTAGGTTATTCTGTATGAAATACGTCTTATTTGAATTGTTATGCAGAGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTG</genome_strand>
        <mrna_strand>CGTTCCAATCAAAGTTGAAGTACCCAACACTGACCAAAGAGCAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA............................................................................................................GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG.........................................................................................................GGAGGCATATCAGATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCA..........................................................................................AGGAAGCAACATACTGTTAGTAGGGATAACCATGAAACTGAACTCATTGCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327005" ref_strand="+" ref_description="SGN-E327005 [cTOC-18-C10]">
      <seq>tccaatcaaagttgaagtacccaacactgaccagagaggaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggaggtagatcctcagcaagagaaaccatcgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttccagaggatttagttgataaccagattgtgacactagagcagattgaaagcaatattgttcgttgcccgaaccctgaatatgcagaaaagatgattggtgccattgattatgtacgagtgaggggggattctgttggtggtgtcgtaacttgcattgttagaaatgttccacgaggtcttggtacaccagtctttgataaacttgaagctgagctggctaaagcttgcatgtcattaccagcaacaaagggttttgagtttggaagtggctttgcaggtactttcatgactggcagtgagcataatgatgagttctttatggatgaacatgaccaaatcaggacaaaaaccaatagatctggtggtatccaggggagcatatcaaatggagaaattattaatatgagagtagcattccagccaacttctacaattgcaaggaaagcacatactgttagtaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="68788" stop="62477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68488" g_stop="68446" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="127" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="220" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66765" g_stop="66685" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="301" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64866" g_stop="64735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="433" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64626" g_stop="64524" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="536" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63158" g_stop="63064" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="631" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62958" g_stop="62893" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="697" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62802" g_stop="62777" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="723" r_length="26" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E327005" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68488" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66685"/>
          <exon e_start="64866" e_stop="64735"/>
          <exon e_start="64626" e_stop="64524"/>
          <exon e_start="63158" e_stop="63064"/>
          <exon e_start="62958" e_stop="62893"/>
          <exon e_start="62802" e_stop="62777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGGTATGTTTCACATGAGAACTATATATCTATATCTCAAAAAAAAAAAAAATCATAACCGCACTGTCCGGGCAAAATAAGCATTTGTGGCCTGTGTGGCCCAAAAAAGCTGGCTCCGATCATCATGTTCTGATTCCTCATTATCAAGATCACTTGTTATGTCATCAGAAGTTGATGATTCAATCACCCACTAATTCTTATCTTCAGGGTCATCATTATCTTCATCAGTTGAAGCTTTGGATTCTGACACAGAATAAGAATATGAGGTGCATTCAGTATACTTTTCCTACGTGTCACCTCATCTGCTGCATTCAATATAGGACTCCTTAACCCAACATTCGAGCAAACCTTCTCCTCAATGATAACAACATCAGGATCACACTCCTCCTATGTGAAACACAACATCATGGATTGATGGGTCTACCTCTAATGTAAAGAAATGGACCTTGGCCTAGCTCAAACCCAAAAGCTAGCTCATCAAGGAAGGATTGACTAAGACCATATAAAAGACCACAACCCTTTCAGTCGACCAATTTGGGACTTTTTTAATTGATAATGCCAATATGGGACTTAACAAATTTCACTTTGCTTTTGCCACTGAGCAGTATGCTATTGTTTCGTTACTCATTTTGCTTCCAATTGATACTGATGTCATGTCTCTTTCTGCTTTAAATTAATACCATGTCCACTCCGTAATCTATTCTACATCTTAGACTGAGTTATGATTATAGTAACTACTTCCTGTTCACTTATCTTCGTGGGTTTCTTTCTCAAGAAAGGAAAGAAGAATGTAAATAATTTAGGGAGTGTTTTATTGTTTCAGATCATAATTTCTCTTCCAAATATGCTTGGCTTGGATCTTTTTCTACTTTTAGAAGCCCATATATTGGTATTAGCTAAATCAGACATTGCTTCACCTTTCCTTGGATGAGACCTGCTTCGCTAATGGCTGAAAGGCGACTCATCCTGCATGAGATAAAGCTGATTTTGTATAAAGGACGACTCATCCTGCATGAGATAATGCTGATTGTTGGAGGATTGACCTAAGGTTGACTAGCCTGTAGGAAGGAAAATGCGATGAGAATTATTGCCACAACAGACAAACTGGTTAGATGTGTAAACGACGAAGGAAATCCCACTTCTATTAGAAGCTTAAAAGATTATAGAAAAGAGCTTTCAAGGAGGGTAGATTTGACTCCGAGGCAACTTTTCTAAACTGCACTATAGGATCTGTATATGAGCTTTATAACTTGCCTAATAGTGTGTATAATAAATGAGGCTAGAAAAATTACAGAAGAGAACTTTCAAGGAATATTTGAGCCTATGCCGATGTTTCTTTCTCCATATATGCTCTGTGGGATCTCTGTATGAACTTTAGCAGTTGAGCTATAGAGTGGATATAAACACCATATTGCTTGATCTATCAATTTCTTGAACTCATCCGATACATTCAGGAAATACTAAATATAAAATGTACCATAAAAAGAAAAAGGAAAACAATACAGTGTCCTTTCTGTTGTTGGGGAAAAATCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGCATTCCCTTGTGGAGTGGAAGAGACTATTTATAATGCACTCAGCGCATGGATTGCCGCTTCTGTAAAGCATGGAGTGTGGAGACTGGAGAGTATTATAATTTATATAGTGCATATTTGTGGTTTTCTTTATTAACAATTGTCTTCTGGTATAACTTTGATAGTTTTTGATCTTCTGGTGATAAAAGAACTTGATTTATGTGGTAATTATCACTTAATGCCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGTAAGTTCTCTCTCTCTCTCTCTCTCACTCTCTGTGTGTCTGTTAGTTATCGTGCATGTCTTTGGTGCTGGTGGAACCTTCACATGATAGTTTGGTGATAATTACTAGGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAGGTACAGAATCTTCATACTATGGAAGTTGTTAAAATTTACTTTTAGTTGCTGCTATAACTTTTAGCATTGATAAGTAGCTTAGCTTTAGTTTGTTGAGATATTTTATATTTTTGAATTTTGAACTATGCAAATTTTTTGTTGTAAGTTGGCTATTTAAAGCTTCCCTATGCTTAAGAAAAATATTGAGAGACATTTTCAATCAATATTTTCTAACCCTTTTTGCTGCATCATCTTTTTAAAAAACAAACAGAAGTGATTTTCTTATTATCTTGTTGCTGTATGATAGCAAACTCCTAAGTCGAAACAGATTAATCAAGATAGGTGTTATCATCTATATAGTATGGTTTGGGGAACCTGTTCAATGAAAATATGAACCAGGTATTATGAAAAATTTCATTCAGATTTTATCCAAAGAAGTACAAGTAGTTAAAACTATTAAAATAATTGCAAAATTACCCAATAACATGAGTTAAGTGAAAAGGAATCGTCCAAATCTAGTTCAGTATTGCATAAAATGTATGAAGAATCAATTTTAAGACAGTTCACTACCTCCGATGACGAAGCCCTGACGACTTAAGCATCCATTTTCTGTTACCAGGTGCAACTTTGAACTGTTCTATTTCTTCTCCTTTACAATCTTGCCCGACCTATTTGCTTCTGCTTGGAGCTCTCGATAACAGAACCTCCTTGAATGCCTTGGTCTTTTTATGCCCTTTCCTATCCCTCTTTTTGTTACTTAGGTAATCACCCCCTTTCTGTTTTGACAAAATCGTATCACTCATGACAAAGATGCGTATCTGCTGGAATCTGAATTCGCAAGATTATCTCCCCAAATTAAGCCTAAGATGTCTTTAGATCGAAGCTGCATTCTAGCATCTCTCTATGATTAATACGGTTTGCGTTGGTGTCTAGATGATATTGGATTATCAAGGTTTAACATTGTTGAAGCATATGAAATGCTAATGCTTCCAGCTTGAACTAGATAGGAAAGATAACGGAAAGATCTGGCTTCAGAGTACCAAAAGTTTTTAGGTGGTCAAGTGTGCTTCATTGAGTTTAGATCTACGATGTGGCTGGTCCAGGGGGTGTTAGTTACTTGACTGGTGATTTAAGGGGATTAAACAATTAATGCTAAGGATCTTAGTTGATTCATTGACACTTTGTTTACGGCATGGTTGGTTAGAATAGTAAGGAAGTTGGCCAATTCAGATGCGAGTCATTCTTTGTTCAAAATTACAGATGTAGACAACTTCTCTGAATTTAAATATGGGTATCGTCCTATGTCAAAAAAACTTGAAGGCCTCTAACATGTTAATATCTTTGATAAACCTCATGTTCTATTTTGTTTCTGGTGAAAAACTACAGGTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGTACACTCGCAATATTTGCAATATTCATTTGGATATGTCTTTAGAAATTGACAAACAATTCCATTTCCTTTTCAAGTTGAGTTATCTGTTTAATTTATTTCACAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAGTAAGTCCCAGTCTCTATAAAAAAAAAATCCATTTTTTTTCAAGTTAGGTTATTCTGTATGAAATACGTCTTATTTGAATTGTTATGCAGAGGAAGCAACATACTGTTAGTAGGGA</genome_strand>
        <mrna_strand>TCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA............................................................................................................GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG.........................................................................................................GGGAGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCCAGCCAACTTCTACAATTGCA..........................................................................................AGGAAAGCACATACTGTTAGTAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560659" ref_strand="+" ref_description="SGN-E560659 [20347]">
      <seq>gaggaaatgactatagtgaaatgtccctggcttatagagccatctcatgctgatgcaacttatgacttcaagtatggagtcagatcagtacaggggggcggtagatcttcagcaagagaaaccatcgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttccagaggatttggttgataaccagactgtgacactagagcagattgaaagcaatattgttcgttgcccgaaccctgaatatgcagaaaagatgattgctgccattgattatgtacgagtgaggggggattctgttggtggtgtcgtaacttgcattgttagaaatgttccacgaggtcttggtacaccagtctttgataaacttgaagctgagctggctaaagcttgcatgtcattaccagcaacaaagggttttgagtttggaagtggctttgcaggtactttcatgactggcagtgagcataatgatgagttctttatggatgaacatgaccaaatcaggacaaaanacaatagatctggtggtatccagggaggcatatcaaatggagaaattattaatatgagaatagcattcaagccaacttctacaatttgcaaggaagcaacatactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="68122" stop="62486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="93" r_length="85" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="186" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66765" g_stop="66685" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="267" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64866" g_stop="64735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="399" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64626" g_stop="64524" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="502" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63158" g_stop="63064" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="597" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62958" g_stop="62893" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="664" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62802" g_stop="62786" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="681" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E560659" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66685"/>
          <exon e_start="64866" e_stop="64735"/>
          <exon e_start="64626" e_stop="64524"/>
          <exon e_start="63158" e_stop="63064"/>
          <exon e_start="62958" e_stop="62893"/>
          <exon e_start="62802" e_stop="62786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATAGTGAAATGTCCCTTGCTTATAG-GCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGGTATGTTTCACATGAGAACTATATATCTATATCTCAAAAAAAAAAAAAATCATAACCGCACTGTCCGGGCAAAATAAGCATTTGTGGCCTGTGTGGCCCAAAAAAGCTGGCTCCGATCATCATGTTCTGATTCCTCATTATCAAGATCACTTGTTATGTCATCAGAAGTTGATGATTCAATCACCCACTAATTCTTATCTTCAGGGTCATCATTATCTTCATCAGTTGAAGCTTTGGATTCTGACACAGAATAAGAATATGAGGTGCATTCAGTATACTTTTCCTACGTGTCACCTCATCTGCTGCATTCAATATAGGACTCCTTAACCCAACATTCGAGCAAACCTTCTCCTCAATGATAACAACATCAGGATCACACTCCTCCTATGTGAAACACAACATCATGGATTGATGGGTCTACCTCTAATGTAAAGAAATGGACCTTGGCCTAGCTCAAACCCAAAAGCTAGCTCATCAAGGAAGGATTGACTAAGACCATATAAAAGACCACAACCCTTTCAGTCGACCAATTTGGGACTTTTTTAATTGATAATGCCAATATGGGACTTAACAAATTTCACTTTGCTTTTGCCACTGAGCAGTATGCTATTGTTTCGTTACTCATTTTGCTTCCAATTGATACTGATGTCATGTCTCTTTCTGCTTTAAATTAATACCATGTCCACTCCGTAATCTATTCTACATCTTAGACTGAGTTATGATTATAGTAACTACTTCCTGTTCACTTATCTTCGTGGGTTTCTTTCTCAAGAAAGGAAAGAAGAATGTAAATAATTTAGGGAGTGTTTTATTGTTTCAGATCATAATTTCTCTTCCAAATATGCTTGGCTTGGATCTTTTTCTACTTTTAGAAGCCCATATATTGGTATTAGCTAAATCAGACATTGCTTCACCTTTCCTTGGATGAGACCTGCTTCGCTAATGGCTGAAAGGCGACTCATCCTGCATGAGATAAAGCTGATTTTGTATAAAGGACGACTCATCCTGCATGAGATAATGCTGATTGTTGGAGGATTGACCTAAGGTTGACTAGCCTGTAGGAAGGAAAATGCGATGAGAATTATTGCCACAACAGACAAACTGGTTAGATGTGTAAACGACGAAGGAAATCCCACTTCTATTAGAAGCTTAAAAGATTATAGAAAAGAGCTTTCAAGGAGGGTAGATTTGACTCCGAGGCAACTTTTCTAAACTGCACTATAGGATCTGTATATGAGCTTTATAACTTGCCTAATAGTGTGTATAATAAATGAGGCTAGAAAAATTACAGAAGAGAACTTTCAAGGAATATTTGAGCCTATGCCGATGTTTCTTTCTCCATATATGCTCTGTGGGATCTCTGTATGAACTTTAGCAGTTGAGCTATAGAGTGGATATAAACACCATATTGCTTGATCTATCAATTTCTTGAACTCATCCGATACATTCAGGAAATACTAAATATAAAATGTACCATAAAAAGAAAAAGGAAAACAATACAGTGTCCTTTCTGTTGTTGGGGAAAAATCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGCATTCCCTTGTGGAGTGGAAGAGACTATTTATAATGCACTCAGCGCATGGATTGCCGCTTCTGTAAAGCATGGAGTGTGGAGACTGGAGAGTATTATAATTTATATAGTGCATATTTGTGGTTTTCTTTATTAACAATTGTCTTCTGGTATAACTTTGATAGTTTTTGATCTTCTGGTGATAAAAGAACTTGATTTATGTGGTAATTATCACTTAATGCCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGTAAGTTCTCTCTCTCTCTCTCTCTCACTCTCTGTGTGTCTGTTAGTTATCGTGCATGTCTTTGGTGCTGGTGGAACCTTCACATGATAGTTTGGTGATAATTACTAGGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAGGTACAGAATCTTCATACTATGGAAGTTGTTAAAATTTACTTTTAGTTGCTGCTATAACTTTTAGCATTGATAAGTAGCTTAGCTTTAGTTTGTTGAGATATTTTATATTTTTGAATTTTGAACTATGCAAATTTTTTGTTGTAAGTTGGCTATTTAAAGCTTCCCTATGCTTAAGAAAAATATTGAGAGACATTTTCAATCAATATTTTCTAACCCTTTTTGCTGCATCATCTTTTTAAAAAACAAACAGAAGTGATTTTCTTATTATCTTGTTGCTGTATGATAGCAAACTCCTAAGTCGAAACAGATTAATCAAGATAGGTGTTATCATCTATATAGTATGGTTTGGGGAACCTGTTCAATGAAAATATGAACCAGGTATTATGAAAAATTTCATTCAGATTTTATCCAAAGAAGTACAAGTAGTTAAAACTATTAAAATAATTGCAAAATTACCCAATAACATGAGTTAAGTGAAAAGGAATCGTCCAAATCTAGTTCAGTATTGCATAAAATGTATGAAGAATCAATTTTAAGACAGTTCACTACCTCCGATGACGAAGCCCTGACGACTTAAGCATCCATTTTCTGTTACCAGGTGCAACTTTGAACTGTTCTATTTCTTCTCCTTTACAATCTTGCCCGACCTATTTGCTTCTGCTTGGAGCTCTCGATAACAGAACCTCCTTGAATGCCTTGGTCTTTTTATGCCCTTTCCTATCCCTCTTTTTGTTACTTAGGTAATCACCCCCTTTCTGTTTTGACAAAATCGTATCACTCATGACAAAGATGCGTATCTGCTGGAATCTGAATTCGCAAGATTATCTCCCCAAATTAAGCCTAAGATGTCTTTAGATCGAAGCTGCATTCTAGCATCTCTCTATGATTAATACGGTTTGCGTTGGTGTCTAGATGATATTGGATTATCAAGGTTTAACATTGTTGAAGCATATGAAATGCTAATGCTTCCAGCTTGAACTAGATAGGAAAGATAACGGAAAGATCTGGCTTCAGAGTACCAAAAGTTTTTAGGTGGTCAAGTGTGCTTCATTGAGTTTAGATCTACGATGTGGCTGGTCCAGGGGGTGTTAGTTACTTGACTGGTGATTTAAGGGGATTAAACAATTAATGCTAAGGATCTTAGTTGATTCATTGACACTTTGTTTACGGCATGGTTGGTTAGAATAGTAAGGAAGTTGGCCAATTCAGATGCGAGTCATTCTTTGTTCAAAATTACAGATGTAGACAACTTCTCTGAATTTAAATATGGGTATCGTCCTATGTCAAAAAAACTTGAAGGCCTCTAACATGTTAATATCTTTGATAAACCTCATGTTCTATTTTGTTTCTGGTGAAAAACTACAGGTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGTACACTCGCAATATTTGCAATATTCATTTGGATATGTCTTTAGAAATTGACAAACAATTCCATTTCCTTTTCAAGTTGAGTTATCTGTTTAATTTATTTCACAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAA-TTGCAGTAAGTCCCAGTCTCTATAAAAAAAAAATCCATTTTTTTTCAAGTTAGGTTATTCTGTATGAAATACGTCTTATTTGAATTGTTATGCAGAGGAAGCAACATACTGT</genome_strand>
        <mrna_strand>GACTATAGTGAAATGTCCCTGGCTTATAGAGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTCAGATCAGTACAG..........................................................................................................................GGGGGCGGTAGATCTTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTGGTTGATAACCAGACTGTGACACTAGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGCTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA............................................................................................................GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAANACAATAGATCTGGTGGTATCCAG.........................................................................................................GGAGGCATATCAAATGGAGAAATTATTAATATGAGAATAGCATTCAAGCCAACTTCTACAATTTGCA..........................................................................................AGGAAGCAACATACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456008" ref_strand="+" ref_description="SGN-E456008 [cSTS-28-C6]">
      <seq>cacagcccaaacgactagagatacaggctgctggtaatacatttggaaattatttccgcgttacaacttttggagaatctcatggtggtggtgttggttgtataattgatggatgtccccctcgactcccactctcagagtcggatatgcaagtggaacttgacaggaggaggccaggtcaaagccgaattaccacaccaagaaaagagactgatacttgcaaaatatcatcaggcactgccgatggtttgactacgggatctccaatcaaagttgaagtacccaacactgaccagagaggaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggcggtagatcttcagcaagagaaaccatcgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttccagaggatttggttgataaccagactgtgacactagagcagattgaaagcaatattgttcgttgcccgaaccctgaatatgcagaaaagatgattgctgccattgattatgtacgagtgaggggggattctgttggtggtgtcgtaacttgcattgttagaaatgttccacgaggtcttggtacaccagtctttgataaacttgaagctgagctggctaaagcttgcatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="70363" stop="64266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70063" g_stop="70046" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69084" g_stop="68934" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="169" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68664" g_stop="68588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="246" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68504" g_stop="68446" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="305" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="389" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="482" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66765" g_stop="66685" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="563" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64866" g_stop="64735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="695" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64626" g_stop="64566" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="756" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E456008" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70063" e_stop="70046"/>
          <exon e_start="69084" e_stop="68934"/>
          <exon e_start="68664" e_stop="68588"/>
          <exon e_start="68504" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66685"/>
          <exon e_start="64866" e_stop="64735"/>
          <exon e_start="64626" e_stop="64566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCCAAACGACTAGGTGAAACTTTCTGTCATCCATCTGCTTGTCGAAATGCCTGAATGAACTTGATTTGAGGTTTCCATCTTTTATTCTGCTTTTTGTGTGAATTAAGGAAACGGGTTTTAATCTTTATTAGAATATGATCATTAAAATAGGAAAAAAAAGTAGTCTTGGAAATTTTTTATTTTTGTTTAATAATGGGGTAGGGGAAGGGGAAATGGGTGGGGAACTGAAACCATGAGTCTGGTAATTGGAATGAGTATAATCTAAATCTCGATCCATTGGAGGGCAAGTTTGGTGCCAACAGCGGCGGTAATTCCAGCTCTAATAGCATATATTTAAGTTGTAGTTAAAAAGGTCGTAGTTGAACTTACTAAGATTCCCAAGTCTATGAAGTTGATATCTCTTTTGTACTTTTTTTTTGTATATGTGATCATTCCACCATGTATGAATTCACCATCTTTTTTTTTCCTTTGTCGAAAATTTAACTTCAACTGTGGTGGGCTATGATTTTCAGTTCATCTTCATTATATGTTATCTGGATCTGTCAATGTTTTAAAATATTATCTCATGTTTCAATTTGTTTGACTTACTTTTATTTTTAGTTTGTTTCAAAAAGAACGTTCCCTTTTTTTTAATGATAACTCTTTAATTCCAACTTTTCATGTGACATGTTCAAGGCCACGTGATTAAAAGACATTTTGATACATTCTACGTGTTTTTAGTTTGAGGTCACAAGATTCAAAAGTCTTGTTGCTTTCTTAAACTCCGTGCCAAGTCAAAATCAAACAAATAAATCGAAAGGGAGGGAATACTTGTTTCCATTCTCTACAAAATACTGTACTTTTCTAATAAAGAAGTGTTGCGAGGCAATATGGGAACAAAAAGTATAAAAAATGTTTCTTCATCGATCTTAAGGGTTTATTCTTAAGTTGCTAGAATGGATTGACAACTTCTTTATCTACTTTTGTACTCGCAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGTGTTTACTTGTTCTGAGATTTCCTTTTGTGAGTTGACATGACTAGCATCAATGAAGATTTTGTGTACTAACTAGATTGAAGTCCTTCAAAATTCTTGATCTTCTATCATTTCTTGTAACTGTTTTATGTATTGCCCATTCTTGACACCCCCATCTCAGATAATTGATGGAGTAATTCATTAGGATACTTTAATTTTTTTTTGAAATAGAAGGATACTTTGAATTTATTTTTGCCAAATTTGAATTTCATGCAAAACTTATCCATTCAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGTTAAAGTCTCTTCTGGTCTGTGCCACTTCCTTTGACTTACATTTAAAGATTCATCTTCTATCTGTGCTTAATTTATAGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGGTATGTTTCACATGAGAACTATATATCTATATCTCAAAAAAAAAAAAAATCATAACCGCACTGTCCGGGCAAAATAAGCATTTGTGGCCTGTGTGGCCCAAAAAAGCTGGCTCCGATCATCATGTTCTGATTCCTCATTATCAAGATCACTTGTTATGTCATCAGAAGTTGATGATTCAATCACCCACTAATTCTTATCTTCAGGGTCATCATTATCTTCATCAGTTGAAGCTTTGGATTCTGACACAGAATAAGAATATGAGGTGCATTCAGTATACTTTTCCTACGTGTCACCTCATCTGCTGCATTCAATATAGGACTCCTTAACCCAACATTCGAGCAAACCTTCTCCTCAATGATAACAACATCAGGATCACACTCCTCCTATGTGAAACACAACATCATGGATTGATGGGTCTACCTCTAATGTAAAGAAATGGACCTTGGCCTAGCTCAAACCCAAAAGCTAGCTCATCAAGGAAGGATTGACTAAGACCATATAAAAGACCACAACCCTTTCAGTCGACCAATTTGGGACTTTTTTAATTGATAATGCCAATATGGGACTTAACAAATTTCACTTTGCTTTTGCCACTGAGCAGTATGCTATTGTTTCGTTACTCATTTTGCTTCCAATTGATACTGATGTCATGTCTCTTTCTGCTTTAAATTAATACCATGTCCACTCCGTAATCTATTCTACATCTTAGACTGAGTTATGATTATAGTAACTACTTCCTGTTCACTTATCTTCGTGGGTTTCTTTCTCAAGAAAGGAAAGAAGAATGTAAATAATTTAGGGAGTGTTTTATTGTTTCAGATCATAATTTCTCTTCCAAATATGCTTGGCTTGGATCTTTTTCTACTTTTAGAAGCCCATATATTGGTATTAGCTAAATCAGACATTGCTTCACCTTTCCTTGGATGAGACCTGCTTCGCTAATGGCTGAAAGGCGACTCATCCTGCATGAGATAAAGCTGATTTTGTATAAAGGACGACTCATCCTGCATGAGATAATGCTGATTGTTGGAGGATTGACCTAAGGTTGACTAGCCTGTAGGAAGGAAAATGCGATGAGAATTATTGCCACAACAGACAAACTGGTTAGATGTGTAAACGACGAAGGAAATCCCACTTCTATTAGAAGCTTAAAAGATTATAGAAAAGAGCTTTCAAGGAGGGTAGATTTGACTCCGAGGCAACTTTTCTAAACTGCACTATAGGATCTGTATATGAGCTTTATAACTTGCCTAATAGTGTGTATAATAAATGAGGCTAGAAAAATTACAGAAGAGAACTTTCAAGGAATATTTGAGCCTATGCCGATGTTTCTTTCTCCATATATGCTCTGTGGGATCTCTGTATGAACTTTAGCAGTTGAGCTATAGAGTGGATATAAACACCATATTGCTTGATCTATCAATTTCTTGAACTCATCCGATACATTCAGGAAATACTAAATATAAAATGTACCATAAAAAGAAAAAGGAAAACAATACAGTGTCCTTTCTGTTGTTGGGGAAAAATCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGCATTCCCTTGTGGAGTGGAAGAGACTATTTATAATGCACTCAGCGCATGGATTGCCGCTTCTGTAAAGCATGGAGTGTGGAGACTGGAGAGTATTATAATTTATATAGTGCATATTTGTGGTTTTCTTTATTAACAATTGTCTTCTGGTATAACTTTGATAGTTTTTGATCTTCTGGTGATAAAAGAACTTGATTTATGTGGTAATTATCACTTAATGCCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGTAAGTTCTCTCTCTCTCTCTCTCTCACTCTCTGTGTGTCTGTTAGTTATCGTGCATGTCTTTGGTGCTGGTGGAACCTTCACATGATAGTTTGGTGATAATTACTAGGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCAT</genome_strand>
        <mrna_strand>CACAGCCCAAACGACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACAGGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACTTTTGGAGAATCTCATGGTGGTGGTGTTGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG.............................................................................................................................................................................................................................................................................GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCCGATG...................................................................................GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGCGGTAGATCTTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTGGTTGATAACCAGACTGTGACACTAGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGCTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA............................................................................................................GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585250" ref_strand="+" ref_description="SGN-E585250 [66970]">
      <seq>cctgtgtctatacctaaactcaccaaccaaaatttccagtagagaaggaaggaaaatggcttcatctctgcttaccaaacagtttctcggggctccgttttcaagcctcggatccgggcagcaaccatccaagctctgttcttcaaacctccgattcccaactcaccgatcacagcccaaacgactagagatacaggctgctggtaatacatttggaaattatttccgcgttacaacttttggagaatctcatggtggtggtgttggttgtataattgatggatgtccccctcgactcccactctcagagtcggatatgcaagtggaacttgacaggaggaggccaggtcaaagccgaattaccacaccaagaaaagagactgatacttgcaaaatatcatcaggcactgccgatggtttgactacgggatctccaatcaaagttgaagtacccaacactgaccagagaggaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggcggtagatcttcagcaagagaaaccatcgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttccagaggatttggttgataaccagactgtgacactagagcagattgaaagcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="70531" stop="64554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70232" g_stop="70046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69084" g_stop="68934" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="339" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68664" g_stop="68588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="416" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68504" g_stop="68446" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="475" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="559" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="652" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66765" g_stop="66685" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="733" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64866" g_stop="64854" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="746" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E585250" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70232" e_stop="70046"/>
          <exon e_start="69084" e_stop="68934"/>
          <exon e_start="68664" e_stop="68588"/>
          <exon e_start="68504" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66685"/>
          <exon e_start="64866" e_stop="64854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGTCTATACCTAAACTAACCAACCAAAA-TTCCAGTAGAGAAGGAACGAAAATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAGGTGAAACTTTCTGTCATCCATCTGCTTGTCGAAATGCCTGAATGAACTTGATTTGAGGTTTCCATCTTTTATTCTGCTTTTTGTGTGAATTAAGGAAACGGGTTTTAATCTTTATTAGAATATGATCATTAAAATAGGAAAAAAAAGTAGTCTTGGAAATTTTTTATTTTTGTTTAATAATGGGGTAGGGGAAGGGGAAATGGGTGGGGAACTGAAACCATGAGTCTGGTAATTGGAATGAGTATAATCTAAATCTCGATCCATTGGAGGGCAAGTTTGGTGCCAACAGCGGCGGTAATTCCAGCTCTAATAGCATATATTTAAGTTGTAGTTAAAAAGGTCGTAGTTGAACTTACTAAGATTCCCAAGTCTATGAAGTTGATATCTCTTTTGTACTTTTTTTTTGTATATGTGATCATTCCACCATGTATGAATTCACCATCTTTTTTTTTCCTTTGTCGAAAATTTAACTTCAACTGTGGTGGGCTATGATTTTCAGTTCATCTTCATTATATGTTATCTGGATCTGTCAATGTTTTAAAATATTATCTCATGTTTCAATTTGTTTGACTTACTTTTATTTTTAGTTTGTTTCAAAAAGAACGTTCCCTTTTTTTTAATGATAACTCTTTAATTCCAACTTTTCATGTGACATGTTCAAGGCCACGTGATTAAAAGACATTTTGATACATTCTACGTGTTTTTAGTTTGAGGTCACAAGATTCAAAAGTCTTGTTGCTTTCTTAAACTCCGTGCCAAGTCAAAATCAAACAAATAAATCGAAAGGGAGGGAATACTTGTTTCCATTCTCTACAAAATACTGTACTTTTCTAATAAAGAAGTGTTGCGAGGCAATATGGGAACAAAAAGTATAAAAAATGTTTCTTCATCGATCTTAAGGGTTTATTCTTAAGTTGCTAGAATGGATTGACAACTTCTTTATCTACTTTTGTACTCGCAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGTGTTTACTTGTTCTGAGATTTCCTTTTGTGAGTTGACATGACTAGCATCAATGAAGATTTTGTGTACTAACTAGATTGAAGTCCTTCAAAATTCTTGATCTTCTATCATTTCTTGTAACTGTTTTATGTATTGCCCATTCTTGACACCCCCATCTCAGATAATTGATGGAGTAATTCATTAGGATACTTTAATTTTTTTTTGAAATAGAAGGATACTTTGAATTTATTTTTGCCAAATTTGAATTTCATGCAAAACTTATCCATTCAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGTTAAAGTCTCTTCTGGTCTGTGCCACTTCCTTTGACTTACATTTAAAGATTCATCTTCTATCTGTGCTTAATTTATAGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGGTATGTTTCACATGAGAACTATATATCTATATCTCAAAAAAAAAAAAAATCATAACCGCACTGTCCGGGCAAAATAAGCATTTGTGGCCTGTGTGGCCCAAAAAAGCTGGCTCCGATCATCATGTTCTGATTCCTCATTATCAAGATCACTTGTTATGTCATCAGAAGTTGATGATTCAATCACCCACTAATTCTTATCTTCAGGGTCATCATTATCTTCATCAGTTGAAGCTTTGGATTCTGACACAGAATAAGAATATGAGGTGCATTCAGTATACTTTTCCTACGTGTCACCTCATCTGCTGCATTCAATATAGGACTCCTTAACCCAACATTCGAGCAAACCTTCTCCTCAATGATAACAACATCAGGATCACACTCCTCCTATGTGAAACACAACATCATGGATTGATGGGTCTACCTCTAATGTAAAGAAATGGACCTTGGCCTAGCTCAAACCCAAAAGCTAGCTCATCAAGGAAGGATTGACTAAGACCATATAAAAGACCACAACCCTTTCAGTCGACCAATTTGGGACTTTTTTAATTGATAATGCCAATATGGGACTTAACAAATTTCACTTTGCTTTTGCCACTGAGCAGTATGCTATTGTTTCGTTACTCATTTTGCTTCCAATTGATACTGATGTCATGTCTCTTTCTGCTTTAAATTAATACCATGTCCACTCCGTAATCTATTCTACATCTTAGACTGAGTTATGATTATAGTAACTACTTCCTGTTCACTTATCTTCGTGGGTTTCTTTCTCAAGAAAGGAAAGAAGAATGTAAATAATTTAGGGAGTGTTTTATTGTTTCAGATCATAATTTCTCTTCCAAATATGCTTGGCTTGGATCTTTTTCTACTTTTAGAAGCCCATATATTGGTATTAGCTAAATCAGACATTGCTTCACCTTTCCTTGGATGAGACCTGCTTCGCTAATGGCTGAAAGGCGACTCATCCTGCATGAGATAAAGCTGATTTTGTATAAAGGACGACTCATCCTGCATGAGATAATGCTGATTGTTGGAGGATTGACCTAAGGTTGACTAGCCTGTAGGAAGGAAAATGCGATGAGAATTATTGCCACAACAGACAAACTGGTTAGATGTGTAAACGACGAAGGAAATCCCACTTCTATTAGAAGCTTAAAAGATTATAGAAAAGAGCTTTCAAGGAGGGTAGATTTGACTCCGAGGCAACTTTTCTAAACTGCACTATAGGATCTGTATATGAGCTTTATAACTTGCCTAATAGTGTGTATAATAAATGAGGCTAGAAAAATTACAGAAGAGAACTTTCAAGGAATATTTGAGCCTATGCCGATGTTTCTTTCTCCATATATGCTCTGTGGGATCTCTGTATGAACTTTAGCAGTTGAGCTATAGAGTGGATATAAACACCATATTGCTTGATCTATCAATTTCTTGAACTCATCCGATACATTCAGGAAATACTAAATATAAAATGTACCATAAAAAGAAAAAGGAAAACAATACAGTGTCCTTTCTGTTGTTGGGGAAAAATCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGCATTCCCTTGTGGAGTGGAAGAGACTATTTATAATGCACTCAGCGCATGGATTGCCGCTTCTGTAAAGCATGGAGTGTGGAGACTGGAGAGTATTATAATTTATATAGTGCATATTTGTGGTTTTCTTTATTAACAATTGTCTTCTGGTATAACTTTGATAGTTTTTGATCTTCTGGTGATAAAAGAACTTGATTTATGTGGTAATTATCACTTAATGCCAGATTGAAAGCAATA</genome_strand>
        <mrna_strand>CCTGTGTCTATACCTAAACTCACCAACCAAAATTTCCAGTAGAGAAGGAAGGAAAATGGCTTCATCTCTGCTTACCAAACAGTTTCTCGGGGCTCCGTTTTCAAGCCTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCAACTCACCGATCACAGCCCAAACGACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACAGGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACTTTTGGAGAATCTCATGGTGGTGGTGTTGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG.............................................................................................................................................................................................................................................................................GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCCGATG...................................................................................GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGCGGTAGATCTTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTGGTTGATAACCAGACTGTGACACTAGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAGCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479222" ref_strand="+" ref_description="SGN-E479222 [cSTD-9-K17]">
      <seq>ggaaaatggcttcatctctgcttaccaaacagtttctcggggctccgttttcaagcctcggatccgggcagcaaccatccaagctctgctcttcaaaccttcgattcccaactcaccgatcacagcccaaacgactagagatacaggctgctggtaatacatttggaaattatttccgcgttacaacttttggagaatctcacggtggtggtgttggttgtataattgatggatgtccccctcgactcccactctcagagtcggatatgcaagtggaacttgacaggaggaggccaggtcaaagccgaattaccacaccaagaaaagagactgatacttgcaaaatatcatcaggcactgccgatggtttgactacgggatctccaatcaaagttgaagtacccaacactgaccagagaggaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggcggtagatcttcagcaagagaaaccattgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="70482" stop="66426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70183" g_stop="70046" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69084" g_stop="68934" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="289" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68664" g_stop="68588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="366" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68504" g_stop="68446" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="425" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="509" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="602" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66765" g_stop="66726" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="642" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E479222" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70183" e_stop="70046"/>
          <exon e_start="69084" e_stop="68934"/>
          <exon e_start="68664" e_stop="68588"/>
          <exon e_start="68504" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAGGTGAAACTTTCTGTCATCCATCTGCTTGTCGAAATGCCTGAATGAACTTGATTTGAGGTTTCCATCTTTTATTCTGCTTTTTGTGTGAATTAAGGAAACGGGTTTTAATCTTTATTAGAATATGATCATTAAAATAGGAAAAAAAAGTAGTCTTGGAAATTTTTTATTTTTGTTTAATAATGGGGTAGGGGAAGGGGAAATGGGTGGGGAACTGAAACCATGAGTCTGGTAATTGGAATGAGTATAATCTAAATCTCGATCCATTGGAGGGCAAGTTTGGTGCCAACAGCGGCGGTAATTCCAGCTCTAATAGCATATATTTAAGTTGTAGTTAAAAAGGTCGTAGTTGAACTTACTAAGATTCCCAAGTCTATGAAGTTGATATCTCTTTTGTACTTTTTTTTTGTATATGTGATCATTCCACCATGTATGAATTCACCATCTTTTTTTTTCCTTTGTCGAAAATTTAACTTCAACTGTGGTGGGCTATGATTTTCAGTTCATCTTCATTATATGTTATCTGGATCTGTCAATGTTTTAAAATATTATCTCATGTTTCAATTTGTTTGACTTACTTTTATTTTTAGTTTGTTTCAAAAAGAACGTTCCCTTTTTTTTAATGATAACTCTTTAATTCCAACTTTTCATGTGACATGTTCAAGGCCACGTGATTAAAAGACATTTTGATACATTCTACGTGTTTTTAGTTTGAGGTCACAAGATTCAAAAGTCTTGTTGCTTTCTTAAACTCCGTGCCAAGTCAAAATCAAACAAATAAATCGAAAGGGAGGGAATACTTGTTTCCATTCTCTACAAAATACTGTACTTTTCTAATAAAGAAGTGTTGCGAGGCAATATGGGAACAAAAAGTATAAAAAATGTTTCTTCATCGATCTTAAGGGTTTATTCTTAAGTTGCTAGAATGGATTGACAACTTCTTTATCTACTTTTGTACTCGCAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGTGTTTACTTGTTCTGAGATTTCCTTTTGTGAGTTGACATGACTAGCATCAATGAAGATTTTGTGTACTAACTAGATTGAAGTCCTTCAAAATTCTTGATCTTCTATCATTTCTTGTAACTGTTTTATGTATTGCCCATTCTTGACACCCCCATCTCAGATAATTGATGGAGTAATTCATTAGGATACTTTAATTTTTTTTTGAAATAGAAGGATACTTTGAATTTATTTTTGCCAAATTTGAATTTCATGCAAAACTTATCCATTCAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGTTAAAGTCTCTTCTGGTCTGTGCCACTTCCTTTGACTTACATTTAAAGATTCATCTTCTATCTGTGCTTAATTTATAGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTC</genome_strand>
        <mrna_strand>GGAAAATGGCTTCATCTCTGCTTACCAAACAGTTTCTCGGGGCTCCGTTTTCAAGCCTCGGATCCGGGCAGCAACCATCCAAGCTCTGCTCTTCAAACCTTCGATTCCCAACTCACCGATCACAGCCCAAACGACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACAGGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACTTTTGGAGAATCTCACGGTGGTGGTGTTGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG.............................................................................................................................................................................................................................................................................GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCCGATG...................................................................................GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGCGGTAGATCTTCAGCAAGAGAAACCATTGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481551" ref_strand="+" ref_description="SGN-E481551 [cSTD-18-H21]">
      <seq>ctgcttaccaaacagtttctcggggctccgttttcaagcctaggatccgggcagcaaccatccaagctctgctcttcaaaccttcgattcccaactcaccgatcacagcccaaacgactagagatacaggctgctggtaatacatttggaaattatttccgcgttacaacttttggagaatctcacggtggtggtgttggttgtataattgatggatgtccccctcgactcccactctcagagtcggatatgcaagtggaacttgacaggaggaggccaggtcaaagccgaattaccacaccaagaaaagagactgatacttgcaaaatatcatcaggcactgccgatggtttgactacgggatctccaatcaaagttgaagtacccaacactgaccagagaggaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggcggtagatcttcagcaagagaaaccattgggagagtcgctgctggagctggtgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="70465" stop="66436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70166" g_stop="70046" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69084" g_stop="68934" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="272" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68664" g_stop="68588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="349" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68504" g_stop="68446" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="408" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="492" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="585" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.873" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66765" g_stop="66736" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="615" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E481551" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70166" e_stop="70046"/>
          <exon e_start="69084" e_stop="68934"/>
          <exon e_start="68664" e_stop="68588"/>
          <exon e_start="68504" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAGGTGAAACTTTCTGTCATCCATCTGCTTGTCGAAATGCCTGAATGAACTTGATTTGAGGTTTCCATCTTTTATTCTGCTTTTTGTGTGAATTAAGGAAACGGGTTTTAATCTTTATTAGAATATGATCATTAAAATAGGAAAAAAAAGTAGTCTTGGAAATTTTTTATTTTTGTTTAATAATGGGGTAGGGGAAGGGGAAATGGGTGGGGAACTGAAACCATGAGTCTGGTAATTGGAATGAGTATAATCTAAATCTCGATCCATTGGAGGGCAAGTTTGGTGCCAACAGCGGCGGTAATTCCAGCTCTAATAGCATATATTTAAGTTGTAGTTAAAAAGGTCGTAGTTGAACTTACTAAGATTCCCAAGTCTATGAAGTTGATATCTCTTTTGTACTTTTTTTTTGTATATGTGATCATTCCACCATGTATGAATTCACCATCTTTTTTTTTCCTTTGTCGAAAATTTAACTTCAACTGTGGTGGGCTATGATTTTCAGTTCATCTTCATTATATGTTATCTGGATCTGTCAATGTTTTAAAATATTATCTCATGTTTCAATTTGTTTGACTTACTTTTATTTTTAGTTTGTTTCAAAAAGAACGTTCCCTTTTTTTTAATGATAACTCTTTAATTCCAACTTTTCATGTGACATGTTCAAGGCCACGTGATTAAAAGACATTTTGATACATTCTACGTGTTTTTAGTTTGAGGTCACAAGATTCAAAAGTCTTGTTGCTTTCTTAAACTCCGTGCCAAGTCAAAATCAAACAAATAAATCGAAAGGGAGGGAATACTTGTTTCCATTCTCTACAAAATACTGTACTTTTCTAATAAAGAAGTGTTGCGAGGCAATATGGGAACAAAAAGTATAAAAAATGTTTCTTCATCGATCTTAAGGGTTTATTCTTAAGTTGCTAGAATGGATTGACAACTTCTTTATCTACTTTTGTACTCGCAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGTGTTTACTTGTTCTGAGATTTCCTTTTGTGAGTTGACATGACTAGCATCAATGAAGATTTTGTGTACTAACTAGATTGAAGTCCTTCAAAATTCTTGATCTTCTATCATTTCTTGTAACTGTTTTATGTATTGCCCATTCTTGACACCCCCATCTCAGATAATTGATGGAGTAATTCATTAGGATACTTTAATTTTTTTTTGAAATAGAAGGATACTTTGAATTTATTTTTGCCAAATTTGAATTTCATGCAAAACTTATCCATTCAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGTTAAAGTCTCTTCTGGTCTGTGCCACTTCCTTTGACTTACATTTAAAGATTCATCTTCTATCTGTGCTTAATTTATAGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAAT</genome_strand>
        <mrna_strand>CTGCTTACCAAACAGTTTCTCGGGGCTCCGTTTTCAAGCCTAGGATCCGGGCAGCAACCATCCAAGCTCTGCTCTTCAAACCTTCGATTCCCAACTCACCGATCACAGCCCAAACGACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACAGGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACTTTTGGAGAATCTCACGGTGGTGGTGTTGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG.............................................................................................................................................................................................................................................................................GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCCGATG...................................................................................GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGCGGTAGATCTTCAGCAAGAGAAACCATTGGGAGAGTCGCTGCTGGAGCTGGTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575772" ref_strand="+" ref_description="SGN-E575772 [35449]">
      <seq>atggcttcatctctgcttaccaaacagtttctcggggccccgnttttcaagcctcggatccgggcagcaaccattcaagctctgctcttcaaacctccgattcccaactcatcgatcacagcccaaacgactagagatacaggctgctggtaatacatttggaaattatttccgcgttacaacttttggagaatctcacggtggtggtgttggttgtataattgatggatgtccccctcgactcccactctcagagtcggatatgcaagtggaacttgacaggaggaggccaggtcaaagccgaattaccacaccaagaaaagagactgatacttgcaaaatatcatcaggcactgccgatggtttgactacgggatctccaatcaaagttgaagtacccaacactgaccagagaggaaatagcattgcatcctgataattgacaaatagctttgaagtgaaaaggagaaacattgcagcctaatctgagactaatgatcgaagatgttatgcttagactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacgttatgacttcaagtatggagtcagatcagtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="70478" stop="67438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70178" g_stop="70046" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69084" g_stop="68934" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="285" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68664" g_stop="68588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="362" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68504" g_stop="68446" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="421" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68445" i_stop="67999" i_length="447">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.487" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67998" g_stop="67904" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="516" r_length="95" r_score="0.905"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67903" i_stop="67821" i_length="83">
            <donor d_prob="0.615" d_score="0.84"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67820" g_stop="67738" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="600" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E575772" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70178" e_stop="70046"/>
          <exon e_start="69084" e_stop="68934"/>
          <exon e_start="68664" e_stop="68588"/>
          <exon e_start="68504" e_stop="68446"/>
          <exon e_start="67998" e_stop="67904"/>
          <exon e_start="67820" e_stop="67738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCC-ATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAGGTGAAACTTTCTGTCATCCATCTGCTTGTCGAAATGCCTGAATGAACTTGATTTGAGGTTTCCATCTTTTATTCTGCTTTTTGTGTGAATTAAGGAAACGGGTTTTAATCTTTATTAGAATATGATCATTAAAATAGGAAAAAAAAGTAGTCTTGGAAATTTTTTATTTTTGTTTAATAATGGGGTAGGGGAAGGGGAAATGGGTGGGGAACTGAAACCATGAGTCTGGTAATTGGAATGAGTATAATCTAAATCTCGATCCATTGGAGGGCAAGTTTGGTGCCAACAGCGGCGGTAATTCCAGCTCTAATAGCATATATTTAAGTTGTAGTTAAAAAGGTCGTAGTTGAACTTACTAAGATTCCCAAGTCTATGAAGTTGATATCTCTTTTGTACTTTTTTTTTGTATATGTGATCATTCCACCATGTATGAATTCACCATCTTTTTTTTTCCTTTGTCGAAAATTTAACTTCAACTGTGGTGGGCTATGATTTTCAGTTCATCTTCATTATATGTTATCTGGATCTGTCAATGTTTTAAAATATTATCTCATGTTTCAATTTGTTTGACTTACTTTTATTTTTAGTTTGTTTCAAAAAGAACGTTCCCTTTTTTTTAATGATAACTCTTTAATTCCAACTTTTCATGTGACATGTTCAAGGCCACGTGATTAAAAGACATTTTGATACATTCTACGTGTTTTTAGTTTGAGGTCACAAGATTCAAAAGTCTTGTTGCTTTCTTAAACTCCGTGCCAAGTCAAAATCAAACAAATAAATCGAAAGGGAGGGAATACTTGTTTCCATTCTCTACAAAATACTGTACTTTTCTAATAAAGAAGTGTTGCGAGGCAATATGGGAACAAAAAGTATAAAAAATGTTTCTTCATCGATCTTAAGGGTTTATTCTTAAGTTGCTAGAATGGATTGACAACTTCTTTATCTACTTTTGTACTCGCAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGTGTTTACTTGTTCTGAGATTTCCTTTTGTGAGTTGACATGACTAGCATCAATGAAGATTTTGTGTACTAACTAGATTGAAGTCCTTCAAAATTCTTGATCTTCTATCATTTCTTGTAACTGTTTTATGTATTGCCCATTCTTGACACCCCCATCTCAGATAATTGATGGAGTAATTCATTAGGATACTTTAATTTTTTTTTGAAATAGAAGGATACTTTGAATTTATTTTTGCCAAATTTGAATTTCATGCAAAACTTATCCATTCAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGTTAAAGTCTCTTCTGGTCTGTGCCACTTCCTTTGACTTACATTTAAAGATTCATCTTCTATCTGTGCTTAATTTATAGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAAC-TTATGACTTCAAGTATGGAGTTAGATCAGTACA</genome_strand>
        <mrna_strand>ATGGCTTCATCTCTGCTTACCAAACAGTTTCTCGGGGCCCCGNTTTTCAAGCCTCGGATCCGGGCAGCAACCATTCAAGCTCTGCTCTTCAAACCTCCGATTCCCAACTCATCGATCACAGCCCAAACGACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACAGGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACTTTTGGAGAATCTCACGGTGGTGGTGTTGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG.............................................................................................................................................................................................................................................................................GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCCGATG...................................................................................GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATTGCATCCTGATAATTGACAAATAGCTTTGAAGTGAAAAGGAGAAACATTGCAGCCTAATCTGAGACTAATGATCGAAGATGTTATGCTTA...................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACGTTATGACTTCAAGTATGGAGTCAGATCAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544341" ref_strand="+" ref_description="SGN-E544341 [TUS-66-J24]">
      <seq>ttgaggcgaaagagcgtttaagagtcagaattacggatgctgatcatgaaagatgggaagttcctcgagaatttatccctcgggaaactcatttacccccccgaagctccctcttggaaaagcgttcttctacctcatttccattatcagaagaaacgcactacttccatacagacaccgtttcggaccttgctttcactctctacaacaccaccccttttggctttactatcacgcgccactccacaggtgacgttctttttgacaccagacctgagaatgactctccagacacgttcttcatcttcaaggatcagtaccttcaattgtcctcttcattgccagccaataggtcatctatttatggtctcggggagcataccaaaagaaattttaagctcaagcataatcagacattgactctttggaatgctgatattgctagtgctaatgctgatctcaacttgtatggttcccaccctttttacatggatgtcaggtctcatcctggcggggggactagtcacggagtcttgctgttcaatagtaatggcatggacattgtgtacgctggtgacagaattacatacaaggtgattggaggggtggttgacttgtacttctttgctggtcctgtgccagagttggtcatggaacagtacacagagctcattggccgcccagcgcccatgccatactggtcttttggtgcgtaattataccagcgacttatctattatttcatagtgtttattctggttactaattcacatgaccttaaactttgaattttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="72554" stop="73951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72854" g_stop="73651" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E544341" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72854" e_stop="73651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAATTTCACATGACCTTAACTTTTGAATTTTGTTT</genome_strand>
        <mrna_strand>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAA-TTCACATGACCTTAAACTTTGAATTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544382" ref_strand="+" ref_description="SGN-E544382 [TUS-66-K24]">
      <seq>ttgaggcgaaagagcgtttaagagtcagaattacggatgctgatcatgaaagatgggaagttcctcgagaatttatccctcgggaaactcatttacccccccgaagctccctcttggaaaagcgttcttctacctcatttccattatcagaagaaacgcactacttccatacagacaccgtttcggaccttgctttcactctctacaacaccaccccttttggctttactatcacgcgccactccacaggtgacgttctttttgacaccagacctgagaatgactctccagacacgttcttcatcttcaaggatcagtaccttcaattgtcctcttcattgccagccaataggtcatctatttatggtctcggggagcataccaaaagaaattttaagctcaagcataatcagacattgactctttggaatgctgatattgctagtgctaatgctgatctcaacttgtatggttcccaccctttttacatggatgtcaggtctcatcctggcggggggactagtcacggagtcttgctgttcaatagtaatggcatggacattgtgtacgctggtgacagaattacatacaaggtgattggaggggtggttgacttgtacttctttgctggtcctgtgccagagttggtcatggaacagtacacagagctcattggccgcccagcgcccatgccatactggtcttttggtgcgtaattataccagcgacttatctattatttcatagtgtttattctggttactaatttcacatgaccttaacttttgaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="72554" stop="73948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72854" g_stop="73648" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E544382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72854" e_stop="73648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAATTTCACATGACCTTAACTTTTGAATTTTG</genome_strand>
        <mrna_strand>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAATTTCACATGACCTTAACTTTTGAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306249" ref_strand="+" ref_description="SGN-E306249 [cLEY-13-H16]">
      <seq>gagcgtctaagagtcagaattacggatgctgatcatgaaagatgggaagttcctcgagaatttatccctcgggaaactcatttacccccccgaagctccctcttggaaaagcgttcttctacctcatttccattatcagaagaaacgcactacttccatacagacaccgtttcggaccttgctttcactctctacaacaccaccccttttggctttactatcacgcgccactccacaggtgacgttctttttgacaccagacctgagaatgactctccagacacgttcttcatcttcaaggatcagtaccttcaattgtcctcttcattgccagccaataggtcatctatttatggtctcggggagcataccaaaagaaattttaagctcaagcataatcagacattgactctttggaatgctgatattgctagtgctaatgctgatctcaacttgtatggttcccaccctttttacatggatgtcaggtctcatcctggcggggggactagtcacggagtcttgctgttcaatagtaatggcatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="72565" stop="73714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72865" g_stop="73414" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E306249" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72865" e_stop="73414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACA</genome_strand>
        <mrna_strand>GAGCGTCTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317321" ref_strand="+" ref_description="SGN-E317321 [cTOA-28-P8]">
      <seq>gacattgtgtacgctggtgacagaattacatacaaggtgattggaggggtggttgacttgtacttctttgctggtcctgtgccagagttggtcatggaacagtacacagagctcattggccgcccagcgcccatgccatactggtcttttggatttcaccaatgccgttatggttataaagacattactgaaattaagaatgtggttgctggctatgcgaaagctcagatccctctcgaggtcatgtggacagatattgatcatatggatggttacaaggatttcacactcgatcctattaacttcccacttgaccagatgaagaaatttgtcgatacacttcatcagaatggccagaaatttgttctcatattggatccagggatcagcataaatagctcatacgaaacatacaagagagggatgcaagcagacgttttcatcaaacgcaatggtgtcccttatcttggcgaagtttggcctggaaaagtctactttcctgatttcataaatccccgagggagagtcttctggagtaatgaaatcaagattttccatgaccttctccccatcgatggtctctggcttgacatgaatgagttatctaacttcatttcttctcctccgagcccctcttctacccttgacaaacctccttataagaatcataactcaggaggcttacgtccaataaacgagaagactgtcccagcaacatcagtacattttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="73111" stop="75248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73561" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="74127" i_length="566">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74128" g_stop="74358" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="382" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74359" i_stop="74597" i_length="239">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74598" g_stop="74948" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="733" r_length="351" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E317321" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73561"/>
          <exon e_start="74128" e_stop="74358"/>
          <exon e_start="74598" e_stop="74948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAATTTCACATGACCTTAACTTTTGAATTTTGTTTGGTACTTCCCACTTAGTTTCCTCAAACTGTTCCATTCACATGCTTCTTCGTGATGTTAAAATATTATTCCCTCCGTTTCGATTTGTTTGTCTTATTTTCCTTTTTTGGCAACTTTTTAATTCTAACTTTCCCGATGACATGTTTAAGAACTCAAGATTAGAATACATTTTACATATCACAAGATTCAAAAATCTTCTTTATGTTCTTAAAAATTCTATACCTAGTCAAAACCAGACAAAGAAATTGAAATAGAGGGAGTAATTTTTCTACTTGTGTCAAGTACTCGTTAGTGTAGACCTCGGTTATATAACATTTCGTGATCCTATCCCTTTCAGTACTCATAATGGGATGTGTAGAGCTTTTACTAGTTGTGAATATGAGGATCGAGTTTTCTTTCTACAATATATACACTATGATTTGAGACAGATAGATGCACACATTGTTTTTATGCAAGCTATTGCAAATTGTTGCGACAGGATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGAATGTGGTTGCTGGCTATGCGAAAGCTCAGATCCCTCTCGAGGTCATGTGGACAGATATTGATCATATGGATGGTTACAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTCGATACACTTCATCAGAATGGCCAGAAATTTGTTCTCATATTGGATCCAGGTGAGTTATGAGTTATAACATATCTAATTTCTTGCTTTTGTTGATACTATACGTCTGTGGAATCAGTGTCAGGGTAGGCTGCCTACATCACACCCCTTATGGTGCAGCCTTTCCTAGACCCTCCATGAACGTGGGATGCTTTGTGCATCTGGCTGCACTTTATTTTGTTGAATTTATACTTGCGTTGAGAAATTGCGAAGGTATTGGTTCAAATGATTTCAATGATTTGTACTTCACAGGGATCAGCATAAATAGCTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGA</genome_strand>
        <mrna_strand>GACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGAATGTGGTTGCTGGCTATGCGAAAGCTCAGATCCCTCTCGAGGTCATGTGGACAGATATTGATCATATGGATGGTTACAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTCGATACACTTCATCAGAATGGCCAGAAATTTGTTCTCATATTGGATCCAG...............................................................................................................................................................................................................................................GGATCAGCATAAATAGCTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAAACCTCCTTATAAGAATCATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461984" ref_strand="+" ref_description="SGN-E461984 [cPRO-10-O23]">
      <seq>attccatactggtcttttggatttcaccaatgccgttatggttataaagacattactgaaattaagcatgtggttgctggatatgcgaaagctcagatccctcttgaggtcatgtggacagatattgatcatatggatggttataaggatttcacactcgatcctattaacttcccacttgaccagatgaagaaatttgttgatacacttcatcacaatggtcagaaatttgttctcatattggatccagggatcagcataaatagctcatatgagacatacaagagagggatgcaagcagacgttttcatcaaacgcgatggtgtcccttatctcggcgaagtttggcctggaaaagtctactttcctgatttcataaatccccgaggcagagtcttctggagtaatgaaatcaagattttccatgaccttctccccatcgatgggctctggcttgacatgaacgagttatctaacttcatttcttctcctccgagcccgtcttctacccttgacaaccctccttataagatcaataactccggaagcttacgtccaataaacgagaagactgtcccagcaacatcagtacatttcgggaacgccttagagtacaatgttcataacctctacggattcctggaagctaaaactaccaatgctgctttaatcgatgttactggtaaaaggccgtttatacttagcagatcaacctttgtgggtgctgggaagtacacggcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="73243" stop="75392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73543" g_stop="73561" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="74127" i_length="566">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74128" g_stop="74358" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="250" r_length="231" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74359" i_stop="74597" i_length="239">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74598" g_stop="75092" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="745" r_length="495" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E461984" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73543" e_stop="73561"/>
          <exon e_start="74128" e_stop="74358"/>
          <exon e_start="74598" e_stop="75092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAATTTCACATGACCTTAACTTTTGAATTTTGTTTGGTACTTCCCACTTAGTTTCCTCAAACTGTTCCATTCACATGCTTCTTCGTGATGTTAAAATATTATTCCCTCCGTTTCGATTTGTTTGTCTTATTTTCCTTTTTTGGCAACTTTTTAATTCTAACTTTCCCGATGACATGTTTAAGAACTCAAGATTAGAATACATTTTACATATCACAAGATTCAAAAATCTTCTTTATGTTCTTAAAAATTCTATACCTAGTCAAAACCAGACAAAGAAATTGAAATAGAGGGAGTAATTTTTCTACTTGTGTCAAGTACTCGTTAGTGTAGACCTCGGTTATATAACATTTCGTGATCCTATCCCTTTCAGTACTCATAATGGGATGTGTAGAGCTTTTACTAGTTGTGAATATGAGGATCGAGTTTTCTTTCTACAATATATACACTATGATTTGAGACAGATAGATGCACACATTGTTTTTATGCAAGCTATTGCAAATTGTTGCGACAGGATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGAATGTGGTTGCTGGCTATGCGAAAGCTCAGATCCCTCTCGAGGTCATGTGGACAGATATTGATCATATGGATGGTTACAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTCGATACACTTCATCAGAATGGCCAGAAATTTGTTCTCATATTGGATCCAGGTGAGTTATGAGTTATAACATATCTAATTTCTTGCTTTTGTTGATACTATACGTCTGTGGAATCAGTGTCAGGGTAGGCTGCCTACATCACACCCCTTATGGTGCAGCCTTTCCTAGACCCTCCATGAACGTGGGATGCTTTGTGCATCTGGCTGCACTTTATTTTGTTGAATTTATACTTGCGTTGAGAAATTGCGAAGGTATTGGTTCAAATGATTTCAATGATTTGTACTTCACAGGGATCAGCATAAATAGCTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATT</genome_strand>
        <mrna_strand>ATTCCATACTGGTCTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGCATGTGGTTGCTGGATATGCGAAAGCTCAGATCCCTCTTGAGGTCATGTGGACAGATATTGATCATATGGATGGTTATAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTTGATACACTTCATCACAATGGTCAGAAATTTGTTCTCATATTGGATCCAG...............................................................................................................................................................................................................................................GGATCAGCATAAATAGCTCATATGAGACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCGATGGTGTCCCTTATCTCGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGCAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGGCTCTGGCTTGACATGAACGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCGTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCCGGAAGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTCGGGAACGCCTTAGAGTACAATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACTACCAATGCTGCTTTAATCGATGTTACTGGTAAAAGGCCGTTTATACTTAGCAGATCAACCTTTGTGGGTGCTGGGAAGTACACGGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474021" ref_strand="+" ref_description="SGN-E474021 [cSTB-34-B5]">
      <seq>ctcatatgagacatacaagagagggatgcaagcagacgttttcatcaaacgcgatggtgtcccttatctcggcgaagtttggcctggaaaagtctactttcctgatttcataaatccccaaggcagactcttctggagtaatgaaatcaagattttccatgaccttctccccgtcgatgggctctggcttgacatgaacgagttatctaacttcatttcttctcctccgagcccatcttctacccttgacaaccctccttataagatcaataactccggaagcttacgtccaataaatgagaagactgtcccagcaacatcagtacatttcgggaacgcctcagagtacaatgttcataacctctatggattcctggaagctaaaactaccaatgctgctttaattgatgttactggtaaaaggccgtttatacttagcagatctacctttgtgggtgctgggaagtacacggcacattggaccggagacaatgcagccacatgggatgatttggcttatagtattcctggcattttgaattctggattgtttgggattcccatggttggagctgatatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="74314" stop="75496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74614" g_stop="75196" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E474021" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74614" e_stop="75196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGT</genome_strand>
        <mrna_strand>CTCATATGAGACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCGATGGTGTCCCTTATCTCGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCAAGGCAGACTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCGTCGATGGGCTCTGGCTTGACATGAACGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCATCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCCGGAAGCTTACGTCCAATAAATGAGAAGACTGTCCCAGCAACATCAGTACATTTCGGGAACGCCTCAGAGTACAATGTTCATAACCTCTATGGATTCCTGGAAGCTAAAACTACCAATGCTGCTTTAATTGATGTTACTGGTAAAAGGCCGTTTATACTTAGCAGATCTACCTTTGTGGGTGCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGATTTGGCTTATAGTATTCCTGGCATTTTGAATTCTGGATTGTTTGGGATTCCCATGGTTGGAGCTGATATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391580" ref_strand="+" ref_description="SGN-E391580 [TUS-16-A6]">
      <seq>ttatctaacttcatttcttctcctccgagcccctcttctacccttgacaaccctccttataagatcaataactcaggaggcttacgtccaataaacgagaagactgtcccagcaacatcagtacattttgggaataccttagagtacgatgttcataacctctacggattcctggaagctaaaacgaccaatgctgctttaatcgatgttactggaaaaagaccatttatacttagcagatctacctttgtgggttctgggaagtacacggcacattggaccggagacaatgcagccacatgggatgacttggcttatagtattcccagcgttttgagttctggactgtttgggattcccatggttggagctgatatatgtggctttggtagaaatactacagaagaattatgtcgtcgttggattcagctaggtgcattttatccctttgcaagggatcactctgagaagttcactatccatcaagagctatatatctgggattcagtagctgcaacagccagaaaggtgctcggactacggtatcgtctcttaccatacttctacacgctaatgttcgaggcccacaccaaaggcatccctatagcgcgtcctcttttcttttcatttcccaaggatgcaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="74516" stop="76395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74816" g_stop="75244" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75245" i_stop="75876" i_length="632">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75877" g_stop="76095" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="648" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E391580" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74816" e_stop="75244"/>
          <exon e_start="75877" e_stop="76095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAGGTACAAATTCTTGTCTTTAAAGAAGTACTTAGCTCCAGATATACATTAAAATTATATGATTTCAGTCCAGAAGTTCAAATGTGAAACTTCCAGGAAAAAAACTTCAAATAACTCCTTGCTATTGGCTGGATCAACTTGACTGGCTAAGATTAAAGAACAAAAAGAGATCGAATCGGAGAAAGCATGACTAGTTAGAAGTGCCTGGTCTTATTATATGTCTAAATTAAACTTGGTGATCTGTTGAATTTGATACTCGTTGTATGGTCGATTATTTTCGCATATCAACTAGTGCTCACTATCCAAAACCCAGAATCCTCATCTCATTAAATATAAATCCTAGATCCGCCTGTGGCTTCCATGACCTTAGAATTATGAGTGCTCAACTGGTCCAGTGAATCTTGTTTTCTGCCAACAATACTCGTAGTATTACTCTTGTGGTTTCTTGTTTTTCTGTTTCTGTTTATCCAATGTTCTTGTACTTCGATTATCATATTATTTTGTCGTTCTATGTTCTCTACGGGGAAACACAGTATGTGCTCTAGGAAAATGAAATTTCAATTTTCTATTCAATTCAGAATTCAAATATGAAGTACGATGCTTTTCTGATATCTGATTATCAACATCTAATGTAGCTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACT</genome_strand>
        <mrna_strand>TTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCAAGGATGCAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205081" ref_strand="+" ref_description="SGN-E205081 [cLEC-16-A3]">
      <seq>tatctaacttcatttcttctcctccgagcccctcttctacccttgacaaccctccttataagatcaataactcaggaggcttacgtccaataaacgagaagactgtcccagcaacatcagtacattttgggaataccttagagtacgatgttcataacctctacggattcctggaagctaaaacgaccaatgctgctttaatcgatgttactggaaaaagaccatttatacttagcagatctacctttgtgggttctgggaagtacacggcacattggaccggagacaatgcagccacatgggatgacttggcttatagtattcccagcgttttgagttctggactgtttgggattcccatggttggagctgatatatgtggctttggtagaaatactacagaagaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="74517" stop="75527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74817" g_stop="75227" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E205081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74817" e_stop="75227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTAT</genome_strand>
        <mrna_strand>TATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729632" ref_strand="+" ref_description="SGN-E729632 [LA21CE09]">
      <seq>gcagccacatgggatgacttggcttatagtattcccagcgttttgagttctggactgtttgggattcccatggttggagctgatatatgtggctttggtagaaatactacagaagaattatgtcgtcgttggattcagctaggtgcattttatccctttgcaagggatcactctgagaagttcactatccatcaagagctatatatctgggattcagtagctgcaacagccagaaaggtgctcggactacggtatcgtctcttaccatacttctacacgctaatgttcgaggcccacaccaaaggcatccctatagcgcgtcctcttttcttttcatttcccgaggatgcaaacacttacaccatcgactctcagtttctcatcggtaaggggttaatgatatcaccagtactgacatctggagcagtttcagttaacgcgtatttcccatctggtacctggttcaacctcttcaactattcaaactacgtcaacatgaagtccggtagctacatcagtctagacgcgcctcctgatcatatcaatgtgcatctcagagagggaaacattgtggtgatgcaaggagaagcaatgacaacaagagcagccagggatactccgtttgaacttgttgtcgcgatcaacaactggggaaatagttcaggggaagtcttcttggacgatggcgaagacgttgaaatgggaggagagggaggaaaatggagcctagtgaaatttcacactaatgttgtgaataagaagttatatctaagatcaaatgttgtgaatgaagagtttgctttgagtaagaattggagaatacancaagtgacttttcttggactgaaaaaagggggtgagtaaaaaaattgcatataatttgactactaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="74807" stop="76931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75107" g_stop="75244" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75245" i_stop="75876" i_length="632">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75877" g_stop="76631" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="894" r_length="756" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E729632" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75107" e_stop="75244"/>
          <exon e_start="75877" e_stop="76631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAGGTACAAATTCTTGTCTTTAAAGAAGTACTTAGCTCCAGATATACATTAAAATTATATGATTTCAGTCCAGAAGTTCAAATGTGAAACTTCCAGGAAAAAAACTTCAAATAACTCCTTGCTATTGGCTGGATCAACTTGACTGGCTAAGATTAAAGAACAAAAAGAGATCGAATCGGAGAAAGCATGACTAGTTAGAAGTGCCTGGTCTTATTATATGTCTAAATTAAACTTGGTGATCTGTTGAATTTGATACTCGTTGTATGGTCGATTATTTTCGCATATCAACTAGTGCTCACTATCCAAAACCCAGAATCCTCATCTCATTAAATATAAATCCTAGATCCGCCTGTGGCTTCCATGACCTTAGAATTATGAGTGCTCAACTGGTCCAGTGAATCTTGTTTTCTGCCAACAATACTCGTAGTATTACTCTTGTGGTTTCTTGTTTTTCTGTTTCTGTTTATCCAATGTTCTTGTACTTCGATTATCATATTATTTTGTCGTTCTATGTTCTCTACGGGGAAACACAGTATGTGCTCTAGGAAAATGAAATTTCAATTTTCTATTCAATTCAGAATTCAAATATGAAGTACGATGCTTTTCTGATATCTGATTATCAACATCTAATGTAGCTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAA-GGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAAT</genome_strand>
        <mrna_strand>GCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACANCAAGTGACTTTTCTTGGACTGAAAAAAGGGGGTGAGTAAAAAAATTGCATATAATTTGACTACTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461513" ref_strand="+" ref_description="SGN-E461513 [cPRO-8-P11]">
      <seq>gtattcccggcattttgaattctggattgtttgggattcccatggttggagctgatatatgtggctttggtagaaatactactgaagaattatgtcgccgttggattcagctaggtgcattttatccctttgcaagggatcactctgacaagttcactatccatcaagagctatatatctgggattcagtagctgcaacagccagaaaggtgctcggactacggtatcgtctcttaccatacttctacacgctaatgttcgaggcacacaccaaaggagtccctatagcgcgtcctcttttcttttcatttcccgaggatacaaacacttacgccatcgacactcagtttctcatcggtaaggggttaatgatatcaccagtactgacatctggagaagtttcagttaacgcgtatttcccatctggtacctggttcaacctcttcaactattcaaactacgtgaatatgaagtccggtagctacatcagtcttgacgcgcctcctgatcatatcaacgtgcacctcagggagggaaacattgtagtgatgcaaggagaagcaatgacaacaagagcagcccgggatactccgtttgaacttgttgtcgccatcaacaacaggggaaatagttcaggggaagttttcttggacgatggtgaagacgttgaaatgggaggagaagggagaaaatggagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="74835" stop="76767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75135" g_stop="75244" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75245" i_stop="75876" i_length="632">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75877" g_stop="76467" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="701" r_length="591" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E461513" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75135" e_stop="75244"/>
          <exon e_start="75877" e_stop="76467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAGGTACAAATTCTTGTCTTTAAAGAAGTACTTAGCTCCAGATATACATTAAAATTATATGATTTCAGTCCAGAAGTTCAAATGTGAAACTTCCAGGAAAAAAACTTCAAATAACTCCTTGCTATTGGCTGGATCAACTTGACTGGCTAAGATTAAAGAACAAAAAGAGATCGAATCGGAGAAAGCATGACTAGTTAGAAGTGCCTGGTCTTATTATATGTCTAAATTAAACTTGGTGATCTGTTGAATTTGATACTCGTTGTATGGTCGATTATTTTCGCATATCAACTAGTGCTCACTATCCAAAACCCAGAATCCTCATCTCATTAAATATAAATCCTAGATCCGCCTGTGGCTTCCATGACCTTAGAATTATGAGTGCTCAACTGGTCCAGTGAATCTTGTTTTCTGCCAACAATACTCGTAGTATTACTCTTGTGGTTTCTTGTTTTTCTGTTTCTGTTTATCCAATGTTCTTGTACTTCGATTATCATATTATTTTGTCGTTCTATGTTCTCTACGGGGAAACACAGTATGTGCTCTAGGAAAATGAAATTTCAATTTTCTATTCAATTCAGAATTCAAATATGAAGTACGATGCTTTTCTGATATCTGATTATCAACATCTAATGTAGCTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTA</genome_strand>
        <mrna_strand>GTATTCCCGGCATTTTGAATTCTGGATTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACTGAAGAATTATGTCGCCGTTGGATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGACAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCACACACCAAAGGAGTCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATACAAACACTTACGCCATCGACACTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGAAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTGAATATGAAGTCCGGTAGCTACATCAGTCTTGACGCGCCTCCTGATCATATCAACGTGCACCTCAGGGAGGGAAACATTGTAGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCCGGGATACTCCGTTTGAACTTGTTGTCGCCATCAACAACAGGGGAAATAGTTCAGGGGAAGTTTTCTTGGACGATGGTGAAGACGTTGAAATGGGAGGAGAAGGGAGAAAATGGAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544381" ref_strand="+" ref_description="SGN-E544381 [TUS-66-K24](-)">
      <seq>tagaaatactacagaagaattatgtcgtcgttgattcagctaggtgcattttatccctttgcaagggatcactctgagaagttcactatccatcaagagctatatatctgggattcagtagctgcaacagccagaaaggtgctcggactacggtatcgtctcttaccatacttctacacgctaatgttcgaggcccacaccaaaggcatccctatagcgcgtcctcttttcttttcatttcccgaggatgcaaacacttacaccatcgactctcagtttctcatcggtaaggggttaatgatatcaccagtactgacatctggagcagtttcagttaacgcgtatttcccatctggtacctggttcaacctcttcaactattcaaactacgtcaacatgaagtccggtagctacatcagtctagacgcgcctcctgatcatatcaatgtgcatctcagagagggaaacattgtggtgatgcaaggagaagcaatgacaacaagagcagccagggatactccgtttgaacttgttgtcgcgatcaacaactggggaaatagttcaggggaagtcttcttggacgatggcgaagacgttgaaatgggaggagagggaggaaaatggagcctagtgaaatttcacactaatgttgtgaataagaagttatatctaagatcaaatgttgtgaatgaagagtttgctttgagtaagaattggagaatacacaaagtgacttttcttggactgaaaaaaggggtgagtaaaataaatgcatataatttgactactaaaattagaacaaaaattgataaaagtgcatttggtgtttggaaacaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="74905" stop="76972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75205" g_stop="75244" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75245" i_stop="75876" i_length="632">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75877" g_stop="76662" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="825" r_length="786" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E544381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75205" e_stop="75244"/>
          <exon e_start="75877" e_stop="76662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAGGTACAAATTCTTGTCTTTAAAGAAGTACTTAGCTCCAGATATACATTAAAATTATATGATTTCAGTCCAGAAGTTCAAATGTGAAACTTCCAGGAAAAAAACTTCAAATAACTCCTTGCTATTGGCTGGATCAACTTGACTGGCTAAGATTAAAGAACAAAAAGAGATCGAATCGGAGAAAGCATGACTAGTTAGAAGTGCCTGGTCTTATTATATGTCTAAATTAAACTTGGTGATCTGTTGAATTTGATACTCGTTGTATGGTCGATTATTTTCGCATATCAACTAGTGCTCACTATCCAAAACCCAGAATCCTCATCTCATTAAATATAAATCCTAGATCCGCCTGTGGCTTCCATGACCTTAGAATTATGAGTGCTCAACTGGTCCAGTGAATCTTGTTTTCTGCCAACAATACTCGTAGTATTACTCTTGTGGTTTCTTGTTTTTCTGTTTCTGTTTATCCAATGTTCTTGTACTTCGATTATCATATTATTTTGTCGTTCTATGTTCTCTACGGGGAAACACAGTATGTGCTCTAGGAAAATGAAATTTCAATTTTCTATTCAATTCAGAATTCAAATATGAAGTACGATGCTTTTCTGATATCTGATTATCAACATCTAATGTAGCTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGT</genome_strand>
        <mrna_strand>TAGAAATACTACAGAAGAATTATGTCGTCGTT-GATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728053" ref_strand="+" ref_description="SGN-E728053 [LA16CC06]">
      <seq>gtcgttggattcagctaggtgcattttatccctttgcaagggatcactctgagaagttcactatccatcaagagctatatatctgggattcagtagctgcaacagccagaaaggtgctcggactacggtatcgtctcttaccatacttctacacgctaatgttcgaggcccacaccaaaggcatccctatagcgcgtcctcttttcttttcatttcccgaggatgcaaacacttacaccatcgactctcagtttctcatcggtaaggggttaatgatatcaccagtactgacatctggagcagtttcagttaacgcgtatttcccatctggtacctggttcaacctcttcaactattcaaactacgtcaacatgaagtccggtagctacatcagtctagacgcgcctcctgatcatatcaatgtgcatctcagagagggaaacattgtggtgatgcaaggagaagcaatgacaacaagagcagccagggatactccgtttgaacttgttgtcgcgatcaacaactggggaaatagttcaggggaagtcttcttggacgatggcgaagacgttgaaatgggaggagagggaggaaaatggagcctagtgaaatttcacactaatgttgtgaataagaagttatatctaagatcaaatgttgtgaatgaagagtttgctttgagtaagaattggagaatacacaaagtgacttttcttggactgaaaaaaggggtgagtaaaataaatgcatataatttgactactnaaattagaacaaaaattgataaaagtgcatttggtgttttggagatgggaggtctgtcagttctaattgggaaaagatttactatagagctaacactttgaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="75571" stop="77033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75877" g_stop="76733" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="871" r_length="857" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E728053" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75877" e_stop="76733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGTGTTTTGGAGATGGGAGGTCTGTCAGTTCTAATTGGAAAAGAATTTACTATAGAGCTAACACTTTGAAAATT</genome_strand>
        <mrna_strand>CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTNAAATTAGAACAAAAATTGATAAAAGTGCATTTGGTGTTTTGGAGATGGGAGGTCTGTCAGTTCTAATTGGGAAAAGATTTACTATAGAGCTAACACTTTGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544340" ref_strand="+" ref_description="SGN-E544340 [TUS-66-J24](-)">
      <seq>caagagctatatatctgggattcagtagctgcaacagccagaaaggtgctcggactacggtatcgtctcttaccatacttctacacgctaatgttcgaggcccacaccaaaggcatccctatagcgcgtcctcttttcttttcatttcccgaggatgcaaacacttacaccatcgactctcagtttctcatcggtaaggggttaatgatatcaccagtactgacatctggagcagtttcagttaacgcgtatttcccatctggtacctggttcaacctcttcaactattcaaactacgtcaacatgaagtccggtagctacatcagtctagacgcgcctcctgatcatatcaatgtgcatctcagagagggaaacattgtggtgatgcaaggagaagcaatgacaacaagagcagccagggatactccgtttgaacttgttgtcgcgatcaacaactggggaaatagttcaggggaagtcttcttggacgatggcgaagacgttgaaatgggaggagagggaggaaaatggagcctagtgaaatttcacactaatgttgtgaataagaagttatatctaagatcaaatgttgtgaatgaagagtttgctttgagtaagaattggagaatacacaaagtgacttttcttggactgaaaaaaggggtgagtaaaataaatgcatataatttgactactaaaattagaacaaaaattgataaaagtgcatttggtgtttggaaaaaaaaaagaaaaaaaaaaactcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="75631" stop="76972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75931" g_stop="76662" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="760"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E544340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75931" e_stop="76662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGT</genome_strand>
        <mrna_strand>CAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467238" ref_strand="+" ref_description="SGN-E467238 [cSTB-44-A7]">
      <seq>gaattcggcaccgaggcaccaaaggcgtccctatagcgcgtcctcttttcttttcattccccgaggacacaaacacttacaccatcgacactcagtttctcatcggtaaggggttaatgatatcaccagtactgacatctggagcagtttcagttaacgcgtatttcccatctggtacctggttcaacctcttcaactattcaaactacgtggatatgaagtccggtagctacatcagcctagacgcgcctcctgatcatatcaacgtgcacctcagggagggaaacattgtggtgatgcaaggagaagcaatgacaacaagagcagcccgggatactccatttgaacttgttgtcgccatcaacaacaggggaaatagttcaggggaagtattcttggacgatggcgaagacattgaaatgggaggagagggaggaaaatggtgcctagtgaaatttcacactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="75735" stop="76783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76036" g_stop="76484" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="466" r_length="449" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E467238" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76036" e_stop="76484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAA</genome_strand>
        <mrna_strand>ACCAAAGGCGTCCCTATAGCGCGTCCTCTTTTCTTTTCATTCCCCGAGGACACAAACACTTACACCATCGACACTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTGGATATGAAGTCCGGTAGCTACATCAGCCTAGACGCGCCTCCTGATCATATCAACGTGCACCTCAGGGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCCGGGATACTCCATTTGAACTTGTTGTCGCCATCAACAACAGGGGAAATAGTTCAGGGGAAGTATTCTTGGACGATGGCGAAGACATTGAAATGGGAGGAGAGGGAGGAAAATGGTGCCTAGTGAAATTTCACACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473155" ref_strand="+" ref_description="SGN-E473155 [cSTB-31-G8]">
      <seq>gaagtgtagaggcttagctcttgcaattgttgtattgagtggactactttcgcataaaagggggctagacgaatggcaaaaggtgaaagatcacctttggaagaacattattgaagataaatctattgaaatctccaacatactatcattaagctacaatgatttgtcaactgcgctcaagcagtgttttttatactttggtacttttccagaagataaagtgctcgaggctgaaaacataatatggttgtggatggcggagggtttcataccaagaggagaagaaagaatggaggatgtcgctgaaggcttcttgaatgagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="94854" stop="93930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94555" g_stop="94230" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E473155" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94555" e_stop="94230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGTAGGGGCTTACCGCTTGCAATTGTTGTATTGAGCGGACTACTTTCACATAAAAAGGGGCTAAACGAATGGCAAAAGGTGAAAGATCACCTTTGGAAGAACATTAAAGAAGATAACTCTATTGAAATCTCTAATATACTATCCTTAAGCTACAATGATTTGTCAACTGCGCTTAAGCAGTGTTTTCTATACTTTGGTACTTTTCCAGAAGATCGAGTGGTCGGGGTTGATAACATAATACGATTGTGGATGGCGGAGGGTTTCATACCAAGAGGAGAAGAAAGAATGGAGGATGTCGCTGAAGGCTTCTTGAATGAACTGA</genome_strand>
        <mrna_strand>GAAGTGTAGAGGCTTAGCTCTTGCAATTGTTGTATTGAGTGGACTACTTTCGCATAAAAGGGGGCTAGACGAATGGCAAAAGGTGAAAGATCACCTTTGGAAGAACATTATTGAAGATAAATCTATTGAAATCTCCAACATACTATCATTAAGCTACAATGATTTGTCAACTGCGCTCAAGCAGTGTTTTTTATACTTTGGTACTTTTCCAGAAGATAAAGTGCTCGAGGCTGAAAACATAATATGGTTGTGGATGGCGGAGGGTTTCATACCAAGAGGAGAAGAAAGAATGGAGGATGTCGCTGAAGGCTTCTTGAATGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255576" ref_strand="+" ref_description="SGN-E255576 [cLEG-36-A22]">
      <seq>gtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactctcccatgcttctctttgccagacatcatcaaccaccacaaggtatttgcgttctttcaatagatcacgaaggtggttttctagatctctttcatccatcttttccaacaatcctagagttcccatggtgcgaccttggatggattttatgatagtcttaagaagatccattgtgttgtactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="94017" stop="95256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94316" g_stop="94956" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E255576" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94316" e_stop="94956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTATCAACCCCGACCACTCGATCTTCTGGAAAAGTACCAAAGTATAGAAAACACTGCTTAAGCGCAGTTGACAAATCATTGTAGCTTAAGGATAGTATATTAGAGATTTCAATAGAGTTATCTTCTTTAATGTTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCGTTTAGCCCCTTTTTATGTGAAAGTAGTCCGCTCAATACAACAATTGCAAGCGGTAAGCCCCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCATTGCTCGAACATCAAGTAGTTTCCTACGAAAGAGATCCCAACTTTCTTCTTGACTTAGAAAACGAAGTTTATGAACAAAACCTCTATTGTCTGCCCTTTCAGCAACATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGCTATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTCTCCCATACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAGTAGATCACGAATGTAAATTTCAAGATCTCCTTCTGTCATCCTTTCCAACAAATCTAGAGTTTCCTTAGTGCGACCTTGGATGGATTTTATGATATTCCTAAGAAGATCCATTGTGTTGTACTCTTG</genome_strand>
        <mrna_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308984" ref_strand="+" ref_description="SGN-E308984 [cLEY-23-H19]">
      <seq>gcaagaccactcttgcaagaaacctctacagaagtcctcgtatagtcaatacctggcctacacgtgcttggatatgtgtttctcaagagtacaacacaatggatcttcttaagactatcataaaatccatccaaggttgcaccatgggaactctaggattgttggaaaagatggatgaaagagatctagaaaatcaccttcgtgatctactgaaagaacgcaaataccttgtagtggttgatgatatatggcagagagaagcatgggaaagtttgaaaagagcattcccggatggcgagaagggcagcagagtcattattaccacgcgcaaagaggatgttgctgaaagagcagacgacagaggttttgttcataaacttcgtttcctaagccaagaagaaagttgggatctcttttgcaggaaactacttgatgttcgagcaatggttccagaaatggaaagtctagctgaggatatggtggaaaagtgtagaggcttacctcttgcgattgttgtattgagcggactactttcgcataaaaaggggctaaacgaatggaaaaaggtgaaagatcacctttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="95339" stop="94154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95039" g_stop="94454" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E308984" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95039" e_stop="94454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGACCACTCTTGCCAGAAAACTTTACAACTGTCCTAATATAACCTCTAGTTTCCCTACACGCGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAGGAATATCATAAAATCCATCCAAGGTCGCACTAAGGAAACTCTAGATTTGTTGGAAAGGATGACAGAAGGAGATCTTGAAATTTACATTCGTGATCTACTGAAAGAACGCAAATACCTTGTGGTGGTTGATGATGTATGGGAGAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATAGCAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTTGCTGAAAGGGCAGACAATAGAGGTTTTGTTCATAAACTTCGTTTTCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCGTAGGAAACTACTTGATGTTCGAGCAATGGTTCCAGAAATGGAAAGTCTAGCTAAGGATATGGTGGAAAAGTGTAGGGGCTTACCGCTTGCAATTGTTGTATTGAGCGGACTACTTTCACATAAAAAGGGGCTAAACGAATGGCAAAAGGTGAAAGATCACCTTTGGAA</genome_strand>
        <mrna_strand>GCAAGACCACTCTTGCAAGAAACCTCTACAGAAGTCCTCGTATAGTCAATACCTGGCCTACACGTGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCATAAAATCCATCCAAGGTTGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAAGAGATCTAGAAAATCACCTTCGTGATCTACTGAAAGAACGCAAATACCTTGTAGTGGTTGATGATATATGGCAGAGAGAAGCATGGGAAAGTTTGAAAAGAGCATTCCCGGATGGCGAGAAGGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTTGCTGAAAGAGCAGACGACAGAGGTTTTGTTCATAAACTTCGTTTCCTAAGCCAAGAAGAAAGTTGGGATCTCTTTTGCAGGAAACTACTTGATGTTCGAGCAATGGTTCCAGAAATGGAAAGTCTAGCTGAGGATATGGTGGAAAAGTGTAGAGGCTTACCTCTTGCGATTGTTGTATTGAGCGGACTACTTTCGCATAAAAAGGGGCTAAACGAATGGAAAAAGGTGAAAGATCACCTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258522" ref_strand="+" ref_description="SGN-E258522 [cLEG-47-C16]">
      <seq>gtgtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcaacgatatcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="106503" stop="107497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106802" g_stop="107197" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E258522" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106802" e_stop="107197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTATCAACCTTGACCACTTGATCTTCCGGGAAAATACCAAAGTAGAGAAAACACTGCTTGAGCGCAATTGACAAATCATTGTAGCTTAATGACAGTATGTTGGAGATTTCAATAGATTTATCTTCTTTTATGTTCTTCCAAAGGTGATGTTTAACCTTTTTCCATTCGTTTATCCCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCACTGATTGAACATCAAGTAGTTTCCTACAAAAGAGATCCCAACTTTCTTCTTGGCTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCATCTGCTCTTTCAGCGACATCCTCTT</genome_strand>
        <mrna_strand>GTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAACGATATCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258424" ref_strand="+" ref_description="SGN-E258424 [cLEG-47-M4]">
      <seq>gtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactctcccatgcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="106505" stop="107571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106804" g_stop="107272" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E258424" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106804" e_stop="107272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTATCAACCTTGACCACTTGATCTTCCGGGAAAATACCAAAGTAGAGAAAACACTGCTTGAGCGCAATTGACAAATCATTGTAGCTTAATGACAGTATGTTGGAGATTTCAATAGATTTATCTTCTTTTATGTTCTTCCAAAGGTGATGTTTAACCTTTTTCCATTCGTTTATCCCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCACTGATTGAACATCAAGTAGTTTCCTACAAAAGAGATCCCAACTTTCTTCTTGGCTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCATCTGCTCTTTCAGCGACATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGCCATCTGGGAATGCTCTCTTCAAACTCTCCCATGCTTCTT</genome_strand>
        <mrna_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585162" ref_strand="+" ref_description="SGN-E585162 [66881]">
      <seq>ctcaaggattgcgtttgcatctgtaggaaggagaagaaattctacaatgtcgccaaggagattcaatcactcaagcaacgaatcatggatatctcttgcaaacgagagacttatggtattacaaatatcaatagtaatgctggagaagggccaagtaatcaggttagaacattgaggagaactacctcatatgtggatgaccaggataacatctttgttggacttcaggatgttgtagaaaaattgttagctgaacttctcaaagcagagcctcgtcgaagggtcctctccatttatggaatggggggtttaggcaagacctctcttgcgagaaagctttacaccagtcctgatatactcaatagattccgtacacgcgcttggatatgtgtttcgcaagagtacaacaccatggatcttcttcggaatatcataaaatccgtccaaggtcgcaccaaggaaactctagatttgttggaaaggatgacagaaggagatctagaaatttatcttcgtgatctattaaaagaacgcaaatactttgtggtggttgatgatgtatggcagagagaagcatgggagagtttgaaacagagcatttccggatggcaagaatggcagcagagtcattattaccacgcgcaaagaggatgtcggctggaaagagcacgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="108137" stop="106870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107837" g_stop="107170" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-E585162" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107837" e_stop="107170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGCTTGCGCTTGCATATGTAGGAAGGAGAAGAAATTATACAATGTCTCCAAGGAGATTCAATCACTCAAGCAAAGAATCATGGATATATCTCGCAAACGAGATACTTATGGTATTACAAATATC-A-ACTCA-GGAGATCAAGGGCCAAGTAATCAGGTTACAACATTGAGGAGAACTACCTCATATGTGGATGACCACGATTACATTTTTGTTGGACTTCAGGATGTTGTACAAACATTGCTAGGTCAACTTCTCAAACCAGAGCCGCGGCGAACCGTCCTCTCCATTTATGGAATGGGGGGTTTAGGCAAGACCACTCTTGCCAGAAAACTTTACACCCGTCCTGATATACTCAACAGCTTCCATACACGCGCTTGGATATGTGTTTCGCAAGAGTACAACACTGCGGATCTTCTTAGGAATATCATAAAATCCATCCAAGGTCGCACCAAGGAAACTCTAGATTTGTTGGAAAGGATGACAGAAGGAGATCTAGAAATTTATCTTCGTGATCTATTAAAAGAACGCAAATACCTTGTGGTGGTTGATGATTTATGGAAGAAAGAAGCATGGGAGAGTTTG-AAGAGAGCATTCCCAGATGGCAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTC-GCT-GAAAGAGCA-GATGA</genome_strand>
        <mrna_strand>CTCAAGGATTGCGTTTGCATCTGTAGGAAGGAGAAGAAATTCTACAATGTCGCCAAGGAGATTCAATCACTCAAGCAACGAATCATGGATATCTCTTGCAAACGAGAGACTTATGGTATTACAAATATCAATAGTAATGCTGGAGAAGGGCCAAGTAATCAGGTTAGAACATTGAGGAGAACTACCTCATATGTGGATGACCAGGATAACATCTTTGTTGGACTTCAGGATGTTGTAGAAAAATTGTTAGCTGAACTTCTCAAAGCAGAGCCTCGTCGAAGGGTCCTCTCCATTTATGGAATGGGGGGTTTAGGCAAGACCTCTCTTGCGAGAAAGCTTTACACCAGTCCTGATATACTCAATAGATTCCGTACACGCGCTTGGATATGTGTTTCGCAAGAGTACAACACCATGGATCTTCTTCGGAATATCATAAAATCCGTCCAAGGTCGCACCAAGGAAACTCTAGATTTGTTGGAAAGGATGACAGAAGGAGATCTAGAAATTTATCTTCGTGATCTATTAAAAGAACGCAAATACTTTGTGGTGGTTGATGATGTATGGCAGAGAGAAGCATGGGAGAGTTTGAAACAGAGCATTTCCGGATGGCAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTCGGCTGGAAAGAGCACGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698502" ref_strand="+" ref_description="SGN-E698502 [FA06CC06]">
      <seq>cccgttacaactcctaattctttcccctttcatcaagcgatttgtctgtgtcttcttgatttttccctctttctctccattagacactcaattttcttttgcgtatttgcctttagatttttccttctcgtatttacttgaattgggtataacccatttgaattttcgactttgtatctgatttttcggtttaaaaatcgattcttttggtcaagaactgatatgggtgttggaatttctgtgcttatagccctaaagtcagtaactttattcatattatttgcaactctcaagaattatgggtacccattattgtcaataccttgtttgtatgcatcattggtatctttgttggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaacacagatgggacattcccaatttggtcacttgtgatgtttagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttctgaagggttgtatgttgggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatactaggtcacctcacccagctggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109645" stop="110936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109939" g_stop="110636" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E698502" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109939" e_stop="110636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAACAACTCCTAATTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCT-GATAT</genome_strand>
        <mrna_strand>CCCGTTACAACTCCTAATTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCGACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCCTAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCACCCAGCTGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242624" ref_strand="+" ref_description="SGN-E242624 [cLED-30-G7]">
      <seq>ttctttcccctttcatcaagcgatttgtctgtgtcttcttgatttttccctctttctctccattagacactcaattttcttttgcgtatttgcctttagatttttccttctcgtatttacttgaattgggtataacccatttgaattttcaactttgtatctgatttttcggtttaaaaatcgattcttttggtcaagaactgatatgggtgttggaatttctgtgcttatagccataaagtcagtaactttattcatattatttgcaactctcaagaattatgggtacccattattgtcaataccttgtttgtatgcatcattggtatctttgttggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaacacagatgggacattcccaatttggtcacttgtgatgtttagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccttatagtgagatttctgaagggttgtatgtttgggggttggccttgttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109656" stop="110800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109956" g_stop="110500" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E242624" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109956" e_stop="110500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATG-TTGGGGGTTGGCCTTGTTCAC</genome_strand>
        <mrna_strand>TTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCTTATAGTGAGATTTCTGAAGGGTTGTATGTTTGGGGGTTGGCCTTGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242621" ref_strand="+" ref_description="SGN-E242621 [cLED-30-E1]">
      <seq>ttctttcccctttcatcaagcgatttgtctgtgtcttcttgatttttccctctttctctccattagacactcaattttcttttgcgtatttgcctttagatttttccttctcgtatttacttgaattgggtataacccatttgaattttcaactttgtatctgatttttcggtttaaaaatcgattcttttggtcaagaactgatatgggtgttggaatttctgtgcttatagccataaagtcagtaactttattcatattatttgcaactctcaagaattatgggtacccattattgtcaataccttgtttgtatgcatcattggtatctttgttggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaacacagatgggacattcccaatttggtcacttgtgatgtatagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109656" stop="110766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109956" g_stop="110466" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E242621" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109956" e_stop="110466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCT</genome_strand>
        <mrna_strand>TTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTATAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368558" ref_strand="+" ref_description="SGN-E368558 [TUS-23-B20]">
      <seq>ttctttcccctttcatcaagcgatttgtctgtgtcttcttgatttttccctctttctctccattagacactcaattttcttttgcgtatttgcctttagatttttccttctcgtatttacttgaattgggtataacccatttgaattttcaactttgtatctgatttttcggtttaaaaatcgattcttttggtcaagaactgatatgggtgttggaatttctgttcttatagccataaagtcagtaactttattcatattatttgcaactctcaagaattatgggtacccattattgtcaataccttgtttgtatgcatcattggtatctttgttggcagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaacacagatggtacattcccaattaggtcacttgtgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109656" stop="110683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109956" g_stop="110383" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E368558" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109956" e_stop="110383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGT</genome_strand>
        <mrna_strand>TTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTTCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGCAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGTACATTCCCAATTAGGTCACTTGTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699038" ref_strand="+" ref_description="SGN-E699038 [FA08BG02]">
      <seq>ttcccctttcatcaagcgatttgtctgtgtcttcttgatttttccctctttctctccattagacactcaattttcttttgcgtatttgcctttagatttttccttctcgtatttacttgaattgggtataacccatttgaattttcgactttgtatctgatttttcggtttaaaaatcgattcttttggtcaagaactgatatgggtgttggaatttcctgtgcttatagccctaaagtcagtaactttattcatattatttgcaactctcaagaattatgggtacccattattgtcaataccttgtttgtatgcatcattggtatctttgttggtaccattagctgctaacccttcaattgatcttcccaattcttttggggaaaaacacacatgggacattccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109660" stop="110664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109960" g_stop="110364" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E699038" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109960" e_stop="110364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTT-CTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTT-CCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCA</genome_strand>
        <mrna_strand>TTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCGACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCCTGTGCTTATAGCCCTAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTACCATTAGCTGCTAACCCTTCAATTGATCTTCCCAATTCTTTTGGGGAAAAACACACATGGGACATTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462711" ref_strand="+" ref_description="SGN-E462711 [cPRO-12-B9]">
      <seq>cgatttgcctctgtcttcttgattttccctctttctctccattagactctcaattttcttttgggtatttgccttgagattttcccttctcgtattttcttgaattgggtataacccatttgaattttcgactttgtatctgattttttgggttaaaaatcgattcttttggtcaagaactgaaatgggtgttggaatttctgtgcttataggcctaaagtcagcaactttattcatattatttgcaactctcaagaattatggttacccattattgtcaataccttgtttgtatgcatcattggtatctttattggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaactcagatgggacattcccaatttggtcacttgttatgtttagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttctgaaaggttgtatgttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109676" stop="110785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109976" g_stop="110485" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E462711" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109976" e_stop="110485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGG</genome_strand>
        <mrna_strand>CGATTTGCCTCTGTCTTCTTGATTT-TCCCTCTTTCTCTCCATTAGACTCTCAATTTTCTTTTGGGTATTTGCCTTGAGATTTTCCCTTCTCGTATTTTCTTGAATTGGGTATAACCCATTTGAATTTTCGACTTTGTATCTGATTTTTTGGGTTAAAAATCGATTCTTTTGGTCAAGAACTGAAATGGGTGTTGGAATTTCTGTGCTTATAGGCCTAAAGTCAGCAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGTTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTATTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACTCAGATGGGACATTCCCAATTTGGTCACTTGTTATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAAGGTTGTATGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411462" ref_strand="+" ref_description="SGN-E411462 [STM-14-B8]">
      <seq>ttttcttttgcgtatttgccttaagattttcccttctcgtattttcttgaattgggtataacccatttgaattttcgactttgtatctgattttttggcataaaaatcgattcttttggtcaagaactgaaatgggtgttggaatttctgtgcttataggcctaaagtcagtaactttattcatattatttgcatctctcaagaattatgggtacccattattgtcaataccttgtctgtatgcatcattggtatctttattggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaactcagatgggacattcccaatttggtcacttgttatgtttagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttctgaagggttgtatgttgggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtatttcaacttgggatactaggtcacctcagccagctgatatagaggttgctgttaagtgggcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109730" stop="110961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110030" g_stop="110661" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E411462" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110030" e_stop="110661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGT</genome_strand>
        <mrna_strand>TTTTCTTTTGCGTATTTGCCTTAAGATTTTCCCTTCTCGTATTTTCTTGAATTGGGTATAACCCATTTGAATTTTCGACTTTGTATCTGATTTTTTGGCATAAAAATCGATTCTTTTGGTCAAGAACTGAAATGGGTGTTGGAATTTCTGTGCTTATAGGCCTAAAGTCAGTAACTTTATTCATATTATTTGCATCTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTCTGTATGCATCATTGGTATCTTTATTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACTCAGATGGGACATTCCCAATTTGGTCACTTGTTATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTTCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTGTTAAGTGGGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468838" ref_strand="+" ref_description="SGN-E468838 [cSTB-6-I16]">
      <seq>ttttcttttgcgtatttgccttaagattttcccttctcgtattttcttgaattgggtataacccatttgaattttcgactttgtatctgattttttggcataaaaatcgattcttttggtcaagaacctgaaatgggtgttggaatttctgtgcttataggcctaaagtcagtaactttattcatattatttgcatctctcaagaattatgggtaccccattattgtcaataccttgtctgtatgcatcattggtatctttattggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaactcagatgggacattcccaatttggtcacttgttatgtttagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttctgaagggttgtatgttgggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109730" stop="110884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110030" g_stop="110584" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E468838" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110030" e_stop="110584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAA-CTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTA-CCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATG</genome_strand>
        <mrna_strand>TTTTCTTTTGCGTATTTGCCTTAAGATTTTCCCTTCTCGTATTTTCTTGAATTGGGTATAACCCATTTGAATTTTCGACTTTGTATCTGATTTTTTGGCATAAAAATCGATTCTTTTGGTCAAGAACCTGAAATGGGTGTTGGAATTTCTGTGCTTATAGGCCTAAAGTCAGTAACTTTATTCATATTATTTGCATCTCTCAAGAATTATGGGTACCCCATTATTGTCAATACCTTGTCTGTATGCATCATTGGTATCTTTATTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACTCAGATGGGACATTCCCAATTTGGTCACTTGTTATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609176" ref_strand="+" ref_description="SGN-E609176 [25179]">
      <seq>atttcttgaattgggtataacccatttgaattttcgactttgtatctgattttttgggttaaaaatcgattcttttggtcaagaactgaaatgggtgttggaatttctgtgcttataggcctaaagtcagcaactttattcatattatttgcaactctcaagaattatggttacccattattgtcaataccttgtttgtatgcatcattggtatctttattggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaattcagatgggacattcccaatttggtcacttgttatgtttagtccttacttgtattttgttagggggttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttctgaagggttgtatgttgggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatacaaggtcacctcagccagctgatatagaggttgctgttaagtggacttgtagaagaacgagctcagaagatacctgttttcatccattgtgcatatggtcatggaaggagtgttcgcaggtcatgtgtgcactgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109770" stop="113589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110070" g_stop="110707" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543">
            <donor d_prob="0.914" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113251" g_stop="113289" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="679" r_length="41" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E609176" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110070" e_stop="110707"/>
          <exon e_start="113251" e_stop="113289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAA-AAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATGGTATGATTGTGAACTTTAAAACTTTTTGTTTCAGATGAATGTATTTGTAGTCGATTATCGCATTATTTTGTTTTCGTTACTGATCTTTCTCCTGTTGGTTGTTGTTATTGCTCCAGTATCTGTATTCCCTTTTTCAAACTGTTTGTCATGCTTTATTTAAGTTGAGGGTCTATCCGGAACAACCTCTCTATCGTAGGGGTAAGATATGTGTATATTTAACCCTCACTAGACCTCACTTGTGGGATTACACTGGGTATGCCATTGTTGTCAAGTGGGGTCATGTTTTTCTATGTCCTTTAGATGTTACTACCTAAGTCCCAATTTAAGTGTGGTAGTTTGACTAGGCGCAGAAGTTGAATGAATAAAGGGAGAATTATGAATCTCGTGGTCTAAAATTAAAGATGTGTGTGGTTCTTTAAATCTTGTGGTTTTAAGTTTTCATGTCAGATGTTGGAATAGAGAAACTTACTACATATAGAAAGAGACACTGTTTTAGGACAGACCAAATTATAGCAAGACACTTAGATGGGGACGTAAGGAGTAAATGTTTCAGTAGTTGCTTGCTTGCCTGCCCTTCATTAGTGTGTGATTGTGGTAAAGTGGTTTCTTAAATTGCTTCCTTTGGGTTCATATTTTGGGTTTCACCTATTGTATTTATCACTGAAAATCATAGAACTTCTCAACTGATATTTCATAGGAGAAAGCTAGCAGTCTATATCCATTTTCCATAAGGAAAGCATGAGTTGTCTCGGGCCGAATTGACTAATCCATAAGGTGACTTATCCATATATGAGAGCTCCTAGTCCTGTGTGATTTACGAATGGTAGGCTTGGTTTAGGAATATCCAAAACAGTTGTAAAAATCGTCCATTTGCTTTTTTTCCCAATATTAAAACTTAAGGTAGTCATAAGGTAATCATGTTTATAATGTTCTTCAAGTTTTAGAAAATATGGTTGTTACTAACTTTCTTTAGTTTTTAAACTGCTTCCATATAGACATAAATGCTATACTACTTTGAGTGGTTCTTTAAACAGAAGCCTAGTAACACTTTTGGGTCATGCCTTGAAGATTTGACACCATAGAAGATGAATATTTGATAAAATTTCGTGTATTCTCATAGGTACCATGTCGGTTAGTCATAGCATATTGATATTGGTTAACAAAATGGACCTTAAGCCTAACTCATGAAGTGAAGGTCGTCTAAAATATATAACAACCTATTCTTTCGATTTTTGATGGAGGATTTTAAAGAGAGGAACAAAATGAAGTGGTAATCCTCAGATGGTCCATCCCAGTTGTTGGAACTAGACAGGAACTAGTATACCATGCTAAACTTGTGATTGCTTTGACTCCACTGTGAAATTTTTGGCTACTTATTAGCAGCAAGTGGTGCTTCTGAGGTCGTTAAAGACAATCCCATAGTATTGCATAGTTACATTAGCTATTGTATTTGCACTTCAATTTGTGCACGTGCATTTCAATAAATAGATCTTCTGTACAACTTGCAGTTTTTTTCTTTGAGAAAAGGTAACAGAAAATTGATTTCACTCTGCGACTGGTAATTTACATTTTGAAAGCCAGTTTTTGGTTATGAAAGTACAGTTCCTTAGGCTAGGTTGACTGATAGATACCAATCAGCCTCACAAACAGGAGGTCAATGTGCAGAGCCTTATTAAAATACTCTTTGCTGCCAAATAATGTGATAAATAAGGAAGCATCCAAGGGTGACCTAGTGATCAATGAAGTGGATTGAGAACCATGAGGTCTTAGGTTTCAAATCCCAGCATAGACTTAAAACACTATCTGATACCTGTTGTTGGTCAGACGAGGTAGGTATCCCGTGGAATTAATCGAGGTGCACAAAAGCATATCCCAGACACCACTGTCATTAAAAAAGTGATGATTAAGGATCTCTATTAAAACAAATCTGCAGGCTTCGCTCTGTGTTTGTGTTAAGAGTTTTATATGAGCGGTTTCACGCTGCTTTTAGAAGTCTCCACGTTTTGATTGTGAGATTTTCTTAGTAATAACCATTGATACAACGTGCAGGCCCATAGTTAAAGCTATGAAACCTCAAGTCTTTCCGGGAAGTTATCATTTTAGGATAAAGATAGTAGAAGTAAATTTGTTCTCTTGCATGTAGTGACAACTCATGTACTACTCTCTTTGTTTCAGTCTGTTTGTCTACTTTTCTTTTTAGTCCGTTTAAAAAAGAAGACCTCTTTTCTTTCTTGTCAACTTTTTACTTTCAAATTTTCACATGACGAGTTTAAGACCACACGATTAAAGTATTTTGGTATATTTGATACATCTTTTGCTTAAGACCATAAGACTCAAAAGTCATCTTTACTTTTTTAAACTCCATTTCAAGTCAAAACTAGACTTAACAAATTGAAACGGAGGGAGTACTTAAACTGCATCAATCAACAGCAATGCCTGCAGGAAACTGTCTCGAGGAGCTTAACTTCCTTATTAGTTTCTTTGATGCTTCAATAGATCATTGCAATGTAACATAAAACAAATTATTGATTTGTTTCCTCTAGGTCATGGAAGGAGCGTT-GCA-GTCATGTGTGCACTGTTAG</genome_strand>
        <mrna_strand>ATTT-CTTGAATTGGGTATAACCCATTTGAATTTTCGACTTTGTATCTGATTTTTTGGGTTAAAAATCGATTCTTTTGGTCAAGAACTGAAATGGGTGTTGGAATTTCTGTGCTTATAGGCCTAAAGTCAGCAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGTTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTATTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAATTCAGATGGGACATTCCCAATTTGGTCACTTGTTATGTTTAGTCCTTACTTGTATTTTGTTAGGGGGTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACAAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTGTTAAGTGGACTTGTAGAAGAACGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAAGGAGTGTTCGCAGGTCATGTGTGCACTGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457080" ref_strand="+" ref_description="SGN-E457080 [cPRO-1-G18]">
      <seq>cttgaattgggtataacccatttgaattttcgactttgtatctgattttttgggttaaaaatcgattcttttggtcaagaactgaaatgggtgttggaatttctgtgcttataggcctaaagtcagcaactttattcatattatttgcaactctcaagaattatggttacccattattgtcaataccttgtttgtatgcatcattggtatctttattggtagcattaactgctaacccttcaattgatcttcccattcttttggggaaaaactcagaagggacattccccatttgggcacctggtaaggttaagccctacctggaatttggtaaggggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109775" stop="110714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110075" g_stop="110414" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E457080" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110075" e_stop="110414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCA-CTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTT</genome_strand>
        <mrna_strand>CTTGAATTGGGTATAACCCATTTGAATTTTCGACTTTGTATCTGATTTTTTGGGTTAAAAATCGATTCTTTTGGTCAAGAACTGAAATGGGTGTTGGAATTTCTGTGCTTATAGGCCTAAAGTCAGCAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGTTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTATTGGTAGCATTAACTGCTAACCCTTCAATTGATCTTCCCATTCTTTTGGGGAAAAACTCAGAAGGGACATTCCCCATTTGGGCACCTGGTAAGGTTAAGCCCTACCTGGAATTTGGTAAGGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268327" ref_strand="+" ref_description="SGN-E268327 [cLEI-13-E5]">
      <seq>tgatatgggtgttggaatttctgtgcttatagccataaagtcagtaactttattcatattatttgcaactctcaagaattatgggtacccattattgtcaataccttgtttgtatgcatcattggtatctttgttggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaacacagatgggacattcccaatttggtcacttgtgatgtttagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttctgaagggttgtatgttgggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatactaggtcacctcagccagctgatatagaggttgctattaagtgggcttgtagaaaaagagctcagaagatacctgttttcatccattgtgcatatggtcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109857" stop="111012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110157" g_stop="110707" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E268327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110157" e_stop="110707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG</genome_strand>
        <mrna_strand>TGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390924" ref_strand="+" ref_description="SGN-E390924 [TUS-46-D14]">
      <seq>tgggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatactaggtcacctcagccagctgatatagaggttgctattaagtgggcttgtagaaaaagagctcagaagatacctgttttcatccattgtgcatatggtcatggaaggagcgttgcagtcatgtgtgcactgttagtagctcttggtctagcagaagactggaaaaatgctgagaaattgatcaaagaaaaacggccatacatacgaatgaacgctctgcatcgcaaagctttagaggaatggtcgaaggatcgtctctcttccccaaaagttggagttagttccgtgattctgtcgagtgctaacgaccgttcctgatcaattgactgcagttgcaagaccaattaattatatagatgattggctgtttgtcttcacttttgattacacactatacttgatgattgagatttttgcttctttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="110181" stop="113880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110481" g_stop="110707" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113251" g_stop="113580" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="557" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E390924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110481" e_stop="110707"/>
          <exon e_start="113251" e_stop="113580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATGGTATGATTGTGAACTTTAAAACTTTTTGTTTCAGATGAATGTATTTGTAGTCGATTATCGCATTATTTTGTTTTCGTTACTGATCTTTCTCCTGTTGGTTGTTGTTATTGCTCCAGTATCTGTATTCCCTTTTTCAAACTGTTTGTCATGCTTTATTTAAGTTGAGGGTCTATCCGGAACAACCTCTCTATCGTAGGGGTAAGATATGTGTATATTTAACCCTCACTAGACCTCACTTGTGGGATTACACTGGGTATGCCATTGTTGTCAAGTGGGGTCATGTTTTTCTATGTCCTTTAGATGTTACTACCTAAGTCCCAATTTAAGTGTGGTAGTTTGACTAGGCGCAGAAGTTGAATGAATAAAGGGAGAATTATGAATCTCGTGGTCTAAAATTAAAGATGTGTGTGGTTCTTTAAATCTTGTGGTTTTAAGTTTTCATGTCAGATGTTGGAATAGAGAAACTTACTACATATAGAAAGAGACACTGTTTTAGGACAGACCAAATTATAGCAAGACACTTAGATGGGGACGTAAGGAGTAAATGTTTCAGTAGTTGCTTGCTTGCCTGCCCTTCATTAGTGTGTGATTGTGGTAAAGTGGTTTCTTAAATTGCTTCCTTTGGGTTCATATTTTGGGTTTCACCTATTGTATTTATCACTGAAAATCATAGAACTTCTCAACTGATATTTCATAGGAGAAAGCTAGCAGTCTATATCCATTTTCCATAAGGAAAGCATGAGTTGTCTCGGGCCGAATTGACTAATCCATAAGGTGACTTATCCATATATGAGAGCTCCTAGTCCTGTGTGATTTACGAATGGTAGGCTTGGTTTAGGAATATCCAAAACAGTTGTAAAAATCGTCCATTTGCTTTTTTTCCCAATATTAAAACTTAAGGTAGTCATAAGGTAATCATGTTTATAATGTTCTTCAAGTTTTAGAAAATATGGTTGTTACTAACTTTCTTTAGTTTTTAAACTGCTTCCATATAGACATAAATGCTATACTACTTTGAGTGGTTCTTTAAACAGAAGCCTAGTAACACTTTTGGGTCATGCCTTGAAGATTTGACACCATAGAAGATGAATATTTGATAAAATTTCGTGTATTCTCATAGGTACCATGTCGGTTAGTCATAGCATATTGATATTGGTTAACAAAATGGACCTTAAGCCTAACTCATGAAGTGAAGGTCGTCTAAAATATATAACAACCTATTCTTTCGATTTTTGATGGAGGATTTTAAAGAGAGGAACAAAATGAAGTGGTAATCCTCAGATGGTCCATCCCAGTTGTTGGAACTAGACAGGAACTAGTATACCATGCTAAACTTGTGATTGCTTTGACTCCACTGTGAAATTTTTGGCTACTTATTAGCAGCAAGTGGTGCTTCTGAGGTCGTTAAAGACAATCCCATAGTATTGCATAGTTACATTAGCTATTGTATTTGCACTTCAATTTGTGCACGTGCATTTCAATAAATAGATCTTCTGTACAACTTGCAGTTTTTTTCTTTGAGAAAAGGTAACAGAAAATTGATTTCACTCTGCGACTGGTAATTTACATTTTGAAAGCCAGTTTTTGGTTATGAAAGTACAGTTCCTTAGGCTAGGTTGACTGATAGATACCAATCAGCCTCACAAACAGGAGGTCAATGTGCAGAGCCTTATTAAAATACTCTTTGCTGCCAAATAATGTGATAAATAAGGAAGCATCCAAGGGTGACCTAGTGATCAATGAAGTGGATTGAGAACCATGAGGTCTTAGGTTTCAAATCCCAGCATAGACTTAAAACACTATCTGATACCTGTTGTTGGTCAGACGAGGTAGGTATCCCGTGGAATTAATCGAGGTGCACAAAAGCATATCCCAGACACCACTGTCATTAAAAAAGTGATGATTAAGGATCTCTATTAAAACAAATCTGCAGGCTTCGCTCTGTGTTTGTGTTAAGAGTTTTATATGAGCGGTTTCACGCTGCTTTTAGAAGTCTCCACGTTTTGATTGTGAGATTTTCTTAGTAATAACCATTGATACAACGTGCAGGCCCATAGTTAAAGCTATGAAACCTCAAGTCTTTCCGGGAAGTTATCATTTTAGGATAAAGATAGTAGAAGTAAATTTGTTCTCTTGCATGTAGTGACAACTCATGTACTACTCTCTTTGTTTCAGTCTGTTTGTCTACTTTTCTTTTTAGTCCGTTTAAAAAAGAAGACCTCTTTTCTTTCTTGTCAACTTTTTACTTTCAAATTTTCACATGACGAGTTTAAGACCACACGATTAAAGTATTTTGGTATATTTGATACATCTTTTGCTTAAGACCATAAGACTCAAAAGTCATCTTTACTTTTTTAAACTCCATTTCAAGTCAAAACTAGACTTAACAAATTGAAACGGAGGGAGTACTTAAACTGCATCAATCAACAGCAATGCCTGCAGGAAACTGTCTCGAGGAGCTTAACTTCCTTATTAGTTTCTTTGATGCTTCAATAGATCATTGCAATGTAACATAAAACAAATTATTGATTTGTTTCCTCTAGGTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTAT</genome_strand>
        <mrna_strand>TGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294161" ref_strand="+" ref_description="SGN-E294161 [cLET-13-D6]">
      <seq>gggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatactaggtcacctcagccagctgatatagaggttgctattaagtgggcttgtagaaaaagagctcagaagatacctgttttcatccattgtgcatatggtcatggaaggagcgttgcagtcatgtgtgcactgttagtagctcttggtctagcagaagactggaaaaatgctgagaaattgatcaaagaaaaacggccatacatacgaatgaacgctctgcatcgcaaagctttagaggaatggtcgaaggatcgtctctcttccccaaaagttggagttagttccgtgattctgtcgagtgctaacgaccgttcctgatcaattgactgcagttgcaagaccaattaattatatagatgattggctgtttgtcttcacttttgattacacactatacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="110182" stop="113856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110482" g_stop="110707" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113251" g_stop="113556" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="532" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E294161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110482" e_stop="110707"/>
          <exon e_start="113251" e_stop="113556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATGGTATGATTGTGAACTTTAAAACTTTTTGTTTCAGATGAATGTATTTGTAGTCGATTATCGCATTATTTTGTTTTCGTTACTGATCTTTCTCCTGTTGGTTGTTGTTATTGCTCCAGTATCTGTATTCCCTTTTTCAAACTGTTTGTCATGCTTTATTTAAGTTGAGGGTCTATCCGGAACAACCTCTCTATCGTAGGGGTAAGATATGTGTATATTTAACCCTCACTAGACCTCACTTGTGGGATTACACTGGGTATGCCATTGTTGTCAAGTGGGGTCATGTTTTTCTATGTCCTTTAGATGTTACTACCTAAGTCCCAATTTAAGTGTGGTAGTTTGACTAGGCGCAGAAGTTGAATGAATAAAGGGAGAATTATGAATCTCGTGGTCTAAAATTAAAGATGTGTGTGGTTCTTTAAATCTTGTGGTTTTAAGTTTTCATGTCAGATGTTGGAATAGAGAAACTTACTACATATAGAAAGAGACACTGTTTTAGGACAGACCAAATTATAGCAAGACACTTAGATGGGGACGTAAGGAGTAAATGTTTCAGTAGTTGCTTGCTTGCCTGCCCTTCATTAGTGTGTGATTGTGGTAAAGTGGTTTCTTAAATTGCTTCCTTTGGGTTCATATTTTGGGTTTCACCTATTGTATTTATCACTGAAAATCATAGAACTTCTCAACTGATATTTCATAGGAGAAAGCTAGCAGTCTATATCCATTTTCCATAAGGAAAGCATGAGTTGTCTCGGGCCGAATTGACTAATCCATAAGGTGACTTATCCATATATGAGAGCTCCTAGTCCTGTGTGATTTACGAATGGTAGGCTTGGTTTAGGAATATCCAAAACAGTTGTAAAAATCGTCCATTTGCTTTTTTTCCCAATATTAAAACTTAAGGTAGTCATAAGGTAATCATGTTTATAATGTTCTTCAAGTTTTAGAAAATATGGTTGTTACTAACTTTCTTTAGTTTTTAAACTGCTTCCATATAGACATAAATGCTATACTACTTTGAGTGGTTCTTTAAACAGAAGCCTAGTAACACTTTTGGGTCATGCCTTGAAGATTTGACACCATAGAAGATGAATATTTGATAAAATTTCGTGTATTCTCATAGGTACCATGTCGGTTAGTCATAGCATATTGATATTGGTTAACAAAATGGACCTTAAGCCTAACTCATGAAGTGAAGGTCGTCTAAAATATATAACAACCTATTCTTTCGATTTTTGATGGAGGATTTTAAAGAGAGGAACAAAATGAAGTGGTAATCCTCAGATGGTCCATCCCAGTTGTTGGAACTAGACAGGAACTAGTATACCATGCTAAACTTGTGATTGCTTTGACTCCACTGTGAAATTTTTGGCTACTTATTAGCAGCAAGTGGTGCTTCTGAGGTCGTTAAAGACAATCCCATAGTATTGCATAGTTACATTAGCTATTGTATTTGCACTTCAATTTGTGCACGTGCATTTCAATAAATAGATCTTCTGTACAACTTGCAGTTTTTTTCTTTGAGAAAAGGTAACAGAAAATTGATTTCACTCTGCGACTGGTAATTTACATTTTGAAAGCCAGTTTTTGGTTATGAAAGTACAGTTCCTTAGGCTAGGTTGACTGATAGATACCAATCAGCCTCACAAACAGGAGGTCAATGTGCAGAGCCTTATTAAAATACTCTTTGCTGCCAAATAATGTGATAAATAAGGAAGCATCCAAGGGTGACCTAGTGATCAATGAAGTGGATTGAGAACCATGAGGTCTTAGGTTTCAAATCCCAGCATAGACTTAAAACACTATCTGATACCTGTTGTTGGTCAGACGAGGTAGGTATCCCGTGGAATTAATCGAGGTGCACAAAAGCATATCCCAGACACCACTGTCATTAAAAAAGTGATGATTAAGGATCTCTATTAAAACAAATCTGCAGGCTTCGCTCTGTGTTTGTGTTAAGAGTTTTATATGAGCGGTTTCACGCTGCTTTTAGAAGTCTCCACGTTTTGATTGTGAGATTTTCTTAGTAATAACCATTGATACAACGTGCAGGCCCATAGTTAAAGCTATGAAACCTCAAGTCTTTCCGGGAAGTTATCATTTTAGGATAAAGATAGTAGAAGTAAATTTGTTCTCTTGCATGTAGTGACAACTCATGTACTACTCTCTTTGTTTCAGTCTGTTTGTCTACTTTTCTTTTTAGTCCGTTTAAAAAAGAAGACCTCTTTTCTTTCTTGTCAACTTTTTACTTTCAAATTTTCACATGACGAGTTTAAGACCACACGATTAAAGTATTTTGGTATATTTGATACATCTTTTGCTTAAGACCATAAGACTCAAAAGTCATCTTTACTTTTTTAAACTCCATTTCAAGTCAAAACTAGACTTAACAAATTGAAACGGAGGGAGTACTTAAACTGCATCAATCAACAGCAATGCCTGCAGGAAACTGTCTCGAGGAGCTTAACTTCCTTATTAGTTTCTTTGATGCTTCAATAGATCATTGCAATGTAACATAAAACAAATTATTGATTTGTTTCCTCTAGGTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATG</genome_strand>
        <mrna_strand>GGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378326" ref_strand="+" ref_description="SGN-E378326 [TUS-46-D14]">
      <seq>gggggaaggccttgttcacttgataaattgccacccggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatactaggtcacctcagccagctgatatagaggttgctattaagtgggcttgtagaanaagagctcagaagatacctgttttcatccattgtgcatatggtcatggaaggagcgttgcagtcatgtgtgcactgttagtagctcttggtctagcagaagactggaaaatgctgagaaattgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="110182" stop="113638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110482" g_stop="110707" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113251" g_stop="113338" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="313" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E378326" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110482" e_stop="110707"/>
          <exon e_start="113251" e_stop="113338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATGGTATGATTGTGAACTTTAAAACTTTTTGTTTCAGATGAATGTATTTGTAGTCGATTATCGCATTATTTTGTTTTCGTTACTGATCTTTCTCCTGTTGGTTGTTGTTATTGCTCCAGTATCTGTATTCCCTTTTTCAAACTGTTTGTCATGCTTTATTTAAGTTGAGGGTCTATCCGGAACAACCTCTCTATCGTAGGGGTAAGATATGTGTATATTTAACCCTCACTAGACCTCACTTGTGGGATTACACTGGGTATGCCATTGTTGTCAAGTGGGGTCATGTTTTTCTATGTCCTTTAGATGTTACTACCTAAGTCCCAATTTAAGTGTGGTAGTTTGACTAGGCGCAGAAGTTGAATGAATAAAGGGAGAATTATGAATCTCGTGGTCTAAAATTAAAGATGTGTGTGGTTCTTTAAATCTTGTGGTTTTAAGTTTTCATGTCAGATGTTGGAATAGAGAAACTTACTACATATAGAAAGAGACACTGTTTTAGGACAGACCAAATTATAGCAAGACACTTAGATGGGGACGTAAGGAGTAAATGTTTCAGTAGTTGCTTGCTTGCCTGCCCTTCATTAGTGTGTGATTGTGGTAAAGTGGTTTCTTAAATTGCTTCCTTTGGGTTCATATTTTGGGTTTCACCTATTGTATTTATCACTGAAAATCATAGAACTTCTCAACTGATATTTCATAGGAGAAAGCTAGCAGTCTATATCCATTTTCCATAAGGAAAGCATGAGTTGTCTCGGGCCGAATTGACTAATCCATAAGGTGACTTATCCATATATGAGAGCTCCTAGTCCTGTGTGATTTACGAATGGTAGGCTTGGTTTAGGAATATCCAAAACAGTTGTAAAAATCGTCCATTTGCTTTTTTTCCCAATATTAAAACTTAAGGTAGTCATAAGGTAATCATGTTTATAATGTTCTTCAAGTTTTAGAAAATATGGTTGTTACTAACTTTCTTTAGTTTTTAAACTGCTTCCATATAGACATAAATGCTATACTACTTTGAGTGGTTCTTTAAACAGAAGCCTAGTAACACTTTTGGGTCATGCCTTGAAGATTTGACACCATAGAAGATGAATATTTGATAAAATTTCGTGTATTCTCATAGGTACCATGTCGGTTAGTCATAGCATATTGATATTGGTTAACAAAATGGACCTTAAGCCTAACTCATGAAGTGAAGGTCGTCTAAAATATATAACAACCTATTCTTTCGATTTTTGATGGAGGATTTTAAAGAGAGGAACAAAATGAAGTGGTAATCCTCAGATGGTCCATCCCAGTTGTTGGAACTAGACAGGAACTAGTATACCATGCTAAACTTGTGATTGCTTTGACTCCACTGTGAAATTTTTGGCTACTTATTAGCAGCAAGTGGTGCTTCTGAGGTCGTTAAAGACAATCCCATAGTATTGCATAGTTACATTAGCTATTGTATTTGCACTTCAATTTGTGCACGTGCATTTCAATAAATAGATCTTCTGTACAACTTGCAGTTTTTTTCTTTGAGAAAAGGTAACAGAAAATTGATTTCACTCTGCGACTGGTAATTTACATTTTGAAAGCCAGTTTTTGGTTATGAAAGTACAGTTCCTTAGGCTAGGTTGACTGATAGATACCAATCAGCCTCACAAACAGGAGGTCAATGTGCAGAGCCTTATTAAAATACTCTTTGCTGCCAAATAATGTGATAAATAAGGAAGCATCCAAGGGTGACCTAGTGATCAATGAAGTGGATTGAGAACCATGAGGTCTTAGGTTTCAAATCCCAGCATAGACTTAAAACACTATCTGATACCTGTTGTTGGTCAGACGAGGTAGGTATCCCGTGGAATTAATCGAGGTGCACAAAAGCATATCCCAGACACCACTGTCATTAAAAAAGTGATGATTAAGGATCTCTATTAAAACAAATCTGCAGGCTTCGCTCTGTGTTTGTGTTAAGAGTTTTATATGAGCGGTTTCACGCTGCTTTTAGAAGTCTCCACGTTTTGATTGTGAGATTTTCTTAGTAATAACCATTGATACAACGTGCAGGCCCATAGTTAAAGCTATGAAACCTCAAGTCTTTCCGGGAAGTTATCATTTTAGGATAAAGATAGTAGAAGTAAATTTGTTCTCTTGCATGTAGTGACAACTCATGTACTACTCTCTTTGTTTCAGTCTGTTTGTCTACTTTTCTTTTTAGTCCGTTTAAAAAAGAAGACCTCTTTTCTTTCTTGTCAACTTTTTACTTTCAAATTTTCACATGACGAGTTTAAGACCACACGATTAAAGTATTTTGGTATATTTGATACATCTTTTGCTTAAGACCATAAGACTCAAAAGTCATCTTTACTTTTTTAAACTCCATTTCAAGTCAAAACTAGACTTAACAAATTGAAACGGAGGGAGTACTTAAACTGCATCAATCAACAGCAATGCCTGCAGGAAACTGTCTCGAGGAGCTTAACTTCCTTATTAGTTTCTTTGATGCTTCAATAGATCATTGCAATGTAACATAAAACAAATTATTGATTTGTTTCCTCTAGGTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAA</genome_strand>
        <mrna_strand>GGGGGAAGGCCTTGTTCACTTGATAAATTGCCACCCGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAANAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGG-AAAATGCTGAGAAATTGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368557" ref_strand="+" ref_description="SGN-E368557 [TUS-23-B20](-)">
      <seq>atgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatactaggtcacctcaaccagctgatatagaggttgctattaagtgggcttgtagaaaaagagctcagaagatacctgttttcatccattgtgcatatggtcatggaaggagcgttgcagtcatgtgtgcactgttagtagctcttggtctagcagaagactggaaaaatgctgagaaattgatcaaagaaaaacggccatacatacgaatgaacgctctgcatcgcaaagctttagaggaatggtcgaaggatcgtctctcttccccaaaagttggagttagttccgtgattctgtcgagtgctaacgaccgttcctgatcaattgactgcagttgcaaaaccaattaattatatagatgattggctgtttgtcttcacttttgattacacactatacttaatgattgagatttttgcttctttttatcaagtagaagcgtactctcttgatatatttcttgtaatagaaaatgtttgattgccaggattgtgtttgacataaaaattcttaaaactatttttgaatcctaagcatctagtgaaactgtatttattgtgtatcaagattctgttatattcttaaaaagcagctaagtataaatacattctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="110260" stop="114067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110560" g_stop="110707" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113251" g_stop="113773" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="671" r_length="523" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E368557" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110560" e_stop="110707"/>
          <exon e_start="113251" e_stop="113773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATGGTATGATTGTGAACTTTAAAACTTTTTGTTTCAGATGAATGTATTTGTAGTCGATTATCGCATTATTTTGTTTTCGTTACTGATCTTTCTCCTGTTGGTTGTTGTTATTGCTCCAGTATCTGTATTCCCTTTTTCAAACTGTTTGTCATGCTTTATTTAAGTTGAGGGTCTATCCGGAACAACCTCTCTATCGTAGGGGTAAGATATGTGTATATTTAACCCTCACTAGACCTCACTTGTGGGATTACACTGGGTATGCCATTGTTGTCAAGTGGGGTCATGTTTTTCTATGTCCTTTAGATGTTACTACCTAAGTCCCAATTTAAGTGTGGTAGTTTGACTAGGCGCAGAAGTTGAATGAATAAAGGGAGAATTATGAATCTCGTGGTCTAAAATTAAAGATGTGTGTGGTTCTTTAAATCTTGTGGTTTTAAGTTTTCATGTCAGATGTTGGAATAGAGAAACTTACTACATATAGAAAGAGACACTGTTTTAGGACAGACCAAATTATAGCAAGACACTTAGATGGGGACGTAAGGAGTAAATGTTTCAGTAGTTGCTTGCTTGCCTGCCCTTCATTAGTGTGTGATTGTGGTAAAGTGGTTTCTTAAATTGCTTCCTTTGGGTTCATATTTTGGGTTTCACCTATTGTATTTATCACTGAAAATCATAGAACTTCTCAACTGATATTTCATAGGAGAAAGCTAGCAGTCTATATCCATTTTCCATAAGGAAAGCATGAGTTGTCTCGGGCCGAATTGACTAATCCATAAGGTGACTTATCCATATATGAGAGCTCCTAGTCCTGTGTGATTTACGAATGGTAGGCTTGGTTTAGGAATATCCAAAACAGTTGTAAAAATCGTCCATTTGCTTTTTTTCCCAATATTAAAACTTAAGGTAGTCATAAGGTAATCATGTTTATAATGTTCTTCAAGTTTTAGAAAATATGGTTGTTACTAACTTTCTTTAGTTTTTAAACTGCTTCCATATAGACATAAATGCTATACTACTTTGAGTGGTTCTTTAAACAGAAGCCTAGTAACACTTTTGGGTCATGCCTTGAAGATTTGACACCATAGAAGATGAATATTTGATAAAATTTCGTGTATTCTCATAGGTACCATGTCGGTTAGTCATAGCATATTGATATTGGTTAACAAAATGGACCTTAAGCCTAACTCATGAAGTGAAGGTCGTCTAAAATATATAACAACCTATTCTTTCGATTTTTGATGGAGGATTTTAAAGAGAGGAACAAAATGAAGTGGTAATCCTCAGATGGTCCATCCCAGTTGTTGGAACTAGACAGGAACTAGTATACCATGCTAAACTTGTGATTGCTTTGACTCCACTGTGAAATTTTTGGCTACTTATTAGCAGCAAGTGGTGCTTCTGAGGTCGTTAAAGACAATCCCATAGTATTGCATAGTTACATTAGCTATTGTATTTGCACTTCAATTTGTGCACGTGCATTTCAATAAATAGATCTTCTGTACAACTTGCAGTTTTTTTCTTTGAGAAAAGGTAACAGAAAATTGATTTCACTCTGCGACTGGTAATTTACATTTTGAAAGCCAGTTTTTGGTTATGAAAGTACAGTTCCTTAGGCTAGGTTGACTGATAGATACCAATCAGCCTCACAAACAGGAGGTCAATGTGCAGAGCCTTATTAAAATACTCTTTGCTGCCAAATAATGTGATAAATAAGGAAGCATCCAAGGGTGACCTAGTGATCAATGAAGTGGATTGAGAACCATGAGGTCTTAGGTTTCAAATCCCAGCATAGACTTAAAACACTATCTGATACCTGTTGTTGGTCAGACGAGGTAGGTATCCCGTGGAATTAATCGAGGTGCACAAAAGCATATCCCAGACACCACTGTCATTAAAAAAGTGATGATTAAGGATCTCTATTAAAACAAATCTGCAGGCTTCGCTCTGTGTTTGTGTTAAGAGTTTTATATGAGCGGTTTCACGCTGCTTTTAGAAGTCTCCACGTTTTGATTGTGAGATTTTCTTAGTAATAACCATTGATACAACGTGCAGGCCCATAGTTAAAGCTATGAAACCTCAAGTCTTTCCGGGAAGTTATCATTTTAGGATAAAGATAGTAGAAGTAAATTTGTTCTCTTGCATGTAGTGACAACTCATGTACTACTCTCTTTGTTTCAGTCTGTTTGTCTACTTTTCTTTTTAGTCCGTTTAAAAAAGAAGACCTCTTTTCTTTCTTGTCAACTTTTTACTTTCAAATTTTCACATGACGAGTTTAAGACCACACGATTAAAGTATTTTGGTATATTTGATACATCTTTTGCTTAAGACCATAAGACTCAAAAGTCATCTTTACTTTTTTAAACTCCATTTCAAGTCAAAACTAGACTTAACAAATTGAAACGGAGGGAGTACTTAAACTGCATCAATCAACAGCAATGCCTGCAGGAAACTGTCTCGAGGAGCTTAACTTCCTTATTAGTTTCTTTGATGCTTCAATAGATCATTGCAATGTAACATAAAACAAATTATTGATTTGTTTCCTCTAGGTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGTATTATTCCATTCTTTACATTTGTG</genome_strand>
        <mrna_strand>ATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAACCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAAACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTAATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGTATAAATACATTCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288945" ref_strand="+" ref_description="SGN-E288945 [cLES-17-G22]">
      <seq>gaacgctctgcatcgcaaagctttagaggaatggtcgaaggatcgtctctcttccccaaaagttggagttagttccgtgattctgtcgagtgctaacgaccgttcctgatcaattgactgcagttgcaagaccaattaattatatagatgattggctgtttgtcttcacttttgattacacactatacttgatgattgagatttttgcttctttttatcaagtagaagcgtactctcttgatatatttcttgtaatagaaaatgtttgattgccaggattgtgtttgacataaaaattcttaaaactatttttgaatcctaagcatctagtgaaactgtatttattgtgtatcaagattctgttatattcttaaaaagcagctaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="113063" stop="114050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113363" g_stop="113749" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="400"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E288945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113363" e_stop="113749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGT</genome_strand>
        <mrna_strand>GAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422799" ref_strand="+" ref_description="SGN-E422799 [STM-41-C11]">
      <seq>aactgataatggataccatcttctccctctctccatctccgccacccttctccgccgccattctcaccggaaaccaccactccgccaccgtcttctcctccctcagaaaatcctcctccaactcacttgaaaaaatccctcctccatacactcctatatttaccaaaaaacccctcaaacatctacttaattccaccccaccacctagtctccataacaagctatggctatccaagaaactgtcaccacccccagccccacccccaacccctccaccactattagcaaaaaatgaggaaatgcggaaaagagttgaaaataaggaaaaaggaagaatctttgtggggaatttgccactatggattaaagagaaggaggttactgagttttttagacaatttggggctataaagaatgtgattttgataaagggtaatagtgggaatgaaagaatatgggtttttggggtttttgaaatatgaggatccaattgcagagaaagcagctatgaaggcagtgggagtttgatggtggtgaatttcatggaagggtattgactgtgaaattggatgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="116100" stop="117286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116400" g_stop="116986" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E422799" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116400" e_stop="116986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGATAATGGATACCATTTTCTCCCTCTCTCCATCTCCGCAACCCTTCTCCGCCGCTATTCTCACCGGGAACCACCACTCCACCACCGTCTTTTCCTCCCTCAGAAAATCCTCCTCCAGCTCCCCTGAAAAAATCCCTCCTCCATACACTCCTAAATTTACCAAAAAACCCCTCAAACATCTACTTAATTCCACCCCACCTCCTAGTCTCCATAACAAGCTAAGGCTATCCAAGAAGCTGTCACCACCCCCACCCCCACCCCCTACCCCGCCCCCAACTCCTCCACCATTTGTAGGAAAAAATGAGGAAATGCATAAAAGAGTTGAAAGTAAGGAAAAAGGAAGAATCTTTGTGGGGAATTTACCATTATGGATTAAAGAGAAGGAGGTTGCTGAGTTCTTTAGACAATTTGGGGCTATAAAGAATGTGATTTTGATAAAGGGTAGTAGTGGGAATGAAAAGAATATGGG-TTTT-GGGTTTTTGAAATATGAGGGTCCAAATGCTGAGAAAGCAGCTATGAAGGCAGT-GGATTTTGATGGTGTTGAATTTCATGGAAGGGTGTTGACTGTGAAATTGGATGATGGG</genome_strand>
        <mrna_strand>AACTGATAATGGATACCATCTTCTCCCTCTCTCCATCTCCGCCACCCTTCTCCGCCGCCATTCTCACCGGAAACCACCACTCCGCCACCGTCTTCTCCTCCCTCAGAAAATCCTCCTCCAACTCACTTGAAAAAATCCCTCCTCCATACACTCCTATATTTACCAAAAAACCCCTCAAACATCTACTTAATTCCACCCCACCACCTAGTCTCCATAACAAGCTATGGCTATCCAAGAAACTGTCACCACCCCCAGCCCCACCCCC-A------ACCC--CTCCACCA-C-TAT-TAGCAAAAAATGAGGAAATGCGGAAAAGAGTTGAAAATAAGGAAAAAGGAAGAATCTTTGTGGGGAATTTGCCACTATGGATTAAAGAGAAGGAGGTTACTGAGTTTTTTAGACAATTTGGGGCTATAAAGAATGTGATTTTGATAAAGGGTAATAGTGGGAATG-AAAGAATATGGGTTTTTGGGGTTTTTGAAATATGAGGATCCAATTGCAGAGAAAGCAGCTATGAAGGCAGTGGGAGTTTGATGGTGGTGAATTTCATGGAAGGGTATTGACTGTGAAATTGGATGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449097" ref_strand="+" ref_description="SGN-E449097 [cSTS-5-I4]">
      <seq>aactgataatggataccatcttctccctctctccatctccgccacccttctccgccgccattctcaccggaaaccaccactccgccaccgtcttctcctccctcagaaaatcctcctccaactcacttgaaaaaatccctcctccatacactcctatatttaccaaaaaacccctcaaacatctacttaattccaccccaccacctagtctccataacaagctatggctatccaagaaactgtcaccacccccagccccacccccaacccctccaccactattagcaaaaaatgaggaaatgcggaaaagagttgaaaataaggaaaaaggaagaatctttgtggggaatttgccactatggattaaagagaaggaggttactgagttttttagacaatttggggctataaagaatgtgattttgataaagggtaatagtgggaatgaaaagaatatgggttttgggtttttgaaatatgaggatccaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="116100" stop="117204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116400" g_stop="116905" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E449097" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116400" e_stop="116905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGATAATGGATACCATTTTCTCCCTCTCTCCATCTCCGCAACCCTTCTCCGCCGCTATTCTCACCGGGAACCACCACTCCACCACCGTCTTTTCCTCCCTCAGAAAATCCTCCTCCAGCTCCCCTGAAAAAATCCCTCCTCCATACACTCCTAAATTTACCAAAAAACCCCTCAAACATCTACTTAATTCCACCCCACCTCCTAGTCTCCATAACAAGCTAAGGCTATCCAAGAAGCTGTCACCACCCCCACCCCCACCCCCTACCCCGCCCCCAACTCCTCCACCATTTGTAGGAAAAAATGAGGAAATGCATAAAAGAGTTGAAAGTAAGGAAAAAGGAAGAATCTTTGTGGGGAATTTACCATTATGGATTAAAGAGAAGGAGGTTGCTGAGTTCTTTAGACAATTTGGGGCTATAAAGAATGTGATTTTGATAAAGGGTAGTAGTGGGAATGAAAAGAATATGGGTTTTGGGTTTTTGAAATATGAGGGTCCAAATGCT</genome_strand>
        <mrna_strand>AACTGATAATGGATACCATCTTCTCCCTCTCTCCATCTCCGCCACCCTTCTCCGCCGCCATTCTCACCGGAAACCACCACTCCGCCACCGTCTTCTCCTCCCTCAGAAAATCCTCCTCCAACTCACTTGAAAAAATCCCTCCTCCATACACTCCTATATTTACCAAAAAACCCCTCAAACATCTACTTAATTCCACCCCACCACCTAGTCTCCATAACAAGCTATGGCTATCCAAGAAACTGTCACCACCCCCAGCCCCACCCCC-A------ACCC--CTCCACCA-C-TAT-TAGCAAAAAATGAGGAAATGCGGAAAAGAGTTGAAAATAAGGAAAAAGGAAGAATCTTTGTGGGGAATTTGCCACTATGGATTAAAGAGAAGGAGGTTACTGAGTTTTTTAGACAATTTGGGGCTATAAAGAATGTGATTTTGATAAAGGGTAATAGTGGGAATGAAAAGAATATGGGTTTTGGGTTTTTGAAATATGAGGATCCAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360533" ref_strand="+" ref_description="SGN-E360533 [cLPP-8-J9]">
      <seq>tttttgaaatatgatggtccaaatgctgagaaagcagctatgaaggcagtggattttgatggtgttgaatttcatggaagggtgttgactgtgaaattggatgatgggaggagattgaaagagaaaatagaggagaggaacacgtggcatgaggcgaaggaggggcccgggagagatttcaagaaggttctggcaatacagccggagaattggcaggcggttgttcgggcttttgagagaatcaagaaggtgttatgcttactggaatactgaagtaatctgcttgcagtgctgtagtcccttaaaatccatccaggaaagaatttggcttaatggtgaactactatgcaaggaggggagacatgcatcgtgcacgtgaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="116579" stop="118695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116879" g_stop="117186" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117187" i_stop="118320" i_length="1134">
            <donor d_prob="0.145" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118321" g_stop="118395" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="383" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E360533" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116879" e_stop="117186"/>
          <exon e_start="118321" e_stop="118395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAAATATGAGGGTCCAAATGCTGAGAAAGCAGCTATGAAGGCAGTGGATTTTGATGGTGTTGAATTTCATGGAAGGGTGTTGACTGTGAAATTGGATGATGGGAGGAGATTGAAAGAGAAAATAGAGGAGAGGAACACGTGGCATGAGGCGAAGGAGGGGCCCAGGAGAGATTTCAAGAAGGTTCTGGAAATACAGCCGGAGAATTGGCAGGCGGTTGTTCGGGCTTTTGAGAGAATCAAGAAGGTGTTATGCTTACTGGAATACTGAAGTAATCTGCTTGCAGTGCTGTAGTCCCTTAAAATGTATGATTTGAAGTGTTTAGATACTTAAGTTAATACATTTGTTACTTATTACAAGCAAAAACATGATAAGGCTTTAGAATTGGATGAATTAAGTTGGTTCATTATGTGCTGTTAGCTTAGTTAATGTGGCAATACTTTTGGTGCTAAATGGTGAGAGCAAATATTTATGAGCTAATTGTTTTGGTAATGATAAAGTGATGTCTAGTACTAATCAACTACCAATGTTTCCTTTTTCTGATATTCCTCTATCTTGTTCATTGTGGCTCTAGAGCAAGAGAGGTTGGTAACTGAAAAAAGCAACATATCCACATGACCCTAGACAGGAAGGTATGGAGGTCGAGGATTAGAATAAAAGGTTAGTAGGTAGCCTAGTGTTGCCGCACTTTATGTGGGAGGGTAGGGGGCTAGCCACTTCCTTTTCCTCTTCTCATTATTGGTAGTAGTATTTAGTAATTGTCTAGTCTTCTACTCTTCTATATGTGGTACTACTGATTGCTTTATTTGCTTTGTATTGTGCTATTTGATTGTTATATTTTTCTTGCAATCCTACTTCGATAACAATCTAATATTCCTTTTGAGCCGAGGGTCTGTTGGAAACGACCTCTCTATCCCACAAACATAGGGGTAAGGTCTGCGTGCATCTACCCTCCCTGGACCGCACTTGTGCGATTACACTGTGTATGTTGTTGTAATAATTCTTAATTAATTAATCCCTTGTCCTTAATTGGTCATCCCCTTCTCCGTTAACCCAAGAAACGGAGATCTTCATTCATTGTTTACTGCTAGTTTTATAAGATTATGTGTCATATATGTAAGGATAAGATGAAGTGCTAGCGAAGTTATATTGTTCCTTGGATTGTAACTAGCAGCGACAAATGGTTTTGATAATTTTCAAGTCCTAGAAGACTTCTATTGGCTTGTGGATATGCTGTACTTGCACCTAAATACATTTACATTCTACTATATACCGCTTATCATTACTACTATCTCTGATATGCCTTTCTGTTGAAGAAAAGTTAATATTTATTTATGGTATACCTTACTTTCATTTTACTCTCATGTCAAGTTGTGTATTAGGCTTTTAAGAAACTCTTGAACATATATTTCGGATAAAATAATTCCTTCTATTTGTAGCCATCCAGGAAAGAATTTGGCTTGATGGTGAACTACTATGCAAGGAGGGGTGACATGCATCGTGCACGTGAAACC</genome_strand>
        <mrna_strand>TTTTTGAAATATGATGGTCCAAATGCTGAGAAAGCAGCTATGAAGGCAGTGGATTTTGATGGTGTTGAATTTCATGGAAGGGTGTTGACTGTGAAATTGGATGATGGGAGGAGATTGAAAGAGAAAATAGAGGAGAGGAACACGTGGCATGAGGCGAAGGAGGGGCCCGGGAGAGATTTCAAGAAGGTTCTGGCAATACAGCCGGAGAATTGGCAGGCGGTTGTTCGGGCTTTTGAGAGAATCAAGAAGGTGTTATGCTTACTGGAATACTGAAGTAATCTGCTTGCAGTGCTGTAGTCCCTTAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCCAGGAAAGAATTTGGCTTAATGGTGAACTACTATGCAAGGAGGGGAGACATGCATCGTGCACGTGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739009" ref_strand="+" ref_description="SGN-E739009 [LC15DB12]">
      <seq>ccctttaagaaagttaaacatatctctcttgaacaatttatgattattaataagcttaatgtatgagcacatattttcttataacatcacatgcaagtcaaaaccctccagtatacgggcaaatatttttgttaacctcagtaattgtcacattttttcttatatataaagtcagatgcaagtgatgtttctccggtatacagacaagtattttttgttaacctcaataatctaaagtaacatgttggattttcatattcaaagttctaggcattgaaatctctatcatcattatcaaaaagtcatctgatattcatcattcttagatttgagttgtttgcacctaaactttcatatagcatttcaatgaccagcagactctaaagtgatttttaatttaccttatcaaatatacttaatggctaagtctaataacttaacagccaactggtactgaataattgggtaatcaaccacatttaggctttaacctttgctcagtgccttacactgggggagtatctgtactgttcaattcagttgtttcttttctttgaagtgtagccccctgtggcatctaaacaacttagtcctactgcatgctagaaaataagaaacctgaaaaaaaaaactgaatttccatgattggtaagtgaagatgaataatgtctttaatggcgaaaaggaattgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-gh6L8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="118972" stop="120257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119265" g_stop="119957" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-E739009" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119265" e_stop="119957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTAGAAAGTTAAACATATCTCTCTTGAACAATTTATGATTATTAATAAGCTTAATGTATGAGCACATATTTTCTTATAACATCACATGCAAGTCAAAACCCTCCAGTATACGGGCAAATATTTTTGTTAACCTCAGTAATTGTCACATTTTTTCTTATATATAAAGTCAGATGCAAGTGATGTTTCTCCGGTATACAGACAAGTATTTTTTGTTAACCTCAATAATCTAAAGTAACATGTTGGATTTTCATATTCAAAGTTCTAGGCATTGAAATCTCTATCATCATTATCAAAAAGTCATCTGATATTCATCATTCTTAGATTTGAGTTGTTTGCACCTAAACTTTCATATAGCATTTCAATGACCAGCAGACTCTAAAGTGATTTTTAATTTACCTTATCAAATATACTTAATGGCTAAGTCTAATAACTTAACAGCCAACTGGTACTGAATAATTGGGTAATCAACCACATTTAGGCTTTAACCTTTGCTCAGTGCCTTACACTGGGGGAGTATCTGTACTGTTCAATTCAGTTGTTTCTTTTCTTTGAAGTGTAGCCCCCTATGGCATCTAAACAACTTAGTCCTACTGCATGCTAGAAAATAAGAAACCTGAAAAAAAAAACTGAATTTCCATGATTGGTAAGTGTAGATG-ATAATGTCTTTAAT-GCGGAAAGGAATTGTCTT</genome_strand>
        <mrna_strand>CCCTTTAAGAAAGTTAAACATATCTCTCTTGAACAATTTATGATTATTAATAAGCTTAATGTATGAGCACATATTTTCTTATAACATCACATGCAAGTCAAAACCCTCCAGTATACGGGCAAATATTTTTGTTAACCTCAGTAATTGTCACATTTTTTCTTATATATAAAGTCAGATGCAAGTGATGTTTCTCCGGTATACAGACAAGTATTTTTTGTTAACCTCAATAATCTAAAGTAACATGTTGGATTTTCATATTCAAAGTTCTAGGCATTGAAATCTCTATCATCATTATCAAAAAGTCATCTGATATTCATCATTCTTAGATTTGAGTTGTTTGCACCTAAACTTTCATATAGCATTTCAATGACCAGCAGACTCTAAAGTGATTTTTAATTTACCTTATCAAATATACTTAATGGCTAAGTCTAATAACTTAACAGCCAACTGGTACTGAATAATTGGGTAATCAACCACATTTAGGCTTTAACCTTTGCTCAGTGCCTTACACTGGGGGAGTATCTGTACTGTTCAATTCAGTTGTTTCTTTTCTTTGAAGTGTAGCCCCCTGTGGCATCTAAACAACTTAGTCCTACTGCATGCTAGAAAATAAGAAACCTGAAAAAAAAAACTGAATTTCCATGATTGGTAAGTGAAGATGAATAATGTCTTTAATGGCGAAAAGGAATTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>141</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="438" PGL_stop="2294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="438" e_stop="755"/>
            <exon e_start="1332" e_stop="1442"/>
            <exon e_start="1579" e_stop="2294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.896" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="438" e_stop="755" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.896">
            <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1332" e_stop="1442" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1579" e_stop="2294" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="438" stop="755"/>
              <exon start="1332" stop="1442"/>
              <exon start="1579" stop="2039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="487" stop="755"/>
              <exon start="1332" stop="1442"/>
              <exon start="1579" stop="1933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="487" stop="755"/>
              <exon start="1332" stop="1442"/>
              <exon start="1579" stop="1870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="488" stop="755"/>
              <exon start="1332" stop="1442"/>
              <exon start="1579" stop="1752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="610" stop="755"/>
              <exon start="1332" stop="1442"/>
              <exon start="1579" stop="1681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="624" stop="755"/>
              <exon start="1332" stop="1442"/>
              <exon start="1579" stop="1826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1343" stop="1442"/>
              <exon start="1579" stop="2246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1409" stop="1442"/>
              <exon start="1579" stop="2276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1748" stop="2294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA : TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG : GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCAGTTAATTACACATACTTG</gDNA_template>
            <first_frame> L  H  S  M  P  *  K  A  V  L  F  Q  I  L  C  Q  R  T  *  I  H  V  M  I  Q  W  P  C  V  V  V  L  L  A  R  M  V  S  L  L  G  S  M  V  L  P  G  T  L  C  T  A  T  N  *  G  S  L  L  *  S  K  M  T  F  P  G  K  E  V  I  W  S  R  L  L  E  I  L  V  R  Y  Q  R  I  R  P  S  F  R  I  S  E  K  T  R  I  S  M  *  T  R  L  P  I  K  :  S  P  D  Q  K  F  R  L  H  L  G  S  Q  C  P  Q  G  T  C  L  T  V  L  P  H  L  M  I  *  E  E  C  L  V  L  F  L  :  V  V  V  *  *  I  V  H  Q  V  C  F  T  H  H  Q  P  E  A  L  A  V  L  V  I  S  I  L  L  T  L  P  H  Q  S  L  E  M  A  N  Q  Q  M  V  L  I  Y  Q  P  W  R  S  G  Q  L  V  C  H  R  G  E  G  L  K  T  K  Q  E  S  G  I  L  C  N  K  N  L  *  I  K  G  N  S  L  N  E  L  L  L  K  H  H  P  C  I  S  H  E  G  I  L  A  M  A  E  M  S  I  L  A  W  M  I  Y  M  A  S  H  Q  G  W  W  I  N  T  K  V  S  I  H  L  P  I  H  N  F  H  S  R  S  L  R  Q  M  T  T  S  L  M  A  S  S  T  I  A  W  T  I  S  I  V  V  M  K  W  T  T  *  H  N  T  S  Q  M  I  H  *  V  S  K  N  S  M  L  D  M  E  M  *  C  S  R  R  P  G  L  A  M  Y  T  P  E  Y  L  G  C  N  T  Q  D  T  L  L  K  *  N  C  P  Q  L  F  C  V  V  C  R  K  L  *  I  C  Y  Q  L  I  T  H  T   </first_frame>
            <second_frame>  F  I  Q  C  H  R  K  Q  C  Y  F  K  Y  Y  V  K  G  L  E  F  M  *  *  F  N  G  L  A  S  *  F  C  W  L  V  W  *  V  C  W  E  A  W  C  F  L  E  L  F  A  Q  R  P  I  R  V  L  F  C  E  A  R  *  L  F  L  A  R  R  *  F  G  V  V  F  *  K  Y  W  S  D  I  K  E  F  V  H  P  S  G  F  R  R  K  Q  G  S  V  C  E  Q  G  S  L  S  N :   H  Q  T  K  S  F  G  S  T  W  V  L  N  A  P  K  G  P  A  S  R  F  C  L  I  *  *  Y  R  R  N  A  S  F  S  F  W :   *  S  F  S  K  *  F  I  K  F  A  S  H  T  I  N  R  K  H  *  Q  C  W  *  Y  R  F  C  *  P  C  H  I  S  L  W  K  W  Q  T  N  K  W  F  *  Y  I  S  L  G  D  R  V  S  L  C  A  T  E  E  R  V  *  R  R  S  K  N  L  A  S  Y  A  T  K  T  F  R  S  R  E  I  L  S  T  N  C  F  S  N  T  I  H  A  S  V  T  K  A  S  *  P  W  R  R  *  V  S  W  P  G  *  Y  I  W  L  L  I  K  D  G  G  S  T  P  K  F  Q  F  I  F  L  F  T  I  S  T  A  E  A  C  D  K  *  P  H  L  *  W  L  P  A  Q  *  L  G  R  Y  P  S  W  *  *  S  G  Q  H  D  T  T  P  V  K  *  F  I  R  F  Q  K  I  L  C  W  I  W  R  C  D  V  P  D  A  P  V  W  R  C  I  H  Q  S  I  W  D  V  T  H  K  T  L  Y  *  N  E  I  V  P  N  Y  F  V  L  F  A  E  N  Y  K  Y  V  T  S  *  L  H  I  L  </second_frame>
            <third_frame>   S  F  N  A  I  E  S  S  V  I  S  N  I  M  S  K  D  L  N  S  C  D  D  S  M  A  L  R  R  S  F  V  G  S  Y  G  E  S  V  G  K  H  G  A  S  W  N  S  L  H  S  D  Q  L  G  F  S  F  V  K  Q  D  D  F  S  W  Q  G  G  D  L  E  S  S  F  R  N  I  G  Q  I  S  K  N  S  S  I  L  Q  D  F  G  E  N  K  D  Q  Y  V  N  K  A  P  Y  Q   : I  T  R  P  K  V  S  A  P  P  G  F  S  M  P  P  R  D  L  P  H  G  F  A  S  S  D  D  I  G  G  M  P  R  S  L  S   : G  S  R  L  V  N  S  S  S  S  L  L  H  T  P  S  T  G  S  I  S  S  A  G  D  I  D  F  V  D  P  A  T  S  V  F  G  N  G  K  P  T  N  G  F  D  I  S  A  L  E  I  G  S  A  C  V  P  Q  R  R  G  F  E  D  E  A  R  I  W  H  L  M  Q  Q  K  P  L  D  Q  G  K  F  S  Q  R  I  A  S  Q  T  P  S  M  H  Q  S  R  R  H  P  S  H  G  G  D  E  Y  L  G  L  D  D  I  Y  G  F  S  S  R  M  V  D  Q  H  Q  S  F  N  S  S  S  Y  S  Q  F  P  Q  Q  K  L  A  T  N  D  H  I  F  N  G  F  Q  H  N  S  L  D  D  I  H  R  G  N  E  V  D  N  M  T  Q  H  Q  S  N  D  S  L  G  F  K  K  F  Y  A  G  Y  G  D  V  M  F  Q  T  P  R  S  G  D  V  Y  T  R  V  F  G  M  *  H  T  R  H  F  T  K  M  K  L  S  P  T  I  L  C  C  L  Q  K  I  I  N  M  L  P  V  N  Y  T  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="440" stop="755"/>
                    <exon start="1332" stop="1442"/>
                    <exon start="1579" stop="2198"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFNAIESSVISNIMSKDLNSCDDSMALRRSFVGSYGESVGKHGASWNSLHSDQLGFSFVKQDDFSWQGGDLESSFRNIGQISKNSSILQDFGENKDQYVNKAPYQITRPKVSAPPGFSMPPRDLPHGFASSDDIGGMPRSLSGSRLVNSSSSLLHTPSTGSISSAGDIDFVDPATSVFGNGKPTNGFDISALEIGSACVPQRRGFEDEARIWHLMQQKPLDQGKFSQRIASQTPSMHQSRRHPSHGGDEYLGLDDIYGFSSRMVDQHQSFNSSSYSQFPQQKLATNDHIFNGFQHNSLDDIHRGNEVDNMTQHQSNDSLGFKKFYAGYGDVMFQTPRSGDVYTRVFGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3296" PGL_stop="7809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3296" e_stop="3452"/>
            <exon e_start="3528" e_stop="3773"/>
            <exon e_start="5754" e_stop="5883"/>
            <exon e_start="6175" e_stop="6180"/>
            <exon e_start="6279" e_stop="6362"/>
            <exon e_start="6474" e_stop="6538"/>
            <exon e_start="7461" e_stop="7809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.854"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.936"/>
          <exon-intron don_prob="0.964" acc_prob="0.987" e_score="0.969"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.921" e_score="0.929"/>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="0.969"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.854">
            <gDNA_exon_boundary e_start="3296" e_stop="3452" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3453" i_stop="3527" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="3528" e_stop="3773" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3774" i_stop="5753" i_length="1980"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="5754" e_stop="5883" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5884" i_stop="6174" i_length="291"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6175" e_stop="6180" e_length="6"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6181" i_stop="6278" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.929">
            <gDNA_exon_boundary e_start="6279" e_stop="6362" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.921">
            <gDNA_intron_boundary i_start="6363" i_stop="6473" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="6474" e_stop="6538" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="6539" i_stop="7460" i_length="922"/>
          </intron>
          <exon e_serial="7" e_score="0.917">
            <gDNA_exon_boundary e_start="7461" e_stop="7809" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3296" stop="3452"/>
              <exon start="3528" stop="3773"/>
              <exon start="5754" stop="5850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3538" stop="3773"/>
              <exon start="5754" stop="5883"/>
              <exon start="6175" stop="6180"/>
              <exon start="6279" stop="6362"/>
              <exon start="6474" stop="6538"/>
              <exon start="7461" stop="7639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3720" stop="3773"/>
              <exon start="5754" stop="5883"/>
              <exon start="6175" stop="6180"/>
              <exon start="6279" stop="6362"/>
              <exon start="6474" stop="6538"/>
              <exon start="7461" stop="7693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615739" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6175" stop="6180"/>
              <exon start="6279" stop="6362"/>
              <exon start="6474" stop="6538"/>
              <exon start="7461" stop="7809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427871" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTACCGTCCGATCTCTCAAATGCTAAAGCTTTCAATCCATCAACAAAGCGCGCCAAATACAAAAAAAATTTAACTTCATTTTCTTCTCTACTGATCCAGAAAGAAAACGAAGGGAAAATTGAAGAAAATTCAGAAAAAAATTCTCCGGTCAACAA : GTGTTTTTAGGGTTTGGATAGTATGGCAGAAGTTCCGGCGAGTCCAGGAGGTGGTTGTGGTAGCCATGAGAGTGGTGGTGAACGGAGTCCTCAATCGAATGTGAGGGAACAGGACAGGTACCTTCCGATAGCGAACATCGGTCGTATCATGAAAAAGGGATTGCCTACTAATGCTAAGATAGCTAAGGAGGCTAAAGATACTGTCCAGGAATGTGTTTCTGAGTTCATCAGTTTCATCACTAGTGA : GGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACGATTAATGGAGATGATTTGATATGGTCACTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGTACAGAGAG : ATGGAG : GGAGACACCAAGGGATCTTCTAGAGCTGGAGATACGTCTGCCAGAAACGATATAGTTGGAAGTCAGCTCAGTCCCGGTACACAG : TTTGTCTATGATGGGTCTTTTTCACAAGGCTTTGACTATGGGAACTCCCAAATGTGAATTTCCTA : TATTACAACGGTGCTGATGCGAGTATCTTCTGCCTAAAGTTCTTGTTTATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATCCTGCAAATCTTGAATTTAGCCATACTGCAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTAATTTGTTTTTTTTTGTTGTAAACTGAGAGCAATCTTCTTTTTCTGCAAAATTTGCTTGGTTCTAAGGGTGAGTGACCTTAACTTTTTGTATGAAGTTACTTTTAAGACATTTCTTTTGGAAGTTTACAGAAATATTCCTGGT</gDNA_template>
            <first_frame> L  Y  R  P  I  S  Q  M  L  K  L  S  I  H  Q  Q  S  A  P  N  T  K  K  I  *  L  H  F  L  L  Y  *  S  R  K  K  T  K  G  K  L  K  K  I  Q  K  K  I  L  R  S  T   : S  V  F  R  V  W  I  V  W  Q  K  F  R  R  V  Q  E  V  V  V  V  A  M  R  V  V  V  N  G  V  L  N  R  M  *  G  N  R  T  G  T  F  R  *  R  T  S  V  V  S  *  K  R  D  C  L  L  M  L  R  *  L  R  R  L  K  I  L  S  R  N  V  F  L  S  S  S  V  S  S  L  V   : R  Q  V  T  S  V  K  K  R  R  E  R  R  L  M  E  M  I  *  Y  G  H  *  P  P  *  D  L  R  T  T  L  S  H  *  R  P  I  *  L  G  T  E  R :   W  R :   E  T  P  R  D  L  L  E  L  E  I  R  L  P  E  T  I  *  L  E  V  S  S  V  P  V  H  S :   L  S  M  M  G  L  F  H  K  A  L  T  M  G  T  P  K  C  E  F  P   : I  L  Q  R  C  *  C  E  Y  L  L  P  K  V  L  V  Y  L  C  T  K  P  F  N  G  C  *  *  Y  M  F  E  S  S  R  N  R  K  Y  P  A  N  L  E  F  S  H  T  A  K  H  F  I  F  *  T  S  L  P  V  L  *  C  S  V  H  V  T  C  N  L  F  F  F  V  V  N  *  E  Q  S  S  F  S  A  K  F  A  W  F  *  G  *  V  T  L  T  F  C  M  K  L  L  L  R  H  F  F  W  K  F  T  E  I  F  L   </first_frame>
            <second_frame>  S  T  V  R  S  L  K  C  *  S  F  Q  S  I  N  K  A  R  Q  I  Q  K  K  F  N  F  I  F  F  S  T  D  P  E  R  K  R  R  E  N  *  R  K  F  R  K  K  F  S  G  Q  Q  :  V  F  L  G  F  G  *  Y  G  R  S  S  G  E  S  R  R  W  L  W  *  P  *  E  W  W  *  T  E  S  S  I  E  C  E  G  T  G  Q  V  P  S  D  S  E  H  R  S  Y  H  E  K  G  I  A  Y  *  C  *  D  S  *  G  G  *  R  Y  C  P  G  M  C  F  *  V  H  Q  F  H  H  *  *  :  G  K  *  Q  V  S  K  R  E  E  K  D  D  *  W  R  *  F  D  M  V  T  D  H  L  R  I  *  G  L  H  *  A  T  K  G  L  F  D  *  V  Q  R   : D  G   : G  R  H  Q  G  I  F  *  S  W  R  Y  V  C  Q  K  R  Y  S  W  K  S  A  Q  S  R  Y  T   : V  C  L  *  W  V  F  F  T  R  L  *  L  W  E  L  P  N  V  N  F  L  :  Y  Y  N  G  A  D  A  S  I  F  C  L  K  F  L  F  I  Y  V  L  S  H  S  M  V  A  D  N  I  C  L  K  A  L  G  T  E  S  I  L  Q  I  L  N  L  A  I  L  Q  N  T  L  F  S  E  L  L  F  Q  Y  F  D  A  L  Y  M  *  H  V  I  C  F  F  L  L  *  T  E  S  N  L  L  F  L  Q  N  L  L  G  S  K  G  E  *  P  *  L  F  V  *  S  Y  F  *  D  I  S  F  G  S  L  Q  K  Y  S  W  </second_frame>
            <third_frame>   L  P  S  D  L  S  N  A  K  A  F  N  P  S  T  K  R  A  K  Y  K  K  N  L  T  S  F  S  S  L  L  I  Q  K  E  N  E  G  K  I  E  E  N  S  E  K  N  S  P  V  N  K :   C  F  *  G  L  D  S  M  A  E  V  P  A  S  P  G  G  G  C  G  S  H  E  S  G  G  E  R  S  P  Q  S  N  V  R  E  Q  D  R  Y  L  P  I  A  N  I  G  R  I  M  K  K  G  L  P  T  N  A  K  I  A  K  E  A  K  D  T  V  Q  E  C  V  S  E  F  I  S  F  I  T  S  E :   A  S  D  K  C  Q  K  E  K  R  K  T  I  N  G  D  D  L  I  W  S  L  T  T  L  G  F  E  D  Y  I  E  P  L  K  A  Y  L  I  R  Y  R  E  :  M  E  :  G  D  T  K  G  S  S  R  A  G  D  T  S  A  R  N  D  I  V  G  S  Q  L  S  P  G  T  Q  :  F  V  Y  D  G  S  F  S  Q  G  F  D  Y  G  N  S  Q  M  *  I  S  Y :   I  T  T  V  L  M  R  V  S  S  A  *  S  S  C  L  S  M  Y  *  A  I  Q  W  L  L  I  I  Y  V  *  K  L  *  E  P  K  V  S  C  K  S  *  I  *  P  Y  C  K  T  L  Y  F  L  N  F  S  S  S  T  L  M  L  C  T  C  N  M  *  F  V  F  F  C  C  K  L  R  A  I  F  F  F  C  K  I  C  L  V  L  R  V  S  D  L  N  F  L  Y  E  V  T  F  K  T  F  L  L  E  V  Y  R  N  I  P  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3538" stop="3773"/>
                    <exon start="5754" stop="5883"/>
                    <exon start="6175" stop="6180"/>
                    <exon start="6279" stop="6362"/>
                    <exon start="6474" stop="6530"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLDSMAEVPASPGGGCGSHESGGERSPQSNVREQDRYLPIANIGRIMKKGLPTNAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLIWSLTTLGFEDYIEPLKAYLIRYREMEGDTKGSSRAGDTSARNDIVGSQLSPGTQFVYDGSFSQGFDYGNSQM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6509" stop="6538"/>
                    <exon start="7461" stop="7661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWELPNVNFLYYNGADASIFCLKFLFIYVLSHSMVADNICLKALGTESILQILNLAILQNTLFSELLFQYFDALYM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3296" e_stop="3452"/>
            <exon e_start="3528" e_stop="3773"/>
            <exon e_start="5754" e_stop="5883"/>
            <exon e_start="6175" e_stop="6362"/>
            <exon e_start="6474" e_stop="6538"/>
            <exon e_start="7461" e_stop="7709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.854"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.919"/>
          <exon-intron don_prob="0.964" acc_prob="0.987" e_score="0.969"/>
          <exon-intron don_prob="0.998" acc_prob="0.921" e_score="0.963"/>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="0.938"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.854">
            <gDNA_exon_boundary e_start="3296" e_stop="3452" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3453" i_stop="3527" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="3528" e_stop="3773" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3774" i_stop="5753" i_length="1980"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="5754" e_stop="5883" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5884" i_stop="6174" i_length="291"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="6175" e_stop="6362" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.921">
            <gDNA_intron_boundary i_start="6363" i_stop="6473" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="6474" e_stop="6538" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="6539" i_stop="7460" i_length="922"/>
          </intron>
          <exon e_serial="6" e_score="0.940">
            <gDNA_exon_boundary e_start="7461" e_stop="7709" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3296" stop="3452"/>
              <exon start="3528" stop="3773"/>
              <exon start="5754" stop="5850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3639" stop="3773"/>
              <exon start="5754" stop="5883"/>
              <exon start="6175" stop="6362"/>
              <exon start="6474" stop="6538"/>
              <exon start="7461" stop="7709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTACCGTCCGATCTCTCAAATGCTAAAGCTTTCAATCCATCAACAAAGCGCGCCAAATACAAAAAAAATTTAACTTCATTTTCTTCTCTACTGATCCAGAAAGAAAACGAAGGGAAAATTGAAGAAAATTCAGAAAAAAATTCTCCGGTCAACAA : GTGTTTTTAGGGTTTGGATAGTATGGCAGAAGTTCCGGCGAGTCCAGGAGGTGGTTGTGGTAGCCATGAGAGTGGTGGTGAACGGAGTCCTCAATCGAATGTGAGGGAACAGGACAGGTACCTTCCGATAGCGAACATCGGTCGTATCATGAAAAAGGGATTGCCTACTAATGCTAAGATAGCTAAGGAGGCTAAAGATACTGTCCAGGAATGTGTTTCTGAGTTCATCAGTTTCATCACTAGTGA : GGCAAGTGACAAGTGTCAAAAAGAGAAGAGAAAGACGATTAATGGAGATGATTTGATATGGTCACTGACCACCTTAGGATTTGAGGACTACATTGAGCCACTAAAGGCCTATTTGATTAGGTACAGAGAG : ATGGAGGTATGCATTGCTTCCCCGCATCAATGATATAGAGTTGCTTATTGTCTTTACCTCTGATATGTCACTAGCTATGCCTTGGGGATTGTTTCTAATGTCAGGGAGACACCAAGGGATCTTCTAGAGCTGGAGATACGTCTGCCAGAAACGATATAGTTGGAAGTCAGCTCAGTCCCGGTACACAG : TTTGTCTATGATGGGTCTTTTTCACAAGGCTTTGACTATGGGAACTCCCAAATGTGAATTTCCTA : TATTACAACGGTGCTGATGCGAGTATCTTCTGCCTAAAGTTCTTGTTTATCTATGTACTAAGCCATTCAATGGTTGCTGATAATATATGTTTGAAAGCTCTAGGAACCGAAAGTATCCTGCAAATCTTGAATTTAGCCATACTGCAAAACACTTTATTTTCTGAACTTCTCTTCCAGTACTTTGATGCTCTGTACATGTAACATGTAATTTGTTTTTTTTTGTTGTAAACTGAGAGCAATCTTCTTTTT</gDNA_template>
            <first_frame> L  Y  R  P  I  S  Q  M  L  K  L  S  I  H  Q  Q  S  A  P  N  T  K  K  I  *  L  H  F  L  L  Y  *  S  R  K  K  T  K  G  K  L  K  K  I  Q  K  K  I  L  R  S  T   : S  V  F  R  V  W  I  V  W  Q  K  F  R  R  V  Q  E  V  V  V  V  A  M  R  V  V  V  N  G  V  L  N  R  M  *  G  N  R  T  G  T  F  R  *  R  T  S  V  V  S  *  K  R  D  C  L  L  M  L  R  *  L  R  R  L  K  I  L  S  R  N  V  F  L  S  S  S  V  S  S  L  V   : R  Q  V  T  S  V  K  K  R  R  E  R  R  L  M  E  M  I  *  Y  G  H  *  P  P  *  D  L  R  T  T  L  S  H  *  R  P  I  *  L  G  T  E  R :   W  R  Y  A  L  L  P  R  I  N  D  I  E  L  L  I  V  F  T  S  D  M  S  L  A  M  P  W  G  L  F  L  M  S  G  R  H  Q  G  I  F  *  S  W  R  Y  V  C  Q  K  R  Y  S  W  K  S  A  Q  S  R  Y  T   : V  C  L  *  W  V  F  F  T  R  L  *  L  W  E  L  P  N  V  N  F  L  :  Y  Y  N  G  A  D  A  S  I  F  C  L  K  F  L  F  I  Y  V  L  S  H  S  M  V  A  D  N  I  C  L  K  A  L  G  T  E  S  I  L  Q  I  L  N  L  A  I  L  Q  N  T  L  F  S  E  L  L  F  Q  Y  F  D  A  L  Y  M  *  H  V  I  C  F  F  L  L  *  T  E  S  N  L  L  F </first_frame>
            <second_frame>  S  T  V  R  S  L  K  C  *  S  F  Q  S  I  N  K  A  R  Q  I  Q  K  K  F  N  F  I  F  F  S  T  D  P  E  R  K  R  R  E  N  *  R  K  F  R  K  K  F  S  G  Q  Q  :  V  F  L  G  F  G  *  Y  G  R  S  S  G  E  S  R  R  W  L  W  *  P  *  E  W  W  *  T  E  S  S  I  E  C  E  G  T  G  Q  V  P  S  D  S  E  H  R  S  Y  H  E  K  G  I  A  Y  *  C  *  D  S  *  G  G  *  R  Y  C  P  G  M  C  F  *  V  H  Q  F  H  H  *  *  :  G  K  *  Q  V  S  K  R  E  E  K  D  D  *  W  R  *  F  D  M  V  T  D  H  L  R  I  *  G  L  H  *  A  T  K  G  L  F  D  *  V  Q  R   : D  G  G  M  H  C  F  P  A  S  M  I  *  S  C  L  L  S  L  P  L  I  C  H  *  L  C  L  G  D  C  F  *  C  Q  G  D  T  K  G  S  S  R  A  G  D  T  S  A  R  N  D  I  V  G  S  Q  L  S  P  G  T  Q  :  F  V  Y  D  G  S  F  S  Q  G  F  D  Y  G  N  S  Q  M  *  I  S  Y :   I  T  T  V  L  M  R  V  S  S  A  *  S  S  C  L  S  M  Y  *  A  I  Q  W  L  L  I  I  Y  V  *  K  L  *  E  P  K  V  S  C  K  S  *  I  *  P  Y  C  K  T  L  Y  F  L  N  F  S  S  S  T  L  M  L  C  T  C  N  M  *  F  V  F  F  C  C  K  L  R  A  I  F  F   </second_frame>
            <third_frame>   L  P  S  D  L  S  N  A  K  A  F  N  P  S  T  K  R  A  K  Y  K  K  N  L  T  S  F  S  S  L  L  I  Q  K  E  N  E  G  K  I  E  E  N  S  E  K  N  S  P  V  N  K :   C  F  *  G  L  D  S  M  A  E  V  P  A  S  P  G  G  G  C  G  S  H  E  S  G  G  E  R  S  P  Q  S  N  V  R  E  Q  D  R  Y  L  P  I  A  N  I  G  R  I  M  K  K  G  L  P  T  N  A  K  I  A  K  E  A  K  D  T  V  Q  E  C  V  S  E  F  I  S  F  I  T  S  E :   A  S  D  K  C  Q  K  E  K  R  K  T  I  N  G  D  D  L  I  W  S  L  T  T  L  G  F  E  D  Y  I  E  P  L  K  A  Y  L  I  R  Y  R  E  :  M  E  V  C  I  A  S  P  H  Q  *  Y  R  V  A  Y  C  L  Y  L  *  Y  V  T  S  Y  A  L  G  I  V  S  N  V  R  E  T  P  R  D  L  L  E  L  E  I  R  L  P  E  T  I  *  L  E  V  S  S  V  P  V  H  S :   L  S  M  M  G  L  F  H  K  A  L  T  M  G  T  P  K  C  E  F  P   : I  L  Q  R  C  *  C  E  Y  L  L  P  K  V  L  V  Y  L  C  T  K  P  F  N  G  C  *  *  Y  M  F  E  S  S  R  N  R  K  Y  P  A  N  L  E  F  S  H  T  A  K  H  F  I  F  *  T  S  L  P  V  L  *  C  S  V  H  V  T  C  N  L  F  F  F  V  V  N  *  E  Q  S  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3538" stop="3773"/>
                    <exon start="5754" stop="5883"/>
                    <exon start="6175" stop="6207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLDSMAEVPASPGGGCGSHESGGERSPQSNVREQDRYLPIANIGRIMKKGLPTNAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLIWSLTTLGFEDYIEPLKAYLIRYREMEVCIASPHQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6509" stop="6538"/>
                    <exon start="7461" stop="7661"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWELPNVNFLYYNGADASIFCLKFLFIYVLSHSMVADNICLKALGTESILQILNLAILQNTLFSELLFQYFDALYM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8447" PGL_stop="7799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8447" e_stop="8400"/>
            <exon e_start="8160" e_stop="7799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8447" e_stop="8400" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.973">
            <gDNA_intron_boundary i_start="8399" i_stop="8161" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="8160" e_stop="7799" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8447" stop="8400"/>
              <exon start="8160" stop="7799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACGTGACCCAAAGGAGCACCTGGAGAACTATAAAAGACGTTTCTTG : TCTCAGCTCTGATGAGCATTACACAGTATCCACAATTATGCAATGATCACTGCTGAGTTCTGAACAGTTTATATGTGCAGGGGGCTGTCTTTTTCATTGTATTAGAATATGATTAATCTCAGCAGAAAATTCCACATATGGAATATATAGCTGCACAGTGAAGTTGTTTCCATATGATCTATATATACCTTACAGATTTGAGCCGTATAAGCAGCATTAGAGTAGACTGTCTACCTCACAATTCTTCATGTGTGGCCCTTTTCCTAAACCCTACTAAAAGGGGATGCTTTGTGCACCGGGATGCCCTTTAGAAATATGCAGCTGCACAGTAACTATTTCTAATCATAAAACACCAGGAATAT</gDNA_template>
            <first_frame> K  R  D  P  K  E  H  L  E  N  Y  K  R  R  F  L  :  S  Q  L  *  *  A  L  H  S  I  H  N  Y  A  M  I  T  A  E  F  *  T  V  Y  M  C  R  G  L  S  F  S  L  Y  *  N  M  I  N  L  S  R  K  F  H  I  W  N  I  *  L  H  S  E  V  V  S  I  *  S  I  Y  T  L  Q  I  *  A  V  *  A  A  L  E  *  T  V  Y  L  T  I  L  H  V  W  P  F  S  *  T  L  L  K  G  D  A  L  C  T  G  M  P  F  R  N  M  Q  L  H  S  N  Y  F  *  S  *  N  T  R  N   </first_frame>
            <second_frame>  N  V  T  Q  R  S  T  W  R  T  I  K  D  V  S  C :   L  S  S  D  E  H  Y  T  V  S  T  I  M  Q  *  S  L  L  S  S  E  Q  F  I  C  A  G  G  C  L  F  H  C  I  R  I  *  L  I  S  A  E  N  S  T  Y  G  I  Y  S  C  T  V  K  L  F  P  Y  D  L  Y  I  P  Y  R  F  E  P  Y  K  Q  H  *  S  R  L  S  T  S  Q  F  F  M  C  G  P  F  P  K  P  Y  *  K  G  M  L  C  A  P  G  C  P  L  E  I  C  S  C  T  V  T  I  S  N  H  K  T  P  G  I  </second_frame>
            <third_frame>   T  *  P  K  G  A  P  G  E  L  *  K  T  F  L   : V  S  A  L  M  S  I  T  Q  Y  P  Q  L  C  N  D  H  C  *  V  L  N  S  L  Y  V  Q  G  A  V  F  F  I  V  L  E  Y  D  *  S  Q  Q  K  I  P  H  M  E  Y  I  A  A  Q  *  S  C  F  H  M  I  Y  I  Y  L  T  D  L  S  R  I  S  S  I  R  V  D  C  L  P  H  N  S  S  C  V  A  L  F  L  N  P  T  K  R  G  C  F  V  H  R  D  A  L  *  K  Y  A  A  A  Q  *  L  F  L  I  I  K  H  Q  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13147" PGL_stop="9780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13147" e_stop="12868"/>
            <exon e_start="12079" e_stop="12005"/>
            <exon e_start="11407" e_stop="11347"/>
            <exon e_start="11238" e_stop="11152"/>
            <exon e_start="10147" e_stop="10049"/>
            <exon e_start="9973" e_stop="9871"/>
            <exon e_start="9800" e_stop="9780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.292" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13147" e_stop="12868" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.960">
            <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12079" e_stop="12005" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11407" e_stop="11347" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.843" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11346" i_stop="11239" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11238" e_stop="11152" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.292" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11151" i_stop="10148" i_length="1004"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10147" e_stop="10049" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.866">
            <gDNA_intron_boundary i_start="10048" i_stop="9974" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9973" e_stop="9871" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9870" i_stop="9801" i_length="70"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9800" e_stop="9780" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13147" stop="12868"/>
              <exon start="12079" stop="12005"/>
              <exon start="11407" stop="11347"/>
              <exon start="11238" stop="11152"/>
              <exon start="10147" stop="10049"/>
              <exon start="9973" stop="9871"/>
              <exon start="9800" stop="9780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13147" stop="12868"/>
              <exon start="12079" stop="12005"/>
              <exon start="11407" stop="11347"/>
              <exon start="11238" stop="11152"/>
              <exon start="10147" stop="10049"/>
              <exon start="9973" stop="9964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13085" stop="12868"/>
              <exon start="12079" stop="12005"/>
              <exon start="11407" stop="11347"/>
              <exon start="11238" stop="11152"/>
              <exon start="10147" stop="10049"/>
              <exon start="9973" stop="9894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13061" stop="12868"/>
              <exon start="12079" stop="12005"/>
              <exon start="11407" stop="11347"/>
              <exon start="11238" stop="11152"/>
              <exon start="10147" stop="10049"/>
              <exon start="9973" stop="9874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13021" stop="12868"/>
              <exon start="12079" stop="12005"/>
              <exon start="11407" stop="11355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG : AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA : GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAG : GCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAG : GTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGAT : GATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGAAGACAAAATAAATGATGCCA : TTGCAGCATTTGATTCCATTG</gDNA_template>
            <first_frame> *  K  E  E  K  H  S  S  A  R  E  R  G  E  I  R  S  T  T  H  *  R  T  K  S  P  K  P  K  G  E  K  W  Q  L  R  A  L  G  I  R  F  I  L  M  S  I  L  Q  F  F  F  L  *  E  P  I  S  V  H  S  L  S  L  S  L  M  L  D  T  H  *  N  G  I  T  L  V  A  P  K  F  V  L  Y  Q  L  F  Q  *  L  L  L   : E  V  L  E  R  C  F  L  L  P  L  I  P  L  Q  S  H  Q  Q  S  L  M  E  L  Q   : S  F  I  S  L  T  H  A  H  M  P  N  V  R  G  L  L  E  I  V  R :   R  C  R  K  R  L  S  W  F  L  L  I  *  R  T  G  Q  I  G  I  R  R  R  F  I  Q  Q  I  R :   Y  H  H  W  N  T  T  M  K  L  R  E  R  V  W  I  S  L  D  I  L  T  V  T  L  K  G  H  H  F  S  L  M :   I  L  P  R  E  N  S  Q  K  N  Y  S  P  T  L  T  P  F  T  K  L  *  F  R  L  *  R  K  T  K  *  M  M  P  :  L  Q  H  L  I  P  L </first_frame>
            <second_frame>  R  K  K  K  N  T  V  L  P  E  R  G  E  R  *  G  V  Q  R  I  N  E  P  N  H  Q  N  L  K  E  K  N  G  S  F  E  H  W  A  S  D  S  Y  *  C  Q  F  S  N  S  S  S  F  E  N  Q  F  Q  F  T  L  F  H  F  L  *  C  *  I  P  I  K  M  E  S  H  W  L  P  Q  N  L  C  S  T  S  C  F  N  N  C  F  W  :  K  F  *  R  D  A  S  S  C  P  *  F  L  F  R  A  T  S  N  L  *  W  N  S  K  :  A  L  Y  L  L  L  M  P  I  C  P  T  Y  V  D  C  *  K  L  *   : G  A  A  G  R  D  *  V  G  S  Y  *  S  K  E  Q  A  R  L  V  *  G  E  G  L  S  S  K  *   : G  T  I  T  G  T  Q  Q  *  S  *  G  R  E  Y  G  S  H  *  I  Y  *  Q  *  L  *  R  A  I  T  F  P  *   : *  S  F  Q  E  R  I  R  R  R  I  I  L  L  L  *  L  L  L  Q  S  C  N  F  V  F  K  G  R  Q  N  K  *  C  H :   C  S  I  *  F  H   </second_frame>
            <third_frame>   E  R  R  K  T  Q  F  C  Q  R  E  G  R  D  K  E  Y  N  A  L  T  N  Q  I  T  K  T  *  R  R  K  M  A  A  S  S  I  G  H  Q  I  H  I  N  V  N  S  P  I  L  L  P  L  R  T  N  F  S  S  L  S  F  T  F  S  N  A  R  Y  P  L  K  W  N  H  I  G  C  P  K  I  C  A  L  P  A  V  S  I  I  A  S  G :   S  S  R  E  M  L  P  P  A  L  D  S  S  S  E  P  P  A  I  F  D  G  T  P  K :   L  Y  I  S  Y  S  C  P  Y  A  Q  R  T  W  I  A  R  N  C  K  :  A  L  Q  E  E  I  K  L  V  P  I  D  L  K  N  R  P  D  W  Y  K  E  K  V  Y  P  A  N  K  :  V  P  S  L  E  H  N  N  E  V  K  G  E  S  M  D  L  I  R  Y  I  D  S  N  F  E  G  P  S  L  F  P  D  :  D  P  S  K  R  E  F  A  E  E  L  F  S  Y  F  D  S  F  Y  K  A  V  I  S  S  L  K  E  D  K  I  N  D  A   : I  A  A  F  D  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13061" stop="12868"/>
                    <exon start="12079" stop="12005"/>
                    <exon start="11407" stop="11347"/>
                    <exon start="11238" stop="11152"/>
                    <exon start="10147" stop="10049"/>
                    <exon start="9973" stop="9871"/>
                    <exon start="9800" stop="9781"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKMAASSIGHQIHINVNSPILLPLRTNFSSLSFTFSNARYPLKWNHIGCPKICALPAVSIIASGSSREMLPPALDSSSEPPAIFDGTPKLYISYSCPYAQRTWIARNCKALQEEIKLVPIDLKNRPDWYKEKVYPANKVPSLEHNNEVKGESMDLIRYIDSNFEGPSLFPDDPSKREFAEELFSYFDSFYKAVISSLKEDKINDAIAAFDSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13139" e_stop="12868"/>
            <exon e_start="12076" e_stop="12005"/>
            <exon e_start="11407" e_stop="11364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.124" e_score="0.941"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="0.986"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="13139" e_stop="12868" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.124">
            <gDNA_intron_boundary i_start="12867" i_stop="12077" i_length="791"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="12076" e_stop="12005" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="11407" e_stop="11364" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13139" stop="12868"/>
              <exon start="12076" stop="12005"/>
              <exon start="11407" stop="11364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG : TTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA : GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGA</gDNA_template>
            <first_frame> R  K  T  Q  F  C  Q  R  E  G  R  D  K  E  Y  N  A  L  T  N  Q  I  T  K  T  *  R  R  K  M  A  A  S  S  I  G  H  Q  I  H  I  N  V  N  S  P  I  L  L  P  L  R  T  N  F  S  S  L  S  F  T  F  S  N  A  R  Y  P  L  K  W  N  H  I  G  C  P  K  I  C  A  L  P  A  V  S  I  I  A  S  G :   S  R  E  M  L  P  P  A  L  D  S  S  S  E  P  P  A  I  F  D  G  T  P  K :   L  Y  I  S  Y  S  C  P  Y  A  Q  R  T  W  </first_frame>
            <second_frame>  E  K  H  S  S  A  R  E  R  G  E  I  R  S  T  T  H  *  R  T  K  S  P  K  P  K  G  E  K  W  Q  L  R  A  L  G  I  R  F  I  L  M  S  I  L  Q  F  F  F  L  *  E  P  I  S  V  H  S  L  S  L  S  L  M  L  D  T  H  *  N  G  I  T  L  V  A  P  K  F  V  L  Y  Q  L  F  Q  *  L  L  L   : V  L  E  R  C  F  L  L  P  L  I  P  L  Q  S  H  Q  Q  S  L  M  E  L  Q   : S  F  I  S  L  T  H  A  H  M  P  N  V  R  G </second_frame>
            <third_frame>   K  N  T  V  L  P  E  R  G  E  R  *  G  V  Q  R  I  N  E  P  N  H  Q  N  L  K  E  K  N  G  S  F  E  H  W  A  S  D  S  Y  *  C  Q  F  S  N  S  S  S  F  E  N  Q  F  Q  F  T  L  F  H  F  L  *  C  *  I  P  I  K  M  E  S  H  W  L  P  Q  N  L  C  S  T  S  C  F  N  N  C  F  W  :  F  *  R  D  A  S  S  C  P  *  F  L  F  R  A  T  S  N  L  *  W  N  S  K  :  A  L  Y  L  L  L  M  P  I  C  P  T  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13061" stop="12868"/>
                    <exon start="12076" stop="12005"/>
                    <exon start="11407" stop="11365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKMAASSIGHQIHINVNSPILLPLRTNFSSLSFTFSNARYPLKWNHIGCPKICALPAVSIIASGSREMLPPALDSSSEPPAIFDGTPKLYISYSCPYAQRTW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="14969" PGL_stop="15879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14969" e_stop="15879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="14969" e_stop="15879" e_length="911"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14969" stop="15635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14977" stop="15647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14992" stop="15725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14995" stop="15485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14996" stop="15621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14998" stop="15676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14998" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15003" stop="15603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15008" stop="15665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15022" stop="15795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15023" stop="15306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15115" stop="15574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15180" stop="15843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15362" stop="15755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15412" stop="15829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15473" stop="15755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15587" stop="15755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15588" stop="15755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGCACAAAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGCCAATTGTTCTAAATTTGTGTCCTCGTATTTGGCGGATAATTATCTGGATTAC</gDNA_template>
            <first_frame> L  A  Q  K  I  R  Q  S  N  S  Q  A  I  I  N  G  G  C  S  L  Q  L  T  F  L  F  L  S  L  L  P  I  F  R  E  I  P  L  Q  Q  S  L  H  N  P  P  F  Q  F  S  P  Q  T  Q  T  Q  N  S  N  Y  S  F  S  H  *  Q  N  Q  E  R  R  N  S  R  N  S  E  A  T  A  *  R  L  L  S  L  S  W  N  Q  L  Q  G  V  N  S  *  A  I  S  R  S  *  G  S  T  P  R  N  N  K  A  S  C  C  *  E  H  I  G  T  *  S  N  *  R  D  K  M  G  S  I  E  T  M  Y  E  G  N  E  C  L  V  I  C  S  *  *  R  N  P  S  C  F  E  T  L  *  D  F  S  K  G  E  E  I  G  R  *  *  F  Y  W  W  G  F  *  R  E  V  L  W  A  *  *  V  *  G  A  *  E  F  A  Y  K  S  *  D  L  F  T  A  S  W  V  F  E  R  T  C  F  S  C  C  W  D  Y  S  S  S  S  K  E  F  G  Y  G  S  *  G  L  C  K  E  I  G  G  G  R  R  W  K  S  I  I  F  V  V  I  L  G  Y  G  K  L  I  L  L  S  I  W  I  N  I  *  N  F  S  E  R  W  N  F  V  N  F  M  F  L  V  E  *  I  Y  P  W  P  I  V  L  N  L  C  P  R  I  W  R  I  I  I  W  I   </first_frame>
            <second_frame>  *  H  K  R  *  G  N  P  I  L  K  L  S  S  M  E  A  A  L  F  S  L  P  S  S  S  S  H  S  Y  P  F  S  V  K  S  H  F  N  N  P  F  I  I  P  H  S  S  S  H  L  K  L  K  P  R  T  L  T  I  R  S  A  I  S  R  T  K  K  E  E  T  V  E  T  V  K  Q  Q  L  E  D  C  Y  L  L  A  G  I  S  Y  K  G  L  T  V  K  Q  F  Q  D  L  R  A  Q  L  P  E  T  T  K  L  L  V  A  K  N  T  L  V  L  K  A  I  E  G  T  K  W  E  A  L  K  P  C  M  K  G  M  N  A  W  L  F  V  H  S  E  E  I  P  A  A  L  K  P  Y  R  T  F  L  R  E  K  K  L  E  D  N  D  F  T  G  G  V  F  E  G  K  F  Y  G  P  D  E  F  K  V  L  E  N  L  P  T  R  A  E  I  Y  S  Q  L  L  G  S  L  K  G  P  A  S  A  V  V  G  T  I  Q  A  P  A  R  N  L  V  M  V  L  K  A  Y  V  K  K  L  E  E  E  E  G  G  S  Q  *  F  L  L  *  F  L  D  M  V  S  *  Y  Y  C  L  F  G  S  I  F  E  I  F  L  R  D  G  I  L  *  I  L  C  F  W  *  N  E  F  I  L  G  Q  L  F  *  I  C  V  L  V  F  G  G  *  L  S  G  L  </second_frame>
            <third_frame>   S  T  K  D  K  A  I  Q  F  S  S  Y  H  Q  W  R  L  L  S  S  A  Y  L  P  L  P  L  T  L  T  H  F  P  *  N  P  T  S  T  I  P  S  *  S  P  I  P  V  L  T  S  N  S  N  P  E  L  *  L  F  V  Q  P  L  A  E  P  R  K  K  K  Q  S  K  Q  *  S  N  S  L  K  I  V  I  S  *  L  E  S  V  T  R  G  *  Q  L  S  N  F  K  I  L  G  L  N  S  Q  K  Q  Q  S  F  L  L  L  R  T  H  W  Y  L  K  Q  L  K  G  Q  N  G  K  H  *  N  H  V  *  R  E  *  M  L  G  Y  L  F  I  V  K  K  S  Q  L  L  *  N  L  I  G  L  F  *  G  R  R  N  W  K  I  M  I  L  L  V  G  F  L  K  G  S  F  M  G  L  M  S  L  R  C  L  R  I  C  L  Q  E  L  R  F  I  H  S  F  L  G  L  *  K  D  L  L  Q  L  L  L  G  L  F  K  L  Q  Q  G  I  W  L  W  F  L  R  L  M  *  R  N  W  R  R  K  K  V  E  V  N  N  F  C  C  N  S  W  I  W  *  A  N  T  I  V  Y  L  D  Q  Y  L  K  F  F  *  E  M  E  F  C  K  F  Y  V  F  G  R  M  N  L  S  L  A  N  C  S  K  F  V  S  S  Y  L  A  D  N  Y  L  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14985" stop="15701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNPILKLSSMEAALFSLPSSSSHSYPFSVKSHFNNPFIIPHSSSHLKLKPRTLTIRSAISRTKKEETVETVKQQLEDCYLLAGISYKGLTVKQFQDLRAQLPETTKLLVAKNTLVLKAIEGTKWEALKPCMKGMNAWLFVHSEEIPAALKPYRTFLREKKLEDNDFTGGVFEGKFYGPDEFKVLENLPTRAEIYSQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEEGGSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="15859" PGL_stop="15139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15859" e_stop="15139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="15859" e_stop="15139" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15859" stop="15139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15844" stop="15332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15841" stop="15276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15835" stop="15154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAATACGAGGACACAAATTTAGAACAATTGGCCAAGGATAAATTCATTCTACCAAAAACATAAAATTTACAAAATTCCATCTCTCAGAAAAATTTCAAATATTGATCCAAATAGACAATAGTATTAGCTTACCATATCCAAGAATTACAACAAAAATTATTGACTTCCACCTTCTTCCTCCTCCAATTTCTTTACATAAGCCTTAAGAACCATAACCAAATTCCTTGCTGGAGCTTGAATAGTCCCAACAACAGCTGAAGCAGGTCCTTTCAAAGACCCAAGAAGCTGTGAATAAATCTCAGCTCTTGTAGGCAAATTCTCAAGCACCTTAAACTCATCAGGCCCATAAAACTTCCCTTCAAAAACCCCACCAGTAAAATCATTATCTTCCAATTTCTTCTCCCTTAGAAAAGTCCTATAAGGTTTCAAAGCAGCTGGGATTTCTTCACTATGAACAAATAACCAAGCATTCATTCCCTTCATACATGGTTTCAATGCTTCCCATTTTGTCCCTTCAATTGCTTTAAGTACCAATGTGTTCTTAGCAACAAGAAGCTTTGTTGTTTCTGGGAGTTGAGCCCTAAGATCTTGAAATTGCTTAACTGTTAACCCCTTGTAACTGATTCCAGCTAAGAGATAACAATCTTCAAGCTGTTGCTTCACTGTTTCGACTGTTTCTTCTTTCTTGGTTCTGCTAATGGCTGAACGAATAGTTAGAG</gDNA_template>
            <first_frame> P  N  T  R  T  Q  I  *  N  N  W  P  R  I  N  S  F  Y  Q  K  H  K  I  Y  K  I  P  S  L  R  K  I  S  N  I  D  P  N  R  Q  *  Y  *  L  T  I  S  K  N  Y  N  K  N  Y  *  L  P  P  S  S  S  S  N  F  F  T  *  A  L  R  T  I  T  K  F  L  A  G  A  *  I  V  P  T  T  A  E  A  G  P  F  K  D  P  R  S  C  E  *  I  S  A  L  V  G  K  F  S  S  T  L  N  S  S  G  P  *  N  F  P  S  K  T  P  P  V  K  S  L  S  S  N  F  F  S  L  R  K  V  L  *  G  F  K  A  A  G  I  S  S  L  *  T  N  N  Q  A  F  I  P  F  I  H  G  F  N  A  S  H  F  V  P  S  I  A  L  S  T  N  V  F  L  A  T  R  S  F  V  V  S  G  S  *  A  L  R  S  *  N  C  L  T  V  N  P  L  *  L  I  P  A  K  R  *  Q  S  S  S  C  C  F  T  V  S  T  V  S  S  F  L  V  L  L  M  A  E  R  I  V  R  </first_frame>
            <second_frame>  Q  I  R  G  H  K  F  R  T  I  G  Q  G  *  I  H  S  T  K  N  I  K  F  T  K  F  H  L  S  E  K  F  Q  I  L  I  Q  I  D  N  S  I  S  L  P  Y  P  R  I  T  T  K  I  I  D  F  H  L  L  P  P  P  I  S  L  H  K  P  *  E  P  *  P  N  S  L  L  E  L  E  *  S  Q  Q  Q  L  K  Q  V  L  S  K  T  Q  E  A  V  N  K  S  Q  L  L  *  A  N  S  Q  A  P  *  T  H  Q  A  H  K  T  S  L  Q  K  P  H  Q  *  N  H  Y  L  P  I  S  S  P  L  E  K  S  Y  K  V  S  K  Q  L  G  F  L  H  Y  E  Q  I  T  K  H  S  F  P  S  Y  M  V  S  M  L  P  I  L  S  L  Q  L  L  *  V  P  M  C  S  *  Q  Q  E  A  L  L  F  L  G  V  E  P  *  D  L  E  I  A  *  L  L  T  P  C  N  *  F  Q  L  R  D  N  N  L  Q  A  V  A  S  L  F  R  L  F  L  L  S  W  F  C  *  W  L  N  E  *  L  E </second_frame>
            <third_frame>   K  Y  E  D  T  N  L  E  Q  L  A  K  D  K  F  I  L  P  K  T  *  N  L  Q  N  S  I  S  Q  K  N  F  K  Y  *  S  K  *  T  I  V  L  A  Y  H  I  Q  E  L  Q  Q  K  L  L  T  S  T  F  F  L  L  Q  F  L  Y  I  S  L  K  N  H  N  Q  I  P  C  W  S  L  N  S  P  N  N  S  *  S  R  S  F  Q  R  P  K  K  L  *  I  N  L  S  S  C  R  Q  I  L  K  H  L  K  L  I  R  P  I  K  L  P  F  K  N  P  T  S  K  I  I  I  F  Q  F  L  L  P  *  K  S  P  I  R  F  Q  S  S  W  D  F  F  T  M  N  K  *  P  S  I  H  S  L  H  T  W  F  Q  C  F  P  F  C  P  F  N  C  F  K  Y  Q  C  V  L  S  N  K  K  L  C  C  F  W  E  L  S  P  K  I  L  K  L  L  N  C  *  P  L  V  T  D  S  S  *  E  I  T  I  F  K  L  L  L  H  C  F  D  C  F  F  F  L  G  S  A  N  G  *  T  N  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="20019" PGL_stop="24957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20019" e_stop="20257"/>
            <exon e_start="21340" e_stop="21472"/>
            <exon e_start="22707" e_stop="22795"/>
            <exon e_start="22900" e_stop="23022"/>
            <exon e_start="23333" e_stop="23439"/>
            <exon e_start="23519" e_stop="23544"/>
            <exon e_start="23630" e_stop="23786"/>
            <exon e_start="24240" e_stop="24455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20019" e_stop="20257" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21340" e_stop="21472" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.958">
            <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22707" e_stop="22795" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22900" e_stop="23022" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23333" e_stop="23439" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.950">
            <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23544" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="0.633" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23630" e_stop="23786" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24240" e_stop="24455" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20019" stop="20257"/>
              <exon start="21340" stop="21431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20022" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20027" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20027" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20028" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20029" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20030" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20035" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20040" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20045" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20088" stop="20257"/>
              <exon start="21340" stop="21429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20257"/>
              <exon start="21340" stop="21423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21369" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21396" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22761" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22926" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413352" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGCAAAAACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA : GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG : GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG : CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG : AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAG : GCCAGGTCCTGCTGCCCAGTCATCTG : ACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCG : GCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGTAGTAATTCGTGTGTGCTTCTC</gDNA_template>
            <first_frame> R  A  K  T  K  L  V  F  S  E  K  R  R  E  K  K  P  F  E  Y  S  R  E  A  K  S  E  H  F  C  F  Y  Q  T  V  R  S  L  S  K  Q  Q  Q  Q  Q  K  K  N  L  K  K  W  T  I  T  L  E  K  *  W  T  S  K  P  S  L  H  E  P  *  R  R  K  A  F  S  L  R  S  E :   L  N  L  E  Q  A  F  L  R  Q  L  K  M  R  I  G  *  L  R  R  M  K  P  C  P  L  R  Y  W  V  A  A  M  I  R  Q  N  N  S  I  I  H  L  Q  :  E  G  Y  *  L  H  L  Y  V  N  I  W  I  G  L  N  *  T  T  H  L  R  C  I  C  Q  S  V  T  C :   Q  R  S  R  G  N  L  S  *  K  N  L  A  A  R  M  G  M  I  L  T  G  M  V  T  V  L  R  C  F  W  M  F  L  K  D  S  *  N  T  R :   T  S  L  K  Q  R  V  L  D  L  C  P  T  L  K  L  G  M  L  G  S  L  L  H  L  Q  L  P  G  A  Y  H  R  *  E   : G  Q  V  L  L  P  S  H  L  :  T  E  G  Q  V  H  L  Y  P  D  I  G  K  M  N  T  T  G  D  M  K  M  K  S  F  R  K  M  *  C  L  P  H  L  P  *  K  T  F  N  W  T  E  K  L  G  T  L  P  L  H  G   : G  I  E  V  M  A  F  L  R  M  M  A  G  W  N  K  I  E  I  I  S  S  R  N  H  *  L  Y  G  N  *  *  Y  P  S  T  *  K  C  N  V  L  M  Y  A  M  Y  D  L  I  H  N  I  A  C  S  N  S  C  V  L  L  I  F  L  *  *  F  V  C  A  S  </first_frame>
            <second_frame>  G  Q  K  R  N  L  S  S  P  R  R  E  E  K  K  S  H  S  N  T  A  E  K  Q  R  A  S  I  S  A  S  I  K  L  Y  E  A  S  Q  S  N  S  S  S  R  R  R  I  *  R  N  G  R  L  H  *  R  N  D  G  P  Q  N  P  R  Y  T  N  P  R  E  E  R  R  S  R  *  D  P   : S  *  T  *  S  K  R  F  *  G  N  *  R  *  G  *  G  N  *  E  G  *  N  L  A  P  C  A  I  G  *  L  Q  *  S  G  K  T  T  P  *  F  T  F  R :   K  V  T  N  C  T  C  M  *  I  F  G  L  G  S  I  K  P  H  I  *  G  V  F  A  R  V  *  L   : A  K  G  V  V  E  I  *  A  K  R  I  *  Q  Q  E  W  V  *  S  *  Q  E  W  *  Q  C  S  V  A  F  G  C  S  *  R  I  L  E  I  R   : E  L  L  S  S  K  G  C  W  I  S  V  Q  H  *  S  *  E  C  *  E  A  F  F  I  F  S  C  R  G  L  T  T  V  R  K  :  A  R  S  C  C  P  V  I  * :   Q  K  G  R  F  I  C  I  R  I  *  E  R  *  I  Q  L  E  I  *  K  *  R  A  F  A  R  C  N  A  C  L  I  C  L  R  K  P  S  I  G  Q  K  S  S  E  P  C  H  F  M  A  :  A  *  R  *  W  H  F  *  E  *  W  Q  D  G  I  R  L  R  L  Y  H  L  E  I  T  N  Y  M  G  I  D  D  I  L  Q  R  R  N  A  M  F  *  C  T  L  C  M  I  *  Y  T  I  L  L  V  V  I  R  V  C  F  S  F  S  C  S  N  S  C  V  L  L </second_frame>
            <third_frame>   G  K  N  E  T  C  L  L  R  E  E  K  R  K  K  A  I  R  I  Q  Q  R  S  K  E  R  A  F  L  L  L  S  N  C  T  K  P  L  K  A  T  A  A  A  E  E  E  S  E  E  M  D  D  Y  T  R  E  M  M  D  L  K  T  L  V  T  R  T  L  E  K  K  G  V  L  A  K  I  R  :  A  E  L  R  A  S  V  F  E  A  I  E  D  E  D  R  V  I  E  K  D  E  T  L  P  P  A  L  L  G  S  C  N  D  Q  A  K  Q  L  H  N  S  P  S   : G  R  L  L  T  A  L  V  C  E  Y  L  D  W  A  Q  L  N  H  T  F  K  V  Y  L  P  E  C  N  L  :  P  K  E  S  W  K  S  E  L  K  E  F  S  S  K  N  G  Y  D  L  N  R  N  G  D  S  A  P  L  L  L  D  V  L  E  G  F  L  K  Y  E  :  N  F  S  Q  A  K  G  A  G  S  L  S  N  T  E  A  R  N  V  R  K  P  S  S  S  S  V  A  G  G  L  P  P  L  G  R :   P  G  P  A  A  Q  S  S   : D  R  R  A  G  S  S  V  S  G  Y  R  K  D  E  Y  N  W  R  Y  E  N  E  E  L  S  Q  D  V  M  L  A  S  S  A  L  E  N  L  Q  L  D  R  K  A  R  N  L  A  T  S  W  R :   H  R  G  D  G  I  S  E  N  D  G  R  M  E  *  D  *  D  Y  I  I  S  K  S  L  I  I  W  E  L  M  I  S  F  N  V  E  M  Q  C  S  N  V  R  Y  V  *  F  N  T  Q  Y  C  L  *  *  F  V  C  A  S  H  F  P  V  V  I  R  V  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20021" stop="20257"/>
                    <exon start="21340" stop="21472"/>
                    <exon start="22707" stop="22795"/>
                    <exon start="22900" stop="23022"/>
                    <exon start="23333" stop="23439"/>
                    <exon start="23519" stop="23544"/>
                    <exon start="23630" stop="23786"/>
                    <exon start="24240" stop="24285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKNETCLLREEKRKKAIRIQQRSKERAFLLLSNCTKPLKATAAAEEESEEMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEDEDRVIEKDETLPPALLGSCNDQAKQLHNSPSGRLLTALVCEYLDWAQLNHTFKVYLPECNLPKESWKSELKEFSSKNGYDLNRNGDSAPLLLDVLEGFLKYENFSQAKGAGSLSNTEARNVRKPSSSSVAGGLPPLGRPGPAAQSSDRRAGSSVSGYRKDEYNWRYENEELSQDVMLASSALENLQLDRKARNLATSWRHRGDGISENDGRME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20019" e_stop="20257"/>
            <exon e_start="21340" e_stop="21472"/>
            <exon e_start="22707" e_stop="22795"/>
            <exon e_start="22900" e_stop="23022"/>
            <exon e_start="23333" e_stop="23439"/>
            <exon e_start="23519" e_stop="23544"/>
            <exon e_start="23630" e_stop="23786"/>
            <exon e_start="24240" e_stop="24404"/>
            <exon e_start="24935" e_stop="24957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.130" e_score="0.970"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20019" e_stop="20257" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21340" e_stop="21472" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.958">
            <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22707" e_stop="22795" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22900" e_stop="23022" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23333" e_stop="23439" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.950">
            <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23544" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="0.633" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23630" e_stop="23786" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453"/>
          </intron>
          <exon e_serial="8" e_score="0.970">
            <gDNA_exon_boundary e_start="24240" e_stop="24404" e_length="165"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.130">
            <gDNA_intron_boundary i_start="24405" i_stop="24934" i_length="530"/>
          </intron>
          <exon e_serial="9" e_score="0.565">
            <gDNA_exon_boundary e_start="24935" e_stop="24957" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20019" stop="20257"/>
              <exon start="21340" stop="21431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20022" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20027" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20027" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20028" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20029" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20030" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20035" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20040" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20045" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20088" stop="20257"/>
              <exon start="21340" stop="21429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20257"/>
              <exon start="21340" stop="21423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22761" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23643" stop="23786"/>
              <exon start="24240" stop="24404"/>
              <exon start="24935" stop="24957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281249" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGCAAAAACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA : GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG : GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG : CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG : AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAG : GCCAGGTCCTGCTGCCCAGTCATCTG : ACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCG : GCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTA : GCTACAACTGAAAACTATCAAGA</gDNA_template>
            <first_frame> R  A  K  T  K  L  V  F  S  E  K  R  R  E  K  K  P  F  E  Y  S  R  E  A  K  S  E  H  F  C  F  Y  Q  T  V  R  S  L  S  K  Q  Q  Q  Q  Q  K  K  N  L  K  K  W  T  I  T  L  E  K  *  W  T  S  K  P  S  L  H  E  P  *  R  R  K  A  F  S  L  R  S  E :   L  N  L  E  Q  A  F  L  R  Q  L  K  M  R  I  G  *  L  R  R  M  K  P  C  P  L  R  Y  W  V  A  A  M  I  R  Q  N  N  S  I  I  H  L  Q  :  E  G  Y  *  L  H  L  Y  V  N  I  W  I  G  L  N  *  T  T  H  L  R  C  I  C  Q  S  V  T  C :   Q  R  S  R  G  N  L  S  *  K  N  L  A  A  R  M  G  M  I  L  T  G  M  V  T  V  L  R  C  F  W  M  F  L  K  D  S  *  N  T  R :   T  S  L  K  Q  R  V  L  D  L  C  P  T  L  K  L  G  M  L  G  S  L  L  H  L  Q  L  P  G  A  Y  H  R  *  E   : G  Q  V  L  L  P  S  H  L  :  T  E  G  Q  V  H  L  Y  P  D  I  G  K  M  N  T  T  G  D  M  K  M  K  S  F  R  K  M  *  C  L  P  H  L  P  *  K  T  F  N  W  T  E  K  L  G  T  L  P  L  H  G   : G  I  E  V  M  A  F  L  R  M  M  A  G  W  N  K  I  E  I  I  S  S  R  N  H  *  L  Y  G  N  *  *  Y  P  S  T  *  K  C  N  V  L  M  Y  A  M  Y  D  L  I  H  N  I  A  C   : S  Y  N  *  K  L  S  R </first_frame>
            <second_frame>  G  Q  K  R  N  L  S  S  P  R  R  E  E  K  K  S  H  S  N  T  A  E  K  Q  R  A  S  I  S  A  S  I  K  L  Y  E  A  S  Q  S  N  S  S  S  R  R  R  I  *  R  N  G  R  L  H  *  R  N  D  G  P  Q  N  P  R  Y  T  N  P  R  E  E  R  R  S  R  *  D  P   : S  *  T  *  S  K  R  F  *  G  N  *  R  *  G  *  G  N  *  E  G  *  N  L  A  P  C  A  I  G  *  L  Q  *  S  G  K  T  T  P  *  F  T  F  R :   K  V  T  N  C  T  C  M  *  I  F  G  L  G  S  I  K  P  H  I  *  G  V  F  A  R  V  *  L   : A  K  G  V  V  E  I  *  A  K  R  I  *  Q  Q  E  W  V  *  S  *  Q  E  W  *  Q  C  S  V  A  F  G  C  S  *  R  I  L  E  I  R   : E  L  L  S  S  K  G  C  W  I  S  V  Q  H  *  S  *  E  C  *  E  A  F  F  I  F  S  C  R  G  L  T  T  V  R  K  :  A  R  S  C  C  P  V  I  * :   Q  K  G  R  F  I  C  I  R  I  *  E  R  *  I  Q  L  E  I  *  K  *  R  A  F  A  R  C  N  A  C  L  I  C  L  R  K  P  S  I  G  Q  K  S  S  E  P  C  H  F  M  A  :  A  *  R  *  W  H  F  *  E  *  W  Q  D  G  I  R  L  R  L  Y  H  L  E  I  T  N  Y  M  G  I  D  D  I  L  Q  R  R  N  A  M  F  *  C  T  L  C  M  I  *  Y  T  I  L  L  V  :  A  T  T  E  N  Y  Q   </second_frame>
            <third_frame>   G  K  N  E  T  C  L  L  R  E  E  K  R  K  K  A  I  R  I  Q  Q  R  S  K  E  R  A  F  L  L  L  S  N  C  T  K  P  L  K  A  T  A  A  A  E  E  E  S  E  E  M  D  D  Y  T  R  E  M  M  D  L  K  T  L  V  T  R  T  L  E  K  K  G  V  L  A  K  I  R  :  A  E  L  R  A  S  V  F  E  A  I  E  D  E  D  R  V  I  E  K  D  E  T  L  P  P  A  L  L  G  S  C  N  D  Q  A  K  Q  L  H  N  S  P  S   : G  R  L  L  T  A  L  V  C  E  Y  L  D  W  A  Q  L  N  H  T  F  K  V  Y  L  P  E  C  N  L  :  P  K  E  S  W  K  S  E  L  K  E  F  S  S  K  N  G  Y  D  L  N  R  N  G  D  S  A  P  L  L  L  D  V  L  E  G  F  L  K  Y  E  :  N  F  S  Q  A  K  G  A  G  S  L  S  N  T  E  A  R  N  V  R  K  P  S  S  S  S  V  A  G  G  L  P  P  L  G  R :   P  G  P  A  A  Q  S  S   : D  R  R  A  G  S  S  V  S  G  Y  R  K  D  E  Y  N  W  R  Y  E  N  E  E  L  S  Q  D  V  M  L  A  S  S  A  L  E  N  L  Q  L  D  R  K  A  R  N  L  A  T  S  W  R :   H  R  G  D  G  I  S  E  N  D  G  R  M  E  *  D  *  D  Y  I  I  S  K  S  L  I  I  W  E  L  M  I  S  F  N  V  E  M  Q  C  S  N  V  R  Y  V  *  F  N  T  Q  Y  C  L  * :   L  Q  L  K  T  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20021" stop="20257"/>
                    <exon start="21340" stop="21472"/>
                    <exon start="22707" stop="22795"/>
                    <exon start="22900" stop="23022"/>
                    <exon start="23333" stop="23439"/>
                    <exon start="23519" stop="23544"/>
                    <exon start="23630" stop="23786"/>
                    <exon start="24240" stop="24285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKNETCLLREEKRKKAIRIQQRSKERAFLLLSNCTKPLKATAAAEEESEEMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEDEDRVIEKDETLPPALLGSCNDQAKQLHNSPSGRLLTALVCEYLDWAQLNHTFKVYLPECNLPKESWKSELKEFSSKNGYDLNRNGDSAPLLLDVLEGFLKYENFSQAKGAGSLSNTEARNVRKPSSSSVAGGLPPLGRPGPAAQSSDRRAGSSVSGYRKDEYNWRYENEELSQDVMLASSALENLQLDRKARNLATSWRHRGDGISENDGRME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20019" e_stop="20257"/>
            <exon e_start="21340" e_stop="21472"/>
            <exon e_start="22707" e_stop="22797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.958" e_score="0.985"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="20019" e_stop="20257" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="21340" e_stop="21472" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.958">
            <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="0.955">
            <gDNA_exon_boundary e_start="22707" e_stop="22797" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20019" stop="20257"/>
              <exon start="21340" stop="21431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20027" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20035" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20035" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20088" stop="20257"/>
              <exon start="21340" stop="21429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281442" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20257"/>
              <exon start="21340" stop="21423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280091" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGCAAAAACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA : GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG : GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGT</gDNA_template>
            <first_frame> R  A  K  T  K  L  V  F  S  E  K  R  R  E  K  K  P  F  E  Y  S  R  E  A  K  S  E  H  F  C  F  Y  Q  T  V  R  S  L  S  K  Q  Q  Q  Q  Q  K  K  N  L  K  K  W  T  I  T  L  E  K  *  W  T  S  K  P  S  L  H  E  P  *  R  R  K  A  F  S  L  R  S  E :   L  N  L  E  Q  A  F  L  R  Q  L  K  M  R  I  G  *  L  R  R  M  K  P  C  P  L  R  Y  W  V  A  A  M  I  R  Q  N  N  S  I  I  H  L  Q  :  E  G  Y  *  L  H  L  Y  V  N  I  W  I  G  L  N  *  T  T  H  L  R  C  I  C  Q  S  V  T  W  </first_frame>
            <second_frame>  G  Q  K  R  N  L  S  S  P  R  R  E  E  K  K  S  H  S  N  T  A  E  K  Q  R  A  S  I  S  A  S  I  K  L  Y  E  A  S  Q  S  N  S  S  S  R  R  R  I  *  R  N  G  R  L  H  *  R  N  D  G  P  Q  N  P  R  Y  T  N  P  R  E  E  R  R  S  R  *  D  P   : S  *  T  *  S  K  R  F  *  G  N  *  R  *  G  *  G  N  *  E  G  *  N  L  A  P  C  A  I  G  *  L  Q  *  S  G  K  T  T  P  *  F  T  F  R :   K  V  T  N  C  T  C  M  *  I  F  G  L  G  S  I  K  P  H  I  *  G  V  F  A  R  V  *  L  G </second_frame>
            <third_frame>   G  K  N  E  T  C  L  L  R  E  E  K  R  K  K  A  I  R  I  Q  Q  R  S  K  E  R  A  F  L  L  L  S  N  C  T  K  P  L  K  A  T  A  A  A  E  E  E  S  E  E  M  D  D  Y  T  R  E  M  M  D  L  K  T  L  V  T  R  T  L  E  K  K  G  V  L  A  K  I  R  :  A  E  L  R  A  S  V  F  E  A  I  E  D  E  D  R  V  I  E  K  D  E  T  L  P  P  A  L  L  G  S  C  N  D  Q  A  K  Q  L  H  N  S  P  S   : G  R  L  L  T  A  L  V  C  E  Y  L  D  W  A  Q  L  N  H  T  F  K  V  Y  L  P  E  C  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20021" stop="20257"/>
                    <exon start="21340" stop="21472"/>
                    <exon start="22707" stop="22795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKNETCLLREEKRKKAIRIQQRSKERAFLLLSNCTKPLKATAAAEEESEEMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEDEDRVIEKDETLPPALLGSCNDQAKQLHNSPSGRLLTALVCEYLDWAQLNHTFKVYLPECNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="28626" PGL_stop="25524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28626" e_stop="28588"/>
            <exon e_start="27801" e_stop="27732"/>
            <exon e_start="27202" e_stop="27122"/>
            <exon e_start="26936" e_stop="26835"/>
            <exon e_start="26636" e_stop="26512"/>
            <exon e_start="26307" e_stop="26187"/>
            <exon e_start="25574" e_stop="25524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.957"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.963"/>
          <exon-intron don_prob="0.987" acc_prob="0.932" e_score="0.971"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="0.976"/>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28626" e_stop="28588" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.965">
            <gDNA_intron_boundary i_start="28587" i_stop="27802" i_length="786"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="27801" e_stop="27732" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27731" i_stop="27203" i_length="529"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="27202" e_stop="27122" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27121" i_stop="26937" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="26936" e_stop="26835" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.932">
            <gDNA_intron_boundary i_start="26834" i_stop="26637" i_length="198"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="26636" e_stop="26512" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="26511" i_stop="26308" i_length="204"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="26307" e_stop="26187" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26186" i_stop="25575" i_length="612"/>
          </intron>
          <exon e_serial="7" e_score="0.902">
            <gDNA_exon_boundary e_start="25574" e_stop="25524" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28626" stop="28588"/>
              <exon start="27801" stop="27732"/>
              <exon start="27202" stop="27122"/>
              <exon start="26936" stop="26835"/>
              <exon start="26636" stop="26512"/>
              <exon start="26307" stop="26187"/>
              <exon start="25574" stop="25524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCAAGTTGCTGGAGGAGAAAAAATCTGCTGAACTCAG : AGCTGAGGAGTTGGAAGCAGCATTGATGGAGATGGTCAAGCAGGATAACAGGCGGCAGTTGAGCGCACGG : GTTGAGCAATTAGAAAGACAGGTTGCTGAGCTTCAAGAGGCCCTTGTTGCTAAGCAAGAACAAGAGAATGCCATGCTTCAG : GTTTTGATGAGGGTGGAGCAAGAACAGAGGGTAACAGAAGATGCTCGCATATTTGCTGAACAAGAGGCAGCAGCTCAAAGACATACCTCTCAATTGCTACAG : GAAAAGTATGAAGAAGCCATCGCTTCCCTTGCTGAGACGGAAAAGAGGGTGGTTATGGCAGAATCGATGTTGGAGGCTACCTTGCAGTACCAATCTGGACAAGATAAAGTGCTTCCCTCTCCAAG : ATCTACGCAGCAAGTTTCATCTCCTGTAGGGGGCAACCAAGAATCATCACTAGAGATACCTGCTAGAAAAATCAGTTTGCTCTCAAGACCGTTTGGACTTGGCTGGCGTGACAGCAACAAG : GGGAAGCCGACCGAGGAGGTTAATGACACCAAAACAGTGAATGAGGAGCAG</gDNA_template>
            <first_frame> V  Q  V  A  G  G  E  K  I  C  *  T  Q  :  S  *  G  V  G  S  S  I  D  G  D  G  Q  A  G  *  Q  A  A  V  E  R  T   : G  *  A  I  R  K  T  G  C  *  A  S  R  G  P  C  C  *  A  R  T  R  E  C  H  A  S   : G  F  D  E  G  G  A  R  T  E  G  N  R  R  C  S  H  I  C  *  T  R  G  S  S  S  K  T  Y  L  S  I  A  T   : G  K  V  *  R  S  H  R  F  P  C  *  D  G  K  E  G  G  Y  G  R  I  D  V  G  G  Y  L  A  V  P  I  W  T  R  *  S  A  S  L  S  K  :  I  Y  A  A  S  F  I  S  C  R  G  Q  P  R  I  I  T  R  D  T  C  *  K  N  Q  F  A  L  K  T  V  W  T  W  L  A  *  Q  Q  Q   : G  E  A  D  R  G  G  *  *  H  Q  N  S  E  *  G  A  </first_frame>
            <second_frame>  S  K  L  L  E  E  K  K  S  A  E  L  R :   A  E  E  L  E  A  A  L  M  E  M  V  K  Q  D  N  R  R  Q  L  S  A  R  :  V  E  Q  L  E  R  Q  V  A  E  L  Q  E  A  L  V  A  K  Q  E  Q  E  N  A  M  L  Q  :  V  L  M  R  V  E  Q  E  Q  R  V  T  E  D  A  R  I  F  A  E  Q  E  A  A  A  Q  R  H  T  S  Q  L  L  Q  :  E  K  Y  E  E  A  I  A  S  L  A  E  T  E  K  R  V  V  M  A  E  S  M  L  E  A  T  L  Q  Y  Q  S  G  Q  D  K  V  L  P  S  P  R :   S  T  Q  Q  V  S  S  P  V  G  G  N  Q  E  S  S  L  E  I  P  A  R  K  I  S  L  L  S  R  P  F  G  L  G  W  R  D  S  N  K  :  G  K  P  T  E  E  V  N  D  T  K  T  V  N  E  E  Q </second_frame>
            <third_frame>   P  S  C  W  R  R  K  N  L  L  N  S   : E  L  R  S  W  K  Q  H  *  W  R  W  S  S  R  I  T  G  G  S  *  A  H  G :   L  S  N  *  K  D  R  L  L  S  F  K  R  P  L  L  L  S  K  N  K  R  M  P  C  F  R :   F  *  *  G  W  S  K  N  R  G  *  Q  K  M  L  A  Y  L  L  N  K  R  Q  Q  L  K  D  I  P  L  N  C  Y  R :   K  S  M  K  K  P  S  L  P  L  L  R  R  K  R  G  W  L  W  Q  N  R  C  W  R  L  P  C  S  T  N  L  D  K  I  K  C  F  P  L  Q   : D  L  R  S  K  F  H  L  L  *  G  A  T  K  N  H  H  *  R  Y  L  L  E  K  S  V  C  S  Q  D  R  L  D  L  A  G  V  T  A  T  R :   G  S  R  P  R  R  L  M  T  P  K  Q  *  M  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28625" stop="28588"/>
                    <exon start="27801" stop="27732"/>
                    <exon start="27202" stop="27122"/>
                    <exon start="26936" stop="26835"/>
                    <exon start="26636" stop="26512"/>
                    <exon start="26307" stop="26187"/>
                    <exon start="25574" stop="25524"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLLEEKKSAELRAEELEAALMEMVKQDNRRQLSARVEQLERQVAELQEALVAKQEQENAMLQVLMRVEQEQRVTEDARIFAEQEAAAQRHTSQLLQEKYEEAIASLAETEKRVVMAESMLEATLQYQSGQDKVLPSPRSTQQVSSPVGGNQESSLEIPARKISLLSRPFGLGWRDSNKGKPTEEVNDTKTVNEEQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="38180" PGL_stop="36209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38180" e_stop="38136"/>
            <exon e_start="37854" e_stop="37659"/>
            <exon e_start="36566" e_stop="36209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38180" e_stop="38136" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.880">
            <gDNA_intron_boundary i_start="38135" i_stop="37855" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37854" e_stop="37659" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37658" i_stop="36567" i_length="1092"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36566" e_stop="36209" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38180" stop="38136"/>
              <exon start="37854" stop="37659"/>
              <exon start="36566" stop="36212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38170" stop="38136"/>
              <exon start="37854" stop="37659"/>
              <exon start="36566" stop="36209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCGTTCTCCTGAAGTTCACCTCTACCGCTGCCGATTAAATCACT : GTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAA : GGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACACATC</gDNA_template>
            <first_frame> G  V  L  L  K  F  T  S  T  A  A  D  *  I  T  :  V  L  S  N  L  T  I  K  E  T  N  *  S  P  E  W  R  *  R  T  L  Y  *  Q  L  R  E  *  A  L  W  F  Y  *  *  G  A  M  L  N  S  L  L  P  S  S  S  A  M  F  V  K  F  A  I  G  L  R  K  S  L  L  P  R  L   : R  E  *  R  R  Q  S  R  R  R  Y  L  R  R  T  S  P  K  T  T  N  T  R  F  D  S  Y  L  S  D  A  L  R  F  P  S  Y  H  F  R  F  C  S  I  T  C  D  *  F  R  L  P  I  S  V  S  I  L  L  N  I  L  L  P  F  L  V  L  A  K  *  A  I  F  T  Y  C  V  T  I  E  L  S  K  Y  *  *  L  T  *  L  N  S  L  V  S  C  N  N  H  D  L  S  D  S  L  V  S  L  K  L  L  G  Q  I  T  F  D  T   </first_frame>
            <second_frame>  A  F  S  *  S  S  P  L  P  L  P  I  K  S  L :   F  *  A  I  S  Q  *  K  K  R  I  D  P  Q  N  G  V  N  E  L  Y  T  D  S  C  G  S  E  R  C  G  F  I  D  E  E  R  C  *  T  V  C  F  H  L  Q  A  Q  C  S  S  N  S  P  L  A  *  G  R  V  C  F  R  G  *  :  G  N  R  E  G  K  A  E  G  D  I  S  E  G  H  P  Q  R  R  Q  T  L  D  L  T  H  T  Y  Q  M  P  C  D  F  P  A  T  I  S  D  F  V  P  *  H  V  T  N  L  D  S  P  L  V  *  V  S  C  *  I  Y  F  Y  H  F  W  Y  W  Q  N  E  L  F  S  H  T  V  S  P  *  S  F  Q  N  T  S  N  *  H  D  *  T  L  L  *  V  V  I  I  M  I  S  Q  I  L  L  Y  L  *  S  Y  *  V  K  *  H  L  T  H  </second_frame>
            <third_frame>   R  S  P  E  V  H  L  Y  R  C  R  L  N  H   : C  F  K  Q  S  H  N  K  R  N  E  L  I  P  R  M  A  L  T  N  F  I  L  T  V  A  G  V  S  A  V  V  L  L  M  R  S  D  V  K  Q  S  A  S  I  F  K  R  N  V  R  Q  I  R  H  W  L  E  E  E  S  A  S  A  A  K :   G  I  E  K  A  K  P  K  E  I  S  Q  K  D  I  P  K  D  D  K  H  *  I  *  L  I  L  I  R  C  L  A  I  S  Q  L  P  F  Q  I  L  F  H  N  M  *  L  I  *  T  P  H  *  C  K  Y  P  V  K  Y  T  F  T  I  F  G  I  G  K  M  S  Y  F  H  I  L  C  H  H  R  A  F  K  I  L  V  I  D  M  T  E  L  S  C  K  L  *  *  S  *  S  L  R  F  S  C  I  F  E  A  T  R  S  N  N  I  *  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38178" stop="38136"/>
                    <exon start="37854" stop="37659"/>
                    <exon start="36566" stop="36500"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSPEVHLYRCRLNHCFKQSHNKRNELIPRMALTNFILTVAGVSAVVLLMRSDVKQSASIFKRNVRQIRHWLEEESASAAKGIEKAKPKEISQKDIPKDDKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38170" e_stop="37683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38170" e_stop="37683" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38170" stop="37683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGA</gDNA_template>
            <first_frame> *  S  S  P  L  P  L  P  I  K  S  L  *  F  N  F  F  T  *  V  T  F  S  F  F  C  S  I  S  C  F  L  M  N  V  I  I  S  I  D  S  C  Y  K  I  F  V  F  C  C  C  C  F  F  F  L  *  A  Y  K  Q  Y  D  V  M  N  S  I  W  *  F  V  R  C  C  C  S  C  Y  F  R  N  C  L  L  L  H  S  N  *  I  T  V  R  S  Y  I  D  S  L  L  D  *  L  Q  G  F  K  Q  S  H  N  K  R  N  E  L  I  P  R  M  A  L  T  N  F  I  L  T  V  A  G  V  S  A  V  V  L  L  M  R  S  D  V  K  Q  S  A  S  I  F  K  R  N  V  R  Q  I  R  H  W  L   </first_frame>
            <second_frame>  E  V  H  L  Y  R  C  R  L  N  H  C  N  S  I  S  S  L  R  L  R  F  H  F  F  V  R  F  L  V  S  *  *  M  *  *  F  L  S  I  R  V  T  K  Y  L  C  F  V  V  V  A  F  F  F  C  K  L  I  N  N  M  M  L  *  I  R  Y  G  N  L  C  V  V  V  V  L  V  I  F  G  T  V  Y  F  Y  I  Q  I  E  S  L  Y  D  H  I  L  I  L  Y  L  I  N  C  K  V  L  S  N  L  T  I  K  E  T  N  *  S  P  E  W  R  *  R  T  L  Y  *  Q  L  R  E  *  A  L  W  F  Y  *  *  G  A  M  L  N  S  L  L  P  S  S  S  A  M  F  V  K  F  A  I  G  L  </second_frame>
            <third_frame>   K  F  T  S  T  A  A  D  *  I  T  V  I  Q  F  L  H  L  G  Y  V  F  I  F  L  F  D  F  L  F  L  N  E  C  D  N  F  Y  R  F  V  L  Q  N  I  C  V  L  L  L  L  L  F  F  F  V  S  L  *  T  I  *  C  Y  E  F  D  M  V  I  C  A  L  L  L  F  L  L  F  S  E  L  F  T  F  T  F  K  L  N  H  C  T  I  I  Y  *  F  S  T  *  L  I  A  R  F  *  A  I  S  Q  *  K  K  R  I  D  P  Q  N  G  V  N  E  L  Y  T  D  S  C  G  S  E  R  C  G  F  I  D  E  E  R  C  *  T  V  C  F  H  L  Q  A  Q  C  S  S  N  S  P  L  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="39845" PGL_stop="44247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39845" e_stop="40290"/>
            <exon e_start="41212" e_stop="41309"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41614" e_stop="41727"/>
            <exon e_start="43310" e_stop="43366"/>
            <exon e_start="43455" e_stop="43540"/>
            <exon e_start="43649" e_stop="44222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.533" e_score="0.964"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="39845" e_stop="40290" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.533">
            <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41212" e_stop="41309" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.953">
            <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41614" e_stop="41727" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43310" e_stop="43366" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43455" e_stop="43540" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.943">
            <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="43649" e_stop="44222" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39845" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39845" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39901" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="43739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39909" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="43720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39909" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43366"/>
              <exon start="43455" stop="43467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39909" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39909" stop="40285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39978" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43366"/>
              <exon start="43455" stop="43519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41238" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="43942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43322" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="44222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379801" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCCTTTGTGCGTATTATTACCAAAAAAAAATAAAATTGACGATGCTCGTGGGGCTCAAACTCAAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA : CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAG : ATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG : CTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAG : ATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG : GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG : TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAAT</gDNA_template>
            <first_frame> K  P  L  C  V  L  L  P  K  K  N  K  I  D  D  A  R  G  A  Q  T  Q  S  C  G  L  Y  L  W  P  H  A  L  Q  F  L  P  H  L  L  L  H  R  R  A  N  N  K  F  T  G  G  A  D  T  H  L  P  *  P  E  D  L  N  S  G  A  G  I  L  E  G  L  N  F  F  L  S  R  G  E  G  G  V  C  P  F  F  S  E  E  Y  F  Y  H  W  H  G  L  Y  T  W  *  *  G  G  S  P  P  G  E  D  I  E  V  V  A  V  V  I  S  S  I  K  V  C  *  T  A  H  T  A  Y  N  F  D  N  R  T  C  S  R  Y  S  G  S  R  Y  H :   I  L  C  *  *  L  V  G  T  N  R  Y  N  M  Y  I  Y  C  C  S  N  N  *  L  A  R  W  I  S  C  S  Q   : D  E  F  R  N  C  L  W  C  I  F  R  S  S  G  *  *   : A  N  G  C  C  H  I  D  L  I  V  H  Q  T  F  G  G  *  F  V  W  T  I  S  M  A  T  N  C  T  F  Y  C  Y  N  W  Q  G   : D  N  Y  V  C  S  *  R  M  G  G  F  S  G  W  *  T  F  R   : G  C  C  C  E  *  L  G  E  V  E  N  S  H  S  D  D  C  I  D  H  P  S  S  Y  *  R  *  Q  :  F  I  R  G  W  N  F  C  S  F  W  C  D  L  A  I  C  F  S  M  V  S  C  M  V  S  G  R  I  Y  E  K  D  I  E  S  I  V  D  V  E  I  M  A  N  D  H  S  H  F  G  S  F  Y  *  L  W  R  S  R  L  Y  T  S  *  S  M  I  L  Q  K  E  T  A  L  C  S  C  I  S  T  T  R  E  V  A  N  L  I  L  T  C  L  A  P  Y  L  S  R  V  L  W  L  *  Q  R  E  M  K  N  A  G  C  V  Q  R  L  L  F  H  F  I  L  *  P  Y  S  L  V  K  L  E  A  Q  *  E  Y  Y  Y  I  I  K  Y  M  E  F  A  I  S  I  V  I  D  S  D  R  K  N  L  Y  S  N  I  V  P  V  E  P  D  *  S  M  A  P  S  D  Q  Y  C  Y  T  H  C  S  N  C  L  S  C  N  K  </first_frame>
            <second_frame>  S  L  C  A  Y  Y  Y  Q  K  K  I  K  L  T  M  L  V  G  L  K  L  K  A  V  A  S  I  Y  G  H  M  P  Y  N  F  Y  R  T  F  S  S  T  A  A  P  T  T  N  L  P  V  V  P  T  H  I  Y  R  S  R  R  I  S  T  P  A  P  A  F  S  K  V  S  I  F  S  C  Q  G  E  K  E  E  Y  A  P  F  S  V  R  N  I  S  T  T  G  M  G  Y  T  P  G  N  K  E  D  H  H  R  E  K  T  L  R  S  S  P  S  S  S  A  P  S  K  S  A  K  L  L  T  L  P  T  I  L  T  I  G  R  V  A  A  I  P  V  L  V  T   : T  F  Y  V  D  S  W  W  G  P  T  A  T  T  C  I  F  I  A  A  A  I  T  D  W  L  D  G  Y  L  A  R  K  :  M  N  L  G  T  A  F  G  A  F  L  D  P  V  A  D  K  :  L  M  V  A  A  T  L  I  L  L  C  T  K  P  L  E  A  S  L  F  G  Q  F  P  W  L  L  T  V  P  S  I  A  I  I  G  R  E  :  I  T  M  S  A  V  R  E  W  A  A  S  Q  G  G  K  L  S  E  :  A  V  A  V  N  N  L  G  K  W  K  T  A  T  Q  M  T  A  L  T  I  L  L  L  T  R  D  S  S :   L  S  G  A  G  T  F  V  A  S  G  V  I  L  L  Y  V  S  A  W  L  A  V  W  S  L  V  V  Y  M  R  K  I  S  K  V  L  L  M  *  K  S  W  P  M  I  T  H  I  L  A  H  S  T  S  C  G  E  A  G  C  T  Q  A  D  P  *  F  C  K  R  K  L  P  F  A  V  A  S  R  L  R  G  K  L  L  T  *  F  *  H  A  S  P  H  I  Y  P  V  Y  F  G  C  D  R  E  K  *  K  M  L  A  V  F  N  V  C  F  S  T  S  F  F  N  H  I  L  *  *  N  W  R  L  N  R  N  I  T  I  S  L  N  T  W  N  L  R  Y  L  L  *  S  I  L  I  G  K  I  Y  T  Q  I  S  F  R  L  N  R  T  D  R  W  L  L  R  I  N  I  A  I  H  I  A  V  T  V  C  H  A  I  N </second_frame>
            <third_frame>   A  F  V  R  I  I  T  K  K  K  *  N  *  R  C  S  W  G  S  N  S  K  L  W  P  L  F  M  A  T  C  P  T  I  S  T  A  P  S  P  P  P  P  R  Q  Q  Q  I  Y  R  W  C  R  H  T  F  T  V  A  G  G  S  Q  L  R  R  R  H  S  R  R  S  Q  F  F  P  V  K  G  R  R  R  S  M  P  L  F  Q  *  G  I  F  L  P  L  A  W  A  I  H  L  V  I  R  R  I  T  T  G  R  R  H  *  G  R  R  R  R  H  Q  L  H  Q  S  L  L  N  C  S  H  C  L  Q  F  *  Q  S  D  V  *  P  L  F  R  F  S  L  P  :  H  S  M  L  I  A  G  G  D  Q  P  L  Q  H  V  Y  L  L  L  Q  Q  *  L  I  G  *  M  D  I  L  L  A  R :   *  I  *  E  L  P  L  V  H  F  *  I  Q  W  L  I  S :   *  W  L  L  P  H  *  S  Y  C  A  P  N  L  W  R  L  V  C  L  D  N  F  H  G  Y  *  L  Y  L  L  L  L  *  L  A  G  R :   *  L  C  L  Q  L  E  N  G  R  L  L  R  V  V  N  F  Q  R :   L  L  L  *  I  T  W  G  S  G  K  Q  P  L  R  *  L  H  *  P  S  F  F  L  L  E  I  A   : V  Y  Q  G  L  E  L  L  *  L  L  V  *  S  C  Y  M  F  Q  H  G  *  L  Y  G  L  W  S  Y  I  *  E  R  Y  R  K  Y  C  *  C  R  N  H  G  Q  *  S  L  T  F  W  L  I  L  L  A  V  E  K  Q  V  V  H  K  L  I  H  D  S  A  K  G  N  C  P  L  Q  L  H  L  D  Y  E  G  S  C  *  L  N  S  D  M  P  R  P  I  F  I  P  C  T  L  V  V  T  E  R  N  E  K  C  W  L  C  S  T  F  A  F  P  L  H  S  L  T  I  F  F  S  E  I  G  G  S  I  G  I  L  L  Y  H  *  I  H  G  I  C  D  I  Y  C  N  R  F  *  *  E  K  F  I  L  K  Y  R  S  G  *  T  G  L  I  D  G  S  F  G  S  I  L  L  Y  T  L  Q  *  L  F  V  M  Q  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39846" stop="40290"/>
                    <exon start="41212" stop="41309"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41614" stop="41727"/>
                    <exon start="43310" stop="43366"/>
                    <exon start="43455" stop="43540"/>
                    <exon start="43649" stop="43769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCAYYYQKKIKLTMLVGLKLKAVASIYGHMPYNFYRTFSSTAAPTTNLPVVPTHIYRSRRISTPAPAFSKVSIFSCQGEKEEYAPFSVRNISTTGMGYTPGNKEDHHREKTLRSSPSSSAPSKSAKLLTLPTILTIGRVAAIPVLVTTFYVDSWWGPTATTCIFIAAAITDWLDGYLARKMNLGTAFGAFLDPVADKLMVAATLILLCTKPLEASLFGQFPWLLTVPSIAIIGREITMSAVREWAASQGGKLSEAVAVNNLGKWKTATQMTALTILLLTRDSSLSGAGTFVASGVILLYVSAWLAVWSLVVYMRKISKVLLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42909" e_stop="43366"/>
            <exon e_start="43455" e_stop="43540"/>
            <exon e_start="43649" e_stop="44222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42909" e_stop="43366" e_length="458"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43455" e_stop="43540" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.943">
            <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="43649" e_stop="44222" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42909" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="43856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42937" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="43808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42938" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="43732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43322" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="44222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379801" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG : GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG : TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAAT</gDNA_template>
            <first_frame> L  L  *  N  M  Q  A  V  I  S  L  D  *  K  E  R  G  I  R  E  L  L  R  T  W  I  G  T  V  G  T  L  D  E  P  Y  C  S  L  D  F  F  R  L  L  S  F  A  *  Y  V  V  F  L  I  V  C  E  I  I  V  S  I  F  S  L  V  V  A  F  A  Q  G  A  I  S  F  F  P  I  *  Y  L  *  Y  D  T  L  W  Y  L  F  Q  I  Y  I  I  *  C  S  S  M  F  L  E  N  L  F  P  A  S  L  V  I  F  I  V  D  E  *  *  T  L  F  F  D  S  F  C  K  S  F  C  R  *  L  C  L  Q  L  E  N  G  R  L  L  R  V  V  N  F  Q  R :   L  L  L  *  I  T  W  G  S  G  K  Q  P  L  R  *  L  H  *  P  S  F  F  L  L  E  I  A   : V  Y  Q  G  L  E  L  L  *  L  L  V  *  S  C  Y  M  F  Q  H  G  *  L  Y  G  L  W  S  Y  I  *  E  R  Y  R  K  Y  C  *  C  R  N  H  G  Q  *  S  L  T  F  W  L  I  L  L  A  V  E  K  Q  V  V  H  K  L  I  H  D  S  A  K  G  N  C  P  L  Q  L  H  L  D  Y  E  G  S  C  *  L  N  S  D  M  P  R  P  I  F  I  P  C  T  L  V  V  T  E  R  N  E  K  C  W  L  C  S  T  F  A  F  P  L  H  S  L  T  I  F  F  S  E  I  G  G  S  I  G  I  L  L  Y  H  *  I  H  G  I  C  D  I  Y  C  N  R  F  *  *  E  K  F  I  L  K  Y  R  S  G  *  T  G  L  I  D  G  S  F  G  S  I  L  L  Y  T  L  Q  *  L  F  V  M  Q  *   </first_frame>
            <second_frame>  F  S  E  T  C  K  Q  *  S  A  *  I  E  K  K  E  E  F  E  S  S  *  E  H  G  L  E  L  W  V  L  L  M  N  L  I  V  H  L  I  F  F  D  Y  *  V  L  H  S  M  *  S  F  *  *  S  V  R  S  *  C  P  Y  L  A  W  *  S  L  L  L  K  V  R  Y  L  F  F  Q  Y  D  I  Y  D  M  T  L  F  G  T  F  F  K  Y  T  S  Y  D  A  L  P  C  S  S  K  I  F  S  L  H  H  *  L  F  S  L  W  M  S  D  K  H  C  F  L  I  H  F  A  N  L  F  V  D  N  Y  V  C  S  *  R  M  G  G  F  S  G  W  *  T  F  R   : G  C  C  C  E  *  L  G  E  V  E  N  S  H  S  D  D  C  I  D  H  P  S  S  Y  *  R  *  Q  :  F  I  R  G  W  N  F  C  S  F  W  C  D  L  A  I  C  F  S  M  V  S  C  M  V  S  G  R  I  Y  E  K  D  I  E  S  I  V  D  V  E  I  M  A  N  D  H  S  H  F  G  S  F  Y  *  L  W  R  S  R  L  Y  T  S  *  S  M  I  L  Q  K  E  T  A  L  C  S  C  I  S  T  T  R  E  V  A  N  L  I  L  T  C  L  A  P  Y  L  S  R  V  L  W  L  *  Q  R  E  M  K  N  A  G  C  V  Q  R  L  L  F  H  F  I  L  *  P  Y  S  L  V  K  L  E  A  Q  *  E  Y  Y  Y  I  I  K  Y  M  E  F  A  I  S  I  V  I  D  S  D  R  K  N  L  Y  S  N  I  V  P  V  E  P  D  *  S  M  A  P  S  D  Q  Y  C  Y  T  H  C  S  N  C  L  S  C  N  K  </second_frame>
            <third_frame>   S  L  K  H  A  S  S  D  Q  L  R  L  K  R  K  R  N  S  R  A  L  E  N  M  D  W  N  C  G  Y  S  *  *  T  L  L  F  T  *  F  F  S  I  I  K  F  C  I  V  C  S  L  S  D  S  L  *  D  H  S  V  H  I  *  P  G  S  R  F  C  S  R  C  D  I  F  F  S  N  M  I  F  M  I  *  H  S  L  V  P  F  S  N  I  H  H  M  M  L  F  H  V  P  R  K  S  F  P  C  I  I  S  Y  F  H  C  G  *  V  I  N  T  V  F  *  F  I  L  Q  I  F  L  *  I  T  M  S  A  V  R  E  W  A  A  S  Q  G  G  K  L  S  E  :  A  V  A  V  N  N  L  G  K  W  K  T  A  T  Q  M  T  A  L  T  I  L  L  L  T  R  D  S  S :   L  S  G  A  G  T  F  V  A  S  G  V  I  L  L  Y  V  S  A  W  L  A  V  W  S  L  V  V  Y  M  R  K  I  S  K  V  L  L  M  *  K  S  W  P  M  I  T  H  I  L  A  H  S  T  S  C  G  E  A  G  C  T  Q  A  D  P  *  F  C  K  R  K  L  P  F  A  V  A  S  R  L  R  G  K  L  L  T  *  F  *  H  A  S  P  H  I  Y  P  V  Y  F  G  C  D  R  E  K  *  K  M  L  A  V  F  N  V  C  F  S  T  S  F  F  N  H  I  L  *  *  N  W  R  L  N  R  N  I  T  I  S  L  N  T  W  N  L  R  Y  L  L  *  S  I  L  I  G  K  I  Y  T  Q  I  S  F  R  L  N  R  T  D  R  W  L  L  R  I  N  I  A  I  H  I  A  V  T  V  C  H  A  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43310" stop="43366"/>
                    <exon start="43455" stop="43540"/>
                    <exon start="43649" stop="43769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITMSAVREWAASQGGKLSEAVAVNNLGKWKTATQMTALTILLLTRDSSLSGAGTFVASGVILLYVSAWLAVWSLVVYMRKISKVLLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39909" e_stop="40290"/>
            <exon e_start="41212" e_stop="41710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.533" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39909" e_stop="40290" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.533">
            <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41212" e_stop="41710" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39909" stop="40285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39978" stop="40290"/>
              <exon start="41212" stop="41710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA : CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTG</gDNA_template>
            <first_frame> K  A  V  A  S  I  Y  G  H  M  P  Y  N  F  Y  R  T  F  S  S  T  A  A  P  T  T  N  L  P  V  V  P  T  H  I  Y  R  S  R  R  I  S  T  P  A  P  A  F  S  K  V  S  I  F  S  C  Q  G  E  K  E  E  Y  A  P  F  S  V  R  N  I  S  T  T  G  M  G  Y  T  P  G  N  K  E  D  H  H  R  E  K  T  L  R  S  S  P  S  S  S  A  P  S  K  S  A  K  L  L  T  L  P  T  I  L  T  I  G  R  V  A  A  I  P  V  L  V  T   : T  F  Y  V  D  S  W  W  G  P  T  A  T  T  C  I  F  I  A  A  A  I  T  D  W  L  D  G  Y  L  A  R  K  V  H  A  S  A  V  Q  *  N  H  F  F  S  N  Y  N  F  L  Y  F  N  F  Q  N  W  L  V  *  H  V  Q  M  N  L  G  T  A  F  G  A  F  L  D  P  V  A  D  K  V  F  S  L  Y  S  S  I  H  M  V  L  P  G  S  L  A  S  L  L  V  L  L  P  L  S  I  M  F  E  T  L  Q  H  N  C  L  *  *  K  S  R  H  F  L  I  Q  L  F  L  T  S  T  A  N  G  C  C  H  I  D  L  I  V  H  Q  T  F  G  G  *  F  V  W  T  I  S  M  A  T  N  C  T  F  Y   </first_frame>
            <second_frame>  K  L  W  P  L  F  M  A  T  C  P  T  I  S  T  A  P  S  P  P  P  P  R  Q  Q  Q  I  Y  R  W  C  R  H  T  F  T  V  A  G  G  S  Q  L  R  R  R  H  S  R  R  S  Q  F  F  P  V  K  G  R  R  R  S  M  P  L  F  Q  *  G  I  F  L  P  L  A  W  A  I  H  L  V  I  R  R  I  T  T  G  R  R  H  *  G  R  R  R  R  H  Q  L  H  Q  S  L  L  N  C  S  H  C  L  Q  F  *  Q  S  D  V  *  P  L  F  R  F  S  L  P  :  H  S  M  L  I  A  G  G  D  Q  P  L  Q  H  V  Y  L  L  L  Q  Q  *  L  I  G  *  M  D  I  L  L  A  R  Y  M  L  L  L  F  N  R  I  I  F  S  R  I  I  I  S  Y  I  S  T  F  K  I  G  W  F  D  T  S  R  *  I  *  E  L  P  L  V  H  F  *  I  Q  W  L  I  R  Y  F  L  F  I  L  Q  F  T  W  Y  Y  L  E  V  W  P  V  C  *  C  C  Y  H  Y  P  *  C  L  R  L  F  S  I  I  A  C  N  E  R  A  D  I  F  *  Y  N  S  S  *  L  Q  Q  L  M  V  A  A  T  L  I  L  L  C  T  K  P  L  E  A  S  L  F  G  Q  F  P  W  L  L  T  V  P  S  I  </second_frame>
            <third_frame>   S  C  G  L  Y  L  W  P  H  A  L  Q  F  L  P  H  L  L  L  H  R  R  A  N  N  K  F  T  G  G  A  D  T  H  L  P  *  P  E  D  L  N  S  G  A  G  I  L  E  G  L  N  F  F  L  S  R  G  E  G  G  V  C  P  F  F  S  E  E  Y  F  Y  H  W  H  G  L  Y  T  W  *  *  G  G  S  P  P  G  E  D  I  E  V  V  A  V  V  I  S  S  I  K  V  C  *  T  A  H  T  A  Y  N  F  D  N  R  T  C  S  R  Y  S  G  S  R  Y  H :   I  L  C  *  *  L  V  G  T  N  R  Y  N  M  Y  I  Y  C  C  S  N  N  *  L  A  R  W  I  S  C  S  Q  G  T  C  F  C  C  S  I  E  S  F  F  L  E  L  *  F  L  I  F  Q  L  S  K  L  A  G  L  T  R  P  D  E  F  R  N  C  L  W  C  I  F  R  S  S  G  *  *  G  I  F  S  L  F  F  N  S  H  G  I  T  W  K  F  G  Q  F  A  S  V  A  T  I  I  H  N  V  *  D  S  S  A  *  L  L  V  M  K  E  Q  T  F  F  D  T  T  L  L  D  F  N  S  *  W  L  L  P  H  *  S  Y  C  A  P  N  L  W  R  L  V  C  L  D  N  F  H  G  Y  *  L  Y  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39909" stop="40290"/>
                    <exon start="41212" stop="41333"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAVASIYGHMPYNFYRTFSSTAAPTTNLPVVPTHIYRSRRISTPAPAFSKVSIFSCQGEKEEYAPFSVRNISTTGMGYTPGNKEDHHREKTLRSSPSSSAPSKSAKLLTLPTILTIGRVAAIPVLVTTFYVDSWWGPTATTCIFIAAAITDWLDGYLARKVHASAVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43645" e_stop="44238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="43645" e_stop="44238" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43645" stop="44238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTT</gDNA_template>
            <first_frame> A  V  Y  Q  G  L  E  L  L  *  L  L  V  *  S  C  Y  M  F  Q  H  G  *  L  Y  G  L  W  S  Y  I  *  E  R  Y  R  K  Y  C  *  C  R  N  H  G  Q  *  S  L  T  F  W  L  I  L  L  A  V  E  K  Q  V  V  H  K  L  I  H  D  S  A  K  G  N  C  P  L  Q  L  H  L  D  Y  E  G  S  C  *  L  N  S  D  M  P  R  P  I  F  I  P  C  T  L  V  V  T  E  R  N  E  K  C  W  L  C  S  T  F  A  F  P  L  H  S  L  T  I  F  F  S  E  I  G  G  S  I  G  I  L  L  Y  H  *  I  H  G  I  C  D  I  Y  C  N  R  F  *  *  E  K  F  I  L  K  Y  R  S  G  *  T  G  L  I  D  G  S  F  G  S  I  L  L  Y  T  L  Q  *  L  F  V  M  Q  *  I  M  H  E  V  F </first_frame>
            <second_frame>  Q  F  I  R  G  W  N  F  C  S  F  W  C  D  L  A  I  C  F  S  M  V  S  C  M  V  S  G  R  I  Y  E  K  D  I  E  S  I  V  D  V  E  I  M  A  N  D  H  S  H  F  G  S  F  Y  *  L  W  R  S  R  L  Y  T  S  *  S  M  I  L  Q  K  E  T  A  L  C  S  C  I  S  T  T  R  E  V  A  N  L  I  L  T  C  L  A  P  Y  L  S  R  V  L  W  L  *  Q  R  E  M  K  N  A  G  C  V  Q  R  L  L  F  H  F  I  L  *  P  Y  S  L  V  K  L  E  A  Q  *  E  Y  Y  Y  I  I  K  Y  M  E  F  A  I  S  I  V  I  D  S  D  R  K  N  L  Y  S  N  I  V  P  V  E  P  D  *  S  M  A  P  S  D  Q  Y  C  Y  T  H  C  S  N  C  L  S  C  N  K  L  C  T  R  C   </second_frame>
            <third_frame>   S  L  S  G  A  G  T  F  V  A  S  G  V  I  L  L  Y  V  S  A  W  L  A  V  W  S  L  V  V  Y  M  R  K  I  S  K  V  L  L  M  *  K  S  W  P  M  I  T  H  I  L  A  H  S  T  S  C  G  E  A  G  C  T  Q  A  D  P  *  F  C  K  R  K  L  P  F  A  V  A  S  R  L  R  G  K  L  L  T  *  F  *  H  A  S  P  H  I  Y  P  V  Y  F  G  C  D  R  E  K  *  K  M  L  A  V  F  N  V  C  F  S  T  S  F  F  N  H  I  L  *  *  N  W  R  L  N  R  N  I  T  I  S  L  N  T  W  N  L  R  Y  L  L  *  S  I  L  I  G  K  I  Y  T  Q  I  S  F  R  L  N  R  T  D  R  W  L  L  R  I  N  I  A  I  H  I  A  V  T  V  C  H  A  I  N  Y  A  R  G  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="43454" e_stop="43540"/>
            <exon e_start="43649" e_stop="44247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43454" e_stop="43540" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.943">
            <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="43649" e_stop="44247" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43454" stop="43540"/>
              <exon start="43649" stop="44247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG : TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTTGTTTACAGA</gDNA_template>
            <first_frame> G  C  C  C  E  *  L  G  E  V  E  N  S  H  S  D  D  C  I  D  H  P  S  S  Y  *  R  *  Q  :  F  I  R  G  W  N  F  C  S  F  W  C  D  L  A  I  C  F  S  M  V  S  C  M  V  S  G  R  I  Y  E  K  D  I  E  S  I  V  D  V  E  I  M  A  N  D  H  S  H  F  G  S  F  Y  *  L  W  R  S  R  L  Y  T  S  *  S  M  I  L  Q  K  E  T  A  L  C  S  C  I  S  T  T  R  E  V  A  N  L  I  L  T  C  L  A  P  Y  L  S  R  V  L  W  L  *  Q  R  E  M  K  N  A  G  C  V  Q  R  L  L  F  H  F  I  L  *  P  Y  S  L  V  K  L  E  A  Q  *  E  Y  Y  Y  I  I  K  Y  M  E  F  A  I  S  I  V  I  D  S  D  R  K  N  L  Y  S  N  I  V  P  V  E  P  D  *  S  M  A  P  S  D  Q  Y  C  Y  T  H  C  S  N  C  L  S  C  N  K  L  C  T  R  C  L  F  T   </first_frame>
            <second_frame>  A  V  A  V  N  N  L  G  K  W  K  T  A  T  Q  M  T  A  L  T  I  L  L  L  T  R  D  S  S :   L  S  G  A  G  T  F  V  A  S  G  V  I  L  L  Y  V  S  A  W  L  A  V  W  S  L  V  V  Y  M  R  K  I  S  K  V  L  L  M  *  K  S  W  P  M  I  T  H  I  L  A  H  S  T  S  C  G  E  A  G  C  T  Q  A  D  P  *  F  C  K  R  K  L  P  F  A  V  A  S  R  L  R  G  K  L  L  T  *  F  *  H  A  S  P  H  I  Y  P  V  Y  F  G  C  D  R  E  K  *  K  M  L  A  V  F  N  V  C  F  S  T  S  F  F  N  H  I  L  *  *  N  W  R  L  N  R  N  I  T  I  S  L  N  T  W  N  L  R  Y  L  L  *  S  I  L  I  G  K  I  Y  T  Q  I  S  F  R  L  N  R  T  D  R  W  L  L  R  I  N  I  A  I  H  I  A  V  T  V  C  H  A  I  N  Y  A  R  G  V  C  L  Q  </second_frame>
            <third_frame>   L  L  L  *  I  T  W  G  S  G  K  Q  P  L  R  *  L  H  *  P  S  F  F  L  L  E  I  A   : V  Y  Q  G  L  E  L  L  *  L  L  V  *  S  C  Y  M  F  Q  H  G  *  L  Y  G  L  W  S  Y  I  *  E  R  Y  R  K  Y  C  *  C  R  N  H  G  Q  *  S  L  T  F  W  L  I  L  L  A  V  E  K  Q  V  V  H  K  L  I  H  D  S  A  K  G  N  C  P  L  Q  L  H  L  D  Y  E  G  S  C  *  L  N  S  D  M  P  R  P  I  F  I  P  C  T  L  V  V  T  E  R  N  E  K  C  W  L  C  S  T  F  A  F  P  L  H  S  L  T  I  F  F  S  E  I  G  G  S  I  G  I  L  L  Y  H  *  I  H  G  I  C  D  I  Y  C  N  R  F  *  *  E  K  F  I  L  K  Y  R  S  G  *  T  G  L  I  D  G  S  F  G  S  I  L  L  Y  T  L  Q  *  L  F  V  M  Q  *  I  M  H  E  V  F  V  Y  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43455" stop="43540"/>
                    <exon start="43649" stop="43769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVAVNNLGKWKTATQMTALTILLLTRDSSLSGAGTFVASGVILLYVSAWLAVWSLVVYMRKISKVLLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="48418" PGL_stop="48736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48418" e_stop="48736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48418" e_stop="48736" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48418" stop="48736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTAACGAATATTTCTCCGGTGGAGACTGCATTGGATTTGGCTTTAACAGAAAGTGCTTTTGCACTAAGGCTTGTTAATTAATTAATTAATTAATTAATTAGTGTCATGAAAATGACACTAAATTAATTTAATTAATTAGTTCATTAATCCATCTCTAAGTTAGTTTTGTTTTAGGCAATAATAAAATGTAGTAGTGTTTTTTTTCTTTTCTAAAGGGCATTATGCCCTTCAGGGTTGTAGTCTTTCTTCGAAATCTGTGTGAACATGAGGTGTTTTGTGCATCGATTGATTAGTAATTCAAGGGTTCTTTCTTTCTT</gDNA_template>
            <first_frame> P  *  R  I  F  L  R  W  R  L  H  W  I  W  L  *  Q  K  V  L  L  H  *  G  L  L  I  N  *  L  I  N  *  L  V  S  *  K  *  H  *  I  N  L  I  N  *  F  I  N  P  S  L  S  *  F  C  F  R  Q  *  *  N  V  V  V  F  F  F  F  S  K  G  H  Y  A  L  Q  G  C  S  L  S  S  K  S  V  *  T  *  G  V  L  C  I  D  *  L  V  I  Q  G  F  F  L  S  </first_frame>
            <second_frame>  R  N  E  Y  F  S  G  G  D  C  I  G  F  G  F  N  R  K  C  F  C  T  K  A  C  *  L  I  N  *  L  I  N  *  C  H  E  N  D  T  K  L  I  *  L  I  S  S  L  I  H  L  *  V  S  F  V  L  G  N  N  K  M  *  *  C  F  F  S  F  L  K  G  I  M  P  F  R  V  V  V  F  L  R  N  L  C  E  H  E  V  F  C  A  S  I  D  *  *  F  K  G  S  F  F  L </second_frame>
            <third_frame>   V  T  N  I  S  P  V  E  T  A  L  D  L  A  L  T  E  S  A  F  A  L  R  L  V  N  *  L  I  N  *  L  I  S  V  M  K  M  T  L  N  *  F  N  *  L  V  H  *  S  I  S  K  L  V  L  F  *  A  I  I  K  C  S  S  V  F  F  L  F  *  R  A  L  C  P  S  G  L  *  S  F  F  E  I  C  V  N  M  R  C  F  V  H  R  L  I  S  N  S  R  V  L  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="55884" PGL_stop="57491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55884" e_stop="56286"/>
            <exon e_start="57061" e_stop="57237"/>
            <exon e_start="57400" e_stop="57491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-only e_score="0.859"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="55884" e_stop="56286" e_length="403"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56287" i_stop="57060" i_length="774"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="57061" e_stop="57237" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57238" i_stop="57399" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="0.859">
            <gDNA_exon_boundary e_start="57400" e_stop="57491" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55884" stop="56286"/>
              <exon start="57061" stop="57237"/>
              <exon start="57400" stop="57491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAGTATGAGGTTCAAATCTGAAGAAGAGCTTTCGAAGCATATCACCTTGTGTGGTTTCAGGGAATTGCACTGTGAAAATGAGGGATGCAATGCCCGATTTAGTGCAGCTCAGCTGGAACTGCATGATTCAACATGTCCGTTCAAAATACTCCAATGCGAGCAGAAATGCCCAGAAACACTCATGAGGCGTGAAATGGACAGGCACTGTATAACTGTATGTCCAATGAAGCTTGCCAACTGCCCCTTCTATCCAGTAGGCTGTGTGTCTACTATTCCTCAATGCAAAACTGACCAACACCGTCTTGAGAATCTTCTGCCTCACTTGACCCACATCTTAAAACTTATTCATAAGGAAGCATCTTTCGAGGCTTTGAAGAAAAGGGCTGAACATTTGTTGGAG : GCATCATCACCTGGACGGCTGGCAGCTGCTCGTGATGCAAGATCATTAACAGTTGCAATCAAGCGTATTGATGCAAAGCTTGGACCTTTGGAAGCTGAGGAAATTAAAGAGGACAATGCAGATGACGCTGACTTGAAAGATGAAAAAAAGGATAGCACTGATCTATCCGCCAAAAAG : GATTGCTCTATTGACTTGTCTCATAATGATGAACAATCTCCACAGCATAACTCCTCAGCTTCACCGCACAAAACAGTCTCACCTGACAAATC</gDNA_template>
            <first_frame> L  Q  Y  E  V  Q  I  *  R  R  A  F  E  A  Y  H  L  V  W  F  Q  G  I  A  L  *  K  *  G  M  Q  C  P  I  *  C  S  S  A  G  T  A  *  F  N  M  S  V  Q  N  T  P  M  R  A  E  M  P  R  N  T  H  E  A  *  N  G  Q  A  L  Y  N  C  M  S  N  E  A  C  Q  L  P  L  L  S  S  R  L  C  V  Y  Y  S  S  M  Q  N  *  P  T  P  S  *  E  S  S  A  S  L  D  P  H  L  K  T  Y  S  *  G  S  I  F  R  G  F  E  E  K  G  *  T  F  V  G   : G  I  I  T  W  T  A  G  S  C  S  *  C  K  I  I  N  S  C  N  Q  A  Y  *  C  K  A  W  T  F  G  S  *  G  N  *  R  G  Q  C  R  *  R  *  L  E  R  *  K  K  G  *  H  *  S  I  R  Q  K   : G  L  L  Y  *  L  V  S  *  *  *  T  I  S  T  A  *  L  L  S  F  T  A  Q  N  S  L  T  *  Q  I </first_frame>
            <second_frame>  C  S  M  R  F  K  S  E  E  E  L  S  K  H  I  T  L  C  G  F  R  E  L  H  C  E  N  E  G  C  N  A  R  F  S  A  A  Q  L  E  L  H  D  S  T  C  P  F  K  I  L  Q  C  E  Q  K  C  P  E  T  L  M  R  R  E  M  D  R  H  C  I  T  V  C  P  M  K  L  A  N  C  P  F  Y  P  V  G  C  V  S  T  I  P  Q  C  K  T  D  Q  H  R  L  E  N  L  L  P  H  L  T  H  I  L  K  L  I  H  K  E  A  S  F  E  A  L  K  K  R  A  E  H  L  L  E  :  A  S  S  P  G  R  L  A  A  A  R  D  A  R  S  L  T  V  A  I  K  R  I  D  A  K  L  G  P  L  E  A  E  E  I  K  E  D  N  A  D  D  A  D  L  K  D  E  K  K  D  S  T  D  L  S  A  K  K  :  D  C  S  I  D  L  S  H  N  D  E  Q  S  P  Q  H  N  S  S  A  S  P  H  K  T  V  S  P  D  K   </second_frame>
            <third_frame>   A  V  *  G  S  N  L  K  K  S  F  R  S  I  S  P  C  V  V  S  G  N  C  T  V  K  M  R  D  A  M  P  D  L  V  Q  L  S  W  N  C  M  I  Q  H  V  R  S  K  Y  S  N  A  S  R  N  A  Q  K  H  S  *  G  V  K  W  T  G  T  V  *  L  Y  V  Q  *  S  L  P  T  A  P  S  I  Q  *  A  V  C  L  L  F  L  N  A  K  L  T  N  T  V  L  R  I  F  C  L  T  *  P  T  S  *  N  L  F  I  R  K  H  L  S  R  L  *  R  K  G  L  N  I  C  W  R :   H  H  H  L  D  G  W  Q  L  L  V  M  Q  D  H  *  Q  L  Q  S  S  V  L  M  Q  S  L  D  L  W  K  L  R  K  L  K  R  T  M  Q  M  T  L  T  *  K  M  K  K  R  I  A  L  I  Y  P  P  K  R :   I  A  L  L  T  C  L  I  M  M  N  N  L  H  S  I  T  P  Q  L  H  R  T  K  Q  S  H  L  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55885" stop="56286"/>
                    <exon start="57061" stop="57237"/>
                    <exon start="57400" stop="57489"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSMRFKSEEELSKHITLCGFRELHCENEGCNARFSAAQLELHDSTCPFKILQCEQKCPETLMRREMDRHCITVCPMKLANCPFYPVGCVSTIPQCKTDQHRLENLLPHLTHILKLIHKEASFEALKKRAEHLLEASSPGRLAAARDARSLTVAIKRIDAKLGPLEAEEIKEDNADDADLKDEKKDSTDLSAKKDCSIDLSHNDEQSPQHNSSASPHKTVSPDK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="70232" PGL_stop="61842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70232" e_stop="70046"/>
            <exon e_start="69084" e_stop="68934"/>
            <exon e_start="68664" e_stop="68588"/>
            <exon e_start="68504" e_stop="68446"/>
            <exon e_start="67820" e_stop="67737"/>
            <exon e_start="67614" e_stop="67522"/>
            <exon e_start="66765" e_stop="66685"/>
            <exon e_start="64866" e_stop="64735"/>
            <exon e_start="64626" e_stop="64524"/>
            <exon e_start="63158" e_stop="63064"/>
            <exon e_start="62958" e_stop="62893"/>
            <exon e_start="62802" e_stop="62718"/>
            <exon e_start="62443" e_stop="61842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70232" e_stop="70046" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.978">
            <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69084" e_stop="68934" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.792" acc_prob="0.892">
            <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68664" e_stop="68588" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68504" e_stop="68446" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.820" acc_prob="0.984">
            <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67820" e_stop="67737" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67614" e_stop="67522" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.873">
            <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66765" e_stop="66685" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64866" e_stop="64735" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64626" e_stop="64524" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63158" e_stop="63064" e_length="95"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62958" e_stop="62893" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62802" e_stop="62718" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="62717" i_stop="62444" i_length="274"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62443" e_stop="61842" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70232" stop="70046"/>
              <exon start="69084" stop="68934"/>
              <exon start="68664" stop="68588"/>
              <exon start="68504" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70219" stop="70046"/>
              <exon start="69084" stop="68934"/>
              <exon start="68664" stop="68588"/>
              <exon start="68504" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64735"/>
              <exon start="64626" stop="64524"/>
              <exon start="63158" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62718"/>
              <exon start="62443" stop="61842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70183" stop="70046"/>
              <exon start="69084" stop="68934"/>
              <exon start="68664" stop="68588"/>
              <exon start="68504" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70166" stop="70046"/>
              <exon start="69084" stop="68934"/>
              <exon start="68664" stop="68588"/>
              <exon start="68504" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70063" stop="70046"/>
              <exon start="69084" stop="68934"/>
              <exon start="68664" stop="68588"/>
              <exon start="68504" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64735"/>
              <exon start="64626" stop="64566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68491" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64735"/>
              <exon start="64626" stop="64524"/>
              <exon start="63158" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68488" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64735"/>
              <exon start="64626" stop="64524"/>
              <exon start="63158" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64735"/>
              <exon start="64626" stop="64524"/>
              <exon start="63158" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63121" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62718"/>
              <exon start="62443" stop="62020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63121" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62718"/>
              <exon start="62443" stop="62121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGTGTCTATACCTAAACTAACCAACCAAAATTCCAGTAGAGAAGGAACGAAAATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAG : AGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG : GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATG : GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT : GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG : GGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG : ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAG : ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA : GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG : GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG : GGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCA : AGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAG : CTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCATAGGCACAACAATATTTTTGAAGAGTCTATACGGAGAGACAAGTACATCTAAAAAAAATGTGAAATTGTGACGTTTTCATTATTTTATAGGCTTTTCTTGTGTTTGTAAACTCAAGTTGTACTCACATAAGATTGTTAACAATGTAATTTGTATAATACAAACATTTACGATTTCATA</gDNA_template>
            <first_frame> S  V  S  I  P  K  L  T  N  Q  N  S  S  R  E  G  T  K  M  A  S  S  M  L  T  K  Q  F  L  G  A  P  F  S  S  F  G  S  G  Q  Q  P  S  K  L  C  S  S  N  L  R  F  P  T  H  R  S  Q  P  K  R  L   : E  I  Q  A  A  G  N  T  F  G  N  Y  F  R  V  T  T  F  G  E  S  H  G  G  G  V  G  C  I  I  D  G  C  P  P  R  L  P  L  S  E  S  D  M  Q  V  E  L  D  R  R :   R  P  G  Q  S  R  I  T  T  P  R  K  E  T  D  T  C  K  I  S  S  G  T  A  D   : G  L  T  T  G  S  P  I  K  V  E  V  P  N  T  D  Q  R  G  N  :  D  Y  S  E  M  S  L  A  Y  R  P  S  H  A  D  A  T  Y  D  F  K  Y  G  V  R  S  V  Q  :  G  G  G  R  S  S  A  R  E  T  I  G  R  V  A  A  G  A  V  A  K  K  I  L  K  L  Y  S  G  T  E  :  I  L  A  Y  V  S  Q  V  H  N  V  V  L  P  E  D  L  V  D  N  Q  I  V  T  L  E  Q  :  I  E  S  N  I  V  R  C  P  N  P  E  Y  A  E  K  M  I  G  A  I  D  Y  V  R  V  R  G  D  S  V  G  G  V  V  T  C  I  V  R  N  V  P  R  :  G  L  G  T  P  V  F  D  K  L  E  A  E  L  A  K  A  C  M  S  L  P  A  T  K  G  F  E  F  G  S  G  F  A   : G  T  F  M  T  G  S  E  H  N  D  E  F  F  M  D  E  H  D  Q  I  R  T  K  T  N  R  S  G  G  I  Q  :  G  G  I  S  N  G  E  I  I  N  M  R  V  A  F  K  P  T  S  T  I  A  :  R  K  Q  H  T  V  S  R  D  K  H  E  T  E  L  I  A  R  G  R  H  D  P  C  V  V  P  R   : A  V  P  M  V  E  A  M  V  A  L  V  L  V  D  Q  L  M  T  Q  Y  A  Q  C  M  L  F  P  V  N  L  T  L  Q  E  P  L  Q  P  S  T  T  K  S  A  *  V  P  L  *  K  E  L  S  S  L  R  T  P  P  P  P  H  Y  N  F  S  L  H  G  F  S  H  F  W  H  S  T  T  F  G  E  *  N  F  L  L  K  E  V  I  L  N  T  *  R  V  I  L  L  N  R  E  M  Y  I  D  F  V  V  G  A  I  T  S  L  L  L  R  L  F  N  Y  V  F  C  Y  V  L  D  P  S  K  I  V  R  F  W  R  I  H  H  R  H  N  N  I  F  E  E  S  I  R  R  D  K  Y  I  *  K  K  C  E  I  V  T  F  S  L  F  Y  R  L  F  L  C  L  *  T  Q  V  V  L  T  *  D  C  *  Q  C  N  L  Y  N  T  N  I  Y  D  F  I </first_frame>
            <second_frame>  L  C  L  Y  L  N  *  P  T  K  I  P  V  E  K  E  R  K  W  L  H  L  C  L  P  N  S  F  S  G  L  H  F  Q  A  S  D  P  G  S  N  H  P  S  S  V  L  Q  T  S  D  S  L  L  T  D  H  S  P  N  D  *  :  R  Y  K  L  L  V  I  H  L  E  I  I  S  A  L  Q  R  L  E  N  L  T  V  V  V  S  V  V  *  L  M  D  V  P  L  D  S  H  S  Q  S  R  I  C  K  W  N  L  T  G   : G  G  Q  V  K  A  E  L  P  H  Q  E  K  R  L  I  L  A  K  Y  H  Q  A  L  L  M  :  V  *  L  R  D  L  Q  S  K  L  K  Y  P  T  L  T  R  E  E  M :   T  I  V  K  C  P  L  L  I  G  H  L  M  L  M  Q  L  M  T  S  S  M  E  L  D  Q  Y  R :   G  E  V  D  P  Q  Q  E  K  P  S  G  E  S  L  L  E  L  L  P  R  K  F  S  N  F  I  Q  E  L  R :   S  L  L  M  F  H  K  F  T  M  L  Y  F  Q  R  I  *  L  I  T  R  L  *  H  *  S  R :   L  K  A  I  L  F  V  A  R  T  L  N  M  Q  K  R  *  L  V  P  L  I  M  Y  E  *  G  G  I  L  L  V  V  S  *  L  A  L  L  E  M  F  H  E :   V  L  V  H  Q  S  L  I  N  L  K  L  S  W  L  K  L  A  C  H  Y  Q  Q  Q  R  V  L  S  L  E  V  A  L  Q  :  V  L  S  *  L  A  V  S  I  M  M  S  S  L  W  M  N  M  T  K  S  G  Q  K  P  I  D  L  V  V  S  R :   E  A  Y  Q  M  E  K  L  L  I  *  E  *  H  S  S  Q  L  L  Q  L  Q :   G  S  N  I  L  L  V  G  I  N  M  R  L  N  S  L  L  V  V  A  M  I  L  V  W  F  H  E  :  L  F  R  W  W  K  Q  W  S  P  *  C  S  W  I  S  *  *  L  N  M  H  N  V  C  Y  F  Q  S  I  L  H  Y  R  N  L  C  S  H  R  Q  P  S  Q  L  R  F  P  F  K  R  S  *  A  V  C  V  P  P  P  P  P  I  T  T  S  H  Y  M  A  S  H  I  S  G  I  L  L  R  L  E  S  E  I  F  C  *  K  K  L  S  S  T  H  R  E  L  Y  C  *  T  E  K  C  I  *  I  L  L  L  E  L  S  P  V  C  C  S  D  F  S  I  M  S  F  A  M  C  W  I  L  Q  K  *  C  V  F  G  E  S  I  I  G  T  T  I  F  L  K  S  L  Y  G  E  T  S  T  S  K  K  N  V  K  L  *  R  F  H  Y  F  I  G  F  S  C  V  C  K  L  K  L  Y  S  H  K  I  V  N  N  V  I  C  I  I  Q  T  F  T  I  S   </second_frame>
            <third_frame>   C  V  Y  T  *  T  N  Q  P  K  F  Q  *  R  R  N  E  N  G  F  I  Y  A  Y  Q  T  V  S  R  G  S  I  F  K  L  R  I  R  A  A  T  I  Q  A  L  F  F  K  P  P  I  P  Y  S  P  I  T  A  Q  T  T  R :   D  T  S  C  W  *  Y  I  W  K  L  F  P  R  Y  N  V  W  R  I  S  R  W  W  C  R  L  Y  N  *  W  M  S  P  S  T  P  T  L  R  V  G  Y  A  S  G  T  *  Q  E  :  E  A  R  S  K  P  N  Y  H  T  K  K  R  D  *  Y  L  Q  N  I  I  R  H  C  *  W :   F  D  Y  G  I  S  N  Q  S  *  S  T  Q  H  *  P  E  R  K   : *  L  *  *  N  V  P  C  L  *  A  I  S  C  *  C  N  L  *  L  Q  V  W  S  *  I  S  T   : G  G  R  *  I  L  S  K  R  N  H  R  E  S  R  C  W  S  C  C  Q  E  N  S  Q  T  L  F  R  N  *   : D  P  C  L  C  F  T  S  S  Q  C  C  T  S  R  G  F  S  *  *  P  D  C  D  T  R  A   : D  *  K  Q  Y  C  S  L  P  E  P  *  I  C  R  K  D  D  W  C  H  *  L  C  T  S  E  G  G  F  C  W  W  C  R  N  L  H  C  *  K  C  S  T   : R  S  W  Y  T  S  L  *  *  T  *  S  *  A  G  *  S  L  H  V  I  T  S  N  K  G  F  *  V  W  K  W  L  C  R :   Y  F  H  D  W  Q  *  A  *  *  *  V  L  Y  G  *  T  *  P  N  Q  D  K  N  Q  *  I  W  W  Y  P   : G  R  H  I  K  W  R  N  Y  *  Y  E  S  S  I  Q  A  N  F  Y  N  C   : K  E  A  T  Y  C  *  *  G  *  T  *  D  *  T  H  C  S  W  S  P  *  S  L  C  G  S  T  S :   C  S  D  G  G  S  N  G  R  P  S  A  R  G  S  V  D  D  S  I  C  T  M  Y  A  I  S  S  Q  S  Y  T  T  G  T  F  A  A  I  D  N  Q  V  S  L  G  S  P  L  K  G  A  E  Q  F  A  Y  P  P  P  P  P  L  Q  L  L  T  T  W  L  L  T  F  L  A  F  Y  Y  V  W  R  V  K  F  F  V  K  R  S  Y  P  Q  H  I  E  S  Y  I  V  E  Q  R  N  V  Y  R  F  C  C  W  S  Y  H  Q  F  V  A  P  T  F  Q  L  C  L  L  L  C  V  G  S  F  K  N  S  A  F  L  E  N  P  S  *  A  Q  Q  Y  F  *  R  V  Y  T  E  R  Q  V  H  L  K  K  M  *  N  C  D  V  F  I  I  L  *  A  F  L  V  F  V  N  S  S  C  T  H  I  R  L  L  T  M  *  F  V  *  Y  K  H  L  R  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70232" stop="70046"/>
                    <exon start="69084" stop="68934"/>
                    <exon start="68664" stop="68588"/>
                    <exon start="68504" stop="68446"/>
                    <exon start="67820" stop="67737"/>
                    <exon start="67614" stop="67522"/>
                    <exon start="66765" stop="66685"/>
                    <exon start="64866" stop="64735"/>
                    <exon start="64626" stop="64524"/>
                    <exon start="63158" stop="63064"/>
                    <exon start="62958" stop="62893"/>
                    <exon start="62802" stop="62718"/>
                    <exon start="62443" stop="62307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVSIPKLTNQNSSREGTKMASSMLTKQFLGAPFSSFGSGQQPSKLCSSNLRFPTHRSQPKRLEIQAAGNTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILKLYSGTEILAYVSQVHNVVLPEDLVDNQIVTLEQIESNIVRCPNPEYAEKMIGAIDYVRVRGDSVGGVVTCIVRNVPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFMTGSEHNDEFFMDEHDQIRTKTNRSGGIQGGISNGEIINMRVAFKPTSTIARKQHTVSRDKHETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMTQYAQCMLFPVNLTLQEPLQPSTTKSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70178" e_stop="70046"/>
            <exon e_start="69084" e_stop="68934"/>
            <exon e_start="68664" e_stop="68588"/>
            <exon e_start="68504" e_stop="68446"/>
            <exon e_start="67998" e_stop="67904"/>
            <exon e_start="67820" e_stop="67737"/>
            <exon e_start="67614" e_stop="67522"/>
            <exon e_start="66765" e_stop="66685"/>
            <exon e_start="64866" e_stop="64735"/>
            <exon e_start="64626" e_stop="64524"/>
            <exon e_start="63158" e_stop="63064"/>
            <exon e_start="62958" e_stop="62893"/>
            <exon e_start="62802" e_stop="62718"/>
            <exon e_start="62443" e_stop="62020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.978" e_score="0.925"/>
          <exon-intron don_prob="0.792" acc_prob="0.892" e_score="0.980"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="0.987"/>
          <exon-intron don_prob="0.820" acc_prob="0.487" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.984" e_score="0.905"/>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="0.964"/>
          <exon-intron don_prob="0.998" acc_prob="0.873" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="0.975"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.992"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.868"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="70178" e_stop="70046" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.978">
            <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="69084" e_stop="68934" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.792" acc_prob="0.892">
            <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="68664" e_stop="68588" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68504" e_stop="68446" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.820" acc_prob="0.487">
            <gDNA_intron_boundary i_start="68445" i_stop="67999" i_length="447"/>
          </intron>
          <exon e_serial="5" e_score="0.905">
            <gDNA_exon_boundary e_start="67998" e_stop="67904" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.615" acc_prob="0.984">
            <gDNA_intron_boundary i_start="67903" i_stop="67821" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.964">
            <gDNA_exon_boundary e_start="67820" e_stop="67737" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="67614" e_stop="67522" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.873">
            <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="66765" e_stop="66685" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="64866" e_stop="64735" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64626" e_stop="64524" e_length="103"/>
          </exon>
          <intron i_serial="10" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365"/>
          </intron>
          <exon e_serial="11" e_score="0.979">
            <gDNA_exon_boundary e_start="63158" e_stop="63064" e_length="95"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105"/>
          </intron>
          <exon e_serial="12" e_score="0.985">
            <gDNA_exon_boundary e_start="62958" e_stop="62893" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62802" e_stop="62718" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="62717" i_stop="62444" i_length="274"/>
          </intron>
          <exon e_serial="14" e_score="0.868">
            <gDNA_exon_boundary e_start="62443" e_stop="62020" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70178" stop="70046"/>
              <exon start="69084" stop="68934"/>
              <exon start="68664" stop="68588"/>
              <exon start="68504" stop="68446"/>
              <exon start="67998" stop="67904"/>
              <exon start="67820" stop="67738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64735"/>
              <exon start="64626" stop="64524"/>
              <exon start="63158" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63121" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62718"/>
              <exon start="62443" stop="62020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63121" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62718"/>
              <exon start="62443" stop="62121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAG : AGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG : GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATG : GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT : AGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTA : GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG : GGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG : ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAG : ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA : GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG : GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG : GGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCA : AGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAG : CTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCA</gDNA_template>
            <first_frame> M  A  S  S  M  L  T  K  Q  F  L  G  A  P  F  S  S  F  G  S  G  Q  Q  P  S  K  L  C  S  S  N  L  R  F  P  T  H  R  S  Q  P  K  R  L   : E  I  Q  A  A  G  N  T  F  G  N  Y  F  R  V  T  T  F  G  E  S  H  G  G  G  V  G  C  I  I  D  G  C  P  P  R  L  P  L  S  E  S  D  M  Q  V  E  L  D  R  R :   R  P  G  Q  S  R  I  T  T  P  R  K  E  T  D  T  C  K  I  S  S  G  T  A  D   : G  L  T  T  G  S  P  I  K  V  E  V  P  N  T  D  Q  R  G  N  :  S  I  A  S  *  Y  L  T  N  S  F  E  V  K  R  I  N  I  S  A  L  S  K  T  R  D  *  R  C  Y  A  * :   T  I  V  K  C  P  L  L  I  G  H  L  M  L  M  Q  L  M  T  S  S  M  E  L  D  Q  Y  R :   G  E  V  D  P  Q  Q  E  K  P  S  G  E  S  L  L  E  L  L  P  R  K  F  S  N  F  I  Q  E  L  R :   S  L  L  M  F  H  K  F  T  M  L  Y  F  Q  R  I  *  L  I  T  R  L  *  H  *  S  R :   L  K  A  I  L  F  V  A  R  T  L  N  M  Q  K  R  *  L  V  P  L  I  M  Y  E  *  G  G  I  L  L  V  V  S  *  L  A  L  L  E  M  F  H  E :   V  L  V  H  Q  S  L  I  N  L  K  L  S  W  L  K  L  A  C  H  Y  Q  Q  Q  R  V  L  S  L  E  V  A  L  Q  :  V  L  S  *  L  A  V  S  I  M  M  S  S  L  W  M  N  M  T  K  S  G  Q  K  P  I  D  L  V  V  S  R :   E  A  Y  Q  M  E  K  L  L  I  *  E  *  H  S  S  Q  L  L  Q  L  Q :   G  S  N  I  L  L  V  G  I  N  M  R  L  N  S  L  L  V  V  A  M  I  L  V  W  F  H  E  :  L  F  R  W  W  K  Q  W  S  P  *  C  S  W  I  S  *  *  L  N  M  H  N  V  C  Y  F  Q  S  I  L  H  Y  R  N  L  C  S  H  R  Q  P  S  Q  L  R  F  P  F  K  R  S  *  A  V  C  V  P  P  P  P  P  I  T  T  S  H  Y  M  A  S  H  I  S  G  I  L  L  R  L  E  S  E  I  F  C  *  K  K  L  S  S  T  H  R  E  L  Y  C  *  T  E  K  C  I  *  I  L  L  L  E  L  S  P  V  C  C  S  D  F  S  I  M  S  F  A  M  C  W  I  L  Q  K  *  C  V  F  G  E  S  I  </first_frame>
            <second_frame>  W  L  H  L  C  L  P  N  S  F  S  G  L  H  F  Q  A  S  D  P  G  S  N  H  P  S  S  V  L  Q  T  S  D  S  L  L  T  D  H  S  P  N  D  *  :  R  Y  K  L  L  V  I  H  L  E  I  I  S  A  L  Q  R  L  E  N  L  T  V  V  V  S  V  V  *  L  M  D  V  P  L  D  S  H  S  Q  S  R  I  C  K  W  N  L  T  G   : G  G  Q  V  K  A  E  L  P  H  Q  E  K  R  L  I  L  A  K  Y  H  Q  A  L  L  M  :  V  *  L  R  D  L  Q  S  K  L  K  Y  P  T  L  T  R  E  E  I :   A  L  H  P  D  I  *  Q  I  A  L  K  *  K  G  L  T  F  Q  P  Y  L  R  L  V  I  E  D  V  M  L   : R  L  *  *  N  V  P  C  L  *  A  I  S  C  *  C  N  L  *  L  Q  V  W  S  *  I  S  T   : G  G  R  *  I  L  S  K  R  N  H  R  E  S  R  C  W  S  C  C  Q  E  N  S  Q  T  L  F  R  N  *   : D  P  C  L  C  F  T  S  S  Q  C  C  T  S  R  G  F  S  *  *  P  D  C  D  T  R  A   : D  *  K  Q  Y  C  S  L  P  E  P  *  I  C  R  K  D  D  W  C  H  *  L  C  T  S  E  G  G  F  C  W  W  C  R  N  L  H  C  *  K  C  S  T   : R  S  W  Y  T  S  L  *  *  T  *  S  *  A  G  *  S  L  H  V  I  T  S  N  K  G  F  *  V  W  K  W  L  C  R :   Y  F  H  D  W  Q  *  A  *  *  *  V  L  Y  G  *  T  *  P  N  Q  D  K  N  Q  *  I  W  W  Y  P   : G  R  H  I  K  W  R  N  Y  *  Y  E  S  S  I  Q  A  N  F  Y  N  C   : K  E  A  T  Y  C  *  *  G  *  T  *  D  *  T  H  C  S  W  S  P  *  S  L  C  G  S  T  S :   C  S  D  G  G  S  N  G  R  P  S  A  R  G  S  V  D  D  S  I  C  T  M  Y  A  I  S  S  Q  S  Y  T  T  G  T  F  A  A  I  D  N  Q  V  S  L  G  S  P  L  K  G  A  E  Q  F  A  Y  P  P  P  P  P  L  Q  L  L  T  T  W  L  L  T  F  L  A  F  Y  Y  V  W  R  V  K  F  F  V  K  R  S  Y  P  Q  H  I  E  S  Y  I  V  E  Q  R  N  V  Y  R  F  C  C  W  S  Y  H  Q  F  V  A  P  T  F  Q  L  C  L  L  L  C  V  G  S  F  K  N  S  A  F  L  E  N  P  S </second_frame>
            <third_frame>   G  F  I  Y  A  Y  Q  T  V  S  R  G  S  I  F  K  L  R  I  R  A  A  T  I  Q  A  L  F  F  K  P  P  I  P  Y  S  P  I  T  A  Q  T  T  R :   D  T  S  C  W  *  Y  I  W  K  L  F  P  R  Y  N  V  W  R  I  S  R  W  W  C  R  L  Y  N  *  W  M  S  P  S  T  P  T  L  R  V  G  Y  A  S  G  T  *  Q  E  :  E  A  R  S  K  P  N  Y  H  T  K  K  R  D  *  Y  L  Q  N  I  I  R  H  C  *  W :   F  D  Y  G  I  S  N  Q  S  *  S  T  Q  H  *  P  E  R  K   : *  H  C  I  L  I  F  D  K  *  L  *  S  E  K  D  *  H  F  S  L  I  *  D  S  *  L  K  M  L  C  L  :  D  Y  S  E  M  S  L  A  Y  R  P  S  H  A  D  A  T  Y  D  F  K  Y  G  V  R  S  V  Q  :  G  G  G  R  S  S  A  R  E  T  I  G  R  V  A  A  G  A  V  A  K  K  I  L  K  L  Y  S  G  T  E  :  I  L  A  Y  V  S  Q  V  H  N  V  V  L  P  E  D  L  V  D  N  Q  I  V  T  L  E  Q  :  I  E  S  N  I  V  R  C  P  N  P  E  Y  A  E  K  M  I  G  A  I  D  Y  V  R  V  R  G  D  S  V  G  G  V  V  T  C  I  V  R  N  V  P  R  :  G  L  G  T  P  V  F  D  K  L  E  A  E  L  A  K  A  C  M  S  L  P  A  T  K  G  F  E  F  G  S  G  F  A   : G  T  F  M  T  G  S  E  H  N  D  E  F  F  M  D  E  H  D  Q  I  R  T  K  T  N  R  S  G  G  I  Q  :  G  G  I  S  N  G  E  I  I  N  M  R  V  A  F  K  P  T  S  T  I  A  :  R  K  Q  H  T  V  S  R  D  K  H  E  T  E  L  I  A  R  G  R  H  D  P  C  V  V  P  R   : A  V  P  M  V  E  A  M  V  A  L  V  L  V  D  Q  L  M  T  Q  Y  A  Q  C  M  L  F  P  V  N  L  T  L  Q  E  P  L  Q  P  S  T  T  K  S  A  *  V  P  L  *  K  E  L  S  S  L  R  T  P  P  P  P  H  Y  N  F  S  L  H  G  F  S  H  F  W  H  S  T  T  F  G  E  *  N  F  L  L  K  E  V  I  L  N  T  *  R  V  I  L  L  N  R  E  M  Y  I  D  F  V  V  G  A  I  T  S  L  L  L  R  L  F  N  Y  V  F  C  Y  V  L  D  P  S  K  I  V  R  F  W  R  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67921" stop="67904"/>
                    <exon start="67820" stop="67737"/>
                    <exon start="67614" stop="67522"/>
                    <exon start="66765" stop="66685"/>
                    <exon start="64866" stop="64735"/>
                    <exon start="64626" stop="64524"/>
                    <exon start="63158" stop="63064"/>
                    <exon start="62958" stop="62893"/>
                    <exon start="62802" stop="62718"/>
                    <exon start="62443" stop="62307"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMLCLDYSEMSLAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILKLYSGTEILAYVSQVHNVVLPEDLVDNQIVTLEQIESNIVRCPNPEYAEKMIGAIDYVRVRGDSVGGVVTCIVRNVPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFMTGSEHNDEFFMDEHDQIRTKTNRSGGIQGGISNGEIINMRVAFKPTSTIARKQHTVSRDKHETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMTQYAQCMLFPVNLTLQEPLQPSTTKSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70178" stop="70046"/>
                    <exon start="69084" stop="68934"/>
                    <exon start="68664" stop="68588"/>
                    <exon start="68504" stop="68446"/>
                    <exon start="67998" stop="67984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MASSMLTKQFLGAPFSSFGSGQQPSKLCSSNLRFPTHRSQPKRLEIQAAGNTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNSIAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="72854" PGL_stop="76733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72865" e_stop="73561"/>
            <exon e_start="74128" e_stop="74358"/>
            <exon e_start="74598" e_stop="75244"/>
            <exon e_start="75877" e_stop="76733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.426" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.935" e_score="0.945"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="72865" e_stop="73561" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.426">
            <gDNA_intron_boundary i_start="73562" i_stop="74127" i_length="566"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74128" e_stop="74358" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74359" i_stop="74597" i_length="239"/>
          </intron>
          <exon e_serial="3" e_score="0.945">
            <gDNA_exon_boundary e_start="74598" e_stop="75244" e_length="647"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75245" i_stop="75876" i_length="632"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="75877" e_stop="76733" e_length="857"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72865" stop="73414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73561"/>
              <exon start="74128" stop="74358"/>
              <exon start="74598" stop="74948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73543" stop="73561"/>
              <exon start="74128" stop="74358"/>
              <exon start="74598" stop="75092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74614" stop="75196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74816" stop="75244"/>
              <exon start="75877" stop="76095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74817" stop="75227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75107" stop="75244"/>
              <exon start="75877" stop="76631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75135" stop="75244"/>
              <exon start="75877" stop="76467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75205" stop="75244"/>
              <exon start="75877" stop="76662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75877" stop="76733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75931" stop="76662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76036" stop="76484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTG : GATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGAATGTGGTTGCTGGCTATGCGAAAGCTCAGATCCCTCTCGAGGTCATGTGGACAGATATTGATCATATGGATGGTTACAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTCGATACACTTCATCAGAATGGCCAGAAATTTGTTCTCATATTGGATCCAG : GGATCAGCATAAATAGCTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAG : CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGTGTTTTGGAGATGGGAGGTCTGTCAGTTCTAATTGGAAAAGAATTTACTATAGAGCTAACACTTTGAAAATT</gDNA_template>
            <first_frame> E  R  L  R  V  R  I  T  D  A  D  H  E  R  W  E  V  P  R  E  F  I  P  R  E  T  H  L  P  P  R  S  S  L  L  E  K  R  S  S  T  S  F  P  L  S  E  E  T  H  Y  F  H  T  D  T  V  S  D  L  A  F  T  L  Y  N  T  T  P  F  G  F  T  I  T  R  H  S  T  G  D  V  L  F  D  T  R  P  E  N  D  S  P  D  T  F  F  I  F  K  D  Q  Y  L  Q  L  S  S  S  L  P  A  N  R  S  S  I  Y  G  L  G  E  H  T  K  R  N  F  K  L  K  H  N  Q  T  L  T  L  W  N  A  D  I  A  S  A  N  A  D  L  N  L  Y  G  S  H  P  F  Y  M  D  V  R  S  H  P  G  G  G  T  S  H  G  V  L  L  F  N  S  N  G  M  D  I  V  Y  A  G  D  R  I  T  Y  K  V  I  G  G  V  V  D  L  Y  F  F  A  G  P  V  P  E  L  V  M  E  Q  Y  T  E  L  I  G  R  P  A  P  M  P  Y  W  S  F   : G  F  H  Q  C  R  Y  G  Y  K  D  I  T  E  I  K  N  V  V  A  G  Y  A  K  A  Q  I  P  L  E  V  M  W  T  D  I  D  H  M  D  G  Y  K  D  F  T  L  D  P  I  N  F  P  L  D  Q  M  K  K  F  V  D  T  L  H  Q  N  G  Q  K  F  V  L  I  L  D  P   : G  I  S  I  N  S  S  Y  E  T  Y  K  R  G  M  Q  A  D  V  F  I  K  R  N  G  V  P  Y  L  G  E  V  W  P  G  K  V  Y  F  P  D  F  I  N  P  R  G  R  V  F  W  S  N  E  I  K  I  F  H  D  L  L  P  I  D  G  L  W  L  D  M  N  E  L  S  N  F  I  S  S  P  P  S  P  S  S  T  L  D  N  P  P  Y  K  I  N  N  S  G  G  L  R  P  I  N  E  K  T  V  P  A  T  S  V  H  F  G  N  T  L  E  Y  D  V  H  N  L  Y  G  F  L  E  A  K  T  T  N  A  A  L  I  D  V  T  G  K  R  P  F  I  L  S  R  S  T  F  V  G  S  G  K  Y  T  A  H  W  T  G  D  N  A  A  T  W  D  D  L  A  Y  S  I  P  S  V  L  S  S  G  L  F  G  I  P  M  V  G  A  D  I  C  G  F  G  R  N  T  T  E  E  L  C  R  R  W  I  Q  :  L  G  A  F  Y  P  F  A  R  D  H  S  E  K  F  T  I  H  Q  E  L  Y  I  W  D  S  V  A  A  T  A  R  K  V  L  G  L  R  Y  R  L  L  P  Y  F  Y  T  L  M  F  E  A  H  T  K  G  I  P  I  A  R  P  L  F  F  S  F  P  E  D  A  N  T  Y  T  I  D  S  Q  F  L  I  G  K  G  L  M  I  S  P  V  L  T  S  G  A  V  S  V  N  A  Y  F  P  S  G  T  W  F  N  L  F  N  Y  S  N  Y  V  N  M  K  S  G  S  Y  I  S  L  D  A  P  P  D  H  I  N  V  H  L  R  E  G  N  I  V  V  M  Q  G  E  A  M  T  T  R  A  A  R  D  T  P  F  E  L  V  V  A  I  N  N  W  G  N  S  S  G  E  V  F  L  D  D  G  E  D  V  E  M  G  G  E  G  G  K  W  S  L  V  K  F  H  T  N  V  V  N  K  K  L  Y  L  R  S  N  V  V  N  E  E  F  A  L  S  K  N  W  R  I  H  K  V  T  F  L  G  L  K  K  G  V  S  K  I  N  A  Y  N  L  T  T  K  I  R  T  K  I  D  K  S  A  F  G  V  L  E  M  G  G  L  S  V  L  I  G  K  E  F  T  I  E  L  T  L  *  K   </first_frame>
            <second_frame>  S  V  *  E  S  E  L  R  M  L  I  M  K  D  G  K  F  L  E  N  L  S  L  G  K  L  I  Y  P  P  E  A  P  S  W  K  S  V  L  L  P  H  F  H  Y  Q  K  K  R  T  T  S  I  Q  T  P  F  R  T  L  L  S  L  S  T  T  P  P  L  L  A  L  L  S  R  A  T  P  Q  V  T  F  F  L  T  P  D  L  R  M  T  L  Q  T  R  S  S  S  S  R  I  S  T  F  N  C  P  L  H  C  Q  P  I  G  H  L  F  M  V  S  G  S  I  P  K  E  I  L  S  S  S  I  I  R  H  *  L  F  G  M  L  I  L  L  V  L  M  L  I  S  T  C  M  V  P  T  L  F  T  W  M  S  G  L  I  L  A  G  G  L  V  T  E  S  C  C  S  I  V  M  A  W  T  L  C  T  L  V  T  E  L  H  T  R  *  L  E  G  W  L  T  C  T  S  L  L  V  L  C  Q  S  W  S  W  N  S  T  Q  S  S  L  A  A  Q  R  P  C  H  T  G  L  L  :  D  F  T  N  A  V  M  V  I  K  T  L  L  K  L  R  M  W  L  L  A  M  R  K  L  R  S  L  S  R  S  C  G  Q  I  L  I  I  W  M  V  T  R  I  S  H  S  I  L  L  T  S  H  L  T  R  *  R  N  L  S  I  H  F  I  R  M  A  R  N  L  F  S  Y  W  I  Q  :  G  S  A  *  I  A  H  T  K  H  T  R  E  G  C  K  Q  T  F  S  S  N  A  M  V  S  L  I  L  A  K  F  G  L  E  K  S  T  F  L  I  S  *  I  P  E  G  E  S  S  G  V  M  K  S  R  F  S  M  T  F  S  P  S  M  V  S  G  L  T  *  M  S  Y  L  T  S  F  L  L  L  R  A  P  L  L  P  L  T  T  L  L  I  R  S  I  T  Q  E  A  Y  V  Q  *  T  R  R  L  S  Q  Q  H  Q  Y  I  L  G  I  P  *  S  T  M  F  I  T  S  T  D  S  W  K  L  K  R  P  M  L  L  *  S  M  L  L  E  K  D  H  L  Y  L  A  D  L  P  L  W  V  L  G  S  T  R  H  I  G  P  E  T  M  Q  P  H  G  M  T  W  L  I  V  F  P  A  F  *  V  L  D  C  L  G  F  P  W  L  E  L  I  Y  V  A  L  V  E  I  L  Q  K  N  Y  V  V  V  G  F  S :   *  V  H  F  I  P  L  Q  G  I  T  L  R  S  S  L  S  I  K  S  Y  I  S  G  I  Q  *  L  Q  Q  P  E  R  C  S  D  Y  G  I  V  S  Y  H  T  S  T  R  *  C  S  R  P  T  P  K  A  S  L  *  R  V  L  F  S  F  H  F  P  R  M  Q  T  L  T  P  S  T  L  S  F  S  S  V  R  G  *  *  Y  H  Q  Y  *  H  L  E  Q  F  Q  L  T  R  I  S  H  L  V  P  G  S  T  S  S  T  I  Q  T  T  S  T  *  S  P  V  A  T  S  V  *  T  R  L  L  I  I  S  M  C  I  S  E  R  E  T  L  W  *  C  K  E  K  Q  *  Q  Q  E  Q  P  G  I  L  R  L  N  L  L  S  R  S  T  T  G  E  I  V  Q  G  K  S  S  W  T  M  A  K  T  L  K  W  E  E  R  E  E  N  G  A  *  *  N  F  T  L  M  L  *  I  R  S  Y  I  *  D  Q  M  L  *  M  K  S  L  L  *  V  R  I  G  E  Y  T  K  *  L  F  L  D  *  K  K  G  *  V  K  *  M  H  I  I  *  L  L  K  L  E  Q  K  L  I  K  V  H  L  V  F  W  R  W  E  V  C  Q  F  *  L  E  K  N  L  L  *  S  *  H  F  E  N  </second_frame>
            <third_frame>   A  F  K  S  Q  N  Y  G  C  *  S  *  K  M  G  S  S  S  R  I  Y  P  S  G  N  S  F  T  P  P  K  L  P  L  G  K  A  F  F  Y  L  I  S  I  I  R  R  N  A  L  L  P  Y  R  H  R  F  G  P  C  F  H  S  L  Q  H  H  P  F  W  L  Y  Y  H  A  P  L  H  R  *  R  S  F  *  H  Q  T  *  E  *  L  S  R  H  V  L  H  L  Q  G  S  V  P  S  I  V  L  F  I  A  S  Q  *  V  I  Y  L  W  S  R  G  A  Y  Q  K  K  F  *  A  Q  A  *  S  D  I  D  S  L  E  C  *  Y  C  *  C  *  C  *  S  Q  L  V  W  F  P  P  F  L  H  G  C  Q  V  S  S  W  R  G  D  *  S  R  S  L  A  V  Q  *  *  W  H  G  H  C  V  R  W  *  Q  N  Y  I  Q  G  D  W  R  G  G  *  L  V  L  L  C  W  S  C  A  R  V  G  H  G  T  V  H  R  A  H  W  P  P  S  A  H  A  I  L  V  F  W :   I  S  P  M  P  L  W  L  *  R  H  Y  *  N  *  E  C  G  C  W  L  C  E  S  S  D  P  S  R  G  H  V  D  R  Y  *  S  Y  G  W  L  Q  G  F  H  T  R  S  Y  *  L  P  T  *  P  D  E  E  I  C  R  Y  T  S  S  E  W  P  E  I  C  S  H  I  G  S  R :   D  Q  H  K  *  L  I  R  N  I  Q  E  R  D  A  S  R  R  F  H  Q  T  Q  W  C  P  L  S  W  R  S  L  A  W  K  S  L  L  S  *  F  H  K  S  P  R  E  S  L  L  E  *  *  N  Q  D  F  P  *  P  S  P  H  R  W  S  L  A  *  H  E  *  V  I  *  L  H  F  F  S  S  E  P  L  F  Y  P  *  Q  P  S  L  *  D  Q  *  L  R  R  L  T  S  N  K  R  E  D  C  P  S  N  I  S  T  F  W  E  Y  L  R  V  R  C  S  *  P  L  R  I  P  G  S  *  N  D  Q  C  C  F  N  R  C  Y  W  K  K  T  I  Y  T  *  Q  I  Y  L  C  G  F  W  E  V  H  G  T  L  D  R  R  Q  C  S  H  M  G  *  L  G  L  *  Y  S  Q  R  F  E  F  W  T  V  W  D  S  H  G  W  S  *  Y  M  W  L  W  *  K  Y  Y  R  R  I  M  S  S  L  D  S   : A  R  C  I  L  S  L  C  K  G  S  L  *  E  V  H  Y  P  S  R  A  I  Y  L  G  F  S  S  C  N  S  Q  K  G  A  R  T  T  V  S  S  L  T  I  L  L  H  A  N  V  R  G  P  H  Q  R  H  P  Y  S  A  S  S  F  L  F  I  S  R  G  C  K  H  L  H  H  R  L  S  V  S  H  R  *  G  V  N  D  I  T  S  T  D  I  W  S  S  F  S  *  R  V  F  P  I  W  Y  L  V  Q  P  L  Q  L  F  K  L  R  Q  H  E  V  R  *  L  H  Q  S  R  R  A  S  *  S  Y  Q  C  A  S  Q  R  G  K  H  C  G  D  A  R  R  S  N  D  N  K  S  S  Q  G  Y  S  V  *  T  C  C  R  D  Q  Q  L  G  K  *  F  R  G  S  L  L  G  R  W  R  R  R  *  N  G  R  R  G  R  K  M  E  P  S  E  I  S  H  *  C  C  E  *  E  V  I  S  K  I  K  C  C  E  *  R  V  C  F  E  *  E  L  E  N  T  Q  S  D  F  S  W  T  E  K  R  G  E  *  N  K  C  I  *  F  D  Y  *  N  *  N  K  N  *  *  K  C  I  W  C  F  G  D  G  R  S  V  S  S  N  W  K  R  I  Y  Y  R  A  N  T  L  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72865" stop="73561"/>
                    <exon start="74128" stop="74358"/>
                    <exon start="74598" stop="75244"/>
                    <exon start="75877" stop="76728"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2424</number_coding_nucleotides>
                  <number_encoded_amino_acids>808</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERLRVRITDADHERWEVPREFIPRETHLPPRSSLLEKRSSTSFPLSEETHYFHTDTVSDLAFTLYNTTPFGFTITRHSTGDVLFDTRPENDSPDTFFIFKDQYLQLSSSLPANRSSIYGLGEHTKRNFKLKHNQTLTLWNADIASANADLNLYGSHPFYMDVRSHPGGGTSHGVLLFNSNGMDIVYAGDRITYKVIGGVVDLYFFAGPVPELVMEQYTELIGRPAPMPYWSFGFHQCRYGYKDITEIKNVVAGYAKAQIPLEVMWTDIDHMDGYKDFTLDPINFPLDQMKKFVDTLHQNGQKFVLILDPGISINSSYETYKRGMQADVFIKRNGVPYLGEVWPGKVYFPDFINPRGRVFWSNEIKIFHDLLPIDGLWLDMNELSNFISSPPSPSSTLDNPPYKINNSGGLRPINEKTVPATSVHFGNTLEYDVHNLYGFLEAKTTNAALIDVTGKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSIPSVLSSGLFGIPMVGADICGFGRNTTEELCRRWIQLGAFYPFARDHSEKFTIHQELYIWDSVAATARKVLGLRYRLLPYFYTLMFEAHTKGIPIARPLFFSFPEDANTYTIDSQFLIGKGLMISPVLTSGAVSVNAYFPSGTWFNLFNYSNYVNMKSGSYISLDAPPDHINVHLREGNIVVMQGEAMTTRAARDTPFELVVAINNWGNSSGEVFLDDGEDVEMGGEGGKWSLVKFHTNVVNKKLYLRSNVVNEEFALSKNWRIHKVTFLGLKKGVSKINAYNLTTKIRTKIDKSAFGVLEMGGLSVLIGKEFTIELTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72854" e_stop="73651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72854" e_stop="73651" e_length="798"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72854" stop="73651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72854" stop="73648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72865" stop="73414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAATTTCACATGACCTTAACTTTTGAATTTTGTTT</gDNA_template>
            <first_frame> L  R  R  K  S  V  *  E  S  E  L  R  M  L  I  M  K  D  G  K  F  L  E  N  L  S  L  G  K  L  I  Y  P  P  E  A  P  S  W  K  S  V  L  L  P  H  F  H  Y  Q  K  K  R  T  T  S  I  Q  T  P  F  R  T  L  L  S  L  S  T  T  P  P  L  L  A  L  L  S  R  A  T  P  Q  V  T  F  F  L  T  P  D  L  R  M  T  L  Q  T  R  S  S  S  S  R  I  S  T  F  N  C  P  L  H  C  Q  P  I  G  H  L  F  M  V  S  G  S  I  P  K  E  I  L  S  S  S  I  I  R  H  *  L  F  G  M  L  I  L  L  V  L  M  L  I  S  T  C  M  V  P  T  L  F  T  W  M  S  G  L  I  L  A  G  G  L  V  T  E  S  C  C  S  I  V  M  A  W  T  L  C  T  L  V  T  E  L  H  T  R  *  L  E  G  W  L  T  C  T  S  L  L  V  L  C  Q  S  W  S  W  N  S  T  Q  S  S  L  A  A  Q  R  P  C  H  T  G  L  L  V  R  N  Y  T  S  D  L  S  I  I  S  *  C  L  F  W  L  L  I  S  H  D  L  N  F  *  I  L  F </first_frame>
            <second_frame>  *  G  E  R  A  F  K  S  Q  N  Y  G  C  *  S  *  K  M  G  S  S  S  R  I  Y  P  S  G  N  S  F  T  P  P  K  L  P  L  G  K  A  F  F  Y  L  I  S  I  I  R  R  N  A  L  L  P  Y  R  H  R  F  G  P  C  F  H  S  L  Q  H  H  P  F  W  L  Y  Y  H  A  P  L  H  R  *  R  S  F  *  H  Q  T  *  E  *  L  S  R  H  V  L  H  L  Q  G  S  V  P  S  I  V  L  F  I  A  S  Q  *  V  I  Y  L  W  S  R  G  A  Y  Q  K  K  F  *  A  Q  A  *  S  D  I  D  S  L  E  C  *  Y  C  *  C  *  C  *  S  Q  L  V  W  F  P  P  F  L  H  G  C  Q  V  S  S  W  R  G  D  *  S  R  S  L  A  V  Q  *  *  W  H  G  H  C  V  R  W  *  Q  N  Y  I  Q  G  D  W  R  G  G  *  L  V  L  L  C  W  S  C  A  R  V  G  H  G  T  V  H  R  A  H  W  P  P  S  A  H  A  I  L  V  F  W  C  V  I  I  P  A  T  Y  L  L  F  H  S  V  Y  S  G  Y  *  F  H  M  T  L  T  F  E  F  C   </second_frame>
            <third_frame>   E  A  K  E  R  L  R  V  R  I  T  D  A  D  H  E  R  W  E  V  P  R  E  F  I  P  R  E  T  H  L  P  P  R  S  S  L  L  E  K  R  S  S  T  S  F  P  L  S  E  E  T  H  Y  F  H  T  D  T  V  S  D  L  A  F  T  L  Y  N  T  T  P  F  G  F  T  I  T  R  H  S  T  G  D  V  L  F  D  T  R  P  E  N  D  S  P  D  T  F  F  I  F  K  D  Q  Y  L  Q  L  S  S  S  L  P  A  N  R  S  S  I  Y  G  L  G  E  H  T  K  R  N  F  K  L  K  H  N  Q  T  L  T  L  W  N  A  D  I  A  S  A  N  A  D  L  N  L  Y  G  S  H  P  F  Y  M  D  V  R  S  H  P  G  G  G  T  S  H  G  V  L  L  F  N  S  N  G  M  D  I  V  Y  A  G  D  R  I  T  Y  K  V  I  G  G  V  V  D  L  Y  F  F  A  G  P  V  P  E  L  V  M  E  Q  Y  T  E  L  I  G  R  P  A  P  M  P  Y  W  S  F  G  A  *  L  Y  Q  R  L  I  Y  Y  F  I  V  F  I  L  V  T  N  F  T  *  P  *  L  L  N  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72856" stop="73569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAKERLRVRITDADHERWEVPREFIPRETHLPPRSSLLEKRSSTSFPLSEETHYFHTDTVSDLAFTLYNTTPFGFTITRHSTGDVLFDTRPENDSPDTFFIFKDQYLQLSSSLPANRSSIYGLGEHTKRNFKLKHNQTLTLWNADIASANADLNLYGSHPFYMDVRSHPGGGTSHGVLLFNSNGMDIVYAGDRITYKVIGGVVDLYFFAGPVPELVMEQYTELIGRPAPMPYWSFGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="95039" PGL_stop="94230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95039" e_stop="94230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="95039" e_stop="94230" e_length="810"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95039" stop="94454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94555" stop="94230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGACCACTCTTGCCAGAAAACTTTACAACTGTCCTAATATAACCTCTAGTTTCCCTACACGCGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAGGAATATCATAAAATCCATCCAAGGTCGCACTAAGGAAACTCTAGATTTGTTGGAAAGGATGACAGAAGGAGATCTTGAAATTTACATTCGTGATCTACTGAAAGAACGCAAATACCTTGTGGTGGTTGATGATGTATGGGAGAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATAGCAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTTGCTGAAAGGGCAGACAATAGAGGTTTTGTTCATAAACTTCGTTTTCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCGTAGGAAACTACTTGATGTTCGAGCAATGGTTCCAGAAATGGAAAGTCTAGCTAAGGATATGGTGGAAAAGTGTAGGGGCTTACCGCTTGCAATTGTTGTATTGAGCGGACTACTTTCACATAAAAAGGGGCTAAACGAATGGCAAAAGGTGAAAGATCACCTTTGGAAGAACATTAAAGAAGATAACTCTATTGAAATCTCTAATATACTATCCTTAAGCTACAATGATTTGTCAACTGCGCTTAAGCAGTGTTTTCTATACTTTGGTACTTTTCCAGAAGATCGAGTGGTCGGGGTTGATAACATAATACGATTGTGGATGGCGGAGGGTTTCATACCAAGAGGAGAAGAAAGAATGGAGGATGTCGCTGAAGGCTTCTTGAATGAACTGA</gDNA_template>
            <first_frame> A  R  P  L  L  P  E  N  F  T  T  V  L  I  *  P  L  V  S  L  H  A  L  G  Y  V  F  L  K  S  T  T  Q  W  I  F  L  G  I  S  *  N  P  S  K  V  A  L  R  K  L  *  I  C  W  K  G  *  Q  K  E  I  L  K  F  T  F  V  I  Y  *  K  N  A  N  T  L  W  W  L  M  M  Y  G  R  E  K  H  G  R  V  *  K  E  H  S  R  I  A  R  M  A  A  E  S  L  L  P  R  A  K  R  M  L  L  K  G  Q  T  I  E  V  L  F  I  N  F  V  F  *  V  K  K  K  V  G  I  S  F  V  G  N  Y  L  M  F  E  Q  W  F  Q  K  W  K  V  *  L  R  I  W  W  K  S  V  G  A  Y  R  L  Q  L  L  Y  *  A  D  Y  F  H  I  K  R  G  *  T  N  G  K  R  *  K  I  T  F  G  R  T  L  K  K  I  T  L  L  K  S  L  I  Y  Y  P  *  A  T  M  I  C  Q  L  R  L  S  S  V  F  Y  T  L  V  L  F  Q  K  I  E  W  S  G  L  I  T  *  Y  D  C  G  W  R  R  V  S  Y  Q  E  E  K  K  E  W  R  M  S  L  K  A  S  *  M  N  * </first_frame>
            <second_frame>  Q  D  H  S  C  Q  K  T  L  Q  L  S  *  Y  N  L  *  F  P  Y  T  R  L  D  M  C  F  S  R  V  Q  H  N  G  S  S  *  E  Y  H  K  I  H  P  R  S  H  *  G  N  S  R  F  V  G  K  D  D  R  R  R  S  *  N  L  H  S  *  S  T  E  R  T  Q  I  P  C  G  G  *  *  C  M  G  E  R  S  M  G  E  F  E  K  S  I  P  G  *  Q  E  W  Q  Q  S  H  Y  Y  H  A  Q  R  G  C  C  *  K  G  R  Q  *  R  F  C  S  *  T  S  F  S  K  S  R  R  K  L  G  S  L  S  *  E  T  T  *  C  S  S  N  G  S  R  N  G  K  S  S  *  G  Y  G  G  K  V  *  G  L  T  A  C  N  C  C  I  E  R  T  T  F  T  *  K  G  A  K  R  M  A  K  G  E  R  S  P  L  E  E  H  *  R  R  *  L  Y  *  N  L  *  Y  T  I  L  K  L  Q  *  F  V  N  C  A  *  A  V  F  S  I  L  W  Y  F  S  R  R  S  S  G  R  G  *  *  H  N  T  I  V  D  G  G  G  F  H  T  K  R  R  R  K  N  G  G  C  R  *  R  L  L  E  *  T   </second_frame>
            <third_frame>   K  T  T  L  A  R  K  L  Y  N  C  P  N  I  T  S  S  F  P  T  R  A  W  I  C  V  S  Q  E  Y  N  T  M  D  L  L  R  N  I  I  K  S  I  Q  G  R  T  K  E  T  L  D  L  L  E  R  M  T  E  G  D  L  E  I  Y  I  R  D  L  L  K  E  R  K  Y  L  V  V  V  D  D  V  W  E  R  E  A  W  E  S  L  K  R  A  F  P  D  S  K  N  G  S  R  V  I  I  T  T  R  K  E  D  V  A  E  R  A  D  N  R  G  F  V  H  K  L  R  F  L  S  Q  E  E  S  W  D  L  F  R  R  K  L  L  D  V  R  A  M  V  P  E  M  E  S  L  A  K  D  M  V  E  K  C  R  G  L  P  L  A  I  V  V  L  S  G  L  L  S  H  K  K  G  L  N  E  W  Q  K  V  K  D  H  L  W  K  N  I  K  E  D  N  S  I  E  I  S  N  I  L  S  L  S  Y  N  D  L  S  T  A  L  K  Q  C  F  L  Y  F  G  T  F  P  E  D  R  V  V  G  V  D  N  I  I  R  L  W  M  A  E  G  F  I  P  R  G  E  E  R  M  E  D  V  A  E  G  F  L  N  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95037" stop="94231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTTLARKLYNCPNITSSFPTRAWICVSQEYNTMDLLRNIIKSIQGRTKETLDLLERMTEGDLEIYIRDLLKERKYLVVVDDVWEREAWESLKRAFPDSKNGSRVIITTRKEDVAERADNRGFVHKLRFLSQEESWDLFRRKLLDVRAMVPEMESLAKDMVEKCRGLPLAIVVLSGLLSHKKGLNEWQKVKDHLWKNIKEDNSIEISNILSLSYNDLSTALKQCFLYFGTFPEDRVVGVDNIIRLWMAEGFIPRGEERMEDVAEGFLNEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="94316" PGL_stop="94956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94316" e_stop="94956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="94316" e_stop="94956" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94316" stop="94956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTATCAACCCCGACCACTCGATCTTCTGGAAAAGTACCAAAGTATAGAAAACACTGCTTAAGCGCAGTTGACAAATCATTGTAGCTTAAGGATAGTATATTAGAGATTTCAATAGAGTTATCTTCTTTAATGTTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCGTTTAGCCCCTTTTTATGTGAAAGTAGTCCGCTCAATACAACAATTGCAAGCGGTAAGCCCCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCATTGCTCGAACATCAAGTAGTTTCCTACGAAAGAGATCCCAACTTTCTTCTTGACTTAGAAAACGAAGTTTATGAACAAAACCTCTATTGTCTGCCCTTTCAGCAACATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGCTATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTCTCCCATACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAGTAGATCACGAATGTAAATTTCAAGATCTCCTTCTGTCATCCTTTCCAACAAATCTAGAGTTTCCTTAGTGCGACCTTGGATGGATTTTATGATATTCCTAAGAAGATCCATTGTGTTGTACTCTTG</gDNA_template>
            <first_frame> M  L  S  T  P  T  T  R  S  S  G  K  V  P  K  Y  R  K  H  C  L  S  A  V  D  K  S  L  *  L  K  D  S  I  L  E  I  S  I  E  L  S  S  L  M  F  F  Q  R  *  S  F  T  F  C  H  S  F  S  P  F  L  C  E  S  S  P  L  N  T  T  I  A  S  G  K  P  L  H  F  S  T  I  S  L  A  R  L  S  I  S  G  T  I  A  R  T  S  S  S  F  L  R  K  R  S  Q  L  S  S  *  L  R  K  R  S  L  *  T  K  P  L  L  S  A  L  S  A  T  S  S  L  R  V  V  I  M  T  L  L  P  F  L  L  S  G  N  A  L  F  K  L  S  H  A  S  L  S  H  T  S  S  T  T  T  R  Y  L  R  S  F  S  R  S  R  M  *  I  S  R  S  P  S  V  I  L  S  N  K  S  R  V  S  L  V  R  P  W  M  D  F  M  I  F  L  R  R  S  I  V  L  Y  S   </first_frame>
            <second_frame>  C  Y  Q  P  R  P  L  D  L  L  E  K  Y  Q  S  I  E  N  T  A  *  A  Q  L  T  N  H  C  S  L  R  I  V  Y  *  R  F  Q  *  S  Y  L  L  *  C  S  S  K  G  D  L  S  P  F  A  I  R  L  A  P  F  Y  V  K  V  V  R  S  I  Q  Q  L  Q  A  V  S  P  Y  T  F  P  P  Y  P  *  L  D  F  P  F  L  E  P  L  L  E  H  Q  V  V  S  Y  E  R  D  P  N  F  L  L  D  L  E  N  E  V  Y  E  Q  N  L  Y  C  L  P  F  Q  Q  H  P  L  C  A  W  *  *  *  L  C  C  H  S  C  Y  P  G  M  L  F  S  N  S  P  M  L  L  S  P  I  H  H  Q  P  P  Q  G  I  C  V  L  S  V  D  H  E  C  K  F  Q  D  L  L  L  S  S  F  P  T  N  L  E  F  P  *  C  D  L  G  W  I  L  *  Y  S  *  E  D  P  L  C  C  T  L  </second_frame>
            <third_frame>   V  I  N  P  D  H  S  I  F  W  K  S  T  K  V  *  K  T  L  L  K  R  S  *  Q  I  I  V  A  *  G  *  Y  I  R  D  F  N  R  V  I  F  F  N  V  L  P  K  V  I  F  H  L  L  P  F  V  *  P  L  F  M  *  K  *  S  A  Q  Y  N  N  C  K  R  *  A  P  T  L  F  H  H  I  L  S  *  T  F  H  F  W  N  H  C  S  N  I  K  *  F  P  T  K  E  I  P  T  F  F  L  T  *  K  T  K  F  M  N  K  T  S  I  V  C  P  F  S  N  I  L  F  A  R  G  N  N  D  S  A  A  I  L  A  I  R  E  C  S  F  Q  T  L  P  C  F  S  L  P  Y  I  I  N  H  H  K  V  F  A  F  F  Q  *  I  T  N  V  N  F  K  I  S  F  C  H  P  F  Q  Q  I  *  S  F  L  S  A  T  L  D  G  F  Y  D  I  P  K  K  I  H  C  V  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="106802" PGL_stop="107272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106802" e_stop="107272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="106802" e_stop="107272" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106802" stop="107197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106804" stop="107272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGTTATCAACCTTGACCACTTGATCTTCCGGGAAAATACCAAAGTAGAGAAAACACTGCTTGAGCGCAATTGACAAATCATTGTAGCTTAATGACAGTATGTTGGAGATTTCAATAGATTTATCTTCTTTTATGTTCTTCCAAAGGTGATGTTTAACCTTTTTCCATTCGTTTATCCCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCACTGATTGAACATCAAGTAGTTTCCTACAAAAGAGATCCCAACTTTCTTCTTGGCTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCATCTGCTCTTTCAGCGACATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGCCATCTGGGAATGCTCTCTTCAAACTCTCCCATGCTTCTT</gDNA_template>
            <first_frame> L  C  Y  Q  P  *  P  L  D  L  P  G  K  Y  Q  S  R  E  N  T  A  *  A  Q  L  T  N  H  C  S  L  M  T  V  C  W  R  F  Q  *  I  Y  L  L  L  C  S  S  K  G  D  V  *  P  F  S  I  R  L  S  P  F  Y  A  K  V  V  R  S  I  Q  Q  L  Q  E  V  S  L  Y  T  F  P  P  Y  P  *  L  D  F  P  F  L  E  P  L  I  E  H  Q  V  V  S  Y  K  R  D  P  N  F  L  L  G  L  G  N  E  V  Y  E  Q  N  L  C  H  L  L  F  Q  R  H  P  L  C  A  W  *  *  *  L  C  C  H  S  C  H  L  G  M  L  S  S  N  S  P  M  L  L </first_frame>
            <second_frame>  Y  V  I  N  L  D  H  L  I  F  R  E  N  T  K  V  E  K  T  L  L  E  R  N  *  Q  I  I  V  A  *  *  Q  Y  V  G  D  F  N  R  F  I  F  F  Y  V  L  P  K  V  M  F  N  L  F  P  F  V  Y  P  L  F  M  R  K  *  S  A  Q  Y  N  N  C  K  R  *  A  S  T  L  F  H  H  I  L  S  *  T  F  H  F  W  N  H  *  L  N  I  K  *  F  P  T  K  E  I  P  T  F  F  L  A  *  E  T  K  F  M  N  K  T  S  V  I  C  S  F  S  D  I  L  F  A  R  G  N  N  D  S  A  A  I  L  A  I  W  E  C  S  L  Q  T  L  P  C  F   </second_frame>
            <third_frame>   M  L  S  T  L  T  T  *  S  S  G  K  I  P  K  *  R  K  H  C  L  S  A  I  D  K  S  L  *  L  N  D  S  M  L  E  I  S  I  D  L  S  S  F  M  F  F  Q  R  *  C  L  T  F  F  H  S  F  I  P  F  L  C  E  S  S  P  L  N  T  T  I  A  R  G  K  P  L  H  F  S  T  I  S  L  A  R  L  S  I  S  G  T  T  D  *  T  S  S  S  F  L  Q  K  R  S  Q  L  S  S  W  L  R  K  R  S  L  *  T  K  P  L  S  S  A  L  S  A  T  S  S  L  R  V  V  I  M  T  L  L  P  F  L  P  S  G  N  A  L  F  K  L  S  H  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="107837" PGL_stop="107170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107837" e_stop="107170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="107837" e_stop="107170" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107837" stop="107170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGGCTTGCGCTTGCATATGTAGGAAGGAGAAGAAATTATACAATGTCTCCAAGGAGATTCAATCACTCAAGCAAAGAATCATGGATATATCTCGCAAACGAGATACTTATGGTATTACAAATATCAACTCAGGAGATCAAGGGCCAAGTAATCAGGTTACAACATTGAGGAGAACTACCTCATATGTGGATGACCACGATTACATTTTTGTTGGACTTCAGGATGTTGTACAAACATTGCTAGGTCAACTTCTCAAACCAGAGCCGCGGCGAACCGTCCTCTCCATTTATGGAATGGGGGGTTTAGGCAAGACCACTCTTGCCAGAAAACTTTACACCCGTCCTGATATACTCAACAGCTTCCATACACGCGCTTGGATATGTGTTTCGCAAGAGTACAACACTGCGGATCTTCTTAGGAATATCATAAAATCCATCCAAGGTCGCACCAAGGAAACTCTAGATTTGTTGGAAAGGATGACAGAAGGAGATCTAGAAATTTATCTTCGTGATCTATTAAAAGAACGCAAATACCTTGTGGTGGTTGATGATTTATGGAAGAAAGAAGCATGGGAGAGTTTGAAGAGAGCATTCCCAGATGGCAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTCGCTGAAAGAGCAGATGA</gDNA_template>
            <first_frame> L  K  A  C  A  C  I  C  R  K  E  K  K  L  Y  N  V  S  K  E  I  Q  S  L  K  Q  R  I  M  D  I  S  R  K  R  D  T  Y  G  I  T  N  I  N  S  G  D  Q  G  P  S  N  Q  V  T  T  L  R  R  T  T  S  Y  V  D  D  H  D  Y  I  F  V  G  L  Q  D  V  V  Q  T  L  L  G  Q  L  L  K  P  E  P  R  R  T  V  L  S  I  Y  G  M  G  G  L  G  K  T  T  L  A  R  K  L  Y  T  R  P  D  I  L  N  S  F  H  T  R  A  W  I  C  V  S  Q  E  Y  N  T  A  D  L  L  R  N  I  I  K  S  I  Q  G  R  T  K  E  T  L  D  L  L  E  R  M  T  E  G  D  L  E  I  Y  L  R  D  L  L  K  E  R  K  Y  L  V  V  V  D  D  L  W  K  K  E  A  W  E  S  L  K  R  A  F  P  D  G  K  N  G  S  R  V  I  I  T  T  R  K  E  D  V  A  E  R  A  D   </first_frame>
            <second_frame>  S  R  L  A  L  A  Y  V  G  R  R  R  N  Y  T  M  S  P  R  R  F  N  H  S  S  K  E  S  W  I  Y  L  A  N  E  I  L  M  V  L  Q  I  S  T  Q  E  I  K  G  Q  V  I  R  L  Q  H  *  G  E  L  P  H  M  W  M  T  T  I  T  F  L  L  D  F  R  M  L  Y  K  H  C  *  V  N  F  S  N  Q  S  R  G  E  P  S  S  P  F  M  E  W  G  V  *  A  R  P  L  L  P  E  N  F  T  P  V  L  I  Y  S  T  A  S  I  H  A  L  G  Y  V  F  R  K  S  T  T  L  R  I  F  L  G  I  S  *  N  P  S  K  V  A  P  R  K  L  *  I  C  W  K  G  *  Q  K  E  I  *  K  F  I  F  V  I  Y  *  K  N  A  N  T  L  W  W  L  M  I  Y  G  R  K  K  H  G  R  V  *  R  E  H  S  Q  M  A  R  M  A  A  E  S  L  L  P  R  A  K  R  M  S  L  K  E  Q  M  </second_frame>
            <third_frame>   Q  G  L  R  L  H  M  *  E  G  E  E  I  I  Q  C  L  Q  G  D  S  I  T  Q  A  K  N  H  G  Y  I  S  Q  T  R  Y  L  W  Y  Y  K  Y  Q  L  R  R  S  R  A  K  *  S  G  Y  N  I  E  E  N  Y  L  I  C  G  *  P  R  L  H  F  C  W  T  S  G  C  C  T  N  I  A  R  S  T  S  Q  T  R  A  A  A  N  R  P  L  H  L  W  N  G  G  F  R  Q  D  H  S  C  Q  K  T  L  H  P  S  *  Y  T  Q  Q  L  P  Y  T  R  L  D  M  C  F  A  R  V  Q  H  C  G  S  S  *  E  Y  H  K  I  H  P  R  S  H  Q  G  N  S  R  F  V  G  K  D  D  R  R  R  S  R  N  L  S  S  *  S  I  K  R  T  Q  I  P  C  G  G  *  *  F  M  E  E  R  S  M  G  E  F  E  E  S  I  P  R  W  Q  E  W  Q  Q  S  H  Y  Y  H  A  Q  R  G  C  R  *  K  S  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107837" stop="107172"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKACACICRKEKKLYNVSKEIQSLKQRIMDISRKRDTYGITNINSGDQGPSNQVTTLRRTTSYVDDHDYIFVGLQDVVQTLLGQLLKPEPRRTVLSIYGMGGLGKTTLARKLYTRPDILNSFHTRAWICVSQEYNTADLLRNIIKSIQGRTKETLDLLERMTEGDLEIYLRDLLKERKYLVVVDDLWKKEAWESLKRAFPDGKNGSRVIITTRKEDVAERAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="109939" PGL_stop="113773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109939" e_stop="110707"/>
            <exon e_start="113251" e_stop="113773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.997" e_score="0.986"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="109939" e_stop="110707" e_length="769"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="113251" e_stop="113773" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109939" stop="110636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109956" stop="110500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109956" stop="110466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109956" stop="110383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109960" stop="110364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109976" stop="110485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110030" stop="110661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110030" stop="110584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110070" stop="110707"/>
              <exon start="113251" stop="113289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110075" stop="110414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110157" stop="110707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110481" stop="110707"/>
              <exon start="113251" stop="113580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110482" stop="110707"/>
              <exon start="113251" stop="113556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110482" stop="110707"/>
              <exon start="113251" stop="113338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110560" stop="110707"/>
              <exon start="113251" stop="113773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113363" stop="113749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCAAACAACTCCTAATTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG : GTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGTATTATTCCATTCTTTACATTTGTG</gDNA_template>
            <first_frame> N  Q  T  T  P  N  S  F  P  F  H  Q  A  I  C  L  C  L  L  D  F  S  L  F  L  S  I  R  H  S  I  F  F  C  V  F  A  F  R  F  F  L  L  V  F  T  *  I  G  Y  N  P  F  E  F  S  T  L  Y  L  I  F  R  F  K  N  R  F  F  W  S  R  T  D  M  G  V  G  I  S  V  L  I  A  I  K  S  V  T  L  F  I  L  F  A  T  L  K  N  Y  G  Y  P  L  L  S  I  P  C  L  Y  A  S  L  V  S  L  L  V  A  L  A  A  N  P  S  I  D  L  P  I  L  L  G  K  N  T  D  G  T  F  P  I  W  S  L  V  M  F  S  P  Y  L  Y  F  V  R  G  F  S  A  L  R  R  M  K  S  G  E  P  P  Y  S  E  I  S  E  G  L  Y  V  G  G  W  P  C  S  L  D  K  L  P  P  G  N  P  A  I  I  D  C  T  C  E  M  P  R  M  L  E  F  T  G  N  H  A  F  L  C  I  P  T  W  D  T  R  S  P  Q  P  A  D  I  E  V  A  I  K  W  A  C  R  K  R  A  Q  K  I  P  V  F  I  H  C  A  Y   : G  H  G  R  S  V  A  V  M  C  A  L  L  V  A  L  G  L  A  E  D  W  K  N  A  E  K  L  I  K  E  K  R  P  Y  I  R  M  N  A  L  H  R  K  A  L  E  E  W  S  K  D  R  L  S  S  P  K  V  G  V  S  S  V  I  L  S  S  A  N  D  R  S  *  S  I  D  C  S  C  K  T  N  *  L  Y  R  *  L  A  V  C  L  H  F  *  L  H  T  I  L  D  D  *  D  F  C  F  F  L  S  S  R  S  V  L  S  *  Y  I  S  C  N  R  K  C  L  I  A  R  I  V  F  D  I  K  I  L  K  T  I  F  E  S  *  A  S  S  E  T  V  F  I  V  Y  Q  D  S  V  I  F  L  K  S  S  *  V  L  F  H  S  L  H  L   </first_frame>
            <second_frame>  T  K  Q  L  L  I  L  S  P  F  I  K  R  F  V  C  V  F  L  I  F  P  S  F  S  P  L  D  T  Q  F  S  F  A  Y  L  P  L  D  F  S  F  S  Y  L  L  E  L  G  I  T  H  L  N  F  Q  L  C  I  *  F  F  G  L  K  I  D  S  F  G  Q  E  L  I  W  V  L  E  F  L  C  L  *  P  *  S  Q  *  L  Y  S  Y  Y  L  Q  L  S  R  I  M  G  T  H  Y  C  Q  Y  L  V  C  M  H  H  W  Y  L  C  W  *  H  *  L  L  T  L  Q  L  I  F  Q  F  F  W  G  K  T  Q  M  G  H  S  Q  F  G  H  L  *  C  L  V  L  T  C  I  L  L  G  V  F  Q  L  *  E  E  *  R  V  G  N  L  H  I  V  R  F  L  K  G  C  M  L  G  V  G  L  V  H  L  I  N  C  H  L  V  I  L  L  L  L  I  V  L  V  R  C  L  G  C  W  S  L  L  E  I  M  H  F  C  V  F  Q  L  G  I  L  G  H  L  S  Q  L  I  *  R  L  L  L  S  G  L  V  E  K  E  L  R  R  Y  L  F  S  S  I  V  H  M  :  V  M  E  G  A  L  Q  S  C  V  H  C  *  *  L  L  V  *  Q  K  T  G  K  M  L  R  N  *  S  K  K  N  G  H  T  Y  E  *  T  L  C  I  A  K  L  *  R  N  G  R  R  I  V  S  L  P  Q  K  L  E  L  V  P  *  F  C  R  V  L  T  T  V  P  D  Q  L  T  A  V  A  R  P  I  N  Y  I  D  D  W  L  F  V  F  T  F  D  Y  T  L  Y  L  M  I  E  I  F  A  S  F  Y  Q  V  E  A  Y  S  L  D  I  F  L  V  I  E  N  V  *  L  P  G  L  C  L  T  *  K  F  L  K  L  F  L  N  P  K  H  L  V  K  L  Y  L  L  C  I  K  I  L  L  Y  S  *  K  A  A  K  Y  Y  S  I  L  Y  I  C  </second_frame>
            <third_frame>   P  N  N  S  *  F  F  P  L  S  S  S  D  L  S  V  S  S  *  F  F  P  L  S  L  H  *  T  L  N  F  L  L  R  I  C  L  *  I  F  P  S  R  I  Y  L  N  W  V  *  P  I  *  I  F  N  F  V  S  D  F  S  V  *  K  S  I  L  L  V  K  N  *  Y  G  C  W  N  F  C  A  Y  S  H  K  V  S  N  F  I  H  I  I  C  N  S  Q  E  L  W  V  P  I  I  V  N  T  L  F  V  C  I  I  G  I  F  V  G  S  I  S  C  *  P  F  N  *  S  S  N  S  F  G  E  K  H  R  W  D  I  P  N  L  V  T  C  D  V  *  S  L  L  V  F  C  *  G  F  F  S  F  E  K  N  E  E  W  G  T  S  I  *  *  D  F  *  R  V  V  C  W  G  L  A  L  F  T  *  *  I  A  T  W  *  S  C  Y  Y  *  L  Y  L  *  D  A  *  D  V  G  V  Y  W  K  S  C  I  F  V  Y  S  N  L  G  Y  *  V  T  S  A  S  *  Y  R  G  C  Y  *  V  G  L  *  K  K  S  S  E  D  T  C  F  H  P  L  C  I  W :   S  W  K  E  R  C  S  H  V  C  T  V  S  S  S  W  S  S  R  R  L  E  K  C  *  E  I  D  Q  R  K  T  A  I  H  T  N  E  R  S  A  S  Q  S  F  R  G  M  V  E  G  S  S  L  F  P  K  S  W  S  *  F  R  D  S  V  E  C  *  R  P  F  L  I  N  *  L  Q  L  Q  D  Q  L  I  I  *  M  I  G  C  L  S  S  L  L  I  T  H  Y  T  *  *  L  R  F  L  L  L  F  I  K  *  K  R  T  L  L  I  Y  F  L  *  *  K  M  F  D  C  Q  D  C  V  *  H  K  N  S  *  N  Y  F  *  I  L  S  I  *  *  N  C  I  Y  C  V  S  R  F  C  Y  I  L  K  K  Q  L  S  I  I  P  F  F  T  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110080" stop="110707"/>
                    <exon start="113251" stop="113471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGYNPFEFSTLYLIFRFKNRFFWSRTDMGVGISVLIAIKSVTLFILFATLKNYGYPLLSIPCLYASLVSLLVALAANPSIDLPILLGKNTDGTFPIWSLVMFSPYLYFVRGFSALRRMKSGEPPYSEISEGLYVGGWPCSLDKLPPGNPAIIDCTCEMPRMLEFTGNHAFLCIPTWDTRSPQPADIEVAIKWACRKRAQKIPVFIHCAYGHGRSVAVMCALLVALGLAEDWKNAEKLIKEKRPYIRMNALHRKALEEWSKDRLSSPKVGVSSVILSSANDRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="116400" PGL_stop="118395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116400" e_stop="117186"/>
            <exon e_start="118321" e_stop="118395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.145" acc_prob="0.981" e_score="0.913"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="116400" e_stop="117186" e_length="787"/>
          </exon>
          <intron i_serial="1" don_prob="0.145" acc_prob="0.981">
            <gDNA_intron_boundary i_start="117187" i_stop="118320" i_length="1134"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="118321" e_stop="118395" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116400" stop="116986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116400" stop="116905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116879" stop="117186"/>
              <exon start="118321" stop="118395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGATAATGGATACCATTTTCTCCCTCTCTCCATCTCCGCAACCCTTCTCCGCCGCTATTCTCACCGGGAACCACCACTCCACCACCGTCTTTTCCTCCCTCAGAAAATCCTCCTCCAGCTCCCCTGAAAAAATCCCTCCTCCATACACTCCTAAATTTACCAAAAAACCCCTCAAACATCTACTTAATTCCACCCCACCTCCTAGTCTCCATAACAAGCTAAGGCTATCCAAGAAGCTGTCACCACCCCCACCCCCACCCCCTACCCCGCCCCCAACTCCTCCACCATTTGTAGGAAAAAATGAGGAAATGCATAAAAGAGTTGAAAGTAAGGAAAAAGGAAGAATCTTTGTGGGGAATTTACCATTATGGATTAAAGAGAAGGAGGTTGCTGAGTTCTTTAGACAATTTGGGGCTATAAAGAATGTGATTTTGATAAAGGGTAGTAGTGGGAATGAAAAGAATATGGGTTTTGGGTTTTTGAAATATGAGGGTCCAAATGCTGAGAAAGCAGCTATGAAGGCAGTGGATTTTGATGGTGTTGAATTTCATGGAAGGGTGTTGACTGTGAAATTGGATGATGGGAGGAGATTGAAAGAGAAAATAGAGGAGAGGAACACGTGGCATGAGGCGAAGGAGGGGCCCAGGAGAGATTTCAAGAAGGTTCTGGAAATACAGCCGGAGAATTGGCAGGCGGTTGTTCGGGCTTTTGAGAGAATCAAGAAGGTGTTATGCTTACTGGAATACTGAAGTAATCTGCTTGCAGTGCTGTAGTCCCTTAAAAT : CCATCCAGGAAAGAATTTGGCTTGATGGTGAACTACTATGCAAGGAGGGGTGACATGCATCGTGCACGTGAAACC</gDNA_template>
            <first_frame> N  *  *  W  I  P  F  S  P  S  L  H  L  R  N  P  S  P  P  L  F  S  P  G  T  T  T  P  P  P  S  F  P  P  S  E  N  P  P  P  A  P  L  K  K  S  L  L  H  T  L  L  N  L  P  K  N  P  S  N  I  Y  L  I  P  P  H  L  L  V  S  I  T  S  *  G  Y  P  R  S  C  H  H  P  H  P  H  P  L  P  R  P  Q  L  L  H  H  L  *  E  K  M  R  K  C  I  K  E  L  K  V  R  K  K  E  E  S  L  W  G  I  Y  H  Y  G  L  K  R  R  R  L  L  S  S  L  D  N  L  G  L  *  R  M  *  F  *  *  R  V  V  V  G  M  K  R  I  W  V  L  G  F  *  N  M  R  V  Q  M  L  R  K  Q  L  *  R  Q  W  I  L  M  V  L  N  F  M  E  G  C  *  L  *  N  W  M  M  G  G  D  *  K  R  K  *  R  R  G  T  R  G  M  R  R  R  R  G  P  G  E  I  S  R  R  F  W  K  Y  S  R  R  I  G  R  R  L  F  G  L  L  R  E  S  R  R  C  Y  A  Y  W  N  T  E  V  I  C  L  Q  C  C  S  P  L  K   : S  I  Q  E  R  I  W  L  D  G  E  L  L  C  K  E  G  *  H  A  S  C  T  *  N  </first_frame>
            <second_frame>  T  D  N  G  Y  H  F  L  P  L  S  I  S  A  T  L  L  R  R  Y  S  H  R  E  P  P  L  H  H  R  L  F  L  P  Q  K  I  L  L  Q  L  P  *  K  N  P  S  S  I  H  S  *  I  Y  Q  K  T  P  Q  T  S  T  *  F  H  P  T  S  *  S  P  *  Q  A  K  A  I  Q  E  A  V  T  T  P  T  P  T  P  Y  P  A  P  N  S  S  T  I  C  R  K  K  *  G  N  A  *  K  S  *  K  *  G  K  R  K  N  L  C  G  E  F  T  I  M  D  *  R  E  G  G  C  *  V  L  *  T  I  W  G  Y  K  E  C  D  F  D  K  G  *  *  W  E  *  K  E  Y  G  F  W  V  F  E  I  *  G  S  K  C  *  E  S  S  Y  E  G  S  G  F  *  W  C  *  I  S  W  K  G  V  D  C  E  I  G  *  W  E  E  I  E  R  E  N  R  G  E  E  H  V  A  *  G  E  G  G  A  Q  E  R  F  Q  E  G  S  G  N  T  A  G  E  L  A  G  G  C  S  G  F  *  E  N  Q  E  G  V  M  L  T  G  I  L  K  *  S  A  C  S  A  V  V  P  *  N  :  P  S  R  K  E  F  G  L  M  V  N  Y  Y  A  R  R  G  D  M  H  R  A  R  E  T </second_frame>
            <third_frame>   L  I  M  D  T  I  F  S  L  S  P  S  P  Q  P  F  S  A  A  I  L  T  G  N  H  H  S  T  T  V  F  S  S  L  R  K  S  S  S  S  S  P  E  K  I  P  P  P  Y  T  P  K  F  T  K  K  P  L  K  H  L  L  N  S  T  P  P  P  S  L  H  N  K  L  R  L  S  K  K  L  S  P  P  P  P  P  P  P  T  P  P  P  T  P  P  P  F  V  G  K  N  E  E  M  H  K  R  V  E  S  K  E  K  G  R  I  F  V  G  N  L  P  L  W  I  K  E  K  E  V  A  E  F  F  R  Q  F  G  A  I  K  N  V  I  L  I  K  G  S  S  G  N  E  K  N  M  G  F  G  F  L  K  Y  E  G  P  N  A  E  K  A  A  M  K  A  V  D  F  D  G  V  E  F  H  G  R  V  L  T  V  K  L  D  D  G  R  R  L  K  E  K  I  E  E  R  N  T  W  H  E  A  K  E  G  P  R  R  D  F  K  K  V  L  E  I  Q  P  E  N  W  Q  A  V  V  R  A  F  E  R  I  K  K  V  L  C  L  L  E  Y  *  S  N  L  L  A  V  L  *  S  L  K  I :   H  P  G  K  N  L  A  *  W  *  T  T  M  Q  G  G  V  T  C  I  V  H  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116402" stop="117151"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMDTIFSLSPSPQPFSAAILTGNHHSTTVFSSLRKSSSSSPEKIPPPYTPKFTKKPLKHLLNSTPPPSLHNKLRLSKKLSPPPPPPPTPPPTPPPFVGKNEEMHKRVESKEKGRIFVGNLPLWIKEKEVAEFFRQFGAIKNVILIKGSSGNEKNMGFGFLKYEGPNAEKAAMKAVDFDGVEFHGRVLTVKLDDGRRLKEKIEERNTWHEAKEGPRRDFKKVLEIQPENWQAVVRAFERIKKVLCLLEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="119265" PGL_stop="119957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119265" e_stop="119957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="119265" e_stop="119957" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119265" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAGTAGAAAGTTAAACATATCTCTCTTGAACAATTTATGATTATTAATAAGCTTAATGTATGAGCACATATTTTCTTATAACATCACATGCAAGTCAAAACCCTCCAGTATACGGGCAAATATTTTTGTTAACCTCAGTAATTGTCACATTTTTTCTTATATATAAAGTCAGATGCAAGTGATGTTTCTCCGGTATACAGACAAGTATTTTTTGTTAACCTCAATAATCTAAAGTAACATGTTGGATTTTCATATTCAAAGTTCTAGGCATTGAAATCTCTATCATCATTATCAAAAAGTCATCTGATATTCATCATTCTTAGATTTGAGTTGTTTGCACCTAAACTTTCATATAGCATTTCAATGACCAGCAGACTCTAAAGTGATTTTTAATTTACCTTATCAAATATACTTAATGGCTAAGTCTAATAACTTAACAGCCAACTGGTACTGAATAATTGGGTAATCAACCACATTTAGGCTTTAACCTTTGCTCAGTGCCTTACACTGGGGGAGTATCTGTACTGTTCAATTCAGTTGTTTCTTTTCTTTGAAGTGTAGCCCCCTATGGCATCTAAACAACTTAGTCCTACTGCATGCTAGAAAATAAGAAACCTGAAAAAAAAAACTGAATTTCCATGATTGGTAAGTGTAGATGATAATGTCTTTAATGCGGAAAGGAATTGTCTT</gDNA_template>
            <first_frame> *  K  *  K  V  K  H  I  S  L  E  Q  F  M  I  I  N  K  L  N  V  *  A  H  I  F  L  *  H  H  M  Q  V  K  T  L  Q  Y  T  G  K  Y  F  C  *  P  Q  *  L  S  H  F  F  L  Y  I  K  S  D  A  S  D  V  S  P  V  Y  R  Q  V  F  F  V  N  L  N  N  L  K  *  H  V  G  F  S  Y  S  K  F  *  A  L  K  S  L  S  S  L  S  K  S  H  L  I  F  I  I  L  R  F  E  L  F  A  P  K  L  S  Y  S  I  S  M  T  S  R  L  *  S  D  F  *  F  T  L  S  N  I  L  N  G  *  V  *  *  L  N  S  Q  L  V  L  N  N  W  V  I  N  H  I  *  A  L  T  F  A  Q  C  L  T  L  G  E  Y  L  Y  C  S  I  Q  L  F  L  F  F  E  V  *  P  P  M  A  S  K  Q  L  S  P  T  A  C  *  K  I  R  N  L  K  K  K  T  E  F  P  *  L  V  S  V  D  D  N  V  F  N  A  E  R  N  C  L </first_frame>
            <second_frame>  K  S  R  K  L  N  I  S  L  L  N  N  L  *  L  L  I  S  L  M  Y  E  H  I  F  S  Y  N  I  T  C  K  S  K  P  S  S  I  R  A  N  I  F  V  N  L  S  N  C  H  I  F  S  Y  I  *  S  Q  M  Q  V  M  F  L  R  Y  T  D  K  Y  F  L  L  T  S  I  I  *  S  N  M  L  D  F  H  I  Q  S  S  R  H  *  N  L  Y  H  H  Y  Q  K  V  I  *  Y  S  S  F  L  D  L  S  C  L  H  L  N  F  H  I  A  F  Q  *  P  A  D  S  K  V  I  F  N  L  P  Y  Q  I  Y  L  M  A  K  S  N  N  L  T  A  N  W  Y  *  I  I  G  *  S  T  T  F  R  L  *  P  L  L  S  A  L  H  W  G  S  I  C  T  V  Q  F  S  C  F  F  S  L  K  C  S  P  L  W  H  L  N  N  L  V  L  L  H  A  R  K  *  E  T  *  K  K  K  L  N  F  H  D  W  *  V  *  M  I  M  S  L  M  R  K  G  I  V   </second_frame>
            <third_frame>   K  V  E  S  *  T  Y  L  S  *  T  I  Y  D  Y  *  *  A  *  C  M  S  T  Y  F  L  I  T  S  H  A  S  Q  N  P  P  V  Y  G  Q  I  F  L  L  T  S  V  I  V  T  F  F  L  I  Y  K  V  R  C  K  *  C  F  S  G  I  Q  T  S  I  F  C  *  P  Q  *  S  K  V  T  C  W  I  F  I  F  K  V  L  G  I  E  I  S  I  I  I  I  K  K  S  S  D  I  H  H  S  *  I  *  V  V  C  T  *  T  F  I  *  H  F  N  D  Q  Q  T  L  K  *  F  L  I  Y  L  I  K  Y  T  *  W  L  S  L  I  T  *  Q  P  T  G  T  E  *  L  G  N  Q  P  H  L  G  F  N  L  C  S  V  P  Y  T  G  G  V  S  V  L  F  N  S  V  V  S  F  L  *  S  V  A  P  Y  G  I  *  T  T  *  S  Y  C  M  L  E  N  K  K  P  E  K  K  N  *  I  S  M  I  G  K  C  R  *  *  C  L  *  C  G  K  E  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 338 chains have been computed
$ 
$ memory statistics:
$ 430616 bytes spliced alignments in total
$ 141 spliced alignments have been stored
$ 3054 bytes was the average size of a spliced alignment
$ 33504 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1595 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 360 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 18:28:37
-->
