<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 21:52:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337549" ref_strand="+" ref_description="SGN-U337549        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SWIRM domain-containing protein / DNA-binding family protein, contains similarity to SWI/SNF complex 170 KDa subunit (Homo sapiens) gi:1549241:gb:AAC50694; contains Pfam domain PF04433: SWIRM domain, PF00249: Myb-like DNA-binding domain | chr2:14236065-14238361 FORWARD | Aliases: F4P9.38, F4P9_38(evalue: 3e-49, score=172) genbank/nr: gi|30685774|ref|NP_180919.2| SWI/SNF complex subunit SW13 -related [Arabidopsis thaliana] gi|28393376|gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana] gi|28827566|gb|AAO50627.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana](evalue: 2e-47, score=172)">
      <seq>tcgatttacacttgtctaaattctaacgcttcaacatgcccgaatcaggcgaaatcaagtcacaggcagctaaatctgaccctcaaactacctctccgccaccgtcgcagcaacctcaaacggctgctttgccactaaagcgtccccaacaactggaatcgtccccaaacccaacaactccttcagtcaccgatcccaaagacgtcactcccaccactatctcctcccgtattactgaacctgatttcatctatattcccagttattcccgtaagtcccatctacttttcagcttttcttttcaaatttgcttctgtatttttagggtggaatggatatagatgattcgtgatacttaattagttcttcttcttcttttaggttggttttcatggaatagcattcatgaatgtgaggttcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgccatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2549" stop="774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2253" g_stop="1447" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="1074" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="849" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U337549" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2253" e_stop="1447"/>
          <exon e_start="1116" e_stop="1074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATA</genome_strand>
        <mrna_strand>TCGA-TTTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCCATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318783" ref_strand="+" ref_description="SGN-U318783        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein, low similarity to RRM-containing protein SEB-4 (Xenopus laevis) GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr1:28691023-28694015 REVERSE | Aliases: F15M4.25(evalue: 2e-99, score=359) genbank/nr: RNA-binding(evalue: 1e-113, score=413)">
      <seq>ttacttctcctgtatctacttaaatcaaattggatagtggattatggcgtatcaacagcagccaccagctcaaggttcaggttcctctgctgctggcagtggggttccattctttaattctccttttggggacaccaccttcactaaggtctttgttggaggtcttgcttgggaaactcagagtgacaccctcagacgattctttgagcagtttggtgaaatcctcgaggctgttgtcatcactgataaaaatactggccgatccaaaggctatggctttgtgactttccgggaccctgagtctacaaggagggcatgtgctgatcctgctccaattatcgatggaagacgagcaaattgtaatttggcttcgttagggcgacctcgtccttctgtgcaatttggacgtctgaggtcaccgactccatttccagcagggctaccagctgctcggggtgcttatgctggaagttttggctaccagcaaccggtttcttatggctaccagcaaggcttgatgtattctccttatgggtatgcgacatatggtacggattacgtttaccctcagggtgtttacaatccttatggaggtcaacagtaccttcctatatatggtgtacctggaactgttaatgcaacaatgtatccttacggccagctaagtcaggctgttcctggaagtcacagttatacgacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagccttgcaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagagctcaatgtctgagtcgctcctgatgattgagtgaggaaacatggaagttgcggattgcacttccttcaacatcatgtatctaggcccttgcattctgctggtttcaggatcactggcagagagtcatgcatttgagggatactggaataggtttctggctccctccttgtagcaataaactttgtaaaaaattcacatcagaatcaacctgtgattcagttatagtcaaaaactcccagaatatgcttttgggtgtgtagatagtcattgtcttgcgtgctggtgcaccatgcaccgtgtttaaaagtcttgtgcataaaaaacaaacaagctttagtcttaaacttgagattcattctgtaatttggatgttttattgatgattcttgaagcaagaagcttcagttattatcaccaaggttggtgtgacatgaccataatttgggtgcaaaagcagtgttgcatcatttatttgtgttttttaaagagagcagactttgccaatgaagtttatattattcattaacgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="8256" stop="2361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7956" g_stop="7677" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7369" g_stop="7246" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="404" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5871" g_stop="5742" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="534" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5246" g_stop="5210" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="571" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5078" g_stop="4841" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="809" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4502" g_stop="4393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="919" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1015" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3222" g_stop="2673" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1565" r_length="550" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1576" polyA_stop="1589"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U318783" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1565</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7956" e_stop="7677"/>
          <exon e_start="7369" e_stop="7246"/>
          <exon e_start="5871" e_stop="5742"/>
          <exon e_start="5246" e_stop="5210"/>
          <exon e_start="5078" e_stop="4841"/>
          <exon e_start="4502" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="2673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTTGTGAGTGTCCTTCAATGAATTATAGTACTACTTGTTTACTCAATTTGAAAAGGATGCAGTTTCTTTTTACTATCTTTTGTTTTCTTTCCGTTTTATGGATAAAAAAATGGTTCCTTTTTCAAATTCCATCTTAATCTCCCTTTTTTTTTTTACAACCAGGTGATATAACATCCCTTATTTGCACTGTCTACTGTCTGTCCCTTCTAGTTAAATAATTTATATTGTCTGTCTTTTACTTAGCCTGCATCTATGAATTTGGATAACTGAATGACATAATTTCCGCATGGTATTTTTTTGGAGGGTTTAGGTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTGGTATTGTAGCTTAATTTGGTTGAATGCTCTATCGTATTTCTAGAACAATAATAATGGTGTTGGATCATGGAGTTGCCTTTGCATACCTTGGGAGTCTGATGAGCTCTATATTATATGAAGCTTTACTGGATAGCTTGTTCTCCCTTCATTTTCAATTGTATTAAGCTTGTAGATTGCTTTTAATTTGTGCACATTTGCATGCACTCCCAGCTAATACAAGACAATGTATGATCCATCTTAAGCTATGAGCTATCATTGGTGGAGTTTTTTTTTTTTGGATGACCGTGGTGTCCGGGCCAGCTTTCGTGCACCTTGACTAAATCCACGGGATACCTGTTATCTCCCACCAGCAACAACATTGGTGGAGATATAATTGAGATGGTGAAATAGAAAATTGAGGGAGAAAGGTAAGAAAATGCATTTAAGTTTTTACAAGTAAAAAATAATTTGAGATGATAAGCCTTAGGATTGATACACAGTGGTGGAATGACGACAGTAGGAGGAGTAATAAGATGCTAAGATCTGGAAAATAGAGTTGAAGTTCTGTATTGTGATAATCTCTCATCAAACTGAAGTAGACAATGCATTAAACATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTGAGATCTCAGATGTTCAGCTTAAGATAATGACACTTAGCCATTTTATACCTTTTCAGGGCACATCCTACCCTGATAAAAGGGAAAGAACTGAAAGGAAAAAGTATGCTCGTTCTTTGAAGTGCATTAGCTTACTTCCACTTTATTTGGTACAGGACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGGGTAAGCTGTGTGTCACAGGCATTTATAGACTATGCAAGCACTGATTCATTTATGGGTTATAGTATAATCATAGAGGAAAACATCCAGTGACGAGGAGAAAGGAAGGTTCAATTAGTTAACGTTGGAGCATACTGTCACCTAATTTTTGCTATCGATTCTTGAAATGTCGTTGCATTTAGGATTATAAGTTTGGGGGAGGCCCAAGCTTGAGTCCCTTCATTATTGAATTTCATGAGTTTCTTATTTGCATGCGAACAAGTAGTTCCTCTCTTTTCACTTAGAAACAGGAAAAATTTCATCCTATTCACTGAGAGAGAACCATGTTACTTAATTTGCTGAATTTACTTTAAAAATAGTTAATTTAATTGATAGACCTTAGGACTTCATGTCAATCAGTCATTTTTTTGTACATTTTACCACGTACCTTATTTGTGTGTATTGCATTTAAAAGCACAACTTTTAGAAGATACAGTTACCTCTGTATTACTAATGCAGGTATGCGACATATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATTATCACCAAGGTTGGTGTGACATGACCATAATTTGGGTGCAAAAGCAGTGTTGCATCATTTATTTGTGTTTGGTACTCAGAGCAGACTTTGCCAATGAAGTTTATATTATTC</genome_strand>
        <mrna_strand>TTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTT...................................................................................................................................................................................................................................................................................................................GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGACATATGGTACGGATTACGTTTACCCTCAG...................................................................................................................................GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAG..................................................................................................................................................................................................................................................................................................................................................GTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATTATCACCAAGGTTGGTGTGACATGACCATAATTTGGGTGCAAAAGCAGTGTTGCATCATTTATTTGTGTTTTTTAAAGAGAGCAGACTTTGCCAATGAAGTTTATATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318784" ref_strand="+" ref_description="SGN-U318784        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein, low similarity to RRM-containing protein SEB-4 (Xenopus laevis) GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr1:28691023-28694015 REVERSE | Aliases: F15M4.25(evalue: 4e-34, score=142) genbank/nr: RNA-binding(evalue: 6e-41, score=171)">
      <seq>cggtttcttatggctaccagcaaggcttgatgtattctccttatgggtatgcgacatatggtacggattacgtttaccctcagggtgtttacaatccttatggaggtcaacagtaccttcctatatatggtgtacctggaactgttaatgcaacaatgtatccttacggccagctaagtcaggctgttcctggaagtcacagttatacgacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggcagatttcttttatttgtatcttatatatgcatgcatggtagccttgcatatcatcttatcattgacattaatctgcattccaagtttatcaagatgtctgacatctagaaaaaagtagtcccccacaaagataggggtaaggggctgcatataccccacccatcccagaccccacttgtggtatcacactgggtatgttgttgctgtatgacatgattgacatctagaaaacatgctggaacctcatctacttctgtagcctcagttccaagtcttacataagattgcaagtatgaagttgacagtatcattatgcaactgtttttttatttttaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagccttgcaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagagctcatgtctgagtcgctcctgatgattgagtgagaaacatggaagttgcggattgcacttccttcacatcatgtatctaggcccttgcattctgctggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="6087" stop="2789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5787" g_stop="5742" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5246" g_stop="5210" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="83" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5078" g_stop="4393" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="769" r_length="686" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="865" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3222" g_stop="3089" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="996" r_length="131" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U318784" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>999</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5787" e_stop="5742"/>
          <exon e_start="5246" e_stop="5210"/>
          <exon e_start="5078" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="3089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGGGTAAGCTGTGTGTCACAGGCATTTATAGACTATGCAAGCACTGATTCATTTATGGGTTATAGTATAATCATAGAGGAAAACATCCAGTGACGAGGAGAAAGGAAGGTTCAATTAGTTAACGTTGGAGCATACTGTCACCTAATTTTTGCTATCGATTCTTGAAATGTCGTTGCATTTAGGATTATAAGTTTGGGGGAGGCCCAAGCTTGAGTCCCTTCATTATTGAATTTCATGAGTTTCTTATTTGCATGCGAACAAGTAGTTCCTCTCTTTTCACTTAGAAACAGGAAAAATTTCATCCTATTCACTGAGAGAGAACCATGTTACTTAATTTGCTGAATTTACTTTAAAAATAGTTAATTTAATTGATAGACCTTAGGACTTCATGTCAATCAGTCATTTTTTTGTACATTTTACCACGTACCTTATTTGTGTGTATTGCATTTAAAAGCACAACTTTTAGAAGATACAGTTACCTCTGTATTACTAATGCAGGTATGCGACATATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTC</genome_strand>
        <mrna_strand>CGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGACATATGGTACGGATTACGTTTACCCTCAG...................................................................................................................................GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAGCTC-ATGTCTGAGTCGCTCCTGATGATTGAGTGA-GAAACATGGAAGTTGCGGATTGCACTTCCTTC-ACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346815" ref_strand="+" ref_description="SGN-U346815        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atgtctgctttttggggattttgtataattttatctttaagagattgtggtacatggtttaaaatgagaaataaagtgatgtgaacaggtctccttgatcagagactgaacatcatgaagtgcatgtaatcactaactgtgcttcagaacactctctagtcttttctcctgaagttacaagaattcatccctcatcacaaagtgacacaatgatcttttccccttcaataatttccttgtttgcgtggctgttttttttgtaacataacaggtgcagtatgttttgacaatcttttggcttggccctatacccatctaccttcttggtggatggcggagatcttctcttcgacttctccaaaattgattgtgtggaaatgaatacattgctagcacacttaatcaattacttatgtgacctttgcacaatcaatgtggagagctgtttccttggcttctcttgaacacattgataatctttgaaactagaagctgaaagttcctttacaggccatttatatgaaaaattgtaaagctgcctgagaattgttgtaaaaacatctataaggatcacctccttttctaaggatcctgcaaatatcgattcatggctggntatgtgtttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="6953" stop="5724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6653" g_stop="6024" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U346815" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6653" e_stop="6024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTG</genome_strand>
        <mrna_strand>ATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGNTATGTGTTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315798" ref_strand="+" ref_description="SGN-U315798        Tomato 200607 #1 [33 ESTs aligned] arabidopsis/peptide: AT2G33590.1 | Symbol: None | cinnamoyl-CoA reductase family, similar to cinnamoyl-CoA reductase from Pinus taeda (GI:17978649), Eucalyptus gunnii (GI:2058311) | chr2:14231344-14233678 FORWARD | Aliases: F4P9.36, F4P9_36 (evalue: 3e-103, score=372) genbank/nr: gi|15226134|ref|NP_180917.1| cinnamoyl-CoA reductase family [Arabidopsis thaliana] gi|25284026|pir||D84747 probable cinnamoyl-CoA reductase [imported] - Arabidopsis thaliana gi|2459446|gb|AAB80681.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana] gi|21536817|gb|AAM61149.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana] gi|21539439|gb|AAM53272.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana] gi|23197694|gb|AAN15374.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana](evalue: 2e-101, score=372)">
      <seq>tggcggccaaatcggccgaattgagtgtgtggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcagaaaagctgcagaagttgggttggcaatatagggcactggaggaaactctagttgatgcagttgaaagttacaaacaaaagggctttcttgattgaaaaaaagaccctttttttcttgttgtcgtactaaataattgctctgtatgtttttcaagttttcacacttgcaaactagtctggaataaggaggttacactatggtaccttttgagttctatttagttgttttgttttgctccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13032" stop="8936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12727" g_stop="12590" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="163" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="333" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="519" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="682" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="872" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9512" g_stop="9229" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="1156" r_length="284" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221">
            <donor d_prob="0.615" d_score="0.86"/>
            <acceptor a_prob="0.397" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9007" g_stop="9001" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1157" r_stop="1163" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1164" polyA_stop="1191"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U315798" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1138</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12727" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9229"/>
          <exon e_start="9007" e_stop="9001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAGGTACAGATTAACTCAACTTATTCAAGTATTTCTATTCCTAAAGCTTTAGTAGCTGGAGTTTCAATGAAGGTGGTTGGCGAAGGTACTTGACGTGTAGAGCGAGCTTTTGTTCAATTCAACATTTGGACAAGCTATTGCCTATAAACTGAACATCAAGACAAATTAAAGAACCTTCCCTAGAGAGAATAGGTACGATAGCACACATTTCTGTTGTGTGACAGAGAACAA</genome_strand>
        <mrna_strand>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAAAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAAAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCCCCAAAAAA.............................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335327" ref_strand="+" ref_description="SGN-U335327        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G33590.1 | Symbol: None | cinnamoyl-CoA reductase family, similar to cinnamoyl-CoA reductase from Pinus taeda (GI:17978649), Eucalyptus gunnii (GI:2058311) | chr2:14231344-14233678 FORWARD | Aliases: F4P9.36, F4P9_36 (evalue: 1e-08, score=57.4) genbank/nr: gi|15226134|ref|NP_180917.1| cinnamoyl-CoA reductase family [Arabidopsis thaliana] gi|25284026|pir||D84747 probable cinnamoyl-CoA reductase [imported] - Arabidopsis thaliana gi|2459446|gb|AAB80681.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana] gi|21536817|gb|AAM61149.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana] gi|21539439|gb|AAM53272.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana] gi|23197694|gb|AAN15374.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana](evalue: 8e-07, score=57.4)">
      <seq>tggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacggtgaatttctctccttttcactttatgcttctttaatgtgaatatagtgtcctatttcctgtgtatggtttaagagttgcaggggaaaaaagcagcttaaggaaattgggacttgtcttatgggtatttcatttcgtatttccagtgtgtttggttaagaatttggtctatttgatcaggtgtattgataaatattcttgtaacaaaccttgcccactagtaatattgtctggttcgggcctaggagcacacaactttaaaattcattgcctagagagattcttgaagaactgttagaccttagtgagcatttctatgccatacaagcctagactcaaatgagatattaatagtggaccgggctctcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="10412" stop="9266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10112" g_stop="9566" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U335327" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10112" e_stop="9566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACC</genome_strand>
        <mrna_strand>TGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATTAATAGTGGACCGGGCTCTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335328" ref_strand="+" ref_description="SGN-U335328        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G33600.1 | Symbol: None | cinnamoyl-CoA reductase family, similar to cinnamoyl-CoA reductase from Pinus taeda (GI:17978649), Eucalyptus gunnii (GI:2058311) | chr2:14233842-14235787 FORWARD | Aliases: F4P9.37, F4P9_37 (evalue: 2e-28, score=123) genbank/nr: gi|25140436|gb|AAN71762.1| cinnamoyl CoA reductase 2 [Solanum tuberosum](evalue: 4e-38, score=161)">
      <seq>gttgatgggagagaaatttcgagtgtgtgtaactggagcatgtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgagatagcagtggaatctttataaacagtctagaatgcacatgttattacttgttgaaagctattagaggtgtgtttctactcaatgaaggacgagatagtgaacttatattgggattttattatgatgtgctgttcaaaaagatcttttcaataagagacacgcttccctatttgagagcctaagacattgagaaatccagtgcatccaggagacattgtattgtgaccaagcattctgcatttctaggttgcttttggaacaactattcccaatgtgctctagttctgcaccaaaagaaagtaaaattcttcatatgttcaatgtcttgactgcaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctncaggcatgctatgaagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13008" stop="11369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12708" g_stop="12590" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="289" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="12071" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12070" g_stop="11669" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="691" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U335328" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12708" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="12070" e_stop="11669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACA</genome_strand>
        <mrna_strand>GTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCATGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG...........................................................................................................................................................................................................................................................................ATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTNCAGGCATGCTATGAAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313888" ref_strand="+" ref_description="SGN-U313888        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | DEAD/DEAH box helicase, putative, RNA helicase, Mus musculus, PIR:I49731 | chr3:19698765-19701639 FORWARD | Aliases: T4D2.40(evalue: 4e-37, score=151) genbank/nr: DEAD/DEAH(evalue: 2e-40, score=168)">
      <seq>aaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcggggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacatgagagtccaacagagccagatcatgaggtatacttgcatcggattggtagagcaggacgttttggacgcaaaggtgcgatattcaacttgctgtgcagtgaccgagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagattccctcatggaatagtgaagaagactttgaaaatgctctgaagatagctggcttgctgtaagcccgagtatgaatgttggttatattcatagacttcgagtagaactacactggctggtgatgacatttgtatcgttgacagagcagcgctccggagaggcttttcttcttgattgctctcatgcttcacttaccatttctagtgttataacttctcaaaaacatgcttaatctccccatgctaaatagaattaacacttttaaaaggaacatgtaaagaaaaacaattatattttaaacacaacagtgcaaatgattgaagaacttcgctatccagtgagcaaaaacagcagccaaagtgacctcaaactccggtagggctcaaagaaccaatgaaagaaataccaatcacaaccggtacccgaatcgtccccaaccccttatcatttgtttctctttttctgtattagttatttgcttcttttacttactgcctttatgactctattatttcacttcctatttattttattaagttattttggtgtcttctggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="15777" stop="13524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15477" g_stop="15395" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="195" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14910" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="281" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14557" g_stop="14553" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="284" r_length="3" r_score="0.600"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14552" i_stop="14380" i_length="173">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14379" g_stop="13825" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="839" r_length="555" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="840" polyA_stop="857"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U313888" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15477" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14910"/>
          <exon e_start="14557" e_stop="14553"/>
          <exon e_start="14379" e_stop="13825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACATTAGGCTCAAGTTAGTTGTTTCATGTTGGTTATGCAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAG-CCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</genome_strand>
        <mrna_strand>AAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG................................................................................................................................................................................................................................................................................................................................................................AT-T-.............................................................................................................................................................................CCCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGAGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCTTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGAAAGAAATACCAATCACAACCGGT-ACCCGAATCGTCCCCAACCCCTTATCATTTGTTTCTCTTTTTCTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313887" ref_strand="+" ref_description="SGN-U313887        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | DEAD/DEAH box helicase, putative, RNA helicase, Mus musculus, PIR:I49731 | chr3:19698765-19701639 FORWARD | Aliases: T4D2.40(evalue: 8e-49, score=189) genbank/nr: gi|15982881|gb|AAL09787.1| AT3g53110/T4D2_40 [Arabidopsis thaliana](evalue: 4e-47, score=189)">
      <seq>tccaatggccgacgcttacattacctccactgccaccagtagcaccgtcgcttctacgacagcaaacccacccgaatccaaaagttgggcagaccaagccgacgagatcgatcaagctgagcagtcttccgcttctaatgaggacgctgctgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaactccactctctctgatccggaagattccagcatagaagcggttacgtctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataacggttctggtaaaactacttgctttgtgcttgggatgttgagtcgaattgatccaaagcttgctgcccctcaagctctctgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19330" stop="18101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19030" g_stop="18790" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18401" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="510" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U313887" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19030" e_stop="18790"/>
          <exon e_start="18669" e_stop="18401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</genome_strand>
        <mrna_strand>TCCAATGGCCGACGCTTACATTACCTCCACTGCCACCAGTAGCACCGTCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAGATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG........................................................................................................................GTTACGTCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341765" ref_strand="+" ref_description="SGN-U341765        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14230479-14231243 REVERSE | Aliases: None(evalue: 4e-31, score=132) genbank/nr: conserved(evalue: 1e-30, score=137)">
      <seq>gcggccaatcggccgaattgatgagctgcttcagtcattttagggggaaaactgatttttgtttaggagaaggaagaaattggaatggcgagtgattggaggaaatcggtgggtaatgttagatccttcgtcggaaacttaaccggaggtttaaggggtggaagcaatttggcatcttgggttgtcgccggtactttagcttactttctatgggtcaagccatctcaggaactcaagaggcagcaagaggaaaaggccgctttggcggctgcatcagatgcttatcgctatgttgagaagcgaaaacccgttcctgatccgcaggaaactggattgatatacggtaacaagaacaaagctaaaagagctgaagaatagagcttcgcgagaattccatgccgttctgtaagtttaatgaatgctcagggaattgtctgctcattggcgtatagggaccttatatacttatacttctgaactcattttctttatagggccaaataattatctatacctagaaaaggaaatcatgtaagctttaagtttttgtggatataatgtagcatgttttttgttttcaaggtgaggttcttgaatagcatttactggtttatcagcatgatgttttatttccttttatcttagctctacatgaacatttttgttaattgttcaaagtttctatgtattggttcgactagcttctattcttatgttaattactccataaggattttgtattaacagtcatcaaatttcaagaatctttctcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="21090" stop="22625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21406" g_stop="21634" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="249" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21635" i_stop="21715" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21716" g_stop="21790" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="324" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21791" i_stop="21872" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21873" g_stop="22325" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="777" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U341765" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21406" e_stop="21634"/>
          <exon e_start="21716" e_stop="21790"/>
          <exon e_start="21873" e_stop="22325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCTGCTTCAGTTAATCTAGGGGGAAAACTGATTTTTGTTTAGGAGAAGGAAGAAATTGGAATGGCGAGTGATTGGAGGAAATCGGTGGGTAATGTTAGATCCTTCGTCGGAAACTTAACCGGAGGTTTAAGGGGTGGAAGCAATTTGGCATCTTGGGTTGTCGCCGGTACTTTAGCTTACTTTCTATGGGTCAAGCCATCTCAGGAACTCAAGAGGCAGCAAGAGGTATTTCTCATTTTTGTATTTACAAGTCAATCAATTGATAAGCCCTCAATTACAAACTAGTTGTTAATTTTTGGGTGACAGGAAAAGGCCGCTTTGGCGGCTGCATCAGATGCTTATCGCTATGTTGAGAAGCGAAAACCCGTTCCTGATCCGCAGGTACTTTGCCCTTTTCATTTCCATCAAGGGGTGTTTGTGCTGTATTCAGTATTAGTCTTATCCATTTCATGAATTTTGGCAGGAAACTGGATTGATATACGGTAACAAGAACAAAGCTAAAAGAGCTGAAGAATAGAGCTTCGCGAGAATTCCATGCCGTTCTGTAAGTTTAATGAATGCTCAGGGAATTGTCTGCTCATTGGCGTATAGGGACCTTATATACTTATACTTCTGAACTCATTTTCTTTATAGGGCCAAATAATTATCTATACCTAGAAAAGGAAATCATGTAAGCTTTAAGTTTTTGTGGATATAATGTAGCATGTTTTTTGTTTTCAAGGTGAGGTTCTTGAATAGCATTTACTGGTTTATCAGCATGATGTTTTATTTCCTTTTATCTTTGCTCTACATGAACATTTTTGTTAATTGTTCAAAGTTTCTATGTATTGGTTCGACTAGCTTCTATTCTTATGTTAATTACTCCATAAGGATTTTGTATTAACAGTCATCAAATTTCAAGAATCTTTCTCTTTTG</genome_strand>
        <mrna_strand>ATGAGCTGCTTCAGTCATTTTAGGGGGAAAACTGATTTTTGTTTAGGAGAAGGAAGAAATTGGAATGGCGAGTGATTGGAGGAAATCGGTGGGTAATGTTAGATCCTTCGTCGGAAACTTAACCGGAGGTTTAAGGGGTGGAAGCAATTTGGCATCTTGGGTTGTCGCCGGTACTTTAGCTTACTTTCTATGGGTCAAGCCATCTCAGGAACTCAAGAGGCAGCAAGAG.................................................................................GAAAAGGCCGCTTTGGCGGCTGCATCAGATGCTTATCGCTATGTTGAGAAGCGAAAACCCGTTCCTGATCCGCAG..................................................................................GAAACTGGATTGATATACGGTAACAAGAACAAAGCTAAAAGAGCTGAAGAATAGAGCTTCGCGAGAATTCCATGCCGTTCTGTAAGTTTAATGAATGCTCAGGGAATTGTCTGCTCATTGGCGTATAGGGACCTTATATACTTATACTTCTGAACTCATTTTCTTTATAGGGCCAAATAATTATCTATACCTAGAAAAGGAAATCATGTAAGCTTTAAGTTTTTGTGGATATAATGTAGCATGTTTTTTGTTTTCAAGGTGAGGTTCTTGAATAGCATTTACTGGTTTATCAGCATGATGTTTTATTTCCTTTTATCTTAGCTCTACATGAACATTTTTGTTAATTGTTCAAAGTTTCTATGTATTGGTTCGACTAGCTTCTATTCTTATGTTAATTACTCCATAAGGATTTTGTATTAACAGTCATCAAATTTCAAGAATCTTTCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342513" ref_strand="+" ref_description="SGN-U342513        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 | chr1:7272545-7274061 FORWARD | Aliases: F9H16.12, F9H16_12(evalue: 4e-42, score=168) genbank/nr: gi|15218067|ref|NP_173514.1| expressed protein [Arabidopsis thaliana] gi|20532086|sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA gi|25348247|pir||F86341 hypothetical protein F9H16.12 - Arabidopsis thaliana gi|4836899|gb|AAD30602.1| Unknown protein [Arabidopsis thaliana] gi|6319180|gb|AAF07197.1| ESCAROLA [Arabidopsis thaliana] gi|30102700|gb|AAP21268.1| At1g20900 [Arabidopsis thaliana](evalue: 3e-40, score=168)">
      <seq>tgaatctgacagtgatgctggtgcaagttctggaggcggagctcccaatcgccgtcctcgaggccgtccgcctggatctaaaaataagcccaagcctccaatcatcgtgacgagagatacgcctaacgcactccgatctcacgtgcttgaagtttcgaccgatgttgatatcatggaaagtatctccaattacgcaaggcggagagggagaggtgtttgtattcttagtggtagcggcacagttaccaacgtcaaccttcgtcagcctgctgcaagtgtagtcacactccacggacgtttcgaaatacttagcctctcaggtacggtgcttcctccgcctgcaccgcccgcctccagtgggatctctatatttttatcaggtggacaaggacaagtggttggaggatccgttgtagggcctttgatcgcatcaggtccagtcgtcttaatggctgcctcttttgctaatgctgtatttgaacgacttcccttggaggaagatgatgaggctcctgctaatgttcctactacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="27403" stop="28535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27703" g_stop="28235" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U342513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27703" e_stop="28235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGACAGTGATGCTGGTGCAAGTTCTGGAGGCGGAGCTCCCAATCGCCGTCCTCGAGGCCGTCCGCCTGGATCTAAAAATAAGCCCAAGCCTCCAATCATCGTGACGAGAGATACGCCTAACGCACTCCGATCTCACGTGCTTGAAGTTTCGACCGATGTTGATATCATGGAAAGTATCTCCAATTACGCAAGGCGGAGAGGGAGAGGTGTTTGTATTCTTAGTGGTAGCGGCACAGTTACCAACGTCAACCTTCGTCAGCCTGCTGCAAGTGTAGTCACACTCCACGGACGTTTCGAAATACTTAGCCTCTCAGGTACGGTGCTTCCTCCGCCTGCACCGCCCGCCTCCAGTGGGATCTCTATATTTTTATCAGGTGGACAAGGACAAGTGGTTGGAGGATCCGTTGTAGGGCCTTTGATCGCATCAGGTCCAGTCGTCTTAATGGCTGCCTCTTTTGCTAATGCTGTATTTGAACGACTTCCCTTGGAGGAAGATGATGAGGCTCCTGCTAATGTTCCTACTACAC</genome_strand>
        <mrna_strand>TGAATCTGACAGTGATGCTGGTGCAAGTTCTGGAGGCGGAGCTCCCAATCGCCGTCCTCGAGGCCGTCCGCCTGGATCTAAAAATAAGCCCAAGCCTCCAATCATCGTGACGAGAGATACGCCTAACGCACTCCGATCTCACGTGCTTGAAGTTTCGACCGATGTTGATATCATGGAAAGTATCTCCAATTACGCAAGGCGGAGAGGGAGAGGTGTTTGTATTCTTAGTGGTAGCGGCACAGTTACCAACGTCAACCTTCGTCAGCCTGCTGCAAGTGTAGTCACACTCCACGGACGTTTCGAAATACTTAGCCTCTCAGGTACGGTGCTTCCTCCGCCTGCACCGCCCGCCTCCAGTGGGATCTCTATATTTTTATCAGGTGGACAAGGACAAGTGGTTGGAGGATCCGTTGTAGGGCCTTTGATCGCATCAGGTCCAGTCGTCTTAATGGCTGCCTCTTTTGCTAATGCTGTATTTGAACGACTTCCCTTGGAGGAAGATGATGAGGCTCCTGCTAATGTTCCTACTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327464" ref_strand="+" ref_description="SGN-U327464        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>ccgaaggaaatatggcttttgggaataattactcattctcagctgagttgcttggatggggtggcaatgctgcaaatgaaaggcccccattttagctagtatatacgatagtgatcatgagattttcaaattactcaaaatgttaagagatagctggtgcagaaaatagccagttgtggctaacaaacactacttttttttttctaattccaccaacggaagaaaacttgaaagcaaggtgagtttcatgtatgtatatatatatatatagtgtttgtacaagtactatataacaatgctcatcttcattgtctanaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="28116" stop="29032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28416" g_stop="28732" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="341"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U327464" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28416" e_stop="28732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTAAA</genome_strand>
        <mrna_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327241" ref_strand="+" ref_description="SGN-U327241        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ARID/BRIGHT DNA-binding domain-containing protein, contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain | chr1:28713614-28717844 REVERSE | Aliases: F14G6.11, F14G6_11(evalue: 2e-91, score=332) genbank/nr: AT-rich(evalue: 2e-91, score=339)">
      <seq>agctgtggagacaagtcggcgaatcgtttaatccccccaagacttgcacaactgtgtcctggacattccgcattttttatgagaaggctcttttagaatatgaaaggcataagatgcaaagcggcaagcttcaacttcctattgctgctcttcctgaagcaggtgttgataatgagggaaatggtaatcaaactcctggatcaggcagggcgagaagagatgctgctgctcgtgccatgcaaggatggcatgagcaacgtcttcttggttgtggcgaggttggggagccaattgtaaaggacaagaatgccaaacatacgccaaagcgtgagaagaatttcaaaagcattggttctataaaacacaagagaccaaatgaaatggaacatccttcgaaagtggcacgaacagaaacatctaagcagttggttacaacagttgttgatttgggacctccagctgattgggtaaaaatcaacgtgcgagaaacaaaagattgttttgagatctatgctctggtgcctgggcttttgagagaggaggtgcgcgttcaatctgatcctgctggccgtctggtcataactggtcagccggaacaacttgacaacccttggggtattaccgccttcaaaaaggtagttagcctgccagctagaatcgatccacttcagacttctgctgttgttaccctccatggacagctctttgttcgtgtaccatttgcgtagtgaaaatatttgactcaagagggagttttgaacgtttggatgaactttattgacaaagcatggatgctgatagttgaccaacattgatagtcagattgtgaatgctagggccgtagattgtggatctgtgtatgatgattagtttgatcaaattagttgttgacgtgttctgtgggttaaaattttaaagcaaaaggaggcatgtcctgctgcgacacatttttttactctgggaatttagctagaacttttttgtttctgagattaatatttatactcaattatttctagttagcatttgactgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccggggggggggccgggccccctttcccccctaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="39706" stop="29583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39406" g_stop="39367" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39366" i_stop="35364" i_length="4003">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35363" g_stop="35318" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="86" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35317" i_stop="34552" i_length="766">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34551" g_stop="34462" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="176" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34461" i_stop="33103" i_length="1359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33102" g_stop="32980" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="299" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32979" i_stop="32876" i_length="104">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32875" g_stop="32824" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="351" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32823" i_stop="32593" i_length="231">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32592" g_stop="32520" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="424" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32519" i_stop="32050" i_length="470">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32049" g_stop="31983" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="491" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31982" i_stop="31902" i_length="81">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31901" g_stop="31851" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="542" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31850" i_stop="30936" i_length="915">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30935" g_stop="30843" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="635" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30842" i_stop="30285" i_length="558">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30284" g_stop="29888" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="1032" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1062" polyA_stop="1073"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U327241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1032</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39406" e_stop="39367"/>
          <exon e_start="35363" e_stop="35318"/>
          <exon e_start="34551" e_stop="34462"/>
          <exon e_start="33102" e_stop="32980"/>
          <exon e_start="32875" e_stop="32824"/>
          <exon e_start="32592" e_stop="32520"/>
          <exon e_start="32049" e_stop="31983"/>
          <exon e_start="31901" e_stop="31851"/>
          <exon e_start="30935" e_stop="30843"/>
          <exon e_start="30284" e_stop="29888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAAGTAAGCATCTAAATTTAATGAATCCTTTTTCTTTATGGAGCTTTGAACTTAAAGCATGAATCTTCCAATAATACAATGAAAAATGTAGCTCTACCTTTTCAAATGTCAAGTTCTCCCGTGTATGTAATGGAGATGAGGCATTGAAAATTGCAGACATTTTATTTATATTGCAAATGAGATACATATTGTGGCATCCATAATTATAATAATCGGCTGAAGATTATGTATGAGGTATAATTCTGGAGAGCGACCTTCGTGCATGGTATGGAAATAGAGGCTAATTTAGTAACAAGTATAATGATTTACAATTTATAAAGAAAGGTCTCGTATGCAAGGATATAGAACGTCAAGAATTGGGACCAAAAGGGCCCTTTTGCTTGTTTATTTTGGAAAGCAGGGTGGTGCAGTTCAGTCAGATTGTGTAGTCACCGTTGATGCTGCTTTTATAGTGTCAGTGTAGCTGAAGTCATCTAACATTCTATTGAGGGGCCTGGGTTATTCGTAGGACTTACTTTAGGTAGCTATTTTTGTTATTTGTTTGTTCGGACTTATTTTATTTTATTTTATTTATTTCCTTCATTTTAATATAGAGGTACTAGGAGTAACAGATTATACAAAATCAGAATACTTCGATTCTTTTTCTTATAAAATAGAACTAGATTCATCTTTCAAATTATTCAACCTTTGTTTTTCTTTTTGATAAGTAGGGGTCAAAATAGGAATGTAAGGGCGGGGAATGATTCTAATTGTCAGAAGAAGGGAGCAAGACTGCTCTTACAGGTCCTACGACGAAAGAGACATTCACTGGAACATCAAAAAACAACCCCGTTTCAAAGTTAAATCAACAACTGAGTGAGTTGAGTTTTGTGGGGGGCTTGGGGTAGATGTGCGGGTGCTAATGCAAGGAGTGATGTCGTTGAGTGGTTTGAGTGGGGATGGGGAGGACTCCACTTTTTGCTCCCCTCAACCACTAGTAGGTATTATGTAAGGAGGGAGGAAGATGTCTTAATGGATGGGGGATAAATTTCTCATGTTTGGGGAATTTGTAGGACTAAGATACTGCAGCGGATGTTTTTGGTTAAGTGTACCATCAGTGTTAAAGACTTGATAGTATAGTTATAGCCCAAATATGGATGGATGGAGGATAAAGTGATGGAATTACTGAATGAAATTGGAAAAGAATTTAGGGGTGTTTGGTTAGGTTATTGGAGAGTGGGAGAGGAACGAGGGATGATATCTCAAGCAGGGGTGGGTGATATTGTGGTGTATGAGGGGGCACAAGAGGATTGGGATGGGTTGTAAGGAGGATGAGTTTAAGGGAGCGGGAAAGGGTAAATTTGTTGTCAATAAATAGTAAGATCATTACGTGGAACATGAGGGGGATGAATGACCCAAACAAAAGGACCATCAAGGTGGGGATTAAGAAATGAGGAGCAGACTTGGTATGTTTCCAAGATACTAAGATGGAAGCAGTTACCAAGAGAGATGGGTGAAACATGATTTTATCCCGACAAGAGAGAGTGCAGGGATATTTTATTACTATGAGATGAGAAAAAATTCGAGGTCACGGAAACAAAGAAAGGGGAGTTTATGATAGCAGCTCGTGTTAGGGATATGGAAATCTGGAAGGTGTGGGAATTTGGAGGAGTGTATGGTCTGATGTGGGAAGGAACAAAAAGGGGGTTTTGGGAGGAGATGGCTCTTTCTTTAGTGGAATGGGAAATTCCATAGGTTCTTGGAGAGATATTAATACTATTAAGTTCCAGGAAGAAAGGTCAGAGTGTAGATCGGTGACTAGGGCTATGGATGAATTCTCGAAGTTTATAAACAATTATTTTCTTATTGATCTTCTTTTGGCAGGAGCATGGTTTGAAGTGGGGGATTCAATATCACTCTCTATACTTGATAGATTCTTAGTGTGCCATTCAGGAGGAGATAGTTCAAAATGTGGCACAAGTTCCTTTGCCTAGACTAATTTCGGATCATTTTTCCAATTATGTTAGATGAAAGTAGAAGCAGCCACATGAAACCCCCTTCTAGATTCTAGAACACGTACTGAAAACAATAAATTTTGGAGACAGAGTGACATGATGGGTTGCACATTTACCCCATCACAGGAAAACCTTCATTTTGCCTAGCAAAAATCAAGAACCAACACCAAACTTTTAGAAAAATAGAACCGTTACAGAATCGAAGAACCGTATCCATAGAACTGAAGAATTCAATCTTTTTTTTTTTTTACATTTATGCCCAGCCTTAGTTCGCACTATGAAGAGAGGTGATAGGGAAAAAGATGGAATTATGGAAGGGTGGTGGAGAGGTAGAAACATTACTTTTTTTTTTTGAGAATGTAACGATTTGTATTCTGTTTCCACAAAAACAGAAACTTGCCACGACAAGTTACAGGTTTCCTAATTACAATTGAGGAGGAGTATCTAGAAGATCTTCAACTCTTTTAACAAAACAATAATCCTAAGACATCCCTTATTGATTCTAGATCTTCCCTATACTCCTGTTTACACCAAAAATGTAAAATGGAACAAATCAAAACACTTCATCTTCATCTTCTGGATATTGTTGCTCTTGTTCTGATGGCACCTGAGGTTACTACTCCTTTTGGGTGTGGGCTTTGTGGAAATATCTTGCAGGGGTGTGAGGAATTTAGTGGTAACAAATTCAGAAGATACTAGAAGGAAATGTTCGTTGGGATCTTCAGTTGAGGAGGAATCTTCAAGATCGAGAGAAGGAGAAATCGTGAGAATTGCTTGAGACGCTGTACAAACAAACTCCTTCCTTAGAAATATGTTTCTTGGAGATGAAAGTTAGGGAATGGTGTTTGCTTTGCAGTAAAGTCTCTTTATGCTAAGATGCTCACAAGAGACGAGACAATTATCCCACACGATACAATATGGATTCCATGGATTCCCAGTGCACTAAGAAAGGTATTTTTTTTTGGCAACCAGAGGAGTGATTTTGGCAGCCGAGAATATGAGGAAATGGAGGATTAGATATGTTAGTTGGTGCTTTATGTGCAAAAACTCGAGAGAGAGGATATGGATCACCTTCTACTAGATTGTCAGGTTGCTTTAAGGTTATGGTGAGTGATTCTGAGATTGTTTGGACTACTGTGGTACAGAGCATGAGACATCACTCCATTAGCTCCTATCTAGGTAGTGTGGAGAGAGAAATAAGAGAGCTTTTGTGTAGCTTCTCTTTTTTGGTTTATACTACTTGTATACAGGAGTTTTCCCCTATTGTTAATGAAATTATTGCTTCCTTGATTAATAAAAACAACACCAAGTTGACTGTCAATTAAGTAACTTCTTATCTTATTGATATGGCACTTTTCACATTAATAAGACAAACAAACTTCGATTGTTTGTTCCCATGCCAAAAAGATCTTTCTAAGTTTATCCATTTGCTTTAGGACGAAAGCTGGGCAGGAGAAAGGCATAGTGTTCCTTTTCTATAAAATATTACTTTTGAAACATGTGGTACATGAGGATACCCCAACCAAACACATATATAACTTATCAAAAGGAAAAAGCACAGAAACACAAAATACAACGAATTGTTCTCTTTTTGATAAAACACAGAACGACATGTTCTAGTTAGACAGCAGAAGGTGTGGTCTAATCAAGAGAACAACAACTCTGTATATGTGCCTCTTCAGTGTCACCTGATCGATATCCGTCTTGAAGTCTAATATTTGGTAAACATGTATTGGTTCTCAACAATTAGAGATGTTGGGGTGTTACTATGTAAGAATGCCATGTAGTTAGACCCGGAAAGTCTGATGTCTCCAAAAAGAACACTGAGAGCTAATAAGGATAAAATGAGAGGTGGCAATGACCAGAACCTGTTTCGATACTCAAACAAGATGAGAAGTTACTTGACTAACAGTCAACTTAAACAGAGAACAAAACAGTAGCTTCGAAGTTCTTATTGTAGTATCTTTAATTTTGATTTTTTCCCTTTTAGGATAATCATTCTTCTCTTTCAGGACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAGGTAATAAACCCAAGAACCCATTGGTAGCTATTAGTATATTTTTACCATTTTTGTCCATTAATTGTAGCTTGTAAAATGATTTTTTGGCACCTTAAATAATCTTTCCAATGTGGATTGTTTGTGAAGAGCTTGGTAAAATTACTCAGTGGCAGTAATGATATTCTTTTTTCCTGTTGATGGTCTGTAAATGCCGCTACCTCCCTCCACAATATTGTTTTGCTTCTCGGGCCTTCTTTAAACGGAAACCTTTACTATTGACTCTATTATTTTTAATATTGCTCTGCATCAAGAGTTACCCAGAATCCAATTTCATTCTTATATAATTTTTTTGAAATTAGTAATGTTAATTTCATTCTTATATAATTTCTAACTGTTAATAACCTTTTCATTTCGGTTTGGACTCACTTATCTTTAGTCTATTATCCAACTTTAAACTAATGATAAGATGCATGCTTACTCAAAGTAATAGAGGCAAAATGGAGAAATAATGTGGTATATTATTTCCTATTTCTATTTATGTGGAGAATAGTTGGTGATAAGGCAGCTGAATCTTCTTTGGCTTCCTTGCAATTTAATCACTAGCTAGCATATCACCATTCTACTGTCTAGCCAATTTAAACCGATTTTAAAGCCTAATTTAACAACACCTTATGCTCTGCATATTTGGTTGTTTTTCTTCTCATAGTTCTATTATCTGGAAAACCTATTCATCCTTACTTTAACTTTCTATACCTTCTTTTGTTATGCAATGTTTTCTGCATTATAGGCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAGGTAAGCTTGAGTTTACATTCAGCTCCTCATTTGTACTAACTATGTATCTTCTAATAATTGAAACACTAGTCAAGTCAACTGGCAATTGACTCTATCGCCAAAAAAAAACACAGCACCACTTAAGCACTAATCTGTACAAAGATTGAATGACTACAGATTTTATCTATTGGAAGGACATATGGTTAAGCCATGTATTAAAATGGTACATTTTAAAATTTCACCACAAAGCCCAAAAGCTCTAGCCTTTTGAACTTTATTCAAGAAATGCCGTTTTTCCTTCAATACATCCAGAATTTGCTTTTCTCACGTTGTCCTCCGTCCGGCCTGGAGCTGCTTTTCATTCTTTGCCTTGCAAACTGCTAATGGCCTATTTTAAGCTTCTTGGCACTACCCATTTTACTCCAAAACGGCAAGTAAATATGAACCAAGTCATAGGATGCAAAATTTTTAAGTTAGGTACATTGGGACTTCTTCTCTTGAAGATTCACACATGTAACATTACTACGGATTGCTAATGGAGCCTCTTTTTTTTTTCTCCTTCTACTCTAAAGATAAATCTGGTTGGTTTTTTAGTTGATAGCTGAGAATATAGATTGCAGTATCAAAGTGAATACATGTTGGCTTGTGATCAACAGGGGAATTAGAAAGCACATTTTTTGGAGTGACATTAATGTCTAGGCATTAACATACCATACTGAGATGTTTACTTGTTTTATTTTATTAAATCTTGAGCCAATAGAAAATGCAATATTTTGGAATGTATGAAATACAATTATGAAGTATTAAGATATAAATTCCTTTGCCCCAGCAACATCATGCCCCACAGCTTAATGTCAAACTCACTAGAAAGATCACAGGACCTGTATGAAAACAAATACTTTTCCTTTTATTATCTAACTTGAATATTAAGTAATTTTTTTCCAATTTCCTAGAAAGAGCATCTTGCCTAAGCTATTCATTATTCCCATACATAATTTCTTTAAAGGTCTTACTCTTGGTATAACTATCTATTTTATTCTCTACTAATTTATTCCACGTATTTGTGACTGAAGAAGTTTTTGAAGTTTTGATGTCTTTAGTTCTCAGCAGCTTTTGATAATGTCTGCTTCACCCCTAACCCCCAAAAACGCTTCGGTGAGTCTTATAAATAGATTTGTGTCTCGAGTTCTCTACATCTTTTAATAATTCTGCTTCACCCTTACCCCCTAAAAATGCTTTGGTGAGAGTTATAAATAGAGTCTTGTCTGCTTTGATGGACATAGGTTCATGTAGATCATCTTTCCTTTATATTAATCAACTAGTTGACCTCTTAGGCATATAAAGATGTATAAAATAAACCATCTTGAAATAATTCTGTAGGGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAGGTCTGCTGAAATTATAGAACTCAACAAACATTTTTTGGTCGTGTTTACCTTTGACCAATGTCTCTTGACATGTATTACTATTTTTGTCATGGATCTCTTGATAGGACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTGGTAATTGTTATTTCTGGTTTTTTTTTACCAACCTTAACCTTTATATTTCTTTAGATTATTCGTCTCTGGTTATGATTTTTAAATTTGAAGTATCATATCCAGCAAATCGCTGGTTGGTTTGTGGGCCTAGTGGCTATCAAGGAGATGATAGTATGATACGGGACACGATAGAACGGATGATATCTGTTTCCTTAAGAAGTCAGATAATTTTGATCTTGTACTTGCATTCAGGTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCAGTTAAGTCGTTCTTTGTGTTGATTCTCTCATGTAACAATTTTCTTTGTCAAAATTCGTGCATCTTGTCATAAGGCGCTTGGTTTAAAAATCTTAGTTCAATGTAGCTACTCAAACTCCACAATTTGTAATGTTGGTTTCATCTTCATGCCTGTTTTTATTGTTTATTTTTTTCATCTGTAAAACCATTTCAATTTTCAATTTTGTCCTTGCAGCATCCAGACATGGTCATTTTTGAGTAGTATCATTTCACCTGATGTGTTGATCCCACATAGTTTCTTTTCTGGAAAAACTAATTATCATAGGCTTCTGAGATTTGATCTTTTAGTTTGAGATATATATGCCTTTACTGCTACTTTGGAGCCTGCGTTGTAAATTGATGTTGCTGTATGATTGAGCAGTATTGCTCTGCCATTTCTTTTCTTCTTTCCTCTTGCCCGGTTGTGAAAACTAAATTAATTTTATTTGCCAGGTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACAGTAAGTTCCTCTAAGATTCCAAGTATTTCTACTTTATGTTTACTCGCTCTTCCGTTGACCGTAATGTTTCTTCACAAACAGAAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAGGTATGTACCTCTCGCACTGCGTGTTCTGTTGCTATGTTTTATTGTACACAAATGCCCCCCCCCCCCGAACCCCCCACCCGCCCCCCACCCCCAGGTAAAAGTGGAAGTGTACAAATGTCATCTTTATGATAGTTTTCTAAAACATATGGATTTCAGAATTAGACTACATACCGTCTGTGTTATGTAAATCACATATCATTTGGAAGCACTTTAAAGGAATCCATGCGAACATTGTGCTTCTGTTTCATATGGGTGCTTGACCTTCACCGCAAGCTTTGTCTAGGTAAAAAAGCAAAGTGGCCTCCTTAAAATGATAAAACCCAGGGGAGGAAAATTGTTTATTTTGGAAAGGAATGAGGTTCTGAACAAAGACGGTAATCTATGCACTTTGGCCTATGCTATACACAAAATAAGGACTTATTTGTGAACCATATTTTTCATATCCTCCACACATCATATTTAAGCGAATGCTCTTTTTGTTGTTGCTATTTTTGGGCATAGAACTGTTTCCATTTTATCTGATTGCTTCAAGGGATGGATTAGCTAAGTGAGCGGGAAAGACACGTGCATATCATCGATAAAATCCTCGTTTTCACATTTGCAGTTGTGAAGTAGTGAAAGAAAATATTTTCAAGCTTCATTGAAGCTGGCCACCTTTTTAAAAGAGATTTTCCTTTATGCACCAGTAGTTTTGTAGAATATGATATATGGCTGATGCAATTCTTAGTGCTTACTATTCAAACTCTGACAAGTATAAGATGTTCATTTTCGTTAAATCATCCGTGTTATATTTCCGAGGACAAAAATGTAGTGGCTATTGATTGATCTGAGTCATTATTATTTAGCATATTCTTGCAGTGAATTCTGGTGTATATTGATCCAAAAGTTTTCATTCCTTATTTCTTGGGTGACCAGGTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAGGTAAGTTTGGTTATTTTATTGATCTATTTCAATATGAATTCTCGTTCTACAACTATCGTGATTTTGCATCATCTGTGCCTTTCTGCTGGAAGTTTAAAGACTGATGATATCTAAGGAAAAGAGAAACTAGTGCGTGTTTGTGCCAAGAAGACAGAAAAAAAGTTCTTTGTTGAAGTTCCTCCATTATTATTTCTTGGAAATGGAGTCTAATTTTTTTCAGAATAGGAGAGCTATTTACTTTTCTGAGATAACGGATATAATCTAAATGCTGTTCCAATTTATAAATGGCTTGCCAACTGGTGTGCATGTCATGTTCACAGTCCTTTTCTATTTTACTATCCCTTTTATTGGCATGGGATAAAATATTAAAGGTTATATAACCAACAAGTGCCCATGAGGTTTCTGGTTTGTTCAGTTGCTATATGTTTGGTCAAACCAAATAATATAATCTTGGTCTTCTGATATCCAAACTATACATAGAGATGTAAATACTTGAATTATTTTTCAATTCTGATGAAACAGAGAGTATCCATTTATGACTTGCATTGGTTTTCTCAGGTAGTTAGCCTGCCAGCTAGAATCGATCCACTTCAGACTTCTGCTGTTGTTACCCTCCATGGACAGCTCTTTGTTCGTGTACCATTTGCGTAGTGAAAATATTTGACTCAAGAGGGAGTTTTGAACGTTTGGATGAACTTTATTGACAAAGCATGGATGCTGATAGTTGACCAACATTGATAGTCAGATTGTGAATGCTAGGGCCGTAGATTGTGGATCTGTGTATGATGATTAGTTTGATCAAATTAGTTGTTGACGTGTTCTGTGGGTTAAAATTTTAAAGCAAAAGGAGGCATGTCCTGCTGCGACACATTTTTTTACTCTGGGAATTTAGCTAGAACTTTTTTGTTTCTGAGATTAATATTTATACTCAATTATTTCTAGTTAGCATTTGACT</genome_strand>
        <mrna_strand>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAG........................................................................................................GACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTG.......................................................................................................................................................................................................................................GTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACA.................................................................................AAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTAGCCTGCCAGCTAGAATCGATCCACTTCAGACTTCTGCTGTTGTTACCCTCCATGGACAGCTCTTTGTTCGTGTACCATTTGCGTAGTGAAAATATTTGACTCAAGAGGGAGTTTTGAACGTTTGGATGAACTTTATTGACAAAGCATGGATGCTGATAGTTGACCAACATTGATAGTCAGATTGTGAATGCTAGGGCCGTAGATTGTGGATCTGTGTATGATGATTAGTTTGATCAAATTAGTTGTTGACGTGTTCTGTGGGTTAAAATTTTAAAGCAAAAGGAGGCATGTCCTGCTGCGACACATTTTTTTACTCTGGGAATTTAGCTAGAACTTTTTTGTTTCTGAGATTAATATTTATACTCAATTATTTCTAGTTAGCATTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326141" ref_strand="-" ref_description="SGN-U326141        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G20925.1 | Symbol: None | auxin efflux carrier family protein, contains auxin efflux carrier domain, Pfam:PF03547 | chr1:7290601-7292496 FORWARD | Aliases: None (evalue: 3e-49, score=190) genbank/nr: gi|22329697|ref|NP_683316.1| auxin efflux carrier protein family [Arabidopsis thaliana](evalue: 2e-47, score=190)">
      <seq>agataatgtcacaaaataacaacttgtgctacttggtcacatcactgaatgtaatccattaagcatctttgacttgttgaaatgattgcagggatggagccataccacttctaacactgatcatgggcggtaaccttttgaagggtttgaccggttcagggattcagaaatccctacttcttggcattattgttgtcagatacattgccctgcctcttattggtatcgttgtagtcaaaggagctattcgcttgggcttggtgcaacatgatccattatatcaatttgtgcttttacttcaatttgcacttccaccagcaatgaacattggcaccataacacagttatttggagctggtgagagtgagtgttcagtgattatgttttgggcttatgcattggcttcaatatcgcttactctgtggacaacattcttcatgtggcttgtatcttaacttcatttttttttaatatcagacataatcaagttgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="48212" stop="51531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48512" g_stop="48841" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48842" i_stop="49097" i_length="256">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49098" g_stop="49262" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="495" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49263" i_stop="49953" i_length="691">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49954" g_stop="49966" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="508" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U326141" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326141" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48512" e_stop="48841"/>
          <exon e_start="49098" e_stop="49262"/>
          <exon e_start="49954" e_stop="49966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATGTCACAAAATAACAACTTGTGCTACTTGGTCACATCACTGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTGGTATGACATTCAGCTAGTTATTATCTTTCCTGTTCTTTTCGTGTTTTTTTTTGGCCCGACCACAATTTCAAAACCGTAAAGATCCCTATGTTTGCTCTGCATTAATTTCAAAACCGCAAAAAAACCATATGTTTGCTCTGCATTCAATGGACAAGACAATTGGTTTTGACAGTAACCACTTGTAGCATTAAAACAATGTGTCTGTTGCATTACTAAGTCTTAGATGAGATGACACAATTCTTGTTTCACTTGGCAGGCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAAACAAGTTGACATGTCTACCAGTGTACTATGATAACGAAAATCAGGAACTAAAAGTTTAACCTTGTTAGATGTGGTCATTAACATGCTCTAAGTTCAATGAAGATTCTTTAGTGTCGATTCTTCAAGCAATGCTCATTTTGCAAGGAAAAGTTTGTTTTGGAGCCTAGATGACGAGCGCACGACATGTTTCAAGTGTTGACAACATTATTAATAACATGACCCGCTAACACAGTTGCTTCTCTAAAGCAAGCCATTCTTGGAGCGGAGAAGACATGTTGTAAGATAATAATCAAAGAAAAATAGAAGTAGGCACAAGGCACTTTGAGGACAATTTACAGCAAAACACCCCAAGTAATGTGATAGCAAAATATATCATTGCACATAGTTGTGCTTACATTGATCCAGTTGATATTAAAAGAAAAGGTTTAGAAATGAAACACATCATCATACTAATTGATACTACTATTAAAAGATGCTTGAGAAAAGCAATAAAAGCTTGCGATAGAGGTTAGACGAGTTTTGTTGATCAAATTGCTGACTTTTTTCAGAGAGGAGTTTTGTCGAGATCATCAAAATAGGGATGTTCCATAGCTTTCTTAGCTGAAATCCTCCTAGACGGCTCATAATGCAACATCTCCTGCAAACACAAAGTGTTCACACCTTAAATCATCCACTCATTCAAACAGTCAGACAATCGTAAAAGAAAAAAGAAAAAC</genome_strand>
        <mrna_strand>AGATAATGTCACAAAATAACAACTTGTGCTACTTGGTCACATCACTGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTG................................................................................................................................................................................................................................................................GCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAATCAAGTTGACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323897" ref_strand="+" ref_description="SGN-U323897        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT1G20930.1 | Symbol: CDKB2;2 | cell division control protein, putative, cdc2MsF (Medicago sativa) gi:1806146:emb:CAA65982 | chr1:7292561-7294735 REVERSE | Aliases: F9H16.8, F9H16_8, CDKB2;2, Cyclin-dependent kinase B2;2 (evalue: 7e-151, score=530) genbank/nr: gi|11125685|emb|CAC15504.1| B2-type cyclin dependent kinase [Lycopersicon esculentum](evalue: 0, score=635)">
      <seq>cggcacgagagcgcacaaacacaaacacagcgagagtgaagaaatggaggctgctaaaaatgctggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtacctatggaaaggtgtacagagcgagagataggattactggcaagattgttgcactgaagaagacaaggcttcatgaggacgaagaaggtgttcctccaactactctccgtgagatctcactcctcagaatgctctcaagggatccccacattgtcaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaattgtaaagagcttgatgtaccagctctgcaaaggggttgctttctgccatggccatggtgtattgcacagggatctgaaaccacacaatcttctgatggaccgtaagacgaatgtgctcaaattagcagattttggacttggcagagcttatactctgcccattaagaagtacacacatgagatattaaccctgtggtatagagcccctgaggttctacttggagctactcattattccacagcagttgacatgtggtctgttggttgtatatttgctgaactagtgacaaaccaagccctcttcccaggagactctgagctgcaacaactgcttcacattttcagattgctaggtactcctaatgaagaactctggcctggggtgagcaagttagttaactggcatgaatacccccagtggaaaccacagccactctcaaccgttgtccctggtcttgatgaagatgggattcaccttctcagtgagatgttgcattatgagccgtctaggaggatttcagctaagaaagctatggaacatccctattttgatgatctcgacaaaactcctctctgaaaaaagtcagcaatttgatcaacaaaactcgtctaacctctatcgcaagcttttattgcttttctcaagcatcttttaatagtagtatcaattagtatgatgatgtgtttcatttctaaaccttttcttttaatatcaactggatcaatgtaagcacaactatgtgcaatgatatattttgctatcacattacttggggtgttttgctgtaaaaaaaaaaaaagtgcactgaagcaacccaaacgtagactgaagtgcaagaggctaaaaaggcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51834" stop="49282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51540" g_stop="51261" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50930" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="421" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50835" g_stop="50774" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="483" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50679" g_stop="50568" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="595" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50567" i_stop="50476" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50475" g_stop="50382" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="689" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50381" i_stop="50264" i_length="118">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50263" g_stop="50194" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="759" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50193" i_stop="50110" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50109" g_stop="49971" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="898" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49970" i_stop="49888" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49887" g_stop="49583" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="1203" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U323897" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1204</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51540" e_stop="51261"/>
          <exon e_start="51071" e_stop="50930"/>
          <exon e_start="50835" e_stop="50774"/>
          <exon e_start="50679" e_stop="50568"/>
          <exon e_start="50475" e_stop="50382"/>
          <exon e_start="50263" e_stop="50194"/>
          <exon e_start="50109" e_stop="49971"/>
          <exon e_start="49887" e_stop="49583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCAGAAGCGCACAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAGGTTTGTAGTCTAAATTATCGGAGTTGTATGCTACTTCTCACACATTTGTGACTCTGCAGTTTAATGTTTAGTAAATTTGTGCTCTTTGAAACAGAGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAGGTAAAGCCACACTTGTACCTTTTGGTCATACACAAACTCATAAATATGCGCTTTTCATGGTCGTTTTGTCACTTTTTTTTATTTGTTGCTGCAGGGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAGGTAATTTTACTTTTCTGCTGCAGCAGCTATCCTCATTTATCTATGCTCTTTAGATCCCCCCTGTATGTGAAAATATTCCCTTTTTCCTTCAGATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTGGTAAAACTCTTATTCATCCTTCCTCTTCCGAATGATCTTTTCCTCCTTATAGGTTGTGTAATATACTAAGCATGGAGTTATAATTGTTCTTTCTTTTGTGGTTTGTTTTCAACCTCAGCTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAGGTTTAGAGCTAAAAATCACTAGCTTTGAGTTTTGTTCCTCCTCACCTGTTCCACTATCCTAATCTTAACAGAATTGCGGTGCAGATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGTGTAGGTTTTTCTTTTTTCTTTTACGATTGTCTGACTGTTTGAATGAGTGGATGATTTAAGGTGTGAACACTTTGTGTTTGCAGGAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</genome_strand>
        <mrna_strand>CGGCACGAG-AGCGCACAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAG..............................................................................................AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAG..............................................................................................GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAG............................................................................................ATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTG......................................................................................................................CTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAG....................................................................................ATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGT...................................................................................GAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U314841" ref_strand="+" ref_description="SGN-U314841        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: AT1G76550.1 | Symbol: None | pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP:Q41140 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase | chr1:28727596-28731900 REVERSE | Aliases: F14G6.15, F14G6_15 (evalue: 0, score=882) genbank/nr: gi|129881|sp|P21342|PFPA_SOLTU Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPI-PFK) gi|482294|pir||A36094 diphosphate-fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90) alpha chain - potato (cv. Kennebec) gi|169538|gb|AAA63451.1| pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha-subunit(evalue: 0, score=1024)">
      <seq>gagagtactattatattatattgaaacacacaaaaaagtgaggtaggcataaacaatggatgcagattacggcatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcagttcaggctagggctgaacatgataaaaatcatggtgtcatcctgttgcctgaagggcttattgaaagtattcctgaaatatatgctctattgcaggaaattcatggtttactcaggcaaggtgtttctgctgataacatttcctctcaactatcaccatgggcttctgcacttttcgaatttttgccgcattttatcagaaagcagcttctcctacacccagaatcagatgactctgctcagctatcacagattgagaccgagaaacttatagctcatctcgtggaaacagaaatgaacaagcgattgaaagaaggaacttacaaaggaaagaaatttaatgctatttgccatttctttggttatcaagcacggggatcattgccatcaaagtttgattgtgactatgcctatgtgcttggtcatgtttgctaccatattttagctgctggtcttaatggttacatggctactattaccaacctgaaaaatcctgccaacaagtggcattgtggtgctgcccctatatctgcaatgatgactgttaagcgctacggtcgtggtcctggtaaagcatcaattggggtacctgctttgcatcctgctactgtggatttgaggggcaaatcatatgaactgttgagtcaaaatgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70949" stop="65062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70649" g_stop="70505" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="318" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="431" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="506" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="620" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="688" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="772" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="826" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="907" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="908" r_stop="1001" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.350" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1002" r_stop="1075" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1076" r_stop="1186" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1187" r_stop="1231" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1288" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1289" r_stop="1393" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="65918" g_stop="65802" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1394" r_stop="1510" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="65801" i_stop="65696" i_length="106">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="65695" g_stop="65592" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1511" r_stop="1614" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="65591" i_stop="65384" i_length="208">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="65383" g_stop="65362" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1615" r_stop="1636" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U314841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70649" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65802"/>
          <exon e_start="65695" e_stop="65592"/>
          <exon e_start="65383" e_stop="65362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTACTATTATATTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCTGTAAGCAACTTCTTTGAACTTATCCGGAGATGCACCCTAAACTTCCACTTTTTTGAAGTTGTGAATATCCAAAAGATCTGCTCTGTTCACTGTTTCGTTGCTGCAGGCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGAGTATGTCAAATTTCTGAATTGTTGTTTATATATATTTTCAGCTTAAAATGCATGGAACTTTTGAGTTTCAAAAGGTAGGAAGTAGTAGACATCAAATAGTAGGAGATGCTTTTAAGAAGTGGCATTCTAAACATGCATTTTGTAAGTAAACTGCTGGAGCAATACGTATCCTCTTGCAGCACCTAATTTCTCTTTTCATTTTGTGCAGACTGTTGAGTCAAAATGCAACA</genome_strand>
        <mrna_strand>GAGAGTACTATTATATTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG.................................................................................ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG........................................................................................................................................................................................................................................GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG..................................................................................CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG.....................................................................................ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAT............................................................................GTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCT..........................................................................................................GCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGA................................................................................................................................................................................................................ACTGTTGAGTCAAAATGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333669" ref_strand="-" ref_description="SGN-U333669        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ATBZIP60 | AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). It is hypothesized that upon ER stress the protein is proteolyzed and the soluble part translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. | chr1:16138292-16139903 REVERSE | Aliases: F13A11.5, F13A11_5, ATBZIP60(evalue: 2e-23, score=106) genbank/nr: gi|60459369|gb|AAX20030.1| bZIP transcription factor protein [Capsicum annuum] (evalue: 5e-72, score=196)">
      <seq>ggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaacagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatctagagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttttatgaccaagcaggagtctgctgttgggttccctgctttggttcccccccctcccatgcctgctcattttacccagccaaacctggtcagttccagaagaaaatcagggaagcagaaaccacgtgcttctggttccaataaaggagggaaaaaagactagtctgattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtccctccccgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcatagattctcttgtatgtgtcttgctttgacatctgaaggatgtagtacggtgttattagttaatgacttatgagctatataatcttaaaagaactttttaatagttccaaccggaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73606" stop="71139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73306" g_stop="73235" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72107" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="275" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72106" i_stop="71871" i_length="236">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71442" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="702" r_length="427" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="724"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U333669" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333669" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73306" e_stop="73235"/>
          <exon e_start="72309" e_stop="72107"/>
          <exon e_start="71870" e_stop="71442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCG</genome_strand>
        <mrna_strand>GGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAACAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTAGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTTTATGACCAAGCAGG............................................................................................................................................................................................................................................AGT--CTGCTGTTGGGTTCCCTGCTTTGGTTCCCCCCCCTCCCATGCCTGCTCATTTTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAATCAGGGAAGCAGAAACCACGTGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCTGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTCCCTCCCCGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCATAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGTAGTACGGTGTTATTAGTTAATGACTTATGAGCTATATAATCTTAAAAGAACTTTTTAATAGTTCCAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312565" ref_strand="+" ref_description="SGN-U312565        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: | Symbol: ATBZIP60 | AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). It is hypothesized that upon ER stress the protein is proteolyzed and the soluble part translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. | chr1:16138292-16139903 REVERSE | Aliases: F13A11.5, F13A11_5, ATBZIP60(evalue: 4e-27, score=119) genbank/nr: gi|60459369|gb|AAX20030.1| bZIP transcription factor protein [Capsicum annuum] (evalue: 5e-96, score=354)">
      <seq>taattaaaaacttggaatttcgttgaaagtgtttggagccttaacctctaagacacctaacgtgattattaaattggggacatccagagatcgggtcccaaaatagtgagtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtgactcgttgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcagagattctcttgtatgtgtcttgctttgacatctgaaggatgaagttcactgttattagttaatgacttatgagctatataatatctatgcaactttttaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="74071" stop="71152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73771" g_stop="73235" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="761" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71452" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="1180" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1181" polyA_stop="1196"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U312565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1180</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73771" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAAAAACTTGGAATTTCGTTGAAAGTGTTTGGAGCCTTAACCTCTAAGACACCTAACGTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</genome_strand>
        <mrna_strand>TAATTAAAAACTTGGAATTTCGTTGAAAGTGTTTGGAGCCTTAACCTCTAAGACACCTAACGTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329561" ref_strand="+" ref_description="SGN-U329561        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | spindle checkpoint protein-related, similar to spindle checkpoint protein BubR1 (GI:22128593) (Xenopus laevis); similar to Mitotic checkpoint serine/threonine-protein kinase BUB1 beta (EC 2.7.1.-) (MAD3/BUB1-related protein kinase) (Mitotic checkpoint kinase MAD3L) (Swiss-Prot:Q9Z1S0) (Mus musculus) | chr2:14220680-14223075 REVERSE | Aliases: F4P9.33, F4P9_33(evalue: 1e-126, score=450) genbank/nr: gi|18403316|ref|NP_565767.1| expressed protein [Arabidopsis thaliana] gi|20196848|gb|AAB80673.2| expressed protein [Arabidopsis thaliana](evalue: 1e-124, score=450)">
      <seq>aatattgcgaaaatctggaatttaaaggagggtccaacggctatgaaaggaagggtttagggcacaaaacaatttcaaatttgaaagaaggctctcaaaaaaacaccaccacaaggaagcagcaagaagaagaaatggagaaggtaggaggagattacgtattggataaggaggcagagttcttagcgtcgaagcaagagactggtcacgagtgggaactcttcaaggaaaatgtcagacctttgaagagaggacgcaacgttaatcttctcaataatgctcttaagtctagtaccgattatcaactcaagaaatctcttcttgacaaacgaagggaatttattgaagcaattgacaagtacaaaggtgaagatcctcttcacccatggctccagtgcatcaagtgggtgcaagaggctttccctcccggtggggacagttctggacttatagttatttatgaacaatgtgtccgcaccttttggcacgatgaactatataagaatgacctccgttacttgaaagtgtggctggaatatgctgaaaattgtatggatgctgaagtcatttatagctttctggaggctaacaaaattggactgacacattcttcattctacatagcctatgctttgcacatggaatctcaaaataaaattaaaacagcaaacgagatcttcaatcgggggctatctatgaatgcagaacctgaagagaaattgaaagtatcctacaagaagtttttcagtcgttcaatgggtcgccccaaagcagcagaggaggagataacagaacaccagcttccaatgagaagctttggcacactgttggctaggggggaagctcgaaaccaaacaacaggaacttctgaattgtcccggaagaaaatgaaaccagatagagctcaggggagcctattttccatttacaaagatgcaaatgccggaatgtcatcaactcttcaatcagaaataccaaagctagagaatacatcatggcactgtcttggtgcccgagcagataggaacaaggagaatcaggcaatcccttcaaagtggacatctaataagattcctcaaagacacgggcttagaaatcgaggagctactactaccaccactccgtgcctagagatctttgtggatgaggaatgtgccaaagcacaggagaaggactctgctgctggtgtaaaggcttctagtctgcagcttagacgaggagatgacaaagacataaaaaaggagactgagttgctgagggagaatcccctgcgttattttccaccaagctcattaccaagatgatcgatctcacagaagaaagtcatcattgtgtgctgggatttctcatctcagagttactcaacttgtatcttaaaagtgtatggagacaattcctctttgcccagtgcaagcaccgttacagatgttctaaatatatcgagtggagttgaggagacattgttggaatgttttggtttttggcaggcttgagccaaatcctccagtattttggtatttagatggaatgattttatatgattgcaacagttattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="79523" stop="74412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79223" g_stop="78890" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78889" i_stop="78715" i_length="175">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78714" g_stop="78655" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="394" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78654" i_stop="78532" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78531" g_stop="78387" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="539" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78386" i_stop="78293" i_length="94">
            <donor d_prob="0.188" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78292" g_stop="78135" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="697" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78134" i_stop="76387" i_length="1748">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76386" g_stop="76305" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="779" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76304" i_stop="76232" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76231" g_stop="76165" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="846" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76164" i_stop="76094" i_length="71">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76093" g_stop="76039" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="901" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76038" i_stop="75693" i_length="346">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75692" g_stop="75524" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1070" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="75523" i_stop="75428" i_length="96">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="75427" g_stop="75339" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1071" r_stop="1159" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="75338" i_stop="75178" i_length="161">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="75177" g_stop="75097" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="1240" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="75096" i_stop="75027" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="75026" g_stop="74712" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1558" r_length="318" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U329561" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79223" e_stop="78890"/>
          <exon e_start="78714" e_stop="78655"/>
          <exon e_start="78531" e_stop="78387"/>
          <exon e_start="78292" e_stop="78135"/>
          <exon e_start="76386" e_stop="76305"/>
          <exon e_start="76231" e_stop="76165"/>
          <exon e_start="76093" e_stop="76039"/>
          <exon e_start="75692" e_stop="75524"/>
          <exon e_start="75427" e_stop="75339"/>
          <exon e_start="75177" e_stop="75097"/>
          <exon e_start="75026" e_stop="74712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTGCGAAAATCTGGAATTTAAAGGAGGGTCCAACGGCTATGAAAGGAAGGGTTTAGGGCACAAAACAATTTCAAATTTGAAAGAAGGCTCTCAAAAAAACACCACCACAAGGAAGCAGCAAGAAGAAGAAATGGAGAAGGTAGGAGGAGATTACGTATTGGATAAGGAGGCAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATAATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAGGTTCCTCTATTTCTTCTTCTTTGCATTTTCATGACATTTACTCCTGAGGTTGGTCCAAAATGCAATTACTATTCCATCCCGCACTAGATTTTGATTAAGATGTACACGCTAGTTGTAGAATAGTAGCAGTTGCTGCATCCCTTATTAATTTTTGAATTCAACTCTTTCTGATTAGGGAATTTATTGAAGCAATTGACAAGTACAAAGGTGAAGATCCTCTTCACCCATGGCTCCAGTGAGTGCTCTTCTTTTCAGATGCAAATAATTTTTCAACTCTTATATCTTCTACTAGCATTTAATGAGTCAATCTCTGTTATTGAATAAACTGCTGACATAATTTTACATTAAAATTGTGAAGGTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAACAATGTGTCCGCACCTTTTGGCACGATGAACTATATAAGAATGACCTCCGTTACTTGAAAGTGTGGCTGGAATATGTGAGTTTGATTTCTCCACATCCATTCTTTTGCCCCTAAATCTTCTCATCATGCAATTTGGTAAATCAGTTTTCTTATTGATGGCTCTTTGCAGGCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACACATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCAAAATAAAATTAAAACAGCAAACGAGATCTTCAATCGGGGGCTATCTATGTAAGTTGTGTTTCCATTGAGCCTTGGTTTAATTTTAGCCGTAAAGTTAGGTTCTTGCATAGTTAACATTGTGTTTCACTTCACACTAGGCAAGTGAACACGTCTTGGTTCCAGAGAAGTTATGCTATATGTTGTCTATGATGTGAGATGCATCATTCAAATGGTTTATTGAATTGCTGTCTGATATTTTTGTTCAAATAGCGTTTGATATGTCAAGTCTAATGATGTCTACGAAAGTTGCATTAATTGTATGCTAGTATTGAGTAATGTGTGGGGGCTGGGGGGGGGGGGAGGGGATTTATGTTTGAAGCTTCGCCAAAATGAGTTCAGTGTTAAGTATGAAGCTGCACGGATAAGTATGTGGTGTCCCCTTCATATTGACCTACTAATTTTCATACCTTGAATACTAAGACAATTTCATTTGATAAGCTCAGAGGTCAGAACTGTGGTAGATTACATTGCTTACGGTCCCTTATTTTATGTTCTTTCAATATATGCTCATGTGACCGAATAATAAACTAAAGGCCGTGATCGTATGACAGTGGTATGCTTCTAGAAAACTTTATAATTATTAATTGCCATATGATGAACATATTTGATATCCTTATTAAGGAAATTTTGTATAAGCCGAGTAATATGATTATGAAGAACTACATGTATCTTTTTGAATTATGAAATGATTGGTTCCTTTATAGGCATCAATTGAATCAGATAGTACCATGTCACACAATTATGTTAAGCATTTGTACAGGATGAACAACAGAGACGTTATCATTGAGAAATTTGTGCTCTGGAATTAATCATTTATTTAGCTAATATAGATATTTCAGGTATGGCAGCATGCAAAATAGCCAGTGCCACTGTTCATTGAACTTTGCTTAATTACACAACCTAATCATGTTGTTTGTAACTTGTATAGCATGATTTTCTACTAAGAGCATTTCATGCCTTCAAAACAGCAAGTCTCTGTATGTGTTTCTAATAAAATGCTCTAGCTATCAACTGTTGACATAAGAATATATTGAAATATTTATTTCTTGTTCACATTTGCCTCATTCTTGAGGGACCTTTTATATTCTCTCTCTACTTGTTTTAACTTCTGATGGGGATGTGAATGCTATGATGCTGGCCAAACTTGCTGGCAGAATAATGCTACAGCAAGGTGAAAATTCTAATATATTTGGCATGATATTATTGTGGATGCTCAATTGGTTTTAGATATTACCTGACACCTAAATACCTTTGGGGGTAGTTTGGTTGTTGGATAGAGTTGTGCAGGTATTAGTTATGTAGGGTTCAATTATTTACGTATTACTAATTCATGTATTAGTTATACCATCTTCAAAGCTGCATAAAATAATACATAGATTGACGCCTAACTAGTACATGTTTTAGTTATGTGAGATTGTAAACCGTAAGCAAAAAACCATACTTGATGTGCTGAGTTTTATACATAGCAACTAAAATGCTGCCAAAAATGGTACTAGTTTATGCAGATTTTAATATATGAATAATCTAACCAACAACTAAACGACCCCTTGGGCTGCCTCAACAAGATTGTGGATGCTCTTTTTTCAAGCTTTCTTAGCCACTAATGAGTCTTTTCCATTAGAGATACAGTTAATACAAGTACAGAACACTGATTACACCAAGTAACCTTCCTCCTGCTTGTTCTCATCCACTTATAAGCCTATTTACTGACTCCCTCAGCTGGTTTATGATTAAAATTTCCGTCTCCAATGAATCAGGAATGCAGAACCTGAAGAGAAATTGAAAGTATCCTACAAGAAGTTTTTCAGTCGTTCAATGGGTCGCCCCAAAGCAGCAGAGGTATCAATTATTGTGACGACTTAAGTCCATTGTCGTTTGCTTTGATTTGAATTTGTGACGATTTGTATTTCAGGAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTCGTAAGTGCATTTCTATGTCGTAGCTTCAGGGTGTCTGCTTGCTTTGGTTAACATTGTTTTTGCCTTTGCAGGAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAGGTAAGTGTGAGTCACTATTGTTTTCTCCCAAGTTACGTTCTTGTGTCCCTGCATTTTTCATAGTAACACCATGAGTTAAACAAATCTATGTCGTTATTACTTGTTCTTATCATCACATAGTTAAGCTGCTATGTCAGGCAAGAGATCTGATTCTGATGAGTTCTTGTTTTAAATACCTTAAATCCTTTGCAATGTGGAAAAGAACTTTTTGTTGTTATTGCTGCCTATTCCATAACTTGAAGGAAAAGGAGTGTAAGGATGCTGATAACAAGGTTGCAGGAAATACTTACCTTTTTGCATGCCCAGTTCTAGTAGAAACACTGGCTCATTTTTATCTATTTTGCAGAGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAGGTCCGTTTGAGTCCAGAGAGTTCAAAATAGAATATTTGATTTTTTGTCCAAACAGATAGGAACAAGAAAACTCATTAACAAAAATATTTCTTACAGATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAAGTGAGTACCCATATAGATACAATGGTTTTTTGAGTGCGAACAACACATAGTTAACACTTAACAGTGTGTGTACATGCATCAAGACAAGGAGATTTTCAGCTATTGTAATAGTGTTAGTTTGTGGATTGACTTTCTTTGTTGCCCCCCTTCATCTTTGGCAGAGCACAGGAGAAGGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAAGTAAGTATCAAGTTTGTTTCTTCACTTCAATAAAAAGAAAGCACCTTTTTGACAATGCACTTGTATGCAGGGAGACTGAGTTGCTGAGGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTCAGAGTTACTCAACTTGTATCTTAAAAGTGTATGGAGACAATTCCTCTTTGCCCAGTGCAAGCACCGTTACAGATGTTCTAAATATATCGAGTGGAGTTGAGGAGACATTGTT-GTATG-TTTGGT-TTTGGCAGGCTTGAGCCAAATCCTCCAGTATTTTGTTATTTAGATGGAATGATTTTATATGATTGCAACAGTTATTGAT</genome_strand>
        <mrna_strand>AATATTGCGAAAATCTGGAATTTAAAGGAGGGTCCAACGGCTATGAAAGGAAGGGTTTAGGGCACAAAACAATTTCAAATTTGAAAGAAGGCTCTCAAAAAAACACCACCACAAGGAAGCAGCAAGAAGAAGAAATGGAGAAGGTAGGAGGAGATTACGTATTGGATAAGGAGGCAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATAATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAG...............................................................................................................................................................................GGAATTTATTGAAGCAATTGACAAGTACAAAGGTGAAGATCCTCTTCACCCATGGCTCCA...........................................................................................................................GTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAACAATGTGTCCGCACCTTTTGGCACGATGAACTATATAAGAATGACCTCCGTTACTTGAAAGTGTGGCTGGAATAT..............................................................................................GCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACACATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCAAAATAAAATTAAAACAGCAAACGAGATCTTCAATCGGGGGCTATCTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCAGAACCTGAAGAGAAATTGAAAGTATCCTACAAGAAGTTTTTCAGTCGTTCAATGGGTCGCCCCAAAGCAGCAGAG.........................................................................GAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTC.......................................................................GAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAG..........................................................................................................................................................................................................................................................................................................................................................AGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAG................................................................................................ATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAA.................................................................................................................................................................AGCACAGGAGAAGGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAA......................................................................GGAGACTGAGTTGCTGAGGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTCAGAGTTACTCAACTTGTATCTTAAAAGTGTATGGAGACAATTCCTCTTTGCCCAGTGCAAGCACCGTTACAGATGTTCTAAATATATCGAGTGGAGTTGAGGAGACATTGTTGGAATGTTTTGGTTTTTGGCAGGCTTGAGCCAAATCCTCCAGTATTTTGGTATTTAGATGGAATGATTTTATATGATTGCAACAGTTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324311" ref_strand="-" ref_description="SGN-U324311        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | CP12 domain-containing protein, contains Pfam domain PF02672: CP12 domain | chr1:28733147-28733747 FORWARD | Aliases: F14G6.16, F14G6_16(evalue: 1e-27, score=120) genbank/nr: gi|18411140|ref|NP_565134.1| expressed protein [Arabidopsis thaliana] gi|25348229|pir||F96793 hypothetical protein F14G6.16 [imported] - Arabidopsis thaliana gi|12323971|gb|AAG51942.1| hypothetical protein; 64587-64991 [Arabidopsis thaliana] gi|28466821|gb|AAO44019.1| At1g76560 [Arabidopsis thaliana](evalue: 7e-26, score=120)">
      <seq>atttcacaagaaatctgtacattttttttccaccagaaatcaacagacatccgaaaaaagtcatctataataaataattgtgatggctttgaacttgaagcaggcatctatattcccaattcatgttgctagtgtaactggatccaggaggaaaggagtgcaaaaggtgatgatgatgatgagtggatcagcaggagtaccaaagtataaggggacgcagatgagagaaaaacagctgacggaaatgatagagaagaaagtgaaggaagctaaggaggtatgcagtgaagacgccagatcggacgagtgcaaggtggcatgggatgaggtggaagaagttagctaggctaaggtgcatttgcgcatcaagcttcagcttaatcaagatccccttgaaccttactgtcaaaataaccctgacgccgacgagtgccgcacctatgaccattaattaattaattattaggatttcactcttgttgtacttggacttgtctactgtatttctctccaatttagtatgattacagttaattactagtaaaaaaccctccatctgcttttcaggtttgttatattagtgtatcttcactgctttatgaagcatttgttaggtaagttcaaatgtcatgtccatatatatacagacgaataaaacaagtagatattgagcgacgttaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81012" stop="82293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81312" g_stop="81992" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="703"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U324311" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81312" e_stop="81992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACAAGAAATCTGTACATTTTTTTTCCACCAGAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</genome_strand>
        <mrna_strand>ATTTCACAAGAAATCTGTACATTTTTTTTCCACCAGAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTAAAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319612" ref_strand="+" ref_description="SGN-U319612        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding family protein, similar to chlorophyll A-B binding protein GB:P12470 (Nicotiana plumbaginifolia); contains Pfam profile: PF00504 Chlorophyll A-B binding proteins | chr1:28734026-28735719 FORWARD | Aliases: F14G6.17, F14G6_17(evalue: 7e-138, score=487) genbank/nr: gi|15223108|ref|NP_177783.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis thaliana] gi|25406454|pir||G96793 hypothetical protein F14G6.17 [imported] - Arabidopsis thaliana gi|12323973|gb|AAG51944.1| putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis thaliana](evalue: 6e-136, score=487)">
      <seq>gactgcttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtatcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgatagtatctggtatggagaagatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctcttggtgctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttgatggttggaccagaatatgcaaggtattgtggaattgaggctttggaaccgttaggaatttacttgcctggtgacatcaactatcctggaggtgttctttttgatccattgaatctctctaaagatccgatggcttttgaagagctaaaggttaaagaaataaaaaatgggcgccttgctatggttgcctggttaggcttttatgtccaagccgctcttacgggtaaaggccctgtgcaaaaccttctggagcatatctcagatccattccacaataacttgctctccattctaaagtctctgtaagagaattcacttatccaaagttgacaatggggtttaagcctcccaggtataattgttctgtcttctttatatttaaggctgtaatatgtgaactcataattcatctgaaaatagtgtcatacctagaaaaggtgaagacatgttgtgcccagaagagtatttgaggttgtccataccaatgaaccttatatggtcttgtttataatgggatgttaaatgactattgttattgtttaaacttctgtttatgatgggatgtaaataataaggaagcaagtatgttgcttgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82354" stop="91808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82653" g_stop="82762" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="82994" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="277" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83283" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="424" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83895" g_stop="84027" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="557" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84759" g_stop="84851" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="650" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90916" g_stop="91508" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="1243" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1245" polyA_stop="1279"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U319612" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1243</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82653" e_stop="82762"/>
          <exon e_start="82828" e_stop="82994"/>
          <exon e_start="83137" e_stop="83283"/>
          <exon e_start="83895" e_stop="84027"/>
          <exon e_start="84759" e_stop="84851"/>
          <exon e_start="90916" e_stop="91508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATGGTGAGTGTAAACACTTGCTCTATGTGTATCCTTCCAGTAATTATTTCTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACATGGTATTAGAGCAGGAACGTTCCTGATTTTCTTACCTCTTTTCTTCTTCAATCTGCGCATCAGATCCTCTGTAAACTCGATTTTTGTTTTTCAAAATACAATGACAAATTCTGCATCTACGAGCACTGCATTAGACAGTGTTCCTTCATCTGGGATTGATGCAGGGAGTCACTTTTACATTCATCCCTCAGACAATCCTGGAGCAGTACTTGTACCAGTTCCTTTCAATGGCACTGGTTTTCATTCATGGCGTCGTAGTGTACTTCGTTCCTTGTCAGTGAAGAACAAGCTAGTGTTCATCAATGGTGAGTGTAAGAGACCAGAGGTGAATGGGTGAGATGTGATGATATGGTCACTTCATGGATTCTCAACTCTCTAGATCGAGACATTACTGATAGTGTTGAATATGTTAATGATGCTTTGGAATTATGGACAGAACTGGAGGATCGATATGATCAGACGAATGGAGCAAAATTGTATCAAACTCAGAAGGAGATAAATGACCTTAATCAAGGTATTCTCGATATCACAACATATTACACTCGTATGAAGAAACTTTGGGAGGAGTTAAACAGTCTGTGTGTTTCAAGTCAGTGTAGTTGTGTGTGTGTATGTGGAGCTAAAGCTAATGTTCAGAAGGCAGAGCAAGACAGACGTTTGATTCAATTTCTGATGGGCTTGAATGTGGTATATACTACAATTAGGGGAAGTATCTTGATGATGAATCCCTTGCCATCCTTGGCACAAGCTTTTGCCTTACTAGTGCAGGAGGAAAAACAACGAGAATTTAAACCAAATAATCAACTGTTTACTGAGAGTAGTTCTCTAGCTGCAGTTTCATCAAGTTCAGGAGGTAGAAGTTTTCAAACAAACTATTCTACCTCCAACACAACACCAAGAGGAAGACCTTTCTGTGACTATTGTAGAAGACCAGGACATGTTAGAGCAAAGTGTTACAAGTTGCATGGCTATCCATCTAATGACACAAATGGCTCTGCTCGTGATCAGCATAATCCAAGGAACACAGTTCAAAACACATATCCAAATCCAAGGCATAACAATAAAGGAAGAGGTACATCAGCAAACTCTGTAAGACTATCCTGTGATGGAGATACTAGTGGACAAACAAAGGAATCAAGTTCAACATCTTGTAATGACCCTCAAGGAAATGAGAACATCAGTATCACCAAGGAGCAATATGATCAAGTTTCTCACTTGCTGAATCAGTTTCAAAATGATGGAGTGTGTGGATCTGTGAACTTTGCAGGTGGTTTTGCTTGCTCTTTTTCTCTTGATTATATCAAACTTTCATGTGAATGTTTCAAAACAAGGACTGACCTATGGATTCTGGACTCAGGAGCCTCTCATCACATGACTTTTAACAAAAATAACCTTGTAAATCCAGTAAATCTACCTTATCCTATGTTAGTCAAATTACCAAATGGATATAGAGTCAAAATCACAGTGGTTGGTAGTGTACATCTTACACCTAAAATCATCTTGTCAGGAGTATTGTATGCCCCCTCATTCAAATACAATTTAATCTCCATCAACTCTCTTGTAAACCATCTTCAATGCACTGTCTCTTTTTCTAACACTTCTTGTCTGTTGCAGGCCCCTTCACTGAAGAGGCCTCTGGAAATTGGTAAGATGCATGATGGCCTTTATTTCCTCTGCTCAGATTGCTTACAAAAGAATTCACATGCTCAACATTATTCCTCTTCCCTTTACTCTTTATCCAGTAATAAAGTACAATGTACATCTCTTTCTTGTAACTCTCATTCAGATGAAATAAACTCTTCTCTTGTTGGTAATAAAGACAATGTTGCTAACAACTCTTTTATTTCTAGTTCCTTTCCTAATGATAGTGTGGATCTGTTGTGGCATTATAGACTTGGTCATGTACCCTTTGTGAAGATGAAAAATATATCTTCCATACCAGCAAAATTCTCATCATGACAACCTTTCTTCTGTCCTATATGTCCCATGGCAAGACAATCCAGATTACCCTTTCCACCAAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTACTCCAAAAGTTCACAGAACTAAGTTTGATCCCAAAACCATACCACATGTGTTTGTTGGATATCCTTATGCTACAAAGGGTTACAAAGTCTTGAACCTATCCACTCAGAAAATCCATGTCTCAAGGGATGTTATTTTCCATGAAACTATATTTCCTTTTGCCATGTCTAAAGACCCTACTCACTTCCCAAAATTTCCTTTCCATTGTGTGTCCCTTCATGATTATCCAACATCATATGATGATCAAGATTACTCCAGTAAAGAAACAACCACATCACCTACTCATATCACACCTGAAAATTCCACTTCACCTACTCATATCACACCTGAAAATTCCACATCCATACCACAGCTTAGAAGATCCCAAAGGCTACATAAGACTCCTACATACTTGACTGACTATGTTCACAATGTACCATCCTCAACTGTTTCAAATTCACAACCACCACAACCACATTCTTTACCCTTGAATGCCCTTTTCACTCTTAAACATTATGTGTCTCCTGATGTCTTTAGTTTTGATAGTCAGTCCTTTATAATGAATATTTCTCATGACTGTGAACCTAATTCATATGAGGAAGCATCTATGGATCCTGCATGGCAAAAGGCAATGACACAAGAGTTCCTTGCCCTGCATGACAACAATACTTGGACTCTCACAAACCTGCCAAAGGATAAGAAGTCTGTTGGTTGTAGGTGGGTTTACAAGGTTAAACACAAGGCTGATGGAAGTGTAGAAAGGTATAAAGCAAGACTTGTAGTAAAGGGATATACTCAACATCATGGCATAGACTATACAGAAACCTTCTCACCTGTGGTCAAGATGACCACTGTGAGAACACTTATTGTTGCTGCTGCAAAGAAACAGTGGAACATACATCAGCTTGATGTGAACAATGCCTTCCTACATGGAGATTTACATGAAGAAGTGTATATGGACATTCCACCAGGTTTGGCCACTCCTCACAAGGATTTAGTTTGCAAATTAAACAAGTCATTGTATGGTTTAAAGCAGGCTAGTAGGCAGTGGTATGAAAAGCTGACTGAGGCACTACACACAAGAGGATATGAACATTCTCCTCATGACTATTCACTGTTTTACAAGAAAAGAGGTGCATCTAATGTCTTTCTAGGTGTTTATGTGGATGATATCTTACTGACAGGAACAGACACTAATGAAATTGATGAGCTAAAAAGGTTCCTTGACAATCAGTTTAAGATCAAAGATCTTGGCAGACTACATTATTTTCTAGGCTTAGAAGTCTTGTACAAAGATGATGGGATTCTGGTTTCTCAGAGAAAGTTTGTGTTGGATCTTCTCAAGGAGTTCAATTGTGATCACATGGCTCCTTTGTCTTCTCCACTAGATCCAAATATCAAGCTAAGATCCCATGAAGGGAAAGTTCTGGATGACCCTACTTATTACAGAAAACTAATTGGCAAGTTGAATTTCCTCACACATACTAGGCTTGATCTCGCTTATGGTGTACAACTTCTCAGTCAGTACATGCAAGATCCTAGAGAGCCTCATCTACATGCTGCTTTTCATATGTTAAGATACCTCAAGAAAGATCCTACTCTAGGTGTTTTCATGTCATCTGCTGCAAACTTTGATGTACAAGCATATTGCGATTCTGATTGGGCTGCTTGTCCTGATTCAAGGAAATCTGTTAGTGGTTACATTGTATTGTTAGGCGACAGTCCTATTAGCTGGAAGTCCAAGAAACAAGAAACAATTTCACTCTCTTCAGCTGAAGCAGAGTACAGATCATTGAGAAAAGTAGTAGGTGAATTAACCTGGTTGCAAAGGTTGTTTGAAGAGCTGAATATATATCAGACTGCACCATTTCCTGTGTTTTGTGATAGCCAAGCAGCCATACATATTGCTAAAAATCCTGTTTTTCATGAACGTACGAAACATATAGAAGTGGATTGTCATTTTGTGAGATCAAAACTCCAAGAAGGGCTCATTTCATTACATCATGTTGATACTACTAATCAGTTGGCAGATGTTCTTACAAAAGCACTTACTGGGATTAAGCATTCTACAATTCTAGACAAATTGGTTTCGATCACCTCTGCTCCAATTTGAGGGGGGGTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACAATTTCAATGCCGTTCTTCATAAAAAAAAAAGAATTATTTCAATTGCCGAATGTGTTGAATGTGAATCACTTTCTGGTTATTTGAATTCTTCTTGTAAACGGTGCATTTTATCTCTTGCAATACACTCATTGTGGGACAAGGTAGGCATTTTGCAGTCGTGGAGATGGTTGCAAGTACAATGAATCTATGAGCTGAAGTAATGCTTTTAGCTCAAGATACAGTTTTCCAAGGTTAAGATAGTGACCCTATAGATCAATCCCTTTCTAGAAAAGCCAATGTAGCTTTGTGTTCAAATGCGTCCATACAGCTGATGCTTGATTGGTTGAATATGATCAATTGATGTCTGCTTCCTTCTGCCATTCTTGTCATAATAATTTAACTGTGCCGATCGAGCAATGCATTTGAGAGTGATGATTTTGTTGAAAAACATTTAATGGTCCATTGGGATAGAATGCAAATGTTGATCTTAAGTTCGAATTAAATGTCTGTTATTGCATTCAAGGGACAGCTTGCTATTTTTCTCTTAAAATCCTAGTGCCAAATGACATATTGAATAATTGTTTATGAGCTATAGCTGGTGAACATGTTGAAACAATTCTCATGGAGATAATCCCATGCCTAGAGAAGAAATAGGACAGTAAATTCTGTAACTGTAGTATATAATCTGGCCATTTCTACACAAAAGAAACCACCATCTAGTTGGAACTTGACTTTGGAAATGGCTTTTTTCACATGAACAATGAGGGAATTTTTACTTGATTTCTTCTGTTCTTGCAATTAACTGTTCTTTCATACTTTTCTGTGCATAGGTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAACTTCTGTTTATGATGGGATGTAAATAATAAGGAAGCAAGTATGTTGCTTGTT</genome_strand>
        <mrna_strand>GACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG..............................................................................................................................................TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345730" ref_strand="+" ref_description="SGN-U345730        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|53689715|gb|AAU89730.1| putative polyprotein [Solanum tuberosum] (evalue: 2e-42, score=175)">
      <seq>aaaaacacacaccactactggcatttttgaactattacatgttgacatctggggtccatatcaaacaacaactcatgataacttcaagtatttcattaccttagtagatgactttagtaaatctacctggacacaacttctaagctgtaaaagcaatgctttccatgtccttaaagcctttatactcatggttgagaaccagttcagcaccactgttaaaaccatcagatcagataatggtttggaattcactagcaatgaaaccactctattttttcaatccaaagggatcatccatcagaaatcctgcccctatactcctcaacaaaatggtgtggtcgaaagaaagcacaaatttattcttgaaacagcaagggctctactttttcagtctaaactcccagtgaaatattggagtgaatgtaacttgcttccacatatcttataaatagactaccttcttttcctctccacaataaaactccatatgaaattttatataaacacaaacctatctactctcacctaaagagttttggatgtttatgttatcctactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="86884" stop="88043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87184" g_stop="87743" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U345730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87184" e_stop="87743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</genome_strand>
        <mrna_strand>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327877" ref_strand="+" ref_description="SGN-U327877        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14224299-14226324 FORWARD | Aliases: F4P9.34, F4P9_34(evalue: 9e-114, score=406) genbank/nr: gi|18403319|ref|NP_565768.1| expressed protein [Arabidopsis thaliana] gi|20196847|gb|AAB80674.2| expressed protein [Arabidopsis thaliana] gi|21537058|gb|AAM61399.1| unknown [Arabidopsis thaliana] gi|22655220|gb|AAM98200.1| expressed protein [Arabidopsis thaliana] gi|31711902|gb|AAP68307.1| At2g33570 [Arabidopsis thaliana](evalue: 7e-112, score=406)">
      <seq>taaaactccaagtaatttggtagtgacattgctcgccttcactcttgtgatgctcatttggaatctccaaccttactacgataccatccttaatccccctgcatcctccaacattaccgaccctaacaaacgaaccttcattacctacggcaatgccgcctctctcttcgtccagatgggagcctatcgcggcggtcccactactttcgccgtcgtcggtctcgcttccaagccgcttcacgtctttggccgcccatggtataaatgcgagtggatccccaatactaatacaaactcatctaaggccaaagcctataagatcctccctgactggggttacggccgtgtctacactgtggtggttgtgaactgcacatttactgtgaatcctaaccttgataataacggagggaagctcattctctacgcttactatagtgagtcacccaagagatacgagaaaatcacagcattggaggaagcaccagggtcttacaaccaatccaagttcagcccgccatatacctacgagtatctgtattgcggttcctccttgtatgggaatttgagtgcatctaggatgagggagtggatggcctatcacgcctggtttttcgggcccagctcccatttcgtgtttcacgacgccggcggggtgtcatccgaggtaagggccgtgctggagccgtgggtacaggctggtagggtcacgcttcaggatataagggaccaatccgagttcgatggctactattacaaccagtttttggtggtgaatgattgccctcatcgctacagacactctgcctattggaccttctactttgatgttgacgagtacatatatcttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="94189" stop="95642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94489" g_stop="95342" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U327877" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94489" e_stop="95342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTCCAAGTAATTTGGTAGTGACATTGCTCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTCAGCCCGCCATATACCTACGAGTATCTGTATTGCGGTTCCTCCTTGTATGGAAATTTGAGTGCATCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCCGGCGGGGTGTCATCCGAGGTAAGGGCCGTGCTGGAGCCGTGGGTACAGGCTGGTAGGGTCACGCTTCAGGATATAAGGGACCAATCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCTCCATCGCTACAGACACTCTGCCTATTGGACCTTCTACTTTGATGTTGACGAGTACATATATCTTCCTG</genome_strand>
        <mrna_strand>TAAAACTCCAAGTAATTTGGTAGTGACATTGCTCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTCAGCCCGCCATATACCTACGAGTATCTGTATTGCGGTTCCTCCTTGTATGGGAATTTGAGTGCATCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCCGGCGGGGTGTCATCCGAGGTAAGGGCCGTGCTGGAGCCGTGGGTACAGGCTGGTAGGGTCACGCTTCAGGATATAAGGGACCAATCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCCTCATCGCTACAGACACTCTGCCTATTGGACCTTCTACTTTGATGTTGACGAGTACATATATCTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330546" ref_strand="+" ref_description="SGN-U330546        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>atcaaggattttgagcgaaatactatcaatattaatgcagctcccgaccataccaataactcataggaccagttatttcacccttacatagtacagcagtattgtaccataattttagttaccacagtgaagagaaaggaactggtgaacaagtgtttcagtagtagtgttcatccctactcctaattcttgcaactcctgtagggtcaccacactttatttctgctggctggatttggttattaatatcaaatcattcatttgtatccacatattgcaaagttaggttgatttgggaaaagagagagatgaggatttgtctgtaaatggtaatcgttaacattttcttttgcggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="95917" stop="96877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96217" g_stop="96567" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="374"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U330546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96217" e_stop="96567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATACCAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTT</genome_strand>
        <mrna_strand>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATACCAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320956" ref_strand="+" ref_description="SGN-U320956        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:7346145-7346957 FORWARD | Aliases: F9H16.19, F9H16_19(evalue: 7e-31, score=130) genbank/nr: gi|13699079|dbj|BAB41200.1| TMV response-related gene product [Nicotiana tabacum](evalue: 7e-60, score=233)">
      <seq>cttcctcctcgaatatcgtcgatcaaaagcagctgaccagctacgtcatctcaattggtggagagctccgtcaatatagcgttcccatcaacgtctctcaagttcttcaatctgacatctcttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatatagtaaatacaaaacaaatatatattttacatatatacgattaaatttccttgtatgtaaatggtacttaattaattagcttgtacaacaaaaaaaaccatgtattacttattagtacagtttaaccaaaaaaatctacacttgacgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104134" stop="105528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104434" g_stop="105227" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="795" polyA_stop="805"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U320956" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104434" e_stop="105227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAACCATGTATTACTTATTAGTACAGTTTAACCAAAAAAATCTACACTTGACGATAC</genome_strand>
        <mrna_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAAAAAAAACCATGTATTACTTATTAGTACAGTTTAACCAAAAAAATCTACACTTGACGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324900" ref_strand="+" ref_description="SGN-U324900        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF04784: Protein of unknown function, DUF547 | chr1:7371788-7374093 FORWARD | Aliases: T22I11.12, T22I11_12(evalue: 1e-22, score=104) genbank/nr: gi|8886996|gb|AAF80656.1| Contains similarity to an unknown protein F14G6.22 gi|6642679 from Arabidopsis thaliana gb|AC015450.  ESTs gb|AI994240 and gb|T42814 come from this gene (evalue: 8e-21, score=104)">
      <seq>tgtgttggcatttaatgcatttggtttacctatccctactccatcttctttgtcaatctcgaagtcgaagattattacatataattgtgtcggctggaattggattgcccctgcagctcctcagtattgatataccttcactccatctgattaaccatttttaattaataataaaaactactcttctttcagagctctcatgtcctcaatatgtctcccacaccactagaaccagtacattataaccatcattctcccaactccaatcatactcccaaattccagcgcaacttgcagtcttccatggaattgatgaaagaaattactactctcgaaattgagataatgcgtttggaacgatatcttctctcactatatcggacagctctcccgcttgtattggaaaataatcagaaaatcaagataagctcccctacccagtgtacaacacaccaatcatactccgatgttgaaatggatacgtgtgcggatctaatctccgctgcacatgctttggctggtgaaaaattaacggattctgcccaccgtagccttgcggatcacctcactgcctctcgcatggatgaccttcttagttatcctgataggctgtctgaagaaatagtcaaatgcatatcttgtatatactgcaaatttgccaatcccaatattcttgctccaaagggattatcagtttcttctacttcgtcattgtcatcatcaagcacattttctccgagaaatctttcgggcagctggagctcacatcacaatgaggagagcactgagcagtatgaatttgaagtgatagaaattttgaagatatgtctagatgatgatagtttcaattatgccacaacaatgctgcataagttcaggacactggttaagagccttgaaaaggttgatccaagaaacaagtaatccaaggagattattcatttaactgtcaatattagtgttgtacttatataataaaaatatttctctcatttaattgcgaagtcatgtaagcatcattatatatactgtgtgcgggtggttcagatctttccactaactacatttctctctttaagtgttgttttcagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="106854" stop="111371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107154" g_stop="107381" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107382" i_stop="107447" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107448" g_stop="107504" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="285" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107505" i_stop="107689" i_length="185">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107690" g_stop="107926" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="522" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107927" i_stop="108091" i_length="165">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108092" g_stop="108447" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="878" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108448" i_stop="108800" i_length="353">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108801" g_stop="108840" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="918" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108841" i_stop="110890" i_length="2050">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110891" g_stop="111074" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="919" r_stop="1102" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U324900" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1102</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107154" e_stop="107381"/>
          <exon e_start="107448" e_stop="107504"/>
          <exon e_start="107690" e_stop="107926"/>
          <exon e_start="108092" e_stop="108447"/>
          <exon e_start="108801" e_stop="108840"/>
          <exon e_start="110891" e_stop="111074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTAGTAAGCTATACATTACTGTTATTGTTGTTATTATTATTTTCATTTACCAGATTTTGATTCTTACAGGAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAGGTACATACATACATTGCTAGTATTTCTGTATTAGACTAGCTACTTTAATTTGTTGTATGCAATTCTAATTCAAGGAAACTCTTTGATATTTCAAGTTCACAGAGAATTTTTCAACCCTCATAATTTTTTTTGTCTGATATTGGAACATTGTAGAATGAGTCTGTAATAGGCAATTCCTTTTTCAGCGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGTGTAAGTGATCAGATTCAGACTGCCAAAAACTCATCGTCTATAAGGGTCAATACATCCAACTCCTACACTTTTGACATATATACTATCAGTATTTTCTTTCAGTTAGAATTGTCTCACTTGTCTTTCCTCAAGGCATTAATTTGGTAACAAAGTGTCGGTCTGCAGGAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAGGTTATTTGCAACAAACACAAGTAGTTCAAATAGAGTTAAAGAGTACAAAAATCTTCAATACCTGCTAGTGTGGACTTGATTAAAAAGCATGTTAAGAAGTGTTCGACAAGCTTAATTCACCAATTTGAATTTGTCATACTAATTTGAAAGCTGTAAAATGTTCCATCTAAATGGTAAGTTCTACTGCATCAGAAATTGTTTTTATAAATAATTGTCACTTTTCTCCCTCCTTTCTCCACCAATCAAGGCTAAAGAGAAGATGCAACTTCTAAATGGAGAAATGACAATACAATCTGAATATACTCAATATAGTAGTATATAAGTTTTATTTTTACTACGTTGATGCTCTGCAGGACACTGGTTAAGAGCCTTGAAAAGGTTGATCCAAGAAACATGACGCGTGAAGAGAAGTTAACATTCTGGATTAATATTCACAATGCCCTGGTGATGCATGTAAGATTTTCTCAAAGATAACTTTTCAACATTAGCTTAGTAAAGTTTTACCCTGAAACAAATTGATATGGATTATCCAGTATTGATGAAAAACATTTTGCTTACCAGACTACAAAATCATCCAAGGTGGAGCTATTGTTTTAAAGTTTCAACCTTTTTATTTATTCGTTTCGTACTCTAATTGGGAGGTCATGACACTCTCAGTTATACTTCTCGTCGCCAATACCATACTAGGACTAAATGTGTTGTTCAAATAATCACACATGAAGTGCCATTCTGAAATGCATTATGCGTCCTTTTGATTGGCTAAGTACGTAGTGTACTTTATACTAGCATCAGCTATTCTTGCACTCATTGCTCAAGACTAGCATTTGATTTGGTCTCCTAATATGGGGACTACAGTGTTTCTCTTTCTTTTTTAACTATTTAGTTCATCCTATTGAAGCCTGTTATGAGGTACTATATGACTTCTTTTCAGGCTTATTTAGCCTATGGAACTCAAAATTCTGTCAGAAGTTCTTCAATCTTGAAGGTAAAAGGAATAGCCCTTATCTTTTTTTTAAAAAAAGCATTTACTTATATATAGTATCAAAAAATCTGAGTTTGTCATAAAACTACTGCAGGCAGCTTATAATGTGGGTGGTCATTGCGTAAATGCTTATGTCATACAGAGCTCCATATTAGGGATACAACCACACTATTCTGCACCGGTATGCTGAATGCTAAGTAAAATCCTATTCTAAGATTATCTTACCTTTTCAAAAAAAAAACAAAAACGAGAAGCATCCTATTACTAGATTGACATGCCTGCGTCATTTCATGATAAAACTATTTTACTAGGTTTCTTAGCACTTCTAGCTAACTTGCTTGTGGAGCACCAGCGTTACATTCTCTTAATTAGTGAATTGTTCTTCAATGCTATATTAGTTAGAGAAATGCTTGAAATTATTTGCTTAATAATCTGATCTTCCTGTGAAGGAAAGAAAATGCTAACAAAAACAGACAAGTATAGCTTGTTAAATCATAATTATGCTTGTAAAGAGGATGGTCTTATCCAACATATTTTTTATTGAGTGGTTCCCACTTCCCAGCAGTTTCGCATCTATATTTTGTAAGTTTTACATTCAGATACTATTGATATGAGTTTGGCTCCCCCGTATGAACTACAACCTCCATCTCAATTCTTTTAACCTATTTTCTTTTTTAGTTCGTTTAAAAAAGAATGACTCTTTGGTACATTTGACATATTTTAATTTAAGACCACAAAATTCAAAATTCATTATTTATTTTCTTAAACTCTGTGTCTGGTCAATACAGGTAAAACAAAATTAAACTGAGGAGTAACAATTAAAATACAAAAGGGTGGGATAGGGAAAAATAATTGTTTAAAAAGGAGGAGGAACCTTTGTAGCATTCCCTGGATTCTATTAATTATGCGTTTTATGGACTCGATCCTTTCTCTAATACAACATGAATGCAGAGGCTACGGACGCTCTTTTCTCCAGGAAAAAAGTTTGCGACAGGAAATTGTAGACATACATATGCGATTGAGTACCCTGAGCCACTTGTTCACTTTGCGCTGTCTTTGGGTGCATCTTCTGATCCCGCGGTAATGTTCCTGCAAGCTATTAGTTTAAAAAATTCATGGACTTCGCATTTCTAGTATGCATTTTTAATGCAATATGTTGACACGTGCAGATTCAGGTTTACACAGCGAAGAACGTATTTCAGGATCTTAAAGTAGCAAAAGAGGAGTTTATACGGGCTACAATTTGCATTAACAAGGACAAAAGGATTTATCTGCCTAAAATCATATGCTATTTTGCAAAAGATATGTCCCTGAGCACGGATGAAGTAGTTGAAACTATCATGGGATCTCTACCAGAAACTCAGATGAAACTAGTCAGATCCTGCATGAAGGAGTACAGAGCCGATAAGTTACTTTATTGGTTGCCACAAAGTTGGACGTTTAGATATTTGATCCAGAAACAAGTAATCCAAGGAGATTATTCATTTAACTGTCAATATTAGTGTTGTACTTATATAATAAAAATATTTCTCTCATTTAATTGCGAAGTCATGTAAGCATCATTATATATACTGTGTGCGGGTGGTTCAGATCTTTCCACTAACTACATTTCTCTCTTTAAGTGTTGTTTTCAGAAAATATATCA</genome_strand>
        <mrna_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTA..................................................................GAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAG.........................................................................................................................................................................................CGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGT.....................................................................................................................................................................GAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAG.................................................................................................................................................................................................................................................................................................................................................................GACACTGGTTAAGAGCCTTGAAAAGGTTGATCCAAGAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAATCCAAGGAGATTATTCATTTAACTGTCAATATTAGTGTTGTACTTATATAATAAAAATATTTCTCTCATTTAATTGCGAAGTCATGTAAGCATCATTATATATACTGTGTGCGGGTGGTTCAGATCTTTCCACTAACTACATTTCTCTCTTTAAGTGTTGTTTTCAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325076" ref_strand="+" ref_description="SGN-U325076        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | reverse transcriptase-related, similar to reverse transcriptase (Arabidopsis thaliana) GI:976278 | chr2:735410-736545 FORWARD | Aliases: T8K22.5, T8K22_5(evalue: 2e-08, score=57) genbank/nr: retrotransposon(evalue: 1e-18, score=85.5)">
      <seq>cgggctgcaggaatttcgcacgagaattggatgactaagaatgtcataacaccctatggatgttcagtctggagagctattaggaatctttggccaaagatacaaatcagaactaaggtgaggataggaaatgggcagaaaacctcttttggcatgacaagtgggcagggctttgaacaatgaaacaacaacatctggagctatacactctaagccagcaacaagaagccacagttgccatgatgtggactggacaaggatggaatctatatctaaggagatatctgaatgattgggagattgggaggataacagaattctataactcagtagcaagtttcaacaatctgactgacgaagtggacagactagaattgaacagaaacagtaagggaattttttctgtcaaatctgcatacagggagctaatgtagaagtggtgaaggaaagagattggccttggaagatgatatggaaaccaaaaattccctacaaagttaactgtttcatctggcttctggccaaagaagcagtgttaactcatgataacctgaacaaaaggggtcaccagctaaccgctggctgttttttatgtggggaacaagttgagacaatcaaccatctttttttgcactgcaaatggacagaccagctttggaggatgttcatcagttggaaagggattagttgggtgaaacctggaagcattgcagacattctaagatgctggaatgtggatggtaatgtgtgcaagaaggaagaaaaatggaagatcgtcccagcatgtatttggtggtcaatttggattcagaggaacaaaaggtgctttgaggggactcaaaacaagattcagaatcttaaaatgaattgtttatgcctttattatttttggtgtgagcaaaaactactagctcaaacagaagatatttgtgatgtttttaactttttaaaggcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="120975" stop="119402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120667" g_stop="119701" g_length="967"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="958" r_length="936" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-U325076" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120667" e_stop="119701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGGATTGACTAAGAATGTCATAAAACCTTATGGATGCTCAGTCTGGAAAGCTATTAGGAATCTTTGGCCAAAGATGCAGATCAGAAATAAGGTGAGGATAGGAAATGGGCAGAAAACCTCTTTTTTTGGCATGACAAGTGGGGCAGGGCTTTTAACAATGAAACAACAACATCCGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGCATCGATATCTAAGGAGATATCTGAATGATTGGGAGATTGGTAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATGGAACAGAAAAAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGTAGCTAAATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAATGTTAACTGTTTCATCTGGC-TCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAA-AAAAAGGGTCACCAACTAACCGCTGGCTG-TTTTT-TGTGGGGAACAAGCTGAGACAATCAACCATCTTTTTTTGCACTGCAAATGGACTTTGGAGGATGTTCATCAGTTGGAAGACCAGCTTTGGAGGATGTTCATCAGTTGGAAAGAGATTA-TTGGGTGAAACCTGGAAGCATTGCAGACGTTCTAAGATGCGGGAATGTGGATGGTAATGTGAGCAAGAAGGAAGAAAAATGGAAGATCGTTTCAGAATGTATTTGGTGGTCAATTTGGATTGAAAGGAACAAAAGGTGCTTTGAGGGGACTCAAAACAACATTCAGAATCTTCAAATGAATTGAATTGTTTAGGCCTTTATTATTTTTGGTGTAAGCAAAAACTACTAGCTCAAACAGAAGATATTTGTGATGTTTTTAACTTTTTGTAAGGCACAA</genome_strand>
        <mrna_strand>AGAATTGGA-TGACTAAGAATGTCATAACACCCTATGGATGTTCAGTCTGGAGAGCTATTAGGAATCTTTGGCCAAAGATACAAATCAGAACTAAGGTGAGGATAGGAAATGGGCAGAAAACCTC---TTTTGGCATGACAAGT-GGGCAGGGCTTTGAACAATGAAACAACAACATCTGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGAATCTATATCTAAGGAGATATCTGAATGATTGGGAGATTGGGAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATTGAACAGAAACAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGGAGCT-AATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAAAGTTAACTGTTTCATCTGGCTTCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAACAAAAGGGGTCACCAGCTAACCGCTGGCTGTTTTTTATGTGGGGAACAAGTTGAGACAATCAACCATCTTTTTTTGCACTGC-AA---A---T----G--G---A-C-------AGACCAGCTTTGGAGGATGTTCATCAGTTGGAAAGGGATTAGTTGGGTGAAACCTGGAAGCATTGCAGACATTCTAAGATGCTGGAATGTGGATGGTAATGTGTGCAAGAAGGAAGAAAAATGGAAGATCGTCCCAGCATGTATTTGGTGGTCAATTTGGATTCAGAGGAACAAAAGGTGCTTTGAGGGGACTCAAAACAAGATTCAGAATCTT--AA--AA-TGAATTGTTTATGCCTTTATTATTTTTGGTGTGAGCAAAAACTACTAGCTCAAACAGAAGATATTTGTGATGTTTTTAACTTTTT-AAAGGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342863" ref_strand="+" ref_description="SGN-U342863        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile: PF00515 TPR Domain (5 copies) | chr1:28764593-28769680 FORWARD | Aliases: F14G6.23(evalue: 1e-30, score=130) genbank/nr: hypothetical(evalue: 9e-29, score=130)">
      <seq>gcaggaaatgctgatgatgctattgaagaatgtaagtatttggaaagcaaaggtcttctggatgtagaaagtttgcagctttatgcgctttcttattggaaacttggaaaatatgaccttgctctttctatggcaaagagactggcctcatctgctttaccaacggagcatccattggctgctgcctccgtcagtttcatctgtagattagtgtatcatatttcagggaaggaattagctataagaaacatattacaactgccaaaaagagccttccagagttcaagagttaggcttgtagcatctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttcatgtgttcgtgagtctctttcatctaacaaagagattgctgcgctggatttcctggccacactgggcttactagtcaaacatggatctaaggactgcctagaagttcagaagggggtcaattatctaagaagagctcttcatacttctccaaacagtcatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="123027" stop="124587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123327" g_stop="123378" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123379" i_stop="123738" i_length="360">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123739" g_stop="124112" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="426" r_length="374" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124113" i_stop="124195" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124196" g_stop="124287" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="518" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U342863" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123327" e_stop="123378"/>
          <exon e_start="123739" e_stop="124112"/>
          <exon e_start="124196" e_stop="124287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAATGCTGATGATGCTATTGAAGAATGTAAGTATTTGGAAAGCAAAGGTATGATTCTTTATTATATTTGCGTTTTTGTTGTTCCTAGTGAGGAATTACTGCTAAAGAAAAATATCATGGTGAGGGATTAGGGCCTGCTTTTTGTCTGTGAACAAAATAACAATTATGAATTGAGTACTGAATTGAGACTTTATATGAGTGCTGAACTACTAGTTCGGCAAAAAGGTTAGGCGTTGTGTCTCTCTTAGTGTTCACTTTAACTAGTTGCTGAAGTCGTGGAGTAGCATCTTGCTTAAAATGTATTTGATATTGTTGTCCTACTTGCATGCTTTTGCTCTCATAATCGAAAATGCCCCATGAGAATGCTTATTGCTTTATTCATTATAAACCTGTTTCCATTTTCGCTAGGTCTTCTGGATGTAGAAAGTTTGCAGCTTTATGCGCTTTCTTATTGGAAACTTGGAAAATATGACCTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTATATCATATTTCAGGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATTTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTAGTAAGTTTTCTATTCCAGTTGCGTCTTTTTACTTGATCTTGGGCCTCTAAGTGTAAATCCGGACTTCCTTATCGGGGATTTAGGTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGAT</genome_strand>
        <mrna_strand>GCAGGAAATGCTGATGATGCTATTGAAGAATGTAAGTATTTGGAAAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................GTCTTCTGGATGTAGAAAGTTTGCAGCTTTATGCGCTTTCTTATTGGAAACTTGGAAAATATGACCTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTGTATCATATTTCAGGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATCTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTA...................................................................................GTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kbm9Jk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328858" ref_strand="+" ref_description="SGN-U328858        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile: PF00515 TPR Domain (5 copies) | chr1:28764593-28769680 FORWARD | Aliases: F14G6.23(evalue: 5e-88, score=321) genbank/nr: gi|15220960|ref|NP_177789.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana](evalue: 4e-86, score=321)">
      <seq>cctcgagactaggagctcttcatacttctccaacagtcatttgataaggacccttcttggctatctgttagtatccagcagggaatggaaagatgttcacatttcagctcgatgcttcagagtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttcagatttttggtgctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatctgtagagaaaattcaacactggagtgcaaaacgatcaagctgctgcagaagtgtgtccatcaggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcgcgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggctcttcgaagtgagctttatgcaaaagatgatatttcttcccagtaccaaaagttccagcttctgctttgtgccgcggaggttagtttgcattgtgggaataatttcaagtgcattatgcatgcaaaaagtactctagagatgcagcttccagataactacctcttctttgcacacttgctactatgtcgtgcctatgctgtagaagataattattcaggacttcatgaagaatacataaggtgcttgcagctaaaaactgataatcatattggttggatttgtcttaagtttcttgaaagtcgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtctggcaaagaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaactgcagcttggaatggggaatttattgatgcagaagagtctattgcgcaagcttgcttgttggcgggtggcgagagttgcctttttcttagccatggtgttatttgcatggagattgccaggcagcagtccgattcagattttttatcacttgctattagaagtctgaagaaagcaaaagacagttcttcaacgccactaccctttgtctcactgctactggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-31KOH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="123952" stop="127732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124255" g_stop="124290" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="48" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125957" g_stop="126199" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="291" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126393" g_stop="127036" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="935" r_length="644" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127037" i_stop="127303" i_length="267">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127304" g_stop="127432" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="1064" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-U328858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1052</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124255" e_stop="124290"/>
          <exon e_start="125957" e_stop="126199"/>
          <exon e_start="126393" e_stop="127036"/>
          <exon e_start="127304" e_stop="127432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTCATACTTCTCCAAACAGTCATTTGATAAGGTACATTTTCGTGTTGTCCACTTTGGCATGAACTAGTGAATTGTGCTTGATCAGAGCACTTCAGATTAATGGGTGCAATTCATTTTAATCATGGTTTGCTTTAGATTGGAACAATAAAAAACTAAGCCTCAGTTACTAATAAGTCGGGGCTGACTACATGAATCCTCACGGACCATGTCTTTTCATTTATTTGAATTATGATTTGCTTGAGATTGAAGAGTTGGCTCATTTTGGATGCAATTTTTGTGGTTGTTCCAGATTGAAGTTGGAAAAATACGTGACTTTCTGTTTTTATTTCAGAAAGCATTTTGTTTCCTTTGCTGCTTGAGAAATAAATGCATCTTATTGTGGTGGTTTGAGTTAGGCCTCATTTGTTTGCACTTAAAGAAAGTCTGAATCTGTATGATTTAGATCGTATGCCATTAAGTGCATTCGTTTTCATTAAGATTTAAGTAATTATTTTGTATGAAATAAATCTTAATCATTTAAGATCTTGAATAGAGTCTTAATATCATTAGAGATATTTTTGTTTGGATAGTTTTCATCACCACTCTATCTACAATCACCAGCCACCACCACTAACATGCTCTGCCATCACAACCACTACCATCATTGTCAACCAACATTACTGTAACCAACCACCGATCCCCAACCAGTGGCAACCACCACTACTGTCAGTCGCTACCACACCTATCAAGTTAAAATCTCAGCAAGAGGCAAAAAAAAAGCCAAGTAATCCTGTCCCGTTGGCTAAGGCTGTGGGAAATCTGCAGTTGATTGGTCAACGTGAGTGCTGGTATGGCCACTATTATTATTATAAAAAGATAATAAATAAATTACTGAAGTCATGATTCTTGGTCACAGTCTGTCAGTTCCTACTTGAACTCCTGCAAAGAATTCAATCTTCTACATTAGCATCACTTAATTTACACATCAATGTCCATGCTTGCTATTTAACTCGGGGTGGTAGTTGGAGCGCTTGGCGTTTGCTAAGTTTTCTCGGCCTTTGGAAATCTTTGCACGGATGTCCAGTTCATGCTCAAAAACTCTTGCTGAATATCATTGGTCCGTCTTCTCTCATTTTGCACAATTGATTTGTTCCACGTTGATTTTCGTTTTCTTATATAATGGTAACTGCATAGTCCTCACAAAACTATGCTGGCATCTAGATTTACAAAATATCCTGTGAGTCCTAATGAACCTATTTACAGTTATTCCAAAAACTCTAGTATTGACTCGGACTCCGCCACAAAAAATTCTTTACTCCAGAAATGCAAAAACATAATGTAATCAGCCTTAATTTTCTGCTTAGAGTTAGATTATCCCTCAAAACCCCTTGCATTCCTTTCTCTCCAAACTGTCCACCATATTGTGGCTGGTATGACCTTGCACTATAGTTTCAACAACCCAGCAATTCATGGTGTTTCCTGGCATTAACCACTTCTTCTTTCCCAGATTTTCGTTCGTCTTTCACTACGGGTCCATTTCAATCATGGTGTAATTTGTTTGAATTACTTGCTGTGTTGATCTTGACACTTGAAAGAGTTTAGCGAAAATGCATTGTTGATTGCTATTTGTATATATGGAACTTATTTCCATCTGTAAATTTGTGTTCTTAGTATGATGATTAAAGTTGATTAATCTTCTGCAATATTCTGGTGAATAGGACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAAGTAATCTTCTTTATCCACATGCTGTGGGGCTTTATTTATGAAATTTTATTTCTATTACACACTTTCTGTGGCTCACTTTATTGATAAATAATCTCATACTTCTGGTGAGATGGGAGGAAGACACGTGAATTTATTCCATGAAATATATGCCAAAGCTGTTCTGTGCGTCTAATTTAAATGTTTATATTTATAGGTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGATGCAGAAGAGTCTATTGCGCAAGCTTGCTTGTTGGCGGGTGGCGAGAGTTGCCTTTTTCTTAGCCATGGTAACATTTGCTGAACAATTCTAAAACTTACTTTTAATATGCTTAAACTCTTTCCTATAAACTGACTTTTTGGTAGAAGTGTATTTTCCCATTCAAAAGCTCTTCTATTTCTCTCTGCAGAACCCACCATAATAAGTGCCCAGGGGTTGCATTCCACTGTCTGCATTTTCTTCCATCTATATCCATCTTTCTTTCTTACCCTCTGTGTGTCTATTAAAGGCTGATGGTCTTATTGGTCTGATTGGTAATGGGAATTTGATTATTCAGGTGTTATTTGCATGGAGATTGCCAGGCAGCAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGGCAC</genome_strand>
        <mrna_strand>AGCTCTTCATACTTCTCC-AACAGTCATTTGATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA.................................................................................................................................................................................................GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATTGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTCTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGATGCAGAAGAGTCTATTGCGCAAGCTTGCTTGTTGGCGGGTGGCGAGAGTTGCCTTTTTCTTAGCCATG...........................................................................................................................................................................................................................................................................GTGTTATTTGCATGGAGATTGCCAGGCAGCAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2253" PGL_stop="1074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2253" e_stop="1447"/>
            <exon e_start="1116" e_stop="1074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="2253" e_stop="1447" e_length="807"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1116" e_stop="1074" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2253" stop="1447"/>
              <exon start="1116" stop="1074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG : TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATA</gDNA_template>
            <first_frame> L  R  L  H  L  S  K  F  *  R  F  N  M  P  E  S  G  E  I  K  S  Q  A  A  K  S  D  P  Q  T  T  S  P  P  P  S  Q  Q  P  Q  T  A  A  L  P  L  K  R  P  Q  Q  L  E  S  S  P  N  P  T  T  P  S  V  T  D  P  K  D  V  T  P  T  T  I  S  S  R  I  T  E  P  D  F  I  Y  I  P  S  Y  S  R  K  S  H  L  L  F  S  F  S  F  Q  I  C  F  C  I  F  R  V  E  W  I  *  M  I  R  D  T  *  L  V  L  L  L  L  L  G  W  F  S  W  N  S  I  H  E  C  E  V  R  F  L  P  E  F  F  D  G  R  S  P  S  K  N  P  K  T  Y  K  Y  Y  R  N  T  I  I  R  R  F  R  D  N  P  T  K  K  I  T  F  T  E  A  R  K  T  I  V  G  D  V  G  S  I  R  R  V  F  D  F  S  E  T  W  G  L  I  N  Y  T  A  N  S  S  K  S  L  I  K  W  E  E  K  E  S  K  S  T  S  A  S  A  P  Q  N  A  D  A  N  G  T  S  T  D  F  T  L  P  K  K  R  I  C  N  L  C  K  T  V  C  R  I  A  C  F  A  S  D  K  :  Y  D  L  T  L  C  A  R  C  Y  V  S  N  D  </first_frame>
            <second_frame>  *  D  Y  T  C  L  N  S  N  A  S  T  C  P  N  Q  A  K  S  S  H  R  Q  L  N  L  T  L  K  L  P  L  R  H  R  R  S  N  L  K  R  L  L  C  H  *  S  V  P  N  N  W  N  R  P  Q  T  Q  Q  L  L  Q  S  P  I  P  K  T  S  L  P  P  L  S  P  P  V  L  L  N  L  I  S  S  I  F  P  V  I  P  V  S  P  I  Y  F  S  A  F  L  F  K  F  A  S  V  F  L  G  W  N  G  Y  R  *  F  V  I  L  N  *  F  F  F  F  F  *  V  G  F  H  G  I  A  F  M  N  V  R  F  A  F  F  L  N  S  L  M  E  G  R  L  P  R  T  L  R  H  T  N  T  I  G  I  L  L  F  V  D  S  E  I  T  P  L  K  R  *  P  L  L  R  L  A  R  P  L  L  E  T  S  A  Q  F  V  G  F  S  I  S  Q  R  H  G  V  *  S  I  T  L  L  T  L  P  S  L  *  S  S  G  K  K  K  S  Q  S  Q  H  L  P  Q  L  R  K  M  L  T  P  M  E  R  P  L  I  L  L  S  P  R  K  E  S  A  I  S  A  K  Q  F  A  G  L  L  V  S  L  L  I  S :   M  I  *  L  F  V  Q  D  A  M  L  V  M  I </second_frame>
            <third_frame>   E  I  T  L  V  *  I  L  T  L  Q  H  A  R  I  R  R  N  Q  V  T  G  S  *  I  *  P  S  N  Y  L  S  A  T  V  A  A  T  S  N  G  C  F  A  T  K  A  S  P  T  T  G  I  V  P  K  P  N  N  S  F  S  H  R  S  Q  R  R  H  S  H  H  Y  L  L  P  Y  Y  *  T  *  F  H  L  Y  S  Q  L  F  P  *  V  P  S  T  F  Q  L  F  F  S  N  L  L  L  Y  F  *  G  G  M  D  I  D  D  S  *  Y  L  I  S  S  S  S  S  F  R  L  V  F  M  E  *  H  S  *  M  *  G  S  L  S  S  *  I  L  *  W  K  V  A  F  Q  E  P  *  D  I  Q  I  L  *  E  Y  Y  Y  S  *  I  Q  R  *  P  H  *  K  D  N  L  Y  *  G  S  Q  D  H  C  W  R  R  R  L  N  S  *  G  F  R  F  L  R  D  M  G  F  D  Q  L  H  C  *  L  F  Q  V  S  D  Q  V  G  R  K  R  V  K  V  N  I  C  L  S  S  A  K  C  *  R  Q  W  N  V  H  *  F  Y  S  P  Q  E  K  N  L  Q  S  L  Q  N  S  L  Q  D  C  L  F  R  F  *  *   : V  *  F  D  S  L  C  K  M  L  C  *  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1893" stop="1447"/>
                    <exon start="1116" stop="1075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLLLLLGWFSWNSIHECEVRFLPEFFDGRSPSKNPKTYKYYRNTIIRRFRDNPTKKITFTEARKTIVGDVGSIRRVFDFSETWGLINYTANSSKSLIKWEEKESKSTSASAPQNADANGTSTDFTLPKKRICNLCKTVCRIACFASDKYDLTLCARCYVSND</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2226" stop="1912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFNMPESGEIKSQAAKSDPQTTSPPPSQQPQTAALPLKRPQQLESSPNPTTPSVTDPKDVTPTTISSRITEPDFIYIPSYSRKSHLLFSFSFQICFCIFRVEWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7956" PGL_stop="2673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7956" e_stop="7677"/>
            <exon e_start="7369" e_stop="7246"/>
            <exon e_start="5871" e_stop="5742"/>
            <exon e_start="5246" e_stop="5210"/>
            <exon e_start="5078" e_stop="4841"/>
            <exon e_start="4502" e_stop="4393"/>
            <exon e_start="4283" e_stop="4188"/>
            <exon e_start="3222" e_stop="2673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.425" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.573" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.455" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7956" e_stop="7677" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7369" e_stop="7246" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.425" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5871" e_stop="5742" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.573" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5246" e_stop="5210" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.455">
            <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5078" e_stop="4841" e_length="238"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4502" e_stop="4393" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4283" e_stop="4188" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="3222" e_stop="2673" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4841"/>
              <exon start="4502" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="2673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTT : GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG : GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG : GTATGCGACATATGGTACGGATTACGTTTACCCTCAG : GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAG : GTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG : GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG : GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATTATCACCAAGGTTGGTGTGACATGACCATAATTTGGGTGCAAAAGCAGTGTTGCATCATTTATTTGTGTTTGGTACTCAGAGCAGACTTTGCCAATGAAGTTTATATTATTC</gDNA_template>
            <first_frame> L  L  L  L  Y  L  L  K  S  N  W  I  V  D  Y  G  V  S  T  A  A  T  S  S  R  F  R  F  L  C  C  W  Q  W  G  S  I  L  *  F  S  F  W  G  H  H  L  H  *  G  L  C  W  R  S  C  L  G  N  S  E  *  H  P  Q  T  I  L  *  A  V  W  *  N  P  R  G  C  C  H  H  *  *  K  Y  W  P  I  Q  R  L  W  L   : C  D  F  P  G  P  *  V  Y  K  E  G  M  C  *  S  C  S  N  Y  R  W  K  T  S  K  L  *  F  G  F  V  R  A  T  S  S  F  C  A  I  W :   T  S  E  V  T  D  S  I  S  S  R  A  T  S  C  S  G  C  L  C  W  K  F  W  L  P  A  T  G  F  L  W  L  P  A  R  L  D  V  F  S  L  W  :  V  C  D  I  W  Y  G  L  R  L  P  S   : G  C  L  Q  S  L  W  R  S  T  V  P  S  Y  I  W  C  T  W  N  C  *  C  N  N  V  S  L  R  P  A  K  S  G  C  S  W  K  S  Q  L  Y  D  I  A  G  L  C  S  A  R  T  S  D  S  S  V  W  W  A  R  C  Q  C  N  D  S  F  I  H  S  N  Y  S  S  T  I  S  N  R :   C  R  S  A  C  Y  T  T  A  T  V  Y  T  T  Y  S  F  S  S  I  Y  A  R  *  R  F  *  P  K  C  R  V  R  F  Y  Q   : G  T  R  L  Q  Q  D  *  Q  Q  Q  Y  C  Y  L  R  G  R  L  L  I  *  P  C  K  L  F  T  L  H  S  R   : G  Y  K  K  S  Y  P  P  *  E  L  N  V  *  V  A  P  D  D  *  V  R  K  H  G  S  C  G  L  H  F  L  Q  H  H  V  S  R  P  L  H  S  A  G  F  R  I  T  G  R  E  S  C  I  *  G  I  L  E  *  V  S  G  S  L  L  V  A  I  N  F  V  K  N  S  H  Q  N  Q  P  V  I  Q  L  *  S  K  T  P  R  I  C  F  W  V  C  R  *  S  L  S  C  V  L  V  H  H  A  P  C  L  K  V  L  C  I  K  N  K  Q  A  L  V  L  N  L  R  F  I  L  *  F  G  C  F  I  D  D  S  *  S  K  K  L  Q  L  L  S  P  R  L  V  *  H  D  H  N  L  G  A  K  A  V  L  H  H  L  F  V  F  G  T  Q  S  R  L  C  Q  *  S  L  Y  Y   </first_frame>
            <second_frame>  Y  F  S  C  I  Y  L  N  Q  I  G  *  W  I  M  A  Y  Q  Q  Q  P  P  A  Q  G  S  G  S  S  A  A  G  S  G  V  P  F  F  N  S  P  F  G  D  T  T  F  T  K  V  F  V  G  G  L  A  W  E  T  Q  S  D  T  L  R  R  F  F  E  Q  F  G  E  I  L  E  A  V  V  I  T  D  K  N  T  G  R  S  K  G  Y  G  F  :  V  T  F  R  D  P  E  S  T  R  R  A  C  A  D  P  A  P  I  I  D  G  R  R  A  N  C  N  L  A  S  L  G  R  P  R  P  S  V  Q  F   : G  R  L  R  S  P  T  P  F  P  A  G  L  P  A  A  R  G  A  Y  A  G  S  F  G  Y  Q  Q  P  V  S  Y  G  Y  Q  Q  G  L  M  Y  S  P  Y  G :   Y  A  T  Y  G  T  D  Y  V  Y  P  Q  :  G  V  Y  N  P  Y  G  G  Q  Q  Y  L  P  I  Y  G  V  P  G  T  V  N  A  T  M  Y  P  Y  G  Q  L  S  Q  A  V  P  G  S  H  S  Y  T  T  L  Q  G  Y  A  V  P  G  H  Q  I  L  Q  F  G  G  P  G  V  N  A  M  T  A  S  S  I  P  T  I  Q  A  P  Y  Q  T   : G  V  G  A  P  V  T  P  Q  P  Q  F  I  L  P  T  H  S  P  Q  F  M  Q  G  S  G  S  D  Q  N  A  G  *  D  F  I  K  :  V  L  D  C  S  R  T  N  S  S  S  I  A  T  *  E  A  G  F  *  S  S  L  A  N  Y  S  L  C  I  L  E  :  V  I  K  S  H  T  H  H  E  S  S  M  S  E  S  L  L  M  I  E  *  G  N  M  E  V  A  D  C  T  S  F  N  I  M  Y  L  G  P  C  I  L  L  V  S  G  S  L  A  E  S  H  A  F  E  G  Y  W  N  R  F  L  A  P  S  L  *  Q  *  T  L  *  K  I  H  I  R  I  N  L  *  F  S  Y  S  Q  K  L  P  E  Y  A  F  G  C  V  D  S  H  C  L  A  C  W  C  T  M  H  R  V  *  K  S  C  A  *  K  T  N  K  L  *  S  *  T  *  D  S  F  C  N  L  D  V  L  L  M  I  L  E  A  R  S  F  S  Y  Y  H  Q  G  W  C  D  M  T  I  I  W  V  Q  K  Q  C  C  I  I  Y  L  C  L  V  L  R  A  D  F  A  N  E  V  Y  I  I  </second_frame>
            <third_frame>   T  S  P  V  S  T  *  I  K  L  D  S  G  L  W  R  I  N  S  S  H  Q  L  K  V  Q  V  P  L  L  L  A  V  G  F  H  S  L  I  L  L  L  G  T  P  P  S  L  R  S  L  L  E  V  L  L  G  K  L  R  V  T  P  S  D  D  S  L  S  S  L  V  K  S  S  R  L  L  S  S  L  I  K  I  L  A  D  P  K  A  M  A  L :   *  L  S  G  T  L  S  L  Q  G  G  H  V  L  I  L  L  Q  L  S  M  E  D  E  Q  I  V  I  W  L  R  *  G  D  L  V  L  L  C  N  L  :  D  V  *  G  H  R  L  H  F  Q  Q  G  Y  Q  L  L  G  V  L  M  L  E  V  L  A  T  S  N  R  F  L  M  A  T  S  K  A  *  C  I  L  L  M   : G  M  R  H  M  V  R  I  T  F  T  L  R :   V  F  T  I  L  M  E  V  N  S  T  F  L  Y  M  V  Y  L  E  L  L  M  Q  Q  C  I  L  T  A  S  *  V  R  L  F  L  E  V  T  V  I  R  H  C  R  V  M  Q  C  Q  D  I  R  F  F  S  L  V  G  P  V  S  M  Q  *  Q  L  H  P  F  Q  L  F  K  H  H  I  K  Q  :  V  S  E  R  L  L  H  H  S  H  S  L  Y  Y  L  L  I  L  L  N  L  C  K  V  A  V  L  T  K  M  Q  G  E  I  L  S  R :   Y  *  I  A  A  G  L  T  A  A  V  L  L  L  E  R  Q  A  F  N  L  A  L  Q  I  I  H  F  A  F  *  R :   L  *  K  V  I  P  T  M  R  A  Q  C  L  S  R  S  *  *  L  S  E  E  T  W  K  L  R  I  A  L  P  S  T  S  C  I  *  A  L  A  F  C  W  F  Q  D  H  W  Q  R  V  M  H  L  R  D  T  G  I  G  F  W  L  P  P  C  S  N  K  L  C  K  K  F  T  S  E  S  T  C  D  S  V  I  V  K  N  S  Q  N  M  L  L  G  V  *  I  V  I  V  L  R  A  G  A  P  C  T  V  F  K  S  L  V  H  K  K  Q  T  S  F  S  L  K  L  E  I  H  S  V  I  W  M  F  Y  *  *  F  L  K  Q  E  A  S  V  I  I  T  K  V  G  V  T  *  P  *  F  G  C  K  S  S  V  A  S  F  I  C  V  W  Y  S  E  Q  T  L  P  M  K  F  I  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7919" stop="7677"/>
                    <exon start="7369" stop="7246"/>
                    <exon start="5871" stop="5742"/>
                    <exon start="5246" stop="5210"/>
                    <exon start="5078" stop="4841"/>
                    <exon start="4502" stop="4405"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIMAYQQQPPAQGSGSSAAGSGVPFFNSPFGDTTFTKVFVGGLAWETQSDTLRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESTRRACADPAPIIDGRRANCNLASLGRPRPSVQFGRLRSPTPFPAGLPAARGAYAGSFGYQQPVSYGYQQGLMYSPYGYATYGTDYVYPQGVYNPYGGQQYLPIYGVPGTVNATMYPYGQLSQAVPGSHSYTTLQGYAVPGHQILQFGGPGVNAMTASSIPTIQAPYQTGVGAPVTPQPQFILPTHSPQFMQGSGSDQNAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5787" e_stop="5742"/>
            <exon e_start="5246" e_stop="5210"/>
            <exon e_start="5078" e_stop="4393"/>
            <exon e_start="4283" e_stop="4188"/>
            <exon e_start="3222" e_stop="3089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.573" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.455" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5787" e_stop="5742" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.573" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5246" e_stop="5210" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.455">
            <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5078" e_stop="4393" e_length="686"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4283" e_stop="4188" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="3222" e_stop="3089" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5787" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="3089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG : GTATGCGACATATGGTACGGATTACGTTTACCCTCAG : GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG : GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG : GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTC</gDNA_template>
            <first_frame> R  F  L  M  A  T  S  K  A  *  C  I  L  L  M   : G  M  R  H  M  V  R  I  T  F  T  L  R :   V  F  T  I  L  M  E  V  N  S  T  F  L  Y  M  V  Y  L  E  L  L  M  Q  Q  C  I  L  T  A  S  *  V  R  L  F  L  E  V  T  V  I  R  H  C  R  V  M  Q  C  Q  D  I  R  F  F  S  L  V  G  P  V  S  M  Q  *  Q  L  H  P  F  Q  L  F  K  H  H  I  K  Q  A  D  F  F  Y  L  Y  L  I  Y  A  C  M  V  A  L  H  I  I  L  S  L  T  L  I  C  I  P  S  L  S  R  C  L  T  S  R  K  K  *  S  P  T  K  I  G  V  R  G  C  I  Y  P  T  H  P  R  P  H  L  W  Y  H  T  G  Y  V  V  A  V  *  H  D  *  H  L  E  N  M  L  E  P  H  L  L  L  *  P  Q  F  Q  V  L  H  K  I  A  S  M  K  L  T  V  S  L  C  N  C  F  F  I  F  R  C  R  S  A  C  Y  T  T  A  T  V  Y  T  T  Y  S  F  S  S  I  Y  A  R  *  R  F  *  P  K  C  R  V  R  F  Y  Q   : G  T  R  L  Q  Q  D  *  Q  Q  Q  Y  C  Y  L  R  G  R  L  L  I  *  P  C  K  L  F  T  L  H  S  R   : G  Y  K  K  S  Y  P  P  *  E  L  N  V  *  V  A  P  D  D  *  V  R  K  H  G  S  C  G  L  H  F  L  Q  H  H  V  S  R  P  L  H  S  A  G  F </first_frame>
            <second_frame>  G  F  L  W  L  P  A  R  L  D  V  F  S  L  W  :  V  C  D  I  W  Y  G  L  R  L  P  S   : G  C  L  Q  S  L  W  R  S  T  V  P  S  Y  I  W  C  T  W  N  C  *  C  N  N  V  S  L  R  P  A  K  S  G  C  S  W  K  S  Q  L  Y  D  I  A  G  L  C  S  A  R  T  S  D  S  S  V  W  W  A  R  C  Q  C  N  D  S  F  I  H  S  N  Y  S  S  T  I  S  N  R  Q  I  S  F  I  C  I  L  Y  M  H  A  W  *  P  C  I  S  S  Y  H  *  H  *  S  A  F  Q  V  Y  Q  D  V  *  H  L  E  K  S  S  P  P  Q  R  *  G  *  G  A  A  Y  T  P  P  I  P  D  P  T  C  G  I  T  L  G  M  L  L  L  Y  D  M  I  D  I  *  K  T  C  W  N  L  I  Y  F  C  S  L  S  S  K  S  Y  I  R  L  Q  V  *  S  *  Q  Y  H  Y  A  T  V  F  L  F  L  G  V  G  A  P  V  T  P  Q  P  Q  F  I  L  P  T  H  S  P  Q  F  M  Q  G  S  G  S  D  Q  N  A  G  *  D  F  I  K  :  V  L  D  C  S  R  T  N  S  S  S  I  A  T  *  E  A  G  F  *  S  S  L  A  N  Y  S  L  C  I  L  E  :  V  I  K  S  H  T  H  H  E  S  S  M  S  E  S  L  L  M  I  E  *  G  N  M  E  V  A  D  C  T  S  F  N  I  M  Y  L  G  P  C  I  L  L  V   </second_frame>
            <third_frame>   V  S  Y  G  Y  Q  Q  G  L  M  Y  S  P  Y  G :   Y  A  T  Y  G  T  D  Y  V  Y  P  Q  :  G  V  Y  N  P  Y  G  G  Q  Q  Y  L  P  I  Y  G  V  P  G  T  V  N  A  T  M  Y  P  Y  G  Q  L  S  Q  A  V  P  G  S  H  S  Y  T  T  L  Q  G  Y  A  V  P  G  H  Q  I  L  Q  F  G  G  P  G  V  N  A  M  T  A  S  S  I  P  T  I  Q  A  P  Y  Q  T  G  R  F  L  L  F  V  S  Y  I  C  M  H  G  S  L  A  Y  H  L  I  I  D  I  N  L  H  S  K  F  I  K  M  S  D  I  *  K  K  V  V  P  H  K  D  R  G  K  G  L  H  I  P  H  P  S  Q  T  P  L  V  V  S  H  W  V  C  C  C  C  M  T  *  L  T  S  R  K  H  A  G  T  S  S  T  S  V  A  S  V  P  S  L  T  *  D  C  K  Y  E  V  D  S  I  I  M  Q  L  F  F  Y  F  *  V  S  E  R  L  L  H  H  S  H  S  L  Y  Y  L  L  I  L  L  N  L  C  K  V  A  V  L  T  K  M  Q  G  E  I  L  S  R :   Y  *  I  A  A  G  L  T  A  A  V  L  L  L  E  R  Q  A  F  N  L  A  L  Q  I  I  H  F  A  F  *  R :   L  *  K  V  I  P  T  M  R  A  Q  C  L  S  R  S  *  *  L  S  E  E  T  W  K  L  R  I  A  L  P  S  T  S  C  I  *  A  L  A  F  C  W  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5785" stop="5742"/>
                    <exon start="5246" stop="5210"/>
                    <exon start="5078" stop="4731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSYGYQQGLMYSPYGYATYGTDYVYPQGVYNPYGGQQYLPIYGVPGTVNATMYPYGQLSQAVPGSHSYTTLQGYAVPGHQILQFGGPGVNAMTASSIPTIQAPYQTGRFLLFVSYICMHGSLAYHLIIDINLHSKFIKMSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6653" e_stop="6024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="6653" e_stop="6024" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6653" stop="6024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTG</gDNA_template>
            <first_frame> M  S  A  F  W  G  F  C  I  I  L  S  L  R  D  C  G  T  W  F  K  M  R  N  K  V  M  *  T  G  L  L  D  Q  R  L  N  I  M  K  C  M  *  S  L  T  V  L  Q  N  T  L  *  S  F  L  L  K  L  Q  E  F  I  P  H  H  K  V  T  Q  *  S  F  P  L  Q  *  F  P  C  L  R  G  C  F  F  C  N  I  T  G  A  V  C  F  D  N  L  L  A  W  P  Y  T  H  L  P  S  W  W  M  A  E  I  F  S  S  T  S  P  K  L  I  V  W  K  *  I  H  C  *  H  T  *  S  I  T  Y  V  T  F  A  Q  S  M  W  R  A  V  S  L  A  S  L  E  H  I  D  N  L  *  N  *  K  L  K  V  P  L  Q  A  I  Y  M  K  N  C  K  A  A  *  E  L  L  *  K  H  L  *  G  S  P  P  F  L  R  I  L  Q  I  S  I  H  G  W  L  C  V  *  L </first_frame>
            <second_frame>  C  L  L  F  G  D  F  V  *  F  Y  L  *  E  I  V  V  H  G  L  K  *  E  I  K  *  C  E  Q  V  S  L  I  R  D  *  T  S  *  S  A  C  N  H  *  L  C  F  R  T  L  S  S  L  F  S  *  S  Y  K  N  S  S  L  I  T  K  *  H  N  D  L  F  P  F  N  N  F  L  V  C  V  A  V  F  F  V  T  *  Q  V  Q  Y  V  L  T  I  F  W  L  G  P  I  P  I  Y  L  L  G  G  W  R  R  S  S  L  R  L  L  Q  N  *  L  C  G  N  E  Y  I  A  S  T  L  N  Q  L  L  M  *  P  L  H  N  Q  C  G  E  L  F  P  W  L  L  L  N  T  L  I  I  F  E  T  R  S  *  K  F  L  Y  R  P  F  I  *  K  I  V  K  L  P  E  N  C  C  K  N  I  Y  K  D  H  L  L  F  *  G  S  C  K  Y  R  F  M  A  G  Y  V  F  D   </second_frame>
            <third_frame>   V  C  F  L  G  I  L  Y  N  F  I  F  K  R  L  W  Y  M  V  *  N  E  K  *  S  D  V  N  R  S  P  *  S  E  T  E  H  H  E  V  H  V  I  T  N  C  A  S  E  H  S  L  V  F  S  P  E  V  T  R  I  H  P  S  S  Q  S  D  T  M  I  F  S  P  S  I  I  S  L  F  A  W  L  F  F  L  *  H  N  R  C  S  M  F  *  Q  S  F  G  L  A  L  Y  P  S  T  F  L  V  D  G  G  D  L  L  F  D  F  S  K  I  D  C  V  E  M  N  T  L  L  A  H  L  I  N  Y  L  C  D  L  C  T  I  N  V  E  S  C  F  L  G  F  S  *  T  H  *  *  S  L  K  L  E  A  E  S  S  F  T  G  H  L  Y  E  K  L  *  S  C  L  R  I  V  V  K  T  S  I  R  I  T  S  F  S  K  D  P  A  N  I  D  S  W  L  V  M  C  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0059M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12727" PGL_stop="9001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12727" e_stop="12590"/>
            <exon e_start="12507" e_stop="12338"/>
            <exon e_start="11735" e_stop="11550"/>
            <exon e_start="11287" e_stop="11125"/>
            <exon e_start="10127" e_stop="9938"/>
            <exon e_start="9512" e_stop="9229"/>
            <exon e_start="9007" e_stop="9001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.397" e_score="0.968"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12727" e_stop="12590" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12507" e_stop="12338" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="11550" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.902">
            <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11287" e_stop="11125" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10127" e_stop="9938" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425"/>
          </intron>
          <exon e_serial="6" e_score="0.968">
            <gDNA_exon_boundary e_start="9512" e_stop="9229" e_length="284"/>
          </exon>
          <intron i_serial="6" don_prob="0.615" acc_prob="0.397">
            <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221"/>
          </intron>
          <exon e_serial="7" e_score="0.714">
            <gDNA_exon_boundary e_start="9007" e_stop="9001" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12727" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT : CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT : AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG : TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG : AGAACAA</gDNA_template>
            <first_frame> C  V  D  E  A  W  R  *  W  E  R  N  F  E  C  V  *  L  E  Q  V  D  T  W  L  H  R  *  *  S  F  S  F  L  K  T  T  *  F  M  A  P  S  E  I  L  :  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  I :   T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N   : V  L  L  M  *  R  R  M  V  V  L  V  Q  R  S  C  R  S  W  V  G  N  I  G  H  W  R  K  L  *  L  M  Q  L  K  V  T  N  K  R  A  F  L  I  E  E  K  T  L  F  F  L  L  S  Y  *  I  I  A  L  Y  V  F  Q  V  F  T  L  A  N  *  S  G  I  R  R  L  H  Y  G  T  F  *  V  L  F  S  C  F  V  L  L  S  V  E  :  R  T  </first_frame>
            <second_frame>  V  W  M  R  H  G  V  D  G  R  E  I  S  S  V  C  N  W  S  R  W  I  R  G  F  I  A  S  E  A  S  P  F  *  R  L  H  S  S  W  H  R  Q  R  S  F :   *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *   : *  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  :  F  Y  *  C  D  G  G  W  W  F  *  F  R  E  A  A  E  V  G  L  A  I  *  G  T  G  G  N  S  S  *  C  S  *  K  L  Q  T  K  G  L  S  *  L  K  K  R  P  F  F  S  C  C  R  T  K  *  L  L  C  M  F  F  K  F  S  H  L  Q  T  S  L  E  *  G  G  Y  T  M  V  P  F  E  F  Y  L  V  V  L  F  C  S  Q  L  R :   E  Q </second_frame>
            <third_frame>   C  G  *  G  M  A  L  M  G  E  K  F  R  V  C  V  T  G  A  G  G  Y  V  A  S  S  L  V  K  L  L  L  S  K  D  Y  I  V  H  G  T  V  R  D  P   : S  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  :  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R :   F  T  D  V  T  E  D  G  G  F  S  S  E  K  L  Q  K  L  G  W  Q  Y  R  A  L  E  E  T  L  V  D  A  V  E  S  Y  K  Q  K  G  F  L  D  *  R  K  D  P  F  F  L  V  V  V  L  N  N  C  S  V  C  F  S  S  F  H  T  C  K  L  V  W  N  K  E  V  T  L  W  Y  L  L  S  S  I  *  L  F  C  F  A  L  S  *   : E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12716" stop="12590"/>
                    <exon start="12507" stop="12338"/>
                    <exon start="11735" stop="11550"/>
                    <exon start="11287" stop="11125"/>
                    <exon start="10127" stop="9938"/>
                    <exon start="9512" stop="9380"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMALMGEKFRVCVTGAGGYVASSLVKLLLSKDYIVHGTVRDPSDDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKRFTDVTEDGGFSSEKLQKLGWQYRALEETLVDAVESYKQKGFLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10112" e_stop="9566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="10112" e_stop="9566" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10112" stop="9566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACC</gDNA_template>
            <first_frame> W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N  G  E  F  L  S  F  S  L  Y  A  S  L  M  *  I  *  C  P  I  S  C  V  W  F  K  S  C  R  G  K  K  Q  L  K  E  I  G  T  C  L  M  G  I  S  F  R  I  S  S  V  F  G  *  E  F  G  L  F  D  Q  V  Y  *  *  I  F  L  *  Q  T  L  P  T  S  N  I  V  W  F  G  P  R  S  T  Q  L  *  N  S  L  P  R  E  I  L  E  E  L  L  D  L  S  E  H  F  Y  A  I  Q  A  *  T  Q  M  R  Y  Q  *  W  T  G  L  S  Y  </first_frame>
            <second_frame>  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  V  N  F  S  P  F  H  F  M  L  L  *  C  E  Y  S  V  L  F  P  V  Y  G  L  R  V  A  G  E  K  S  S  L  R  K  L  G  L  V  L  W  V  F  H  F  V  F  P  V  C  L  V  K  N  L  V  Y  L  I  R  C  I  D  K  Y  S  C  N  K  P  C  P  L  V  I  L  S  G  S  G  L  G  A  H  N  F  K  I  H  C  L  E  R  F  L  K  N  C  *  T  L  V  S  I  S  M  P  Y  K  P  R  L  K  *  D  I  N  S  G  P  G  S  L  T </second_frame>
            <third_frame>   E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R  *  I  S  L  L  F  T  L  C  F  F  N  V  N  I  V  S  Y  F  L  C  M  V  *  E  L  Q  G  K  K  A  A  *  G  N  W  D  L  S  Y  G  Y  F  I  S  Y  F  Q  C  V  W  L  R  I  W  S  I  *  S  G  V  L  I  N  I  L  V  T  N  L  A  H  *  *  Y  C  L  V  R  A  *  E  H  T  T  L  K  F  I  A  *  R  D  S  *  R  T  V  R  P  *  *  A  F  L  C  H  T  S  L  D  S  N  E  I  S  I  V  D  R  A  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9901" stop="9641"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CEYSVLFPVYGLRVAGEKSSLRKLGLVLWVFHFVFPVCLVKNLVYLIRCIDKYSCNKPCPLVILSGSGLGAHNFKIHCLERFLKNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12708" e_stop="12590"/>
            <exon e_start="12507" e_stop="12338"/>
            <exon e_start="12070" e_stop="11669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.977" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.723" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="12708" e_stop="12590" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12507" e_stop="12338" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.723">
            <gDNA_intron_boundary i_start="12337" i_stop="12071" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="12070" e_stop="11669" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="12070" stop="11669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT : CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : ATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACA</gDNA_template>
            <first_frame> V  D  G  R  E  I  S  S  V  C  N  W  S  R  W  I  R  G  F  I  A  S  E  A  S  P  F  *  R  L  H  S  S  W  H  R  Q  R  S  F :   *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : D  S  S  G  I  F  I  N  S  L  E  C  T  C  Y  Y  L  L  K  A  I  R  G  V  F  L  L  N  E  G  R  D  S  E  L  I  L  G  F  Y  Y  D  V  L  F  K  K  I  F  S  I  R  D  T  L  P  Y  L  R  A  *  D  I  E  K  S  S  A  S  R  R  H  C  I  V  T  K  H  S  A  F  L  G  C  F  W  N  N  Y  S  Q  C  A  L  V  L  H  Q  K  K  V  K  F  F  I  C  S  M  S  *  L  Q  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  </first_frame>
            <second_frame>  L  M  G  E  K  F  R  V  C  V  T  G  A  G  G  Y  V  A  S  S  L  V  K  L  L  L  S  K  D  Y  I  V  H  G  T  V  R  D  P   : S  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  I  A  V  E  S  L  *  T  V  *  N  A  H  V  I  T  C  *  K  L  L  E  V  C  F  Y  S  M  K  D  E  I  V  N  L  Y  W  D  F  I  M  M  C  C  S  K  R  S  F  Q  *  E  T  R  F  P  I  *  E  P  K  T  L  R  N  P  V  H  P  G  D  I  V  L  *  P  S  I  L  H  F  *  V  A  F  G  T  T  I  P  N  V  L  *  F  C  T  K  R  K  *  N  S  S  Y  V  Q  C  L  D  C  R  *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T </second_frame>
            <third_frame>   *  W  E  R  N  F  E  C  V  *  L  E  Q  V  D  T  W  L  H  R  *  *  S  F  S  F  L  K  T  T  *  F  M  A  P  S  E  I  L  :  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  Q  W  N  L  Y  K  Q  S  R  M  H  M  L  L  L  V  E  S  Y  *  R  C  V  S  T  Q  *  R  T  R  *  *  T  Y  I  G  I  L  L  *  C  A  V  Q  K  D  L  F  N  K  R  H  A  S  L  F  E  S  L  R  H  *  E  I  Q  C  I  Q  E  T  L  Y  C  D  Q  A  F  C  I  S  R  L  L  L  E  Q  L  F  P  M  C  S  S  S  A  P  K  E  S  K  I  L  H  M  F  N  V  L  T  A  G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12707" stop="12590"/>
                    <exon start="12507" stop="12338"/>
                    <exon start="12070" stop="12050"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGEKFRVCVTGAGGYVASSLVKLLLSKDYIVHGTVRDPSDDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEIAVESL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="15477" PGL_stop="13825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15477" e_stop="15395"/>
            <exon e_start="15217" e_stop="15106"/>
            <exon e_start="14995" e_stop="14910"/>
            <exon e_start="14557" e_stop="14553"/>
            <exon e_start="14379" e_stop="13825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.600"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15477" e_stop="15395" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15217" e_stop="15106" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14995" e_stop="14910" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="14557" e_stop="14553" e_length="5"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14552" i_stop="14380" i_length="173"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="14379" e_stop="13825" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14910"/>
              <exon start="14557" stop="14553"/>
              <exon start="14379" stop="13825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG : GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG : GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG : ATGTG : ATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</gDNA_template>
            <first_frame> K  *  S  R  S  S  K  M  D  *  H  K  F  L  Y  Q  L  I  F  L  L  G  D  L  T  N  H  R :   L  I  W  W  L  I  M  T  S  L  *  D  M  R  V  Q  Q  S  Q  I  M  R  Y  T  C  I  G  L  V  E  Q  D  V  L  D  A  K  :  V  R  Y  S  T  C  C  A  V  T  E  T  T  C  *  C  Q  R  L  R  T  I  S  T  I  K  W  L  R :   C   : D  L  M  E  *  *  R  R  L  *  K  C  S  E  D  S  W  L  A  V  S  R  V  *  M  L  V  I  F  I  D  F  E  *  N  Y  T  G  W  *  *  H  L  Y  R  *  Q  S  S  A  P  G  R  L  F  F  L  I  A  L  M  L  H  L  P  F  L  V  L  *  L  L  K  N  M  P  N  L  P  M  L  N  R  I  N  T  F  K  R  N  M  *  R  K  T  I  I  F  *  T  Q  Q  C  K  *  L  K  N  F  A  I  Q  *  A  K  T  A  A  K  V  T  S  N  S  G  R  A  Q  R  T  N  G  R  N  T  N  H  N  R  *  P  E  S  S  P  T  P  Y  N  L  F  L  F  Y  C  I  S  Y  L  L  L  L  L  T  A  F  M  T  L  L  F  H  F  L  F  I  L  L  S  Y  F  G  V  F  W  </first_frame>
            <second_frame>  N  N  Q  G  V  Q  R  W  I  D  T  N  S  Y  I  N  *  S  S  C  S  G  I  *  P  I  T   : G  *  F  G  G  *  L  *  P  P  C  E  T  *  E  S  N  R  A  R  S  *  G  I  L  A  S  D  W  *  S  R  T  F  W  T  Q  R :   C  D  I  Q  L  A  V  Q  *  P  R  Q  H  A  N  V  K  D  *  E  P  F  Q  P  S  S  G  *   : D  V  :  I  S  W  N  S  E  E  D  F  E  N  A  L  K  I  A  G  L  L  *  A  E  Y  E  C  W  L  Y  S  *  T  S  S  R  T  T  L  A  G  D  D  I  C  I  V  D  R  A  A  L  R  G  G  F  S  S  *  L  L  S  C  F  T  Y  H  F  *  C  Y  N  F  S  K  T  C  L  I  S  P  C  *  I  E  L  T  L  L  K  G  T  C  K  E  K  Q  L  Y  F  K  H  N  S  A  N  D  *  R  T  S  L  S  S  E  Q  K  Q  Q  P  K  *  P  Q  T  P  V  G  L  K  E  P  M  A  E  I  P  I  T  T  G  N  P  N  R  P  Q  P  L  I  I  C  F  S  S  T  V  L  V  I  C  F  F  Y  L  L  P  L  *  L  Y  Y  F  T  S  Y  L  F  Y  *  V  I  L  V  S  S  G </second_frame>
            <third_frame>   I  I  K  E  F  K  D  G  L  T  Q  I  L  I  S  T  D  L  L  A  R  G  F  D  Q  S  Q  :  V  N  L  V  V  N  Y  D  L  P  V  R  H  E  S  P  T  E  P  D  H  E  V  Y  L  H  R  I  G  R  A  G  R  F  G  R  K   : G  A  I  F  N  L  L  C  S  D  R  D  N  M  L  M  S  K  I  E  N  H  F  N  H  Q  V  A  E  :  M  * :   S  H  G  I  V  K  K  T  L  K  M  L  *  R  *  L  A  C  C  K  P  S  M  N  V  G  Y  I  H  R  L  R  V  E  L  H  W  L  V  M  T  F  V  S  L  T  E  Q  R  S  G  E  A  F  L  L  D  C  S  H  A  S  L  T  I  S  S  V  I  T  S  Q  K  H  A  *  S  P  H  A  K  *  N  *  H  F  *  K  E  H  V  K  K  N  N  Y  I  L  N  T  T  V  Q  M  I  E  E  L  R  Y  P  V  S  K  N  S  S  Q  S  D  L  K  L  R  *  G  S  K  N  Q  W  Q  K  Y  Q  S  Q  P  V  T  R  I  V  P  N  P  L  *  F  V  S  L  L  L  Y  *  L  F  A  S  F  T  Y  C  L  Y  D  S  I  I  S  L  P  I  Y  F  I  K  L  F  W  C  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15475" stop="15395"/>
                    <exon start="15217" stop="15106"/>
                    <exon start="14995" stop="14910"/>
                    <exon start="14557" stop="14379"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIKEFKDGLTQILISTDLLARGFDQSQVNLVVNYDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNMLMSKIENHFNHQVAEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19030" PGL_stop="18401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19030" e_stop="18790"/>
            <exon e_start="18669" e_stop="18401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.983"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="19030" e_stop="18790" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="18669" e_stop="18401" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19030" stop="18790"/>
              <exon start="18669" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG : GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</gDNA_template>
            <first_frame> S  N  G  R  R  F  H  Y  L  H  C  H  Q  *  H  R  R  F  Y  D  S  K  P  T  R  I  Q  K  L  G  R  P  S  R  R  N  R  S  S  *  A  V  F  R  F  *  *  G  R  C  C  R  D  K  Y  R  I  S  T  S  R  *  V  Q  K  R  Q  L  H  S  L  *  S  G  R  F  Q  H  R  S   : G  Y  I  W  R  Y  Y  V  Q  I  S  E  E  I  *  G  F  E  L  I  S  *  A  I  E  G  I  I  C  T  N  A  V  *  A  S  *  Q  D  S  G  N  *  F  A  Y  D  S  Y  A  S  V  Q  E  S  Y  C  S  G  S  *  R  F  W  *  N  Y  L  L  C  A  W  D  V  E  S  N  *  S  K  A  C  C  P  S  S  S  L  Y  L </first_frame>
            <second_frame>  P  M  A  D  A  S  I  T  S  T  A  T  S  S  I  A  A  S  T  T  A  N  P  P  E  S  K  S  W  A  D  Q  A  D  E  I  D  Q  A  E  Q  S  S  A  S  N  E  D  A  A  A  E  I  N  I  G  S  L  Q  V  D  E  S  K  R  D  N  S  T  L  S  D  P  E  D  S  S  I  E  A  :  V  T  S  G  D  T  M  Y  K  S  A  K  R  F  E  D  L  N  L  S  P  E  L  L  K  G  L  Y  V  Q  M  Q  F  E  R  P  S  K  I  Q  E  I  S  L  P  M  I  L  T  P  P  Y  K  N  L  I  A  Q  A  H  N  G  S  G  K  T  T  C  F  V  L  G  M  L  S  R  I  D  P  K  L  A  A  P  Q  A  L  C  I   </second_frame>
            <third_frame>   Q  W  P  T  L  P  L  P  P  L  P  P  V  A  S  P  L  L  R  Q  Q  T  H  P  N  P  K  V  G  Q  T  K  P  T  K  S  I  K  L  S  S  L  P  L  L  M  R  T  L  L  P  R  *  I  S  D  L  Y  K  S  M  S  P  K  E  T  T  P  L  S  L  I  R  K  I  P  A  *  K  R :   L  H  L  A  I  L  C  T  N  Q  R  R  D  L  R  I  *  T  Y  L  L  S  Y  *  R  D  Y  M  Y  K  C  S  L  S  V  L  A  R  F  R  K  L  V  C  L  *  F  L  R  L  R  T  R  I  L  L  L  R  L  I  T  V  L  V  K  L  L  A  L  C  L  G  C  *  V  E  L  I  Q  S  L  L  P  L  K  L  S  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19029" stop="18790"/>
                    <exon start="18669" stop="18403"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMADASITSTATSSIAASTTANPPESKSWADQADEIDQAEQSSASNEDAAAEINIGSLQVDESKRDNSTLSDPEDSSIEAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQFERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="21406" PGL_stop="22325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21406" e_stop="21634"/>
            <exon e_start="21716" e_stop="21790"/>
            <exon e_start="21873" e_stop="22325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="21406" e_stop="21634" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21635" i_stop="21715" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21716" e_stop="21790" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21791" i_stop="21872" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="21873" e_stop="22325" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21406" stop="21634"/>
              <exon start="21716" stop="21790"/>
              <exon start="21873" stop="22325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAGCTGCTTCAGTTAATCTAGGGGGAAAACTGATTTTTGTTTAGGAGAAGGAAGAAATTGGAATGGCGAGTGATTGGAGGAAATCGGTGGGTAATGTTAGATCCTTCGTCGGAAACTTAACCGGAGGTTTAAGGGGTGGAAGCAATTTGGCATCTTGGGTTGTCGCCGGTACTTTAGCTTACTTTCTATGGGTCAAGCCATCTCAGGAACTCAAGAGGCAGCAAGAG : GAAAAGGCCGCTTTGGCGGCTGCATCAGATGCTTATCGCTATGTTGAGAAGCGAAAACCCGTTCCTGATCCGCAG : GAAACTGGATTGATATACGGTAACAAGAACAAAGCTAAAAGAGCTGAAGAATAGAGCTTCGCGAGAATTCCATGCCGTTCTGTAAGTTTAATGAATGCTCAGGGAATTGTCTGCTCATTGGCGTATAGGGACCTTATATACTTATACTTCTGAACTCATTTTCTTTATAGGGCCAAATAATTATCTATACCTAGAAAAGGAAATCATGTAAGCTTTAAGTTTTTGTGGATATAATGTAGCATGTTTTTTGTTTTCAAGGTGAGGTTCTTGAATAGCATTTACTGGTTTATCAGCATGATGTTTTATTTCCTTTTATCTTTGCTCTACATGAACATTTTTGTTAATTGTTCAAAGTTTCTATGTATTGGTTCGACTAGCTTCTATTCTTATGTTAATTACTCCATAAGGATTTTGTATTAACAGTCATCAAATTTCAAGAATCTTTCTCTTTTG</gDNA_template>
            <first_frame> M  S  C  F  S  *  S  R  G  K  T  D  F  C  L  G  E  G  R  N  W  N  G  E  *  L  E  E  I  G  G  *  C  *  I  L  R  R  K  L  N  R  R  F  K  G  W  K  Q  F  G  I  L  G  C  R  R  Y  F  S  L  L  S  M  G  Q  A  I  S  G  T  Q  E  A  A  R   : G  K  G  R  F  G  G  C  I  R  C  L  S  L  C  *  E  A  K  T  R  S  *  S  A   : G  N  W  I  D  I  R  *  Q  E  Q  S  *  K  S  *  R  I  E  L  R  E  N  S  M  P  F  C  K  F  N  E  C  S  G  N  C  L  L  I  G  V  *  G  P  Y  I  L  I  L  L  N  S  F  S  L  *  G  Q  I  I  I  Y  T  *  K  R  K  S  C  K  L  *  V  F  V  D  I  M  *  H  V  F  C  F  Q  G  E  V  L  E  *  H  L  L  V  Y  Q  H  D  V  L  F  P  F  I  F  A  L  H  E  H  F  C  *  L  F  K  V  S  M  Y  W  F  D  *  L  L  F  L  C  *  L  L  H  K  D  F  V  L  T  V  I  K  F  Q  E  S  F  S  F  </first_frame>
            <second_frame>  *  A  A  S  V  N  L  G  G  K  L  I  F  V  *  E  K  E  E  I  G  M  A  S  D  W  R  K  S  V  G  N  V  R  S  F  V  G  N  L  T  G  G  L  R  G  G  S  N  L  A  S  W  V  V  A  G  T  L  A  Y  F  L  W  V  K  P  S  Q  E  L  K  R  Q  Q  E  :  E  K  A  A  L  A  A  A  S  D  A  Y  R  Y  V  E  K  R  K  P  V  P  D  P  Q  :  E  T  G  L  I  Y  G  N  K  N  K  A  K  R  A  E  E  *  S  F  A  R  I  P  C  R  S  V  S  L  M  N  A  Q  G  I  V  C  S  L  A  Y  R  D  L  I  Y  L  Y  F  *  T  H  F  L  Y  R  A  K  *  L  S  I  P  R  K  G  N  H  V  S  F  K  F  L  W  I  *  C  S  M  F  F  V  F  K  V  R  F  L  N  S  I  Y  W  F  I  S  M  M  F  Y  F  L  L  S  L  L  Y  M  N  I  F  V  N  C  S  K  F  L  C  I  G  S  T  S  F  Y  S  Y  V  N  Y  S  I  R  I  L  Y  *  Q  S  S  N  F  K  N  L  S  L  L </second_frame>
            <third_frame>   E  L  L  Q  L  I  *  G  E  N  *  F  L  F  R  R  R  K  K  L  E  W  R  V  I  G  G  N  R  W  V  M  L  D  P  S  S  E  T  *  P  E  V  *  G  V  E  A  I  W  H  L  G  L  S  P  V  L  *  L  T  F  Y  G  S  S  H  L  R  N  S  R  G  S  K  R :   K  R  P  L  W  R  L  H  Q  M  L  I  A  M  L  R  S  E  N  P  F  L  I  R  R :   K  L  D  *  Y  T  V  T  R  T  K  L  K  E  L  K  N  R  A  S  R  E  F  H  A  V  L  *  V  *  *  M  L  R  E  L  S  A  H  W  R  I  G  T  L  Y  T  Y  T  S  E  L  I  F  F  I  G  P  N  N  Y  L  Y  L  E  K  E  I  M  *  A  L  S  F  C  G  Y  N  V  A  C  F  L  F  S  R  *  G  S  *  I  A  F  T  G  L  S  A  *  C  F  I  S  F  Y  L  C  S  T  *  T  F  L  L  I  V  Q  S  F  Y  V  L  V  R  L  A  S  I  L  M  L  I  T  P  *  G  F  C  I  N  S  H  Q  I  S  R  I  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21452" stop="21634"/>
                    <exon start="21716" stop="21790"/>
                    <exon start="21873" stop="21926"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKEEIGMASDWRKSVGNVRSFVGNLTGGLRGGSNLASWVVAGTLAYFLWVKPSQELKRQQEEKAALAAASDAYRYVEKRKPVPDPQETGLIYGNKNKAKRAEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="27703" PGL_stop="28235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27703" e_stop="28235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27703" e_stop="28235" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27703" stop="28235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATCTGACAGTGATGCTGGTGCAAGTTCTGGAGGCGGAGCTCCCAATCGCCGTCCTCGAGGCCGTCCGCCTGGATCTAAAAATAAGCCCAAGCCTCCAATCATCGTGACGAGAGATACGCCTAACGCACTCCGATCTCACGTGCTTGAAGTTTCGACCGATGTTGATATCATGGAAAGTATCTCCAATTACGCAAGGCGGAGAGGGAGAGGTGTTTGTATTCTTAGTGGTAGCGGCACAGTTACCAACGTCAACCTTCGTCAGCCTGCTGCAAGTGTAGTCACACTCCACGGACGTTTCGAAATACTTAGCCTCTCAGGTACGGTGCTTCCTCCGCCTGCACCGCCCGCCTCCAGTGGGATCTCTATATTTTTATCAGGTGGACAAGGACAAGTGGTTGGAGGATCCGTTGTAGGGCCTTTGATCGCATCAGGTCCAGTCGTCTTAATGGCTGCCTCTTTTGCTAATGCTGTATTTGAACGACTTCCCTTGGAGGAAGATGATGAGGCTCCTGCTAATGTTCCTACTACAC</gDNA_template>
            <first_frame> *  I  *  Q  *  C  W  C  K  F  W  R  R  S  S  Q  S  P  S  S  R  P  S  A  W  I  *  K  *  A  Q  A  S  N  H  R  D  E  R  Y  A  *  R  T  P  I  S  R  A  *  S  F  D  R  C  *  Y  H  G  K  Y  L  Q  L  R  K  A  E  R  E  R  C  L  Y  S  *  W  *  R  H  S  Y  Q  R  Q  P  S  S  A  C  C  K  C  S  H  T  P  R  T  F  R  N  T  *  P  L  R  Y  G  A  S  S  A  C  T  A  R  L  Q  W  D  L  Y  I  F  I  R  W  T  R  T  S  G  W  R  I  R  C  R  A  F  D  R  I  R  S  S  R  L  N  G  C  L  F  C  *  C  C  I  *  T  T  S  L  G  G  R  *  *  G  S  C  *  C  S  Y  Y   </first_frame>
            <second_frame>  E  S  D  S  D  A  G  A  S  S  G  G  G  A  P  N  R  R  P  R  G  R  P  P  G  S  K  N  K  P  K  P  P  I  I  V  T  R  D  T  P  N  A  L  R  S  H  V  L  E  V  S  T  D  V  D  I  M  E  S  I  S  N  Y  A  R  R  R  G  R  G  V  C  I  L  S  G  S  G  T  V  T  N  V  N  L  R  Q  P  A  A  S  V  V  T  L  H  G  R  F  E  I  L  S  L  S  G  T  V  L  P  P  P  A  P  P  A  S  S  G  I  S  I  F  L  S  G  G  Q  G  Q  V  V  G  G  S  V  V  G  P  L  I  A  S  G  P  V  V  L  M  A  A  S  F  A  N  A  V  F  E  R  L  P  L  E  E  D  D  E  A  P  A  N  V  P  T  T  </second_frame>
            <third_frame>   N  L  T  V  M  L  V  Q  V  L  E  A  E  L  P  I  A  V  L  E  A  V  R  L  D  L  K  I  S  P  S  L  Q  S  S  *  R  E  I  R  L  T  H  S  D  L  T  C  L  K  F  R  P  M  L  I  S  W  K  V  S  P  I  T  Q  G  G  E  G  E  V  F  V  F  L  V  V  A  A  Q  L  P  T  S  T  F  V  S  L  L  Q  V  *  S  H  S  T  D  V  S  K  Y  L  A  S  Q  V  R  C  F  L  R  L  H  R  P  P  P  V  G  S  L  Y  F  Y  Q  V  D  K  D  K  W  L  E  D  P  L  *  G  L  *  S  H  Q  V  Q  S  S  *  W  L  P  L  L  L  M  L  Y  L  N  D  F  P  W  R  K  M  M  R  L  L  L  M  F  L  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27704" stop="28234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESDSDAGASSGGGAPNRRPRGRPPGSKNKPKPPIIVTRDTPNALRSHVLEVSTDVDIMESISNYARRRGRGVCILSGSGTVTNVNLRQPAASVVTLHGRFEILSLSGTVLPPPAPPASSGISIFLSGGQGQVVGGSVVGPLIASGPVVLMAASFANAVFERLPLEEDDEAPANVPTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="28416" PGL_stop="28732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28416" e_stop="28732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="28416" e_stop="28732" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28416" stop="28732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTAAA</gDNA_template>
            <first_frame> P  K  E  I  W  L  L  G  I  I  T  H  S  Q  L  S  C  L  D  G  V  A  M  L  Q  M  K  G  P  H  F  S  *  Y  I  R  *  *  S  *  D  F  Q  I  T  Q  N  V  K  R  *  L  V  Q  K  I  A  S  C  G  *  Q  T  L  L  F  F  F  *  F  H  Q  R  K  K  T  *  K  Q  G  E  F  H  V  C  I  Y  I  Y  I  V  F  V  Q  V  L  Y  N  N  A  H  L  H  C  L   </first_frame>
            <second_frame>  R  R  K  Y  G  F  W  E  *  L  L  I  L  S  *  V  A  W  M  G  W  Q  C  C  K  *  K  A  P  I  L  A  S  I  Y  D  S  D  H  E  I  F  K  L  L  K  M  L  R  D  S  W  C  R  K  *  P  V  V  A  N  K  H  Y  F  F  F  S  N  S  T  N  G  R  K  L  E  S  K  V  S  F  M  Y  V  Y  I  Y  I  *  C  L  Y  K  Y  Y  I  T  M  L  I  F  I  V  *  </second_frame>
            <third_frame>   E  G  N  M  A  F  G  N  N  Y  S  F  S  A  E  L  L  G  W  G  G  N  A  A  N  E  R  P  P  F  *  L  V  Y  T  I  V  I  M  R  F  S  N  Y  S  K  C  *  E  I  A  G  A  E  N  S  Q  L  W  L  T  N  T  T  F  F  F  L  I  P  P  T  E  E  N  L  K  A  R  *  V  S  C  M  Y  I  Y  I  Y  S  V  C  T  S  T  I  *  Q  C  S  S  S  L  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0059M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="39406" PGL_stop="29888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39406" e_stop="39367"/>
            <exon e_start="35363" e_stop="35318"/>
            <exon e_start="34551" e_stop="34462"/>
            <exon e_start="33102" e_stop="32980"/>
            <exon e_start="32875" e_stop="32824"/>
            <exon e_start="32592" e_stop="32520"/>
            <exon e_start="32049" e_stop="31983"/>
            <exon e_start="31901" e_stop="31851"/>
            <exon e_start="30935" e_stop="30843"/>
            <exon e_start="30284" e_stop="29888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.198" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.861" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39406" e_stop="39367" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="39366" i_stop="35364" i_length="4003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35363" e_stop="35318" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35317" i_stop="34552" i_length="766"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34551" e_stop="34462" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34461" i_stop="33103" i_length="1359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33102" e_stop="32980" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32979" i_stop="32876" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32875" e_stop="32824" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="32823" i_stop="32593" i_length="231"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32592" e_stop="32520" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.198" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32519" i_stop="32050" i_length="470"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32049" e_stop="31983" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.861">
            <gDNA_intron_boundary i_start="31982" i_stop="31902" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31901" e_stop="31851" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="31850" i_stop="30936" i_length="915"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30935" e_stop="30843" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30842" i_stop="30285" i_length="558"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30284" e_stop="29888" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39406" stop="39367"/>
              <exon start="35363" stop="35318"/>
              <exon start="34551" stop="34462"/>
              <exon start="33102" stop="32980"/>
              <exon start="32875" stop="32824"/>
              <exon start="32592" stop="32520"/>
              <exon start="32049" stop="31983"/>
              <exon start="31901" stop="31851"/>
              <exon start="30935" stop="30843"/>
              <exon start="30284" stop="29888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAA : GACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAG : GCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAG : GGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAG : GACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTG : GTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCA : GTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACA : AAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAG : GTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAG : GTAGTTAGCCTGCCAGCTAGAATCGATCCACTTCAGACTTCTGCTGTTGTTACCCTCCATGGACAGCTCTTTGTTCGTGTACCATTTGCGTAGTGAAAATATTTGACTCAAGAGGGAGTTTTGAACGTTTGGATGAACTTTATTGACAAAGCATGGATGCTGATAGTTGACCAACATTGATAGTCAGATTGTGAATGCTAGGGCCGTAGATTGTGGATCTGTGTATGATGATTAGTTTGATCAAATTAGTTGTTGACGTGTTCTGTGGGTTAAAATTTTAAAGCAAAAGGAGGCATGTCCTGCTGCGACACATTTTTTTACTCTGGGAATTTAGCTAGAACTTTTTTGTTTCTGAGATTAATATTTATACTCAATTATTTCTAGTTAGCATTTGACT</gDNA_template>
            <first_frame> S  C  G  D  K  S  A  N  R  L  I  P  P   : R  L  A  Q  L  C  P  G  H  S  A  F  F  M  R  R :   L  F  *  N  M  K  G  I  R  C  K  A  A  S  F  N  F  L  L  L  L  F  L  K  Q  V  L  I  M  R :   E  M  V  I  K  L  L  D  Q  A  G  R  E  E  M  L  L  L  V  P  C  K  D  G  M  S  N  V  F  L  V  V  A  R  L  G  S  Q  L  *  R :   T  R  M  P  N  I  R  Q  S  V  R  R  I  S  K  A  L  :  V  L  *  N  T  R  D  Q  M  K  W  N  I  L  R  K  W  H  E  Q  K  H  L  S   : S  W  L  Q  Q  L  L  I  W  D  L  Q  L  I  G  *  K  S  T  C  E  K  Q :   K  I  V  L  R  S  M  L  W  C  L  G  F  *  E  R  R :   C  A  F  N  L  I  L  L  A  V  W  S  *  L  V  S  R  N  N  L  T  T  L  G  V  L  P  P  S  K  R :   *  L  A  C  Q  L  E  S  I  H  F  R  L  L  L  L  L  P  S  M  D  S  S  L  F  V  Y  H  L  R  S  E  N  I  *  L  K  R  E  F  *  T  F  G  *  T  L  L  T  K  H  G  C  *  *  L  T  N  I  D  S  Q  I  V  N  A  R  A  V  D  C  G  S  V  Y  D  D  *  F  D  Q  I  S  C  *  R  V  L  W  V  K  I  L  K  Q  K  E  A  C  P  A  A  T  H  F  F  T  L  G  I  *  L  E  L  F  C  F  *  D  *  Y  L  Y  S  I  I  S  S  *  H  L  T </first_frame>
            <second_frame>  A  V  E  T  S  R  R  I  V  *  S  P  Q  :  D  L  H  N  C  V  L  D  I  P  H  F  L  *  E   : G  S  F  R  I  *  K  A  *  D  A  K  R  Q  A  S  T  S  Y  C  C  S  S  *  S  R  C  *  *  *   : G  K  W  *  S  N  S  W  I  R  Q  G  E  K  R  C  C  C  S  C  H  A  R  M  A  *  A  T  S  S  W  L  W  R  G  W  G  A  N  C  K   : G  Q  E  C  Q  T  Y  A  K  A  *  E  E  F  Q  K  H  W :   F  Y  K  T  Q  E  T  K  *  N  G  T  S  F  E  S  G  T  N  R  N  I  *  A  :  V  G  Y  N  S  C  *  F  G  T  S  S  *  L  G  K  N  Q  R  A  R  N   : K  R  L  F  *  D  L  C  S  G  A  W  A  F  E  R  G   : G  A  R  S  I  *  S  C  W  P  S  G  H  N  W  S  A  G  T  T  *  Q  P  L  G  Y  Y  R  L  Q  K   : G  S  *  P  A  S  *  N  R  S  T  S  D  F  C  C  C  Y  P  P  W  T  A  L  C  S  C  T  I  C  V  V  K  I  F  D  S  R  G  S  F  E  R  L  D  E  L  Y  *  Q  S  M  D  A  D  S  *  P  T  L  I  V  R  L  *  M  L  G  P  *  I  V  D  L  C  M  M  I  S  L  I  K  L  V  V  D  V  F  C  G  L  K  F  *  S  K  R  R  H  V  L  L  R  H  I  F  L  L  W  E  F  S  *  N  F  F  V  S  E  I  N  I  Y  T  Q  L  F  L  V  S  I  *   </second_frame>
            <third_frame>   L  W  R  Q  V  G  E  S  F  N  P  P  K :   T  C  T  T  V  S  W  T  F  R  I  F  Y  E  K  :  A  L  L  E  Y  E  R  H  K  M  Q  S  G  K  L  Q  L  P  I  A  A  L  P  E  A  G  V  D  N  E  :  G  N  G  N  Q  T  P  G  S  G  R  A  R  R  D  A  A  A  R  A  M  Q  G  W  H  E  Q  R  L  L  G  C  G  E  V  G  E  P  I  V  K  :  D  K  N  A  K  H  T  P  K  R  E  K  N  F  K  S  I   : G  S  I  K  H  K  R  P  N  E  M  E  H  P  S  K  V  A  R  T  E  T  S  K  Q :   L  V  T  T  V  V  D  L  G  P  P  A  D  W  V  K  I  N  V  R  E  T  :  K  D  C  F  E  I  Y  A  L  V  P  G  L  L  R  E  E  :  V  R  V  Q  S  D  P  A  G  R  L  V  I  T  G  Q  P  E  Q  L  D  N  P  W  G  I  T  A  F  K  K  :  V  V  S  L  P  A  R  I  D  P  L  Q  T  S  A  V  V  T  L  H  G  Q  L  F  V  R  V  P  F  A  *  *  K  Y  L  T  Q  E  G  V  L  N  V  W  M  N  F  I  D  K  A  W  M  L  I  V  D  Q  H  *  *  S  D  C  E  C  *  G  R  R  L  W  I  C  V  *  *  L  V  *  S  N  *  L  L  T  C  S  V  G  *  N  F  K  A  K  G  G  M  S  C  C  D  T  F  F  Y  S  G  N  L  A  R  T  F  L  F  L  R  L  I  F  I  L  N  Y  F  *  L  A  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39404" stop="39367"/>
                    <exon start="35363" stop="35318"/>
                    <exon start="34551" stop="34462"/>
                    <exon start="33102" stop="32980"/>
                    <exon start="32875" stop="32824"/>
                    <exon start="32592" stop="32520"/>
                    <exon start="32049" stop="31983"/>
                    <exon start="31901" stop="31851"/>
                    <exon start="30935" stop="30843"/>
                    <exon start="30284" stop="30192"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYERHKMQSGKLQLPIAALPEAGVDNEGNGNQTPGSGRARRDAAARAMQGWHEQRLLGCGEVGEPIVKDKNAKHTPKREKNFKSIGSIKHKRPNEMEHPSKVARTETSKQLVTTVVDLGPPADWVKINVRETKDCFEIYALVPGLLREEVRVQSDPAGRLVITGQPEQLDNPWGITAFKKVVSLPARIDPLQTSAVVTLHGQLFVRVPFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="48512" PGL_stop="49966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48512" e_stop="48841"/>
            <exon e_start="49098" e_stop="49262"/>
            <exon e_start="49954" e_stop="49966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48512" e_stop="48841" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48842" i_stop="49097" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="49098" e_stop="49262" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49263" i_stop="49953" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="0.846">
            <gDNA_exon_boundary e_start="49954" e_stop="49966" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48512" stop="48841"/>
              <exon start="49098" stop="49262"/>
              <exon start="49954" stop="49966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326141" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATAATGTCACAAAATAACAACTTGTGCTACTTGGTCACATCACTGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTG : GCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAAACAAGTTGACAT : AAAAAAGAAAAAC</gDNA_template>
            <first_frame> R  *  C  H  K  I  T  T  C  A  T  W  S  H  H  *  M  *  S  I  K  H  L  *  L  V  E  M  I  A  G  M  E  P  Y  H  F  *  H  *  S  W  A  V  T  F  *  R  V  *  P  V  Q  G  F  R  N  P  Y  F  L  A  L  L  L  S  D  T  L  P  C  L  L  L  V  S  L  *  S  K  E  L  F  A  W  A  W  C  N  M  I  H  Y  I  N  L  C  F  Y  F  N  L  H  F  H  Q  Q  *  T  L  :  A  P  *  H  S  Y  L  E  L  V  R  V  S  V  Q  *  L  C  F  G  L  M  H  W  L  Q  Y  R  L  L  C  G  Q  H  S  S  C  G  L  Y  L  N  F  I  F  F  *  Y  Q  T  *  T  S  *  H  :  K  K  E  K  </first_frame>
            <second_frame>  D  N  V  T  K  *  Q  L  V  L  L  G  H  I  T  E  C  N  P  L  S  I  F  D  L  L  K  *  L  Q  G  W  S  H  T  T  S  N  T  D  H  G  R  *  P  F  E  G  F  D  R  F  R  D  S  E  I  P  T  S  W  H  Y  C  C  Q  I  H  C  P  A  S  Y  W  Y  R  C  S  Q  R  S  Y  S  L  G  L  G  A  T  *  S  I  I  S  I  C  A  F  T  S  I  C  T  S  T  S  N  E  H  W :   H  H  N  T  V  I  W  S  W  *  E  *  V  F  S  D  Y  V  L  G  L  C  I  G  F  N  I  A  Y  S  V  D  N  I  L  H  V  A  C  I  L  T  S  F  F  F  N  I  R  H  K  Q  V  D  I :   K  K  K  N </second_frame>
            <third_frame>   I  M  S  Q  N  N  N  L  C  Y  L  V  T  S  L  N  V  I  H  *  A  S  L  T  C  *  N  D  C  R  D  G  A  I  P  L  L  T  L  I  M  G  G  N  L  L  K  G  L  T  G  S  G  I  Q  K  S  L  L  L  G  I  I  V  V  R  Y  I  A  L  P  L  I  G  I  V  V  V  K  G  A  I  R  L  G  L  V  Q  H  D  P  L  Y  Q  F  V  L  L  L  Q  F  A  L  P  P  A  M  N  I   : G  T  I  T  Q  L  F  G  A  G  E  S  E  C  S  V  I  M  F  W  A  Y  A  L  A  S  I  S  L  T  L  W  T  T  F  F  M  W  L  V  S  *  L  H  F  F  L  I  S  D  I  N  K  L  T   : *  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48592" stop="48841"/>
                    <exon start="49098" stop="49222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDCRDGAIPLLTLIMGGNLLKGLTGSGIQKSLLLGIIVVRYIALPLIGIVVVKGAIRLGLVQHDPLYQFVLLLQFALPPAMNIGTITQLFGAGESECSVIMFWAYALASISLTLWTTFFMWLVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="51540" PGL_stop="49583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51540" e_stop="51261"/>
            <exon e_start="51071" e_stop="50930"/>
            <exon e_start="50835" e_stop="50774"/>
            <exon e_start="50679" e_stop="50568"/>
            <exon e_start="50475" e_stop="50382"/>
            <exon e_start="50263" e_stop="50194"/>
            <exon e_start="50109" e_stop="49971"/>
            <exon e_start="49887" e_stop="49583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="51540" e_stop="51261" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51071" e_stop="50930" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50835" e_stop="50774" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50679" e_stop="50568" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="50567" i_stop="50476" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50475" e_stop="50382" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50381" i_stop="50264" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50263" e_stop="50194" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.907">
            <gDNA_intron_boundary i_start="50193" i_stop="50110" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50109" e_stop="49971" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49970" i_stop="49888" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49887" e_stop="49583" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51540" stop="51261"/>
              <exon start="51071" stop="50930"/>
              <exon start="50835" stop="50774"/>
              <exon start="50679" stop="50568"/>
              <exon start="50475" stop="50382"/>
              <exon start="50263" stop="50194"/>
              <exon start="50109" stop="49971"/>
              <exon start="49887" stop="49583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCCAGAAGCGCACAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAG : GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAG : AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAG : GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAG : ATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTG : CTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAG : ATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGT : GAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</gDNA_template>
            <first_frame> K  P  Q  K  R  T  N  T  N  T  A  R  V  K  K  W  R  L  L  K  M  L  V  R  V  Y  R  R  W  R  H  L  R  S  W  R  R  L  G  R  V  P  M  E  R  C  T  E  R  E  I  G  L  L  A  R  L  L  H  *  R  R  Q  G  F  M  R  T  K  K  V  F  L  Q  L  L  S  V  R  S  H  S  S  E  C  S  Q  G  I  P  T  L  S   : G  *  W  M  L  N  K  G  R  T  K  K  E  R  L  F  F  T  W  S  L  S  T  W  I  L  M  S  R  N  L  F  V  L  S  V  Q  K  E  K  L  C  P  L  K  L  *  R :   A  *  C  T  S  S  A  K  G  L  L  S  A  M  A  M  V  Y  C  T   : G  I  *  N  H  T  I  F  *  W  T  V  R  R  M  C  S  N  *  Q  I  L  D  L  A  E  L  I  L  C  P  L  R  S  T  H  M  R :   Y  *  P  C  G  I  E  P  L  R  F  Y  L  E  L  L  I  I  P  Q  Q  L  T  C  G  L  L  V  V  Y  L  :  L  N  *  *  Q  T  K  P  S  S  Q  E  T  L  S  C  N  N  C  F  T  F  S   : D  C  *  V  L  L  M  K  N  S  G  L  G  *  A  S  *  L  T  G  M  N  T  P  S  G  N  H  S  H  S  Q  P  L  S  L  V  L  M  K  M  G  F  T  F  S  V :   R  C  C  I  M  S  R  L  G  G  F  Q  L  R  K  L  W  N  I  P  I  L  M  I  S  T  K  L  L  S  E  K  S  Q  Q  F  D  Q  Q  N  S  S  N  L  Y  R  K  L  L  L  L  F  S  S  I  F  *  *  *  Y  Q  L  V  *  *  C  V  S  F  L  N  L  F  F  *  Y  Q  L  D  Q  C  K  H  N  Y  V  Q  *  Y  I  L  L  S  H  Y  L  G  C  F  A  V  </first_frame>
            <second_frame>  N  P  R  S  A  Q  T  Q  T  Q  R  E  *  R  N  G  G  C  *  K  C  W  *  E  C  I  G  D  G  G  I  *  E  A  G  E  G  W  G  G  Y  L  W  K  G  V  Q  S  E  R  *  D  Y  W  Q  D  C  C  T  E  E  D  K  A  S  *  G  R  R  R  C  S  S  N  Y  S  P  *  D  L  T  P  Q  N  A  L  K  G  S  P  H  C  Q  :  A  D  G  C  *  T  R  A  E  Q  R  R  K  D  C  S  L  L  G  L  *  V  H  G  Y  *  C  Q  E  I  Y  S  Y  F  P  C  K  R  R  N  Y  A  P  *  N  C  K   : E  L  D  V  P  A  L  Q  R  G  C  F  L  P  W  P  W  C  I  A  Q  :  G  S  E  T  T  Q  S  S  D  G  P  *  D  E  C  A  Q  I  S  R  F  W  T  W  Q  S  L  Y  S  A  H  *  E  V  H  T  *   : D  I  N  P  V  V  *  S  P  *  G  S  T  W  S  Y  S  L  F  H  S  S  *  H  V  V  C  W  L  Y  I  C :   *  T  S  D  K  P  S  P  L  P  R  R  L  *  A  A  T  T  A  S  H  F  Q  :  I  A  R  Y  S  *  *  R  T  L  A  W  G  E  Q  V  S  *  L  A  *  I  P  P  V  E  T  T  A  T  L  N  R  C  P  W  S  *  *  R  W  D  S  P  S  Q   : *  D  V  A  L  *  A  V  *  E  D  F  S  *  E  S  Y  G  T  S  L  F  *  *  S  R  Q  N  S  S  L  K  K  V  S  N  L  I  N  K  T  R  L  T  S  I  A  S  F  Y  C  F  S  Q  A  S  F  N  S  S  I  N  *  Y  D  D  V  F  H  F  *  T  F  S  F  N  I  N  W  I  N  V  S  T  T  M  C  N  D  I  F  C  Y  H  I  T  W  G  V  L  L  * </second_frame>
            <third_frame>   T  P  E  A  H  K  H  K  H  S  E  S  E  E  M  E  A  A  K  N  A  G  K  S  V  S  A  M  E  A  F  E  K  L  E  K  V  G  E  G  T  Y  G  K  V  Y  R  A  R  D  R  I  T  G  K  I  V  A  L  K  K  T  R  L  H  E  D  E  E  G  V  P  P  T  T  L  R  E  I  S  L  L  R  M  L  S  R  D  P  H  I  V  R :   L  M  D  V  K  Q  G  Q  N  K  E  G  K  T  V  L  Y  L  V  F  E  Y  M  D  T  D  V  K  K  F  I  R  T  F  R  A  K  G  E  T  M  P  L  K  I  V  K  :  S  L  M  Y  Q  L  C  K  G  V  A  F  C  H  G  H  G  V  L  H  R :   D  L  K  P  H  N  L  L  M  D  R  K  T  N  V  L  K  L  A  D  F  G  L  G  R  A  Y  T  L  P  I  K  K  Y  T  H  E  :  I  L  T  L  W  Y  R  A  P  E  V  L  L  G  A  T  H  Y  S  T  A  V  D  M  W  S  V  G  C  I  F   : A  E  L  V  T  N  Q  A  L  F  P  G  D  S  E  L  Q  Q  L  L  H  I  F  R :   L  L  G  T  P  N  E  E  L  W  P  G  V  S  K  L  V  N  W  H  E  Y  P  Q  W  K  P  Q  P  L  S  T  V  V  P  G  L  D  E  D  G  I  H  L  L  S  :  E  M  L  H  Y  E  P  S  R  R  I  S  A  K  K  A  M  E  H  P  Y  F  D  D  L  D  K  T  P  L  *  K  K  S  A  I  *  S  T  K  L  V  *  P  L  S  Q  A  F  I  A  F  L  K  H  L  L  I  V  V  S  I  S  M  M  M  C  F  I  S  K  P  F  L  L  I  S  T  G  S  M  *  A  Q  L  C  A  M  I  Y  F  A  I  T  L  L  G  V  F  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51538" stop="51261"/>
                    <exon start="51071" stop="50930"/>
                    <exon start="50835" stop="50774"/>
                    <exon start="50679" stop="50568"/>
                    <exon start="50475" stop="50382"/>
                    <exon start="50263" stop="50194"/>
                    <exon start="50109" stop="49971"/>
                    <exon start="49887" stop="49795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPEAHKHKHSESEEMEAAKNAGKSVSAMEAFEKLEKVGEGTYGKVYRARDRITGKIVALKKTRLHEDEEGVPPTTLREISLLRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDVKKFIRTFRAKGETMPLKIVKSLMYQLCKGVAFCHGHGVLHRDLKPHNLLMDRKTNVLKLADFGLGRAYTLPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQALFPGDSELQQLLHIFRLLGTPNEELWPGVSKLVNWHEYPQWKPQPLSTVVPGLDEDGIHLLSEMLHYEPSRRISAKKAMEHPYFDDLDKTPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="70649" PGL_stop="65362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70649" e_stop="70505"/>
            <exon e_start="69956" e_stop="69784"/>
            <exon e_start="69447" e_stop="69335"/>
            <exon e_start="69050" e_stop="68976"/>
            <exon e_start="68890" e_stop="68777"/>
            <exon e_start="68680" e_stop="68613"/>
            <exon e_start="68457" e_stop="68374"/>
            <exon e_start="67919" e_stop="67866"/>
            <exon e_start="67654" e_stop="67574"/>
            <exon e_start="67468" e_stop="67375"/>
            <exon e_start="67293" e_stop="67220"/>
            <exon e_start="66987" e_stop="66877"/>
            <exon e_start="66794" e_stop="66750"/>
            <exon e_start="66664" e_stop="66608"/>
            <exon e_start="66099" e_stop="65995"/>
            <exon e_start="65918" e_stop="65802"/>
            <exon e_start="65695" e_stop="65592"/>
            <exon e_start="65383" e_stop="65362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.350" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.783" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70649" e_stop="70505" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69956" e_stop="69784" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69447" e_stop="69335" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69050" e_stop="68976" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68890" e_stop="68777" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.850" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68613" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68457" e_stop="68374" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67919" e_stop="67866" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.894">
            <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67654" e_stop="67574" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.589" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67468" e_stop="67375" e_length="94"/>
          </exon>
          <intron i_serial="10" don_prob="0.938" acc_prob="0.350">
            <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67293" e_stop="67220" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.971">
            <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="66987" e_stop="66877" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.930" acc_prob="0.869">
            <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="66794" e_stop="66750" e_length="45"/>
          </exon>
          <intron i_serial="13" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66664" e_stop="66608" e_length="57"/>
          </exon>
          <intron i_serial="14" don_prob="0.975" acc_prob="0.946">
            <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="66099" e_stop="65995" e_length="105"/>
          </exon>
          <intron i_serial="15" don_prob="0.964" acc_prob="0.765">
            <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="65918" e_stop="65802" e_length="117"/>
          </exon>
          <intron i_serial="16" don_prob="0.980" acc_prob="0.986">
            <gDNA_intron_boundary i_start="65801" i_stop="65696" i_length="106"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="65695" e_stop="65592" e_length="104"/>
          </exon>
          <intron i_serial="17" don_prob="0.986" acc_prob="0.783">
            <gDNA_intron_boundary i_start="65591" i_stop="65384" i_length="208"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="65383" e_stop="65362" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70649" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67375"/>
              <exon start="67293" stop="67220"/>
              <exon start="66987" stop="66877"/>
              <exon start="66794" stop="66750"/>
              <exon start="66664" stop="66608"/>
              <exon start="66099" stop="65995"/>
              <exon start="65918" stop="65802"/>
              <exon start="65695" stop="65592"/>
              <exon start="65383" stop="65362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAGTACTATTATATTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG : GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG : GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG : GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG : GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG : GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA : GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG : GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG : TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG : GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG : ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG : GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG : CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG : ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG : AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAT : GTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCT : GCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGA : ACTGTTGAGTCAAAATGCAACA</gDNA_template>
            <first_frame> E  S  T  I  I  L  Y  *  N  T  Q  K  S  E  V  G  I  N  N  G  C  R  L  R  H  S  S  R  T  L  *  F  A  E  T  S  I  S  L  P  P  *  T  S  T  L  S  S   : G  Y  Y  C  P  G  R  T  P  *  C  N  H  C  S  R  S  L  W  *  T  H  N  *  T  L  L  P  T  H  L  W  S  T  I  S  P  F  S  *  G  N  C  Q  G  P  *  C  S  D  N  Y  *  A  S  C  N  *  :  G  W  G  A  I  L  W  *  T  I  S  W  R  T  Q  R  D  M  G  S  S  *  C  S  *  G  S  Q  P  Q  *  Y  L  A  W  V  F  R :   W  F  *  R  F  I  C  T  K  N  S  R  D  H  R  *  C  S  C  Y  L  *  E  S  R :   W  I  *  H  A  G  A  D  K  R  S  D  *  N  D  *  A  S  K  C  C  N  G  C  M  Q  S  F  E  I  G  W  S  C  H  H  W  R :   S  D  I  K  H  R  C  C  S  S  G  R  K  I  C  R  N  K  M  P  Y  K   : S  G  W  C  S  C  Y  L  K  W  G  S  Q  E  S  V  C  *  S  E  R  W  F  *  H  N  L  Q   : G  *  L  P  T  N  *  Q  C  M  H  *  C  T  L  S  *  E   : V  L  L  F  H  *  T  H  G  A  K  G  I  T  C  C  I  R  V  H  S  A  V  T  S  *  Y   : G  D  S  W  R  G  G  S  C  I  K  A  Y  Y  F  *  H  H  T  T  N  L  *  C  S  S  G  *  G  *  T  * :   *  K  S  W  C  H  P  V  A  *  R  A  Y  *  K  Y  S  *  N  I  C  S  I  A   : G  N  S  W  F  T  Q  A  R  C  F  C  *  *  H  F  L  S  T  I  T  M  G  F  C  T  F  R  I  F  A  A  F  Y  Q  K  A   : A  S  P  T  P  R  I  R  *  L  C  S  A  I  T   : D  *  D  R  E  T  Y  S  S  S  R  G  N  R  N  E  Q  A  I   : E  R  R  N  L  Q  R  K  E  I  *  C  Y  L  P  F  L  W  L  S  S  T  G  I  I  A  I  K  V  *  L  *  L  C  L   : C  A  W  S  C  L  L  P  Y  F  S  C  W  S  *  W  L  H  G  Y  Y  Y  Q  P  E  K  S  C  Q  Q  V  A  L  W  C  C  P  Y  I   : C  N  D  D  C  *  A  L  R  S  W  S  W  *  S  I  N  W  G  T  C  F  A  S  C  Y  C  G  F  E  G  Q  I  I  *  :  T  V  E  S  K  C  N  </first_frame>
            <second_frame>  R  V  L  L  Y  Y  I  E  T  H  K  K  V  R  *  A  *  T  M  D  A  D  Y  G  I  A  R  E  L  S  D  L  Q  K  L  R  S  H  Y  H  P  E  L  P  P  C  L  Q  :  G  T  T  V  R  V  E  L  R  D  A  T  T  A  A  D  P  S  G  E  H  T  I  K  R  F  F  P  H  T  Y  G  Q  P  L  A  H  F  L  R  A  T  A  K  V  P  D  A  Q  I  I  T  E  H  P  A  I  R :   V  G  V  L  F  C  G  R  Q  S  P  G  G  H  N  V  I  W  G  L  H  D  A  L  K  V  H  N  P  N  N  I  L  L  G  F  L   : G  G  S  E  G  L  F  A  Q  K  T  L  E  I  T  D  D  V  L  A  T  Y  K  N  Q   : G  G  Y  D  M  L  G  R  T  K  D  Q  I  R  T  T  E  Q  V  N  A  A  M  A  A  C  K  A  L  K  L  D  G  L  V  I  I  G   : G  V  T  S  N  T  D  A  A  H  L  A  E  K  F  A  E  T  K  C  P  T  K  :  V  V  G  V  P  V  T  L  N  G  D  L  K  N  Q  F  V  E  A  N  V  G  F  D  T  I  C  K  :  V  N  S  Q  L  I  S  N  V  C  T  D  A  L  S  A  E  K  :  Y  Y  Y  F  I  R  L  M  G  R  K  A  S  H  V  A  L  E  C  T  L  Q  S  H  P  N  M  :  V  I  L  G  E  E  V  A  A  S  K  L  T  I  F  D  I  T  Q  Q  I  C  D  A  V  Q  A  R  A  E  H   : D  K  N  H  G  V  I  L  L  P  E  G  L  I  E  S  I  P  E  I  Y  A  L  L  Q  :  E  I  H  G  L  L  R  Q  G  V  S  A  D  N  I  S  S  Q  L  S  P  W  A  S  A  L  F  E  F  L  P  H  F  I  R  K  Q  :  L  L  L  H  P  E  S  D  D  S  A  Q  L  S  Q  :  I  E  T  E  K  L  I  A  H  L  V  E  T  E  M  N  K  R  L  :  K  E  G  T  Y  K  G  K  K  F  N  A  I  C  H  F  F  G  Y  Q  A  R  G  S  L  P  S  K  F  D  C  D  Y  A  Y  :  V  L  G  H  V  C  Y  H  I  L  A  A  G  L  N  G  Y  M  A  T  I  T  N  L  K  N  P  A  N  K  W  H  C  G  A  A  P  I  S  :  A  M  M  T  V  K  R  Y  G  R  G  P  G  K  A  S  I  G  V  P  A  L  H  P  A  T  V  D  L  R  G  K  S  Y  E :   L  L  S  Q  N  A  T </second_frame>
            <third_frame>   E  Y  Y  Y  I  I  L  K  H  T  K  K  *  G  R  H  K  Q  W  M  Q  I  T  A  *  L  E  N  S  L  I  C  R  N  F  D  L  T  T  T  L  N  F  H  L  V  F  R :   V  L  L  S  G  *  N  S  V  M  Q  P  L  Q  Q  I  P  L  V  N  T  Q  L  N  A  S  S  H  T  L  M  V  N  H  *  P  I  F  L  G  Q  L  P  R  S  L  M  L  R  *  L  L  S  I  L  Q  L   : G  L  G  C  Y  F  V  V  D  N  L  L  E  D  T  T  *  Y  G  V  F  M  M  L  L  R  F  T  T  P  I  I  S  C  L  G  F  *  :  V  V  L  K  V  Y  L  H  K  K  L  *  R  S  P  M  M  F  L  L  P  I  R  I  K  :  V  D  M  T  C  W  G  G  Q  K  I  R  L  E  R  L  S  K  *  M  L  Q  W  L  H  A  K  L  *  N  W  M  V  L  S  S  L  E  :  E  *  H  Q  T  P  M  L  L  I  W  Q  K  N  L  Q  K  Q  N  A  L  Q  K :   W  L  V  F  L  L  P  *  M  G  I  S  R  I  S  L  L  K  R  T  L  V  L  T  Q  S  A  R :   L  T  P  N  *  L  A  M  Y  A  L  M  H  S  Q  L  R  S :   I  T  I  S  L  D  S  W  G  E  R  H  H  M  L  H  *  S  A  L  C  S  H  I  L  I  W :   *  F  L  E  R  R  *  L  H  Q  S  L  L  F  L  T  S  H  N  K  F  V  M  Q  F  R  L  G  L  N  M  :  I  K  I  M  V  S  S  C  C  L  K  G  L  L  K  V  F  L  K  Y  M  L  Y  C  R :   K  F  M  V  Y  S  G  K  V  F  L  L  I  T  F  P  L  N  Y  H  H  G  L  L  H  F  S  N  F  C  R  I  L  S  E  S  S :   F  S  Y  T  Q  N  Q  M  T  L  L  S  Y  H  R :   L  R  P  R  N  L  *  L  I  S  W  K  Q  K  *  T  S  D  * :   K  K  E  L  T  K  E  R  N  L  M  L  F  A  I  S  L  V  I  K  H  G  D  H  C  H  Q  S  L  I  V  T  M  P  M :   C  L  V  M  F  A  T  I  F  *  L  L  V  L  M  V  T  W  L  L  L  P  T  *  K  I  L  P  T  S  G  I  V  V  L  P  L  Y  L :   Q  *  *  L  L  S  A  T  V  V  V  L  V  K  H  Q  L  G  Y  L  L  C  I  L  L  L  W  I  *  G  A  N  H  M   : N  C  *  V  K  M  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70597" stop="70505"/>
                    <exon start="69956" stop="69784"/>
                    <exon start="69447" stop="69335"/>
                    <exon start="69050" stop="68976"/>
                    <exon start="68890" stop="68777"/>
                    <exon start="68680" stop="68613"/>
                    <exon start="68457" stop="68374"/>
                    <exon start="67919" stop="67866"/>
                    <exon start="67654" stop="67574"/>
                    <exon start="67468" stop="67375"/>
                    <exon start="67293" stop="67220"/>
                    <exon start="66987" stop="66877"/>
                    <exon start="66794" stop="66750"/>
                    <exon start="66664" stop="66608"/>
                    <exon start="66099" stop="65995"/>
                    <exon start="65918" stop="65802"/>
                    <exon start="65695" stop="65592"/>
                    <exon start="65383" stop="65362"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1584</number_coding_nucleotides>
                  <number_encoded_amino_acids>528</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDADYGIARELSDLQKLRSHYHPELPPCLQGTTVRVELRDATTAADPSGEHTIKRFFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGVLFCGRQSPGGHNVIWGLHDALKVHNPNNILLGFLGGSEGLFAQKTLEITDDVLATYKNQGGYDMLGRTKDQIRTTEQVNAAMAACKALKLDGLVIIGGVTSNTDAAHLAEKFAETKCPTKVVGVPVTLNGDLKNQFVEANVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTIFDITQQICDAVQARAEHDKNHGVILLPEGLIESIPEIYALLQEIHGLLRQGVSADNISSQLSPWASALFEFLPHFIRKQLLLHPESDDSAQLSQIETEKLIAHLVETEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATITNLKNPANKWHCGAAPISAMMTVKRYGRGPGKASIGVPALHPATVDLRGKSYELLSQNAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73771" PGL_stop="71442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73771" e_stop="73235"/>
            <exon e_start="72309" e_stop="72086"/>
            <exon e_start="71870" e_stop="71452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73771" e_stop="73235" e_length="537"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72309" e_stop="72086" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71870" e_stop="71452" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73771" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTAAAAACTTGGAATTTCGTTGAAAGTGTTTGGAGCCTTAACCTCTAAGACACCTAACGTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG : GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG : AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</gDNA_template>
            <first_frame> *  L  K  T  W  N  F  V  E  S  V  W  S  L  N  L  *  D  T  *  R  D  Y  *  I  G  D  I  Q  R  S  G  P  K  I  V  S  R  T  L  V  S  S  P  H  N  L  R  R  T  G  D  D  R  *  H  R  *  Y  H  Q  L  G  R  C  R  S  H  L  P  Q  R  S  R  Q  S  R  R  *  S  I  H  S  S  *  F  L  P  T  V  I  P  A  D  R  A  A  S  Y  E  R  *  R  F  R  S  C  L  *  S  S  V  C  C  R  I  S  F  *  L  P  R  R  F  S  S  S  L  R  S  F  S  L  S  C  *  T  S  H  W  I  L  R  S  Q  G  F  K  C  R  S  G  Q  T  Q  G  F  P  V  A  F  *  R  R  R  R  T  K  Q  P  *  P  R  R  *  E  A  Q  E  :  A  I  E  E  *  R  C  S  C  E  V  T  R  E  E  E  V  V  R  *  G  S  *  V  E  E  *  I  L  *  I  R  M  Q  K  A  G  V  C  S  P  V  L  S  C  *  K  S  S  F  T  L  F  F  A  *  *  Q  C  *  W  C  F  Y  D  Q  A  G  V  C  R  A  L  F  G :   I  P  A  V  G  F  P  A  L  V  P  G  H  H  M  P  A  H  S  T  Q  P  N  L  V  S  S  R  R  K  S  G  K  Q  K  P  R  A  S  G  S  N  K  G  G  K  K  D  *  S  D  F  V  V  P  V  L  H  D  E  Q  K  M  Q  S  F  K  I  E  D  E  A  Q  P  P  S  L  G  S  C  D  V  T  R  C  D  Q  I  F  S  H  R  W  I  M  V  P  F  E  F  F  S  F  L  S  E  I  L  L  Y  V  S  C  F  D  I  *  R  M  K  F  T  V  I  S  *  *  L  M  S  Y  I  I  S  M  Q  L  F  N  </first_frame>
            <second_frame>  N  *  K  L  G  I  S  L  K  V  F  G  A  L  T  S  K  T  P  N  V  I  I  K  L  G  T  S  R  D  R  V  P  K  *  *  V  G  P  *  F  L  H  P  T  I  S  V  E  L  A  M  I  D  N  I  D  D  I  I  N  W  D  D  V  D  H  I  F  H  N  V  L  D  N  P  D  D  D  Q  F  T  L  H  D  S  S  P  Q  S  F  Q  Q  I  E  Q  L  L  M  N  D  D  D  F  G  L  V  S  D  P  Q  F  A  A  E  S  L  S  D  F  L  V  D  S  P  L  H  S  D  H  S  H  S  P  A  E  Q  A  I  G  F  S  D  P  K  V  S  S  A  D  Q  D  K  H  K  V  S  Q  S  P  S  D  G  D  D  E  L  N  N  H  D  P  V  D  K  K  R  K  R :   Q  L  R  N  R  D  A  A  V  R  S  R  E  R  K  K  L  Y  V  R  D  L  E  L  K  S  R  Y  F  E  S  E  C  K  R  L  G  F  V  L  Q  C  C  L  A  E  N  Q  A  L  R  F  S  L  H  N  S  S  A  N  G  V  S  M  T  K  Q  E  S  A  V  L  F  L   : E  S  L  L  L  G  S  L  L  W  F  L  G  I  T  C  L  L  I  L  P  S  Q  T  W  S  V  P  E  E  S  Q  G  S  R  N  H  G  L  L  V  P  I  K  E  G  K  K  T  S  R  I  L  L  F  L  S  F  M  M  S  K  R  C  K  A  S  R  S  R  M  K  L  N  P  H  P  L  G  V  V  M  *  L  V  V  I  K  S  F  P  I  G  G  S  W  F  L  L  S  S  L  V  F  Y  Q  R  F  S  C  M  C  L  A  L  T  S  E  G  *  S  S  L  L  L  V  N  D  L  *  A  I  *  Y  L  C  N  F  L  I </second_frame>
            <third_frame>   I  K  N  L  E  F  R  *  K  C  L  E  P  *  P  L  R  H  L  T  *  L  L  N  W  G  H  P  E  I  G  S  Q  N  S  E  S  D  P  S  F  F  T  P  Q  S  P  S  N  W  R  *  S  I  T  S  M  I  S  S  T  G  T  M  *  I  T  S  S  T  T  F  *  T  I  P  T  M  I  N  S  L  F  M  I  P  P  H  S  H  S  S  R  S  S  S  F  L  *  T  M  T  I  S  V  L  S  L  I  L  S  L  L  P  N  L  F  L  T  S  S  S  I  L  L  F  T  P  I  I  L  T  L  L  L  N  K  P  L  D  S  P  I  P  R  F  Q  V  P  I  R  T  N  T  R  F  P  S  R  L  L  T  A  T  T  N  *  T  T  M  T  P  S  I  R  S  A  R   : G  N  *  G  I  E  M  Q  L  *  G  H  E  R  G  R  S  C  T  L  G  I  L  S  *  R  V  D  T  L  N  Q  N  A  K  G  W  G  L  F  S  S  A  V  L  L  K  I  K  L  Y  A  F  L  C  I  I  A  V  L  M  V  F  L  *  P  S  R  S  L  P  C  S  F  W  :  N  P  C  C  W  V  P  C  F  G  S  W  A  S  H  A  C  S  F  Y  P  A  K  P  G  Q  F  Q  K  K  V  R  E  A  E  T  T  G  F  W  F  Q  *  R  R  E  K  R  L  V  G  F  C  C  S  C  P  S  *  *  A  K  D  A  K  L  Q  D  R  G  *  S  S  T  P  I  P  W  E  L  *  C  D  S  L  *  S  N  L  F  P  *  V  D  H  G  S  F  *  V  L  *  F  F  I  R  D  S  L  V  C  V  L  L  *  H  L  K  D  E  V  H  C  Y  *  L  M  T  Y  E  L  Y  N  I  Y  A  T  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73650" stop="73235"/>
                    <exon start="72309" stop="72086"/>
                    <exon start="71870" stop="71623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHPTISVELAMIDNIDDIINWDDVDHIFHNVLDNPDDDQFTLHDSSPQSFQQIEQLLMNDDDFGLVSDPQFAAESLSDFLVDSPLHSDHSHSPAEQAIGFSDPKVSSADQDKHKVSQSPSDGDDELNNHDPVDKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGFVLQCCLAENQALRFSLHNSSANGVSMTKQESAVLFLESLLLGSLLWFLGITCLLILPSQTWSVPEESQGSRNHGLLVPIKEGKKTSRILLFLSFMMSKRCKASRSRMKLNPHPLGVVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73306" e_stop="73235"/>
            <exon e_start="72309" e_stop="72107"/>
            <exon e_start="71870" e_stop="71442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.985"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73306" e_stop="73235" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="72309" e_stop="72107" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72106" i_stop="71871" i_length="236"/>
          </intron>
          <exon e_serial="3" e_score="0.932">
            <gDNA_exon_boundary e_start="71870" e_stop="71442" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73306" stop="73235"/>
              <exon start="72309" stop="72107"/>
              <exon start="71870" stop="71442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333669" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG : GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGG : AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCG</gDNA_template>
            <first_frame> G  F  P  V  A  F  *  R  R  R  R  T  K  Q  P  *  P  R  R  *  E  A  Q  E  :  A  I  E  E  *  R  C  S  C  E  V  T  R  E  E  E  V  V  R  *  G  S  *  V  E  E  *  I  L  *  I  R  M  Q  K  A  G  V  C  S  P  V  L  S  C  *  K  S  S  F  T  L  F  F  A  *  *  Q  C  *  W  C  F  Y  D  Q  A  G :   I  P  A  V  G  F  P  A  L  V  P  G  H  H  M  P  A  H  S  T  Q  P  N  L  V  S  S  R  R  K  S  G  K  Q  K  P  R  A  S  G  S  N  K  G  G  K  K  D  *  S  D  F  V  V  P  V  L  H  D  E  Q  K  M  Q  S  F  K  I  E  D  E  A  Q  P  P  S  L  G  S  C  D  V  T  R  C  D  Q  I  F  S  H  R  W  I  M  V  P  F  E  F  F  S  F  L  S  E  I  L  L  Y  V  S  C  F  D  I  *  R  M  K  F  T  V  I  S  *  *  L  M  S  Y  I  I  S  M  Q  L  F  N  S  S  N   </first_frame>
            <second_frame>  V  S  Q  S  P  S  D  G  D  D  E  L  N  N  H  D  P  V  D  K  K  R  K  R :   Q  L  R  N  R  D  A  A  V  R  S  R  E  R  K  K  L  Y  V  R  D  L  E  L  K  S  R  Y  F  E  S  E  C  K  R  L  G  F  V  L  Q  C  C  L  A  E  N  Q  A  L  R  F  S  L  H  N  S  S  A  N  G  V  S  M  T  K  Q   : E  S  L  L  L  G  S  L  L  W  F  L  G  I  T  C  L  L  I  L  P  S  Q  T  W  S  V  P  E  E  S  Q  G  S  R  N  H  G  L  L  V  P  I  K  E  G  K  K  T  S  R  I  L  L  F  L  S  F  M  M  S  K  R  C  K  A  S  R  S  R  M  K  L  N  P  H  P  L  G  V  V  M  *  L  V  V  I  K  S  F  P  I  G  G  S  W  F  L  L  S  S  L  V  F  Y  Q  R  F  S  C  M  C  L  A  L  T  S  E  G  *  S  S  L  L  L  V  N  D  L  *  A  I  *  Y  L  C  N  F  L  I  V  P  T  </second_frame>
            <third_frame>   F  P  S  R  L  L  T  A  T  T  N  *  T  T  M  T  P  S  I  R  S  A  R   : G  N  *  G  I  E  M  Q  L  *  G  H  E  R  G  R  S  C  T  L  G  I  L  S  *  R  V  D  T  L  N  Q  N  A  K  G  W  G  L  F  S  S  A  V  L  L  K  I  K  L  Y  A  F  L  C  I  I  A  V  L  M  V  F  L  *  P  S  R  :  N  P  C  C  W  V  P  C  F  G  S  W  A  S  H  A  C  S  F  Y  P  A  K  P  G  Q  F  Q  K  K  V  R  E  A  E  T  T  G  F  W  F  Q  *  R  R  E  K  R  L  V  G  F  C  C  S  C  P  S  *  *  A  K  D  A  K  L  Q  D  R  G  *  S  S  T  P  I  P  W  E  L  *  C  D  S  L  *  S  N  L  F  P  *  V  D  H  G  S  F  *  V  L  *  F  F  I  R  D  S  L  V  C  V  L  L  *  H  L  K  D  E  V  H  C  Y  *  L  M  T  Y  E  L  Y  N  I  Y  A  T  F  *  *  F  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73305" stop="73235"/>
                    <exon start="72309" stop="72107"/>
                    <exon start="71870" stop="71623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSQSPSDGDDELNNHDPVDKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGFVLQCCLAENQALRFSLHNSSANGVSMTKQESLLLGSLLWFLGITCLLILPSQTWSVPEESQGSRNHGLLVPIKEGKKTSRILLFLSFMMSKRCKASRSRMKLNPHPLGVVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="79223" PGL_stop="74712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79223" e_stop="78890"/>
            <exon e_start="78714" e_stop="78655"/>
            <exon e_start="78531" e_stop="78387"/>
            <exon e_start="78292" e_stop="78135"/>
            <exon e_start="76386" e_stop="76305"/>
            <exon e_start="76231" e_stop="76165"/>
            <exon e_start="76093" e_stop="76039"/>
            <exon e_start="75692" e_stop="75524"/>
            <exon e_start="75427" e_stop="75339"/>
            <exon e_start="75177" e_stop="75097"/>
            <exon e_start="75026" e_stop="74712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.188" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79223" e_stop="78890" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.934">
            <gDNA_intron_boundary i_start="78889" i_stop="78715" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78714" e_stop="78655" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78654" i_stop="78532" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78531" e_stop="78387" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.188" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78386" i_stop="78293" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78292" e_stop="78135" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.903">
            <gDNA_intron_boundary i_start="78134" i_stop="76387" i_length="1748"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76386" e_stop="76305" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76304" i_stop="76232" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76231" e_stop="76165" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76164" i_stop="76094" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76093" e_stop="76039" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="76038" i_stop="75693" i_length="346"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75692" e_stop="75524" e_length="169"/>
          </exon>
          <intron i_serial="8" don_prob="0.907" acc_prob="0.879">
            <gDNA_intron_boundary i_start="75523" i_stop="75428" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="75427" e_stop="75339" e_length="89"/>
          </exon>
          <intron i_serial="9" don_prob="0.938" acc_prob="0.957">
            <gDNA_intron_boundary i_start="75338" i_stop="75178" i_length="161"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="75177" e_stop="75097" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="75096" i_stop="75027" i_length="70"/>
          </intron>
          <exon e_serial="11" e_score="0.975">
            <gDNA_exon_boundary e_start="75026" e_stop="74712" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79223" stop="78890"/>
              <exon start="78714" stop="78655"/>
              <exon start="78531" stop="78387"/>
              <exon start="78292" stop="78135"/>
              <exon start="76386" stop="76305"/>
              <exon start="76231" stop="76165"/>
              <exon start="76093" stop="76039"/>
              <exon start="75692" stop="75524"/>
              <exon start="75427" stop="75339"/>
              <exon start="75177" stop="75097"/>
              <exon start="75026" stop="74712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTGCGAAAATCTGGAATTTAAAGGAGGGTCCAACGGCTATGAAAGGAAGGGTTTAGGGCACAAAACAATTTCAAATTTGAAAGAAGGCTCTCAAAAAAACACCACCACAAGGAAGCAGCAAGAAGAAGAAATGGAGAAGGTAGGAGGAGATTACGTATTGGATAAGGAGGCAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATAATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAG : GGAATTTATTGAAGCAATTGACAAGTACAAAGGTGAAGATCCTCTTCACCCATGGCTCCA : GTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAACAATGTGTCCGCACCTTTTGGCACGATGAACTATATAAGAATGACCTCCGTTACTTGAAAGTGTGGCTGGAATAT : GCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACACATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCAAAATAAAATTAAAACAGCAAACGAGATCTTCAATCGGGGGCTATCTAT : GAATGCAGAACCTGAAGAGAAATTGAAAGTATCCTACAAGAAGTTTTTCAGTCGTTCAATGGGTCGCCCCAAAGCAGCAGAG : GAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTC : GAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAG : AGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAG : ATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAA : AGCACAGGAGAAGGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAA : GGAGACTGAGTTGCTGAGGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTCAGAGTTACTCAACTTGTATCTTAAAAGTGTATGGAGACAATTCCTCTTTGCCCAGTGCAAGCACCGTTACAGATGTTCTAAATATATCGAGTGGAGTTGAGGAGACATTGTTGTATGTTTGGTTTTGGCAGGCTTGAGCCAAATCCTCCAGTATTTTGTTATTTAGATGGAATGATTTTATATGATTGCAACAGTTATTGAT</gDNA_template>
            <first_frame> N  I  A  K  I  W  N  L  K  E  G  P  T  A  M  K  G  R  V  *  G  T  K  Q  F  Q  I  *  K  K  A  L  K  K  T  P  P  Q  G  S  S  K  K  K  K  W  R  R  *  E  E  I  T  Y  W  I  R  R  Q  S  S  *  R  R  S  K  R  L  V  T  S  G  N  S  S  R  K  M  S  D  L  *  R  E  D  A  T  L  I  F  S  I  M  L  L  S  L  V  P  I  I  N  S  R  N  L  F  L  T  N  E   : G  N  L  L  K  Q  L  T  S  T  K  V  K  I  L  F  T  H  G  S   : S  A  S  S  G  C  K  R  L  S  L  P  V  G  T  V  L  D  L  *  L  F  M  N  N  V  S  A  P  F  G  T  M  N  Y  I  R  M  T  S  V  T  *  K  C  G  W  N  M :   L  K  I  V  W  M  L  K  S  F  I  A  F  W  R  L  T  K  L  D  *  H  I  L  H  S  T  *  P  M  L  C  T  W  N  L  K  I  K  L  K  Q  Q  T  R  S  S  I  G  G  Y  L   : *  M  Q  N  L  K  R  N  *  K  Y  P  T  R  S  F  S  V  V  Q  W  V  A  P  K  Q  Q  R :   R  R  *  Q  N  T  S  F  Q  *  E  A  L  A  H  C  W  L  G  G  K  L  :  E  T  K  Q  Q  E  L  L  N  C  P  G  R  K  *  N  Q  I   : E  L  R  G  A  Y  F  P  F  T  K  M  Q  M  P  E  C  H  Q  L  F  N  Q  K  Y  Q  S  *  R  I  H  H  G  T  V  L  V  P  E  Q  I  G  T  R  R  I  R  Q  S  L  Q  S  G  H  L  I  R :   F  L  K  D  T  G  L  E  I  E  E  L  L  L  P  P  L  R  A  *  R  S  L  W  M  R  N  V  P   : K  H  R  R  R  T  L  L  L  V  *  R  L  L  V  C  S  L  D  E  E  M  T  K  T  *  K   : R  R  L  S  C  *  G  R  I  P  C  V  I  F  H  Q  A  H  Y  Q  D  D  R  S  H  R  R  K  S  S  L  C  A  G  I  S  H  L  R  V  T  Q  L  V  S  *  K  C  M  E  T  I  P  L  C  P  V  Q  A  P  L  Q  M  F  *  I  Y  R  V  E  L  R  R  H  C  C  M  F  G  F  G  R  L  E  P  N  P  P  V  F  C  Y  L  D  G  M  I  L  Y  D  C  N  S  Y  *  </first_frame>
            <second_frame>  I  L  R  K  S  G  I  *  R  R  V  Q  R  L  *  K  E  G  F  R  A  Q  N  N  F  K  F  E  R  R  L  S  K  K  H  H  H  K  E  A  A  R  R  R  N  G  E  G  R  R  R  L  R  I  G  *  G  G  R  V  L  S  V  E  A  R  D  W  S  R  V  G  T  L  Q  G  K  C  Q  T  F  E  E  R  T  Q  R  *  S  S  Q  *  C  S  *  V  *  Y  R  L  S  T  Q  E  I  S  S  *  Q  T  K  :  G  I  Y  *  S  N  *  Q  V  Q  R  *  R  S  S  S  P  M  A  P  :  V  H  Q  V  G  A  R  G  F  P  S  R  W  G  Q  F  W  T  Y  S  Y  L  *  T  M  C  P  H  L  L  A  R  *  T  I  *  E  *  P  P  L  L  E  S  V  A  G  I   : C  *  K  L  Y  G  C  *  S  H  L  *  L  S  G  G  *  Q  N  W  T  D  T  F  F  I  L  H  S  L  C  F  A  H  G  I  S  K  *  N  *  N  S  K  R  D  L  Q  S  G  A  I  Y  :  E  C  R  T  *  R  E  I  E  S  I  L  Q  E  V  F  Q  S  F  N  G  S  P  Q  S  S  R   : G  G  D  N  R  T  P  A  S  N  E  K  L  W  H  T  V  G  *  G  G  S  S :   K  P  N  N  R  N  F  *  I  V  P  E  E  N  E  T  R  *  :  S  S  G  E  P  I  F  H  L  Q  R  C  K  C  R  N  V  I  N  S  S  I  R  N  T  K  A  R  E  Y  I  M  A  L  S  W  C  P  S  R  *  E  Q  G  E  S  G  N  P  F  K  V  D  I  *  *   : D  S  S  K  T  R  A  *  K  S  R  S  Y  Y  Y  H  H  S  V  P  R  D  L  C  G  *  G  M  C  Q  :  S  T  G  E  G  L  C  C  W  C  K  G  F  *  S  A  A  *  T  R  R  *  Q  R  H  K  K  :  G  D  *  V  A  E  G  E  S  P  A  L  F  S  T  K  L  I  T  K  M  I  D  L  T  E  E  S  H  H  C  V  L  G  F  L  I  S  E  L  L  N  L  Y  L  K  S  V  W  R  Q  F  L  F  A  Q  C  K  H  R  Y  R  C  S  K  Y  I  E  W  S  *  G  D  I  V  V  C  L  V  L  A  G  L  S  Q  I  L  Q  Y  F  V  I  *  M  E  *  F  Y  M  I  A  T  V  I  D </second_frame>
            <third_frame>   Y  C  E  N  L  E  F  K  G  G  S  N  G  Y  E  R  K  G  L  G  H  K  T  I  S  N  L  K  E  G  S  Q  K  N  T  T  T  R  K  Q  Q  E  E  E  M  E  K  V  G  G  D  Y  V  L  D  K  E  A  E  F  L  A  S  K  Q  E  T  G  H  E  W  E  L  F  K  E  N  V  R  P  L  K  R  G  R  N  V  N  L  L  N  N  A  L  K  S  S  T  D  Y  Q  L  K  K  S  L  L  D  K  R  R :   E  F  I  E  A  I  D  K  Y  K  G  E  D  P  L  H  P  W  L  Q :   C  I  K  W  V  Q  E  A  F  P  P  G  G  D  S  S  G  L  I  V  I  Y  E  Q  C  V  R  T  F  W  H  D  E  L  Y  K  N  D  L  R  Y  L  K  V  W  L  E  Y  :  A  E  N  C  M  D  A  E  V  I  Y  S  F  L  E  A  N  K  I  G  L  T  H  S  S  F  Y  I  A  Y  A  L  H  M  E  S  Q  N  K  I  K  T  A  N  E  I  F  N  R  G  L  S  M :   N  A  E  P  E  E  K  L  K  V  S  Y  K  K  F  F  S  R  S  M  G  R  P  K  A  A  E  :  E  E  I  T  E  H  Q  L  P  M  R  S  F  G  T  L  L  A  R  G  E  A   : R  N  Q  T  T  G  T  S  E  L  S  R  K  K  M  K  P  D  R :   A  Q  G  S  L  F  S  I  Y  K  D  A  N  A  G  M  S  S  T  L  Q  S  E  I  P  K  L  E  N  T  S  W  H  C  L  G  A  R  A  D  R  N  K  E  N  Q  A  I  P  S  K  W  T  S  N  K  :  I  P  Q  R  H  G  L  R  N  R  G  A  T  T  T  T  T  P  C  L  E  I  F  V  D  E  E  C  A  K :   A  Q  E  K  D  S  A  A  G  V  K  A  S  S  L  Q  L  R  R  G  D  D  K  D  I  K  K :   E  T  E  L  L  R  E  N  P  L  R  Y  F  P  P  S  S  L  P  R  *  S  I  S  Q  K  K  V  I  I  V  C  W  D  F  S  S  Q  S  Y  S  T  C  I  L  K  V  Y  G  D  N  S  S  L  P  S  A  S  T  V  T  D  V  L  N  I  S  S  G  V  E  E  T  L  L  Y  V  W  F  W  Q  A  *  A  K  S  S  S  I  L  L  F  R  W  N  D  F  I  *  L  Q  Q  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79221" stop="78890"/>
                    <exon start="78714" stop="78655"/>
                    <exon start="78531" stop="78387"/>
                    <exon start="78292" stop="78135"/>
                    <exon start="76386" stop="76305"/>
                    <exon start="76231" stop="76165"/>
                    <exon start="76093" stop="76039"/>
                    <exon start="75692" stop="75524"/>
                    <exon start="75427" stop="75339"/>
                    <exon start="75177" stop="75097"/>
                    <exon start="75026" stop="74963"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCENLEFKGGSNGYERKGLGHKTISNLKEGSQKNTTTRKQQEEEMEKVGGDYVLDKEAEFLASKQETGHEWELFKENVRPLKRGRNVNLLNNALKSSTDYQLKKSLLDKRREFIEAIDKYKGEDPLHPWLQCIKWVQEAFPPGGDSSGLIVIYEQCVRTFWHDELYKNDLRYLKVWLEYAENCMDAEVIYSFLEANKIGLTHSSFYIAYALHMESQNKIKTANEIFNRGLSMNAEPEEKLKVSYKKFFSRSMGRPKAAEEEITEHQLPMRSFGTLLARGEARNQTTGTSELSRKKMKPDRAQGSLFSIYKDANAGMSSTLQSEIPKLENTSWHCLGARADRNKENQAIPSKWTSNKIPQRHGLRNRGATTTTTPCLEIFVDEECAKAQEKDSAAGVKASSLQLRRGDDKDIKKETELLRENPLRYFPPSSLPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="81312" PGL_stop="81992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81312" e_stop="81992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="81312" e_stop="81992" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81312" stop="81992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324311" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCACAAGAAATCTGTACATTTTTTTTCCACCAGAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</gDNA_template>
            <first_frame> I  S  Q  E  I  C  T  F  F  F  H  Q  K  S  T  D  I  R  K  K  S  S  I  I  N  N  C  D  G  F  E  L  E  A  G  I  Y  I  P  N  S  C  C  *  C  N  W  I  Q  E  E  R  S  A  K  G  D  D  D  D  E  W  I  S  R  S  T  K  V  *  G  D  A  D  E  R  K  T  A  D  G  N  D  R  E  E  S  E  G  S  *  G  G  M  Q  *  R  R  Q  I  G  R  V  Q  G  G  M  G  *  G  G  R  S  *  L  G  *  G  A  F  A  H  Q  A  S  A  *  S  R  S  P  *  T  L  L  S  K  *  P  *  R  R  R  V  P  H  L  *  P  L  I  N  *  L  L  G  F  H  S  C  C  T  W  T  C  L  L  Y  F  S  P  I  *  Y  D  Y  S  *  L  L  V  Q  N  P  P  S  A  F  Q  V  C  Y  I  S  V  S  S  L  L  Y  E  A  F  V  R  *  V  Q  M  S  C  P  Y  I  Y  R  R  I  K  Q  V  D  I  E  R  R  * </first_frame>
            <second_frame>  F  H  K  K  S  V  H  F  F  S  T  R  N  Q  Q  T  S  E  K  S  H  L  *  *  I  I  V  M  A  L  N  L  K  Q  A  S  I  F  P  I  H  V  A  S  V  T  G  S  R  R  K  G  V  Q  K  V  M  M  M  M  S  G  S  A  G  V  P  K  Y  K  G  T  Q  M  R  E  K  Q  L  T  E  M  I  E  K  K  V  K  E  A  K  E  V  C  S  E  D  A  R  S  D  E  C  K  V  A  W  D  E  V  E  E  V  S  *  A  K  V  H  L  R  I  K  L  Q  L  N  Q  D  P  L  E  P  Y  C  Q  N  N  P  D  A  D  E  C  R  T  Y  D  H  *  L  I  N  Y  *  D  F  T  L  V  V  L  G  L  V  Y  C  I  S  L  Q  F  S  M  I  T  V  N  Y  *  Y  K  T  L  H  L  L  F  R  F  V  I  L  V  Y  L  H  C  F  M  K  H  L  L  G  K  F  K  C  H  V  H  I  Y  T  D  E  *  N  K  *  I  L  S  D  V   </second_frame>
            <third_frame>   F  T  R  N  L  Y  I  F  F  P  P  E  I  N  R  H  P  K  K  V  I  Y  N  K  *  L  *  W  L  *  T  *  S  R  H  L  Y  S  Q  F  M  L  L  V  *  L  D  P  G  G  K  E  C  K  R  *  *  *  *  *  V  D  Q  Q  E  Y  Q  S  I  R  G  R  R  *  E  K  N  S  *  R  K  *  *  R  R  K  *  R  K  L  R  R  Y  A  V  K  T  P  D  R  T  S  A  R  W  H  G  M  R  W  K  K  L  A  R  L  R  C  I  C  A  S  S  F  S  L  I  K  I  P  L  N  L  T  V  K  I  T  L  T  P  T  S  A  A  P  M  T  I  N  *  L  I  I  R  I  S  L  L  L  Y  L  D  L  S  T  V  F  L  S  N  L  V  *  L  Q  L  I  T  S  T  K  P  S  I  C  F  S  G  L  L  Y  *  C  I  F  T  A  L  *  S  I  C  *  V  S  S  N  V  M  S  I  Y  I  Q  T  N  K  T  S  R  Y  *  A  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81385" stop="81657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVMALNLKQASIFPIHVASVTGSRRKGVQKVMMMMSGSAGVPKYKGTQMREKQLTEMIEKKVKEAKEVCSEDARSDECKVAWDEVEEVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="82653" PGL_stop="91508"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82653" e_stop="82762"/>
            <exon e_start="82828" e_stop="82994"/>
            <exon e_start="83137" e_stop="83283"/>
            <exon e_start="83895" e_stop="84027"/>
            <exon e_start="84759" e_stop="84851"/>
            <exon e_start="90916" e_stop="91508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.955" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="82653" e_stop="82762" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.955">
            <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82828" e_stop="82994" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83137" e_stop="83283" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.933">
            <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83895" e_stop="84027" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.966">
            <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84759" e_stop="84851" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90916" e_stop="91508" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82653" stop="82762"/>
              <exon start="82828" stop="82994"/>
              <exon start="83137" stop="83283"/>
              <exon start="83895" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG : CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG : TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA : TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG : GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG : GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAACTTCTGTTTATGATGGGATGTAAATAATAAGGAAGCAAGTATGTTGCTTGTT</gDNA_template>
            <first_frame> H  C  F  S  F  P  I  Y  R  P  P  S  L  K  T  K  G  C  I  A  M  Q  V  H  S  I  P  F  R  V  T  R  L  H  G  K  S :   L  P  A  F  W  Y  S  Q  R  F  L  S  P  L  S  K  L  S  P  T  V  P  S  V  K  H  S  V  N  D  *  K  R  E  R  R  L  Q  *  R  I  Q  L  S  S  K  H  L  H  *  W  Q  E  T  I   : V  S  G  M  E  K  I  A  P  A  G  L  V  Q  F  L  M  T  I  L  L  I  L  M  G  S  Y  P  G  T  M  D  L  I  S  A  G  *  A  R  I  P  W  P  F  K  T  T  L   : I  M  K  Y  C  M  V  V  G  L  C  W  L  L  L  V  L  *  F  Q  N  F  *  T  *  Q  D  F  S  S  L  W  N  L  F  G  G  E  W  A  T  Q  S  L  R :   E  I  H  L  T  I  *  G  S  L  D  S  I  *  L  E  V  K  E  S  L  S  *  P  F  A  K  P  F  *  W :   L  D  Q  N  M  Q  G  I  V  E  L  R  L  W  N  R  *  E  F  T  C  L  V  T  S  T  I  L  E  V  F  F  L  I  H  *  I  S  L  K  I  R  W  L  L  K  S  *  R  L  K  K  *  K  M  G  A  L  L  W  L  P  G  *  A  F  M  S  K  P  L  L  R  V  K  A  L  C  K  T  F  W  S  I  S  Q  I  H  S  T  I  T  C  S  P  F  *  S  L  C  K  R  I  H  L  S  K  V  D  N  G  V  *  A  S  Q  V  *  L  F  C  L  L  Y  I  *  G  C  N  M  *  T  H  N  S  S  E  N  S  V  I  P  R  K  G  E  D  M  L  C  P  E  E  Y  L  R  L  S  I  P  M  N  L  I  W  S  C  L  *  W  D  V  K  *  L  L  L  L  F  K  L  L  F  M  M  G  C  K  *  *  G  S  K  Y  V  A  C  </first_frame>
            <second_frame>  T  A  S  A  S  P  S  I  V  L  R  P  *  R  P  K  V  V  S  Q  C  K  C  T  R  S  L  F  A  S  Q  G  F  M  A  R   : A  C  R  R  S  G  I  L  S  D  S  F  H  R  C  Q  S  Y  R  Q  Q  Y  L  R  *  N  T  P  *  T  I  R  R  E  K  E  G  C  S  R  E  F  S  *  V  Q  S  T  C  T  N  G  K  K  R  *  :  Y  L  V  W  R  R  S  P  P  L  A  W  S  N  F  L  *  L  S  C  L  S  *  W  G  A  T  R  G  L  W  I  *  Y  L  R  V  E  Q  G  S  R  G  P  S  K  L  L  *  :  L  *  N  I  A  W  S  L  G  Y  A  G  C  S  W  C  F  D  S  R  T  F  K  P  D  R  T  F  P  V  C  G  T  C  L  V  A  S  G  L  L  K  A  *   : G  R  Y  T  *  L  F  R  D  P  W  T  P  F  S  W  K  S  R  S  H  C  H  S  H  L  P  S  P  F  D   : G  W  T  R  I  C  K  V  L  W  N  *  G  F  G  T  V  R  N  L  L  A  W  *  H  Q  L  S  W  R  C  S  F  *  S  I  E  S  L  *  R  S  D  G  F  *  R  A  K  G  *  R  N  K  K  W  A  P  C  Y  G  C  L  V  R  L  L  C  P  S  R  S  Y  G  *  R  P  C  A  K  P  S  G  A  Y  L  R  S  I  P  Q  *  L  A  L  H  S  K  V  S  V  R  E  F  T  Y  P  K  L  T  M  G  F  K  P  P  R  Y  N  C  S  V  F  F  I  F  K  A  V  I  C  E  L  I  I  H  L  K  I  V  S  Y  L  E  K  V  K  T  C  C  A  Q  K  S  I  *  G  C  P  Y  Q  *  T  L  Y  G  L  V  Y  N  G  M  L  N  D  Y  C  Y  C  L  N  F  C  L  *  W  D  V  N  N  K  E  A  S  M  L  L  V </second_frame>
            <third_frame>   L  L  Q  L  P  H  L  S  S  S  V  P  K  D  Q  R  L  Y  R  N  A  S  A  L  D  P  F  S  R  H  K  A  S  W  Q  E  :  L  A  G  V  L  V  F  S  A  I  P  F  T  A  V  K  A  I  A  N  S  T  F  G  E  T  L  R  K  R  L  E  E  R  K  K  V  A  V  E  N  S  A  K  F  K  A  L  A  L  M  A  R  N  D  S :   I  W  Y  G  E  D  R  P  R  W  L  G  P  I  S  Y  D  Y  P  A  Y  L  N  G  E  L  P  G  D  Y  G  F  D  I  C  G  L  S  K  D  P  V  A  L  Q  N  Y  F  N :   Y  E  I  L  H  G  R  W  A  M  L  A  A  L  G  A  L  I  P  E  L  L  N  L  T  G  L  F  Q  F  V  E  P  V  W  W  R  V  G  Y  S  K  L  K  :  G  D  T  L  D  Y  L  G  I  P  G  L  H  L  A  G  S  Q  G  V  I  V  I  A  I  C  Q  A  L  L  M  :  V  G  P  E  Y  A  R  Y  C  G  I  E  A  L  E  P  L  G  I  Y  L  P  G  D  I  N  Y  P  G  G  V  L  F  D  P  L  N  L  S  K  D  P  M  A  F  E  E  L  K  V  K  E  I  K  N  G  R  L  A  M  V  A  W  L  G  F  Y  V  Q  A  A  L  T  G  K  G  P  V  Q  N  L  L  E  H  I  S  D  P  F  H  N  N  L  L  S  I  L  K  S  L  *  E  N  S  L  I  Q  S  *  Q  W  G  L  S  L  P  G  I  I  V  L  S  S  L  Y  L  R  L  *  Y  V  N  S  *  F  I  *  K  *  C  H  T  *  K  R  *  R  H  V  V  P  R  R  V  F  E  V  V  H  T  N  E  P  Y  M  V  L  F  I  M  G  C  *  M  T  I  V  I  V  *  T  S  V  Y  D  G  M  *  I  I  R  K  Q  V  C  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82655" stop="82762"/>
                    <exon start="82828" stop="82994"/>
                    <exon start="83137" stop="83283"/>
                    <exon start="83895" stop="84027"/>
                    <exon start="84759" stop="84851"/>
                    <exon start="90916" stop="91218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQLPHLSSSVPKDQRLYRNASALDPFSRHKASWQELAGVLVFSAIPFTAVKAIANSTFGETLRKRLEERKKVAVENSAKFKALALMARNDSIWYGEDRPRWLGPISYDYPAYLNGELPGDYGFDICGLSKDPVALQNYFNYEILHGRWAMLAALGALIPELLNLTGLFQFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDPMAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLLEHISDPFHNNLLSILKSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87184" e_stop="87743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87184" e_stop="87743" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87184" stop="87743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</gDNA_template>
            <first_frame> K  N  T  H  H  Y  W  H  F  *  T  I  T  C  *  H  L  G  S  I  S  N  N  N  S  *  *  L  Q  V  F  H  Y  L  S  R  *  L  *  *  I  Y  L  D  T  T  S  K  L  *  K  Q  C  F  P  C  P  *  S  L  Y  T  H  G  *  E  P  V  Q  H  H  C  *  N  H  Q  I  R  *  W  F  G  I  H  *  Q  *  N  H  S  I  F  S  I  Q  R  D  H  P  S  E  I  L  P  L  Y  S  S  T  K  W  C  G  R  K  K  A  Q  I  Y  S  *  N  S  K  G  S  T  F  S  V  *  T  P  S  E  I  L  E  *  M  *  L  A  S  T  Y  L  I  N  R  L  P  S  F  P  L  H  N  K  T  P  Y  E  I  L  Y  K  H  K  P  I  Y  S  H  L  K  S  F  G  C  L  C  Y  P  T   </first_frame>
            <second_frame>  K  T  H  T  T  T  G  I  F  E  L  L  H  V  D  I  W  G  P  Y  Q  T  T  T  H  D  N  F  K  Y  F  I  T  L  V  D  D  F  S  K  S  T  W  T  Q  L  L  S  C  K  S  N  A  F  H  V  L  K  A  F  I  L  M  V  E  N  Q  F  S  T  T  V  K  T  I  R  S  D  N  G  L  E  F  T  S  N  E  T  T  L  F  F  Q  S  K  G  I  I  H  Q  K  S  C  P  Y  T  P  Q  Q  N  G  V  V  E  R  K  H  K  F  I  L  E  T  A  R  A  L  L  F  Q  S  K  L  P  V  K  Y  W  S  E  C  N  L  L  P  H  I  L  *  I  D  Y  L  L  F  L  S  T  I  K  L  H  M  K  F  Y  I  N  T  N  L  S  T  L  T  *  R  V  L  D  V  Y  V  I  L  L  </second_frame>
            <third_frame>   K  H  T  P  L  L  A  F  L  N  Y  Y  M  L  T  S  G  V  H  I  K  Q  Q  L  M  I  T  S  S  I  S  L  P  *  *  M  T  L  V  N  L  P  G  H  N  F  *  A  V  K  A  M  L  S  M  S  L  K  P  L  Y  S  W  L  R  T  S  S  A  P  L  L  K  P  S  D  Q  I  M  V  W  N  S  L  A  M  K  P  L  Y  F  F  N  P  K  G  S  S  I  R  N  P  A  P  I  L  L  N  K  M  V  W  S  K  E  S  T  N  L  F  L  K  Q  Q  G  L  Y  F  F  S  L  N  S  Q  *  N  I  G  V  N  V  T  C  F  H  I  S  Y  K  *  T  T  F  F  S  S  P  Q  *  N  S  I  *  N  F  I  *  T  Q  T  Y  L  L  S  P  K  E  F  W  M  F  M  L  S  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87185" stop="87631"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQNGVVERKHKFILETARALLFQSKLPVKYWSECNLLPHIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="94489" PGL_stop="95342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94489" e_stop="95342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="94489" e_stop="95342" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94489" stop="95342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACTCCAAGTAATTTGGTAGTGACATTGCTCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTCAGCCCGCCATATACCTACGAGTATCTGTATTGCGGTTCCTCCTTGTATGGAAATTTGAGTGCATCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCCGGCGGGGTGTCATCCGAGGTAAGGGCCGTGCTGGAGCCGTGGGTACAGGCTGGTAGGGTCACGCTTCAGGATATAAGGGACCAATCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCTCCATCGCTACAGACACTCTGCCTATTGGACCTTCTACTTTGATGTTGACGAGTACATATATCTTCCTG</gDNA_template>
            <first_frame> *  N  S  K  *  F  G  S  D  I  A  R  L  H  S  C  D  A  H  L  E  S  P  T  L  L  R  Y  H  P  *  S  P  C  I  L  Q  H  Y  R  P  *  Q  T  N  L  H  Y  L  R  Q  C  R  L  S  L  R  P  D  G  S  L  S  R  R  S  H  Y  F  R  R  R  R  S  R  F  Q  A  A  S  R  L  W  P  P  M  V  *  M  R  V  D  P  Q  Y  *  Y  K  L  I  *  G  Q  S  L  *  D  P  P  *  L  G  L  R  P  C  L  H  C  G  G  C  E  L  H  I  Y  C  E  S  *  P  *  *  *  R  R  E  A  H  S  L  R  L  L  *  *  V  T  Q  E  I  R  E  N  H  S  I  G  G  S  T  R  V  L  Q  P  I  Q  V  Q  P  A  I  Y  L  R  V  S  V  L  R  F  L  L  V  W  K  F  E  C  I  *  D  E  G  V  D  G  L  S  R  L  V  F  R  A  Q  L  P  F  R  V  S  R  R  R  R  G  V  I  R  G  K  G  R  A  G  A  V  G  T  G  W  *  G  H  A  S  G  Y  K  G  P  I  R  V  R  W  L  L  L  Q  P  V  F  G  G  E  *  L  P  P  S  L  Q  T  L  C  L  L  D  L  L  L  *  C  *  R  V  H  I  S  S   </first_frame>
            <second_frame>  K  T  P  S  N  L  V  V  T  L  L  A  F  T  L  V  M  L  I  W  N  L  Q  P  Y  Y  D  T  I  L  N  P  P  A  S  S  N  I  T  D  P  N  K  R  T  F  I  T  Y  G  N  A  A  S  L  F  V  Q  M  G  A  Y  R  G  G  P  T  T  F  A  V  V  G  L  A  S  K  P  L  H  V  F  G  R  P  W  Y  K  C  E  W  I  P  N  T  N  T  N  S  S  K  A  K  A  Y  K  I  L  P  D  W  G  Y  G  R  V  Y  T  V  V  V  V  N  C  T  F  T  V  N  P  N  L  D  N  N  G  G  K  L  I  L  Y  A  Y  Y  S  E  S  P  K  R  Y  E  K  I  T  A  L  E  E  A  P  G  S  Y  N  Q  S  K  F  S  P  P  Y  T  Y  E  Y  L  Y  C  G  S  S  L  Y  G  N  L  S  A  S  R  M  R  E  W  M  A  Y  H  A  W  F  F  G  P  S  S  H  F  V  F  H  D  A  G  G  V  S  S  E  V  R  A  V  L  E  P  W  V  Q  A  G  R  V  T  L  Q  D  I  R  D  Q  S  E  F  D  G  Y  Y  Y  N  Q  F  L  V  V  N  D  C  L  H  R  Y  R  H  S  A  Y  W  T  F  Y  F  D  V  D  E  Y  I  Y  L  P  </second_frame>
            <third_frame>   K  L  Q  V  I  W  *  *  H  C  S  P  S  L  L  *  C  S  F  G  I  S  N  L  T  T  I  P  S  L  I  P  L  H  P  P  T  L  P  T  L  T  N  E  P  S  L  P  T  A  M  P  P  L  S  S  S  R  W  E  P  I  A  A  V  P  L  L  S  P  S  S  V  S  L  P  S  R  F  T  S  L  A  A  H  G  I  N  A  S  G  S  P  I  L  I  Q  T  H  L  R  P  K  P  I  R  S  S  L  T  G  V  T  A  V  S  T  L  W  W  L  *  T  A  H  L  L  *  I  L  T  L  I  I  T  E  G  S  S  F  S  T  L  T  I  V  S  H  P  R  D  T  R  K  S  Q  H  W  R  K  H  Q  G  L  T  T  N  P  S  S  A  R  H  I  P  T  S  I  C  I  A  V  P  P  C  M  E  I  *  V  H  L  G  *  G  S  G  W  P  I  T  P  G  F  S  G  P  A  P  I  S  C  F  T  T  P  A  G  C  H  P  R  *  G  P  C  W  S  R  G  Y  R  L  V  G  S  R  F  R  I  *  G  T  N  P  S  S  M  A  T  I  T  T  S  F  W  W  *  M  I  A  S  I  A  T  D  T  L  P  I  G  P  S  T  L  M  L  T  S  T  Y  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94490" stop="95341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTPSNLVVTLLAFTLVMLIWNLQPYYDTILNPPASSNITDPNKRTFITYGNAASLFVQMGAYRGGPTTFAVVGLASKPLHVFGRPWYKCEWIPNTNTNSSKAKAYKILPDWGYGRVYTVVVVNCTFTVNPNLDNNGGKLILYAYYSESPKRYEKITALEEAPGSYNQSKFSPPYTYEYLYCGSSLYGNLSASRMREWMAYHAWFFGPSSHFVFHDAGGVSSEVRAVLEPWVQAGRVTLQDIRDQSEFDGYYYNQFLVVNDCLHRYRHSAYWTFYFDVDEYIYLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="96217" PGL_stop="96567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96217" e_stop="96567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96217" e_stop="96567" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96217" stop="96567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATACCAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTT</gDNA_template>
            <first_frame> I  K  D  F  E  R  N  T  I  N  I  N  A  A  P  D  H  T  N  N  S  *  D  Q  L  F  H  P  Y  I  V  Q  Q  Y  C  T  I  I  L  V  T  T  V  K  R  K  E  L  V  N  K  C  F  S  S  S  V  H  P  Y  S  *  F  L  Q  L  L  *  G  H  H  T  L  F  L  L  A  G  F  G  Y  *  Y  Q  I  I  H  L  Y  P  H  I  A  K  L  G  *  F  G  K  R  E  R  *  G  F  V  C  K  W  *  S  L  T  F  S  F </first_frame>
            <second_frame>  S  R  I  L  S  E  I  L  S  I  L  M  Q  L  P  T  I  P  I  T  H  R  T  S  Y  F  T  L  T  *  Y  S  S  I  V  P  *  F  *  L  P  Q  *  R  E  R  N  W  *  T  S  V  S  V  V  V  F  I  P  T  P  N  S  C  N  S  C  R  V  T  T  L  Y  F  C  W  L  D  L  V  I  N  I  K  S  F  I  C  I  H  I  L  Q  S  *  V  D  L  G  K  E  R  D  E  D  L  S  V  N  G  N  R  *  H  F  L   </second_frame>
            <third_frame>   Q  G  F  *  A  K  Y  Y  Q  Y  *  C  S  S  R  P  Y  Q  *  L  I  G  P  V  I  S  P  L  H  S  T  A  V  L  Y  H  N  F  S  Y  H  S  E  E  K  G  T  G  E  Q  V  F  Q  *  *  C  S  S  L  L  L  I  L  A  T  P  V  G  S  P  H  F  I  S  A  G  W  I  W  L  L  I  S  N  H  S  F  V  S  T  Y  C  K  V  R  L  I  W  E  K  R  E  M  R  I  C  L  *  M  V  I  V  N  I  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0059M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="104434" PGL_stop="105227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104434" e_stop="105227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="104434" e_stop="105227" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104434" stop="105227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAACCATGTATTACTTATTAGTACAGTTTAACCAAAAAAATCTACACTTGACGATAC</gDNA_template>
            <first_frame> L  P  P  R  I  S  S  I  K  S  S  *  P  A  T  S  S  Q  L  V  E  S  S  V  N  I  A  F  P  S  T  S  L  K  F  F  N  L  T  S  L  P  P  S  Y  A  V  P  T  V  F  T  L  T  I  S  Y  L  H  L  I  P  N  T  S  F  F  P  I  R  S  I  S  C  F  R  P  P  S  L  N  I  H  S  L  P  L  T  W  Q  L  L  P  *  R  Q  A  L  L  W  K  N  S  T  K  T  K  A  E  S  L  G  R  S  R  V  R  T  E  F  H  P  C  F  F  H  *  N  K  K  P  I  I  I  T  S  P  L  P  *  D  L  G  F  P  *  D  L  H  R  S  E  N  C  S  D  Y  L  H  A  G  Q  R  W  L  C  D  P  S  V  S  L  S  P  F  K  K  G  S  F  F  F  S  *  *  Y  I  L  F  G  C  R  *  T  C  D  A  S  *  C  S  S  L  A  L  H  V  Y  V  Y  I  Y  I  Y  I  V  N  T  K  Q  I  Y  I  L  H  I  Y  D  *  I  S  L  Y  V  N  G  T  *  L  I  S  L  Y  N  N  N  N  H  V  L  L  I  S  T  V  *  P  K  K  S  T  L  D  D   </first_frame>
            <second_frame>  F  L  L  E  Y  R  R  S  K  A  A  D  Q  L  R  H  L  N  W  W  R  A  P  S  I  *  R  S  H  Q  R  L  S  S  S  S  I  *  H  L  F  H  L  P  M  Q  F  R  P  S  L  L  *  P  F  H  T  F  T  *  F  P  I  P  A  S  S  Q  S  D  L  F  H  A  S  G  L  Q  A  *  I  S  T  H  C  L  *  H  G  S  S  C  P  K  G  K  H  C  S  G  R  T  Q  Q  K  Q  K  P  K  V  *  E  D  H  E  *  E  P  N  F  T  H  A  S  S  T  R  T  R  N  Q  *  L  L  Q  V  H  Y  R  R  T  W  D  F  H  E  I  C  I  G  Q  K  I  A  A  I  I  F  T  P  G  K  D  G  C  A  I  L  P  *  A  Y  H  H  S  R  R  V  R  S  F  L  V  N  D  I  F  F  L  V  A  G  K  H  A  M  R  V  S  A  L  L  S  L  Y  T  C  M  C  I  Y  I  Y  I  *  *  I  Q  N  K  Y  I  F  Y  I  Y  T  I  K  F  P  C  M  *  M  V  L  N  *  L  A  C  T  T  T  T  T  M  Y  Y  L  L  V  Q  F  N  Q  K  N  L  H  L  T  I  </second_frame>
            <third_frame>   S  S  S  N  I  V  D  Q  K  Q  L  T  S  Y  V  I  S  I  G  G  E  L  R  Q  Y  S  V  P  I  N  V  S  Q  V  L  Q  S  D  I  S  S  T  F  L  C  S  S  D  R  L  Y  F  D  H  F  I  P  S  L  D  S  Q  Y  Q  L  L  P  N  Q  I  Y  F  M  L  P  A  S  K  L  K  Y  P  L  T  A  S  D  M  A  A  L  A  L  K  A  S  T  A  L  E  E  L  N  K  N  K  S  R  K  S  R  K  I  T  S  K  N  R  I  S  P  M  L  L  P  L  E  Q  E  T  N  N  Y  Y  K  S  T  T  V  G  L  G  I  S  M  R  S  A  S  V  R  K  L  Q  R  L  S  S  R  R  A  K  M  A  V  R  S  F  R  K  L  I  T  I  Q  E  G  F  V  L  F  *  L  M  I  Y  S  F  W  L  P  V  N  M  R  C  E  L  V  L  F  S  R  S  T  R  V  C  V  Y  I  Y  I  Y  S  K  Y  K  T  N  I  Y  F  T  Y  I  R  L  N  F  L  V  C  K  W  Y  L  I  N  *  L  V  Q  Q  Q  Q  P  C  I  T  Y  *  Y  S  L  T  K  K  I  Y  T  *  R  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104436" stop="104981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSNIVDQKQLTSYVISIGGELRQYSVPINVSQVLQSDISSTFLCSSDRLYFDHFIPSLDSQYQLLPNQIYFMLPASKLKYPLTASDMAALALKASTALEELNKNKSRKSRKITSKNRISPMLLPLEQETNNYYKSTTVGLGISMRSASVRKLQRLSSRRAKMAVRSFRKLITIQEGFVLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="107154" PGL_stop="111074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107154" e_stop="107381"/>
            <exon e_start="107448" e_stop="107504"/>
            <exon e_start="107690" e_stop="107926"/>
            <exon e_start="108092" e_stop="108447"/>
            <exon e_start="108801" e_stop="108840"/>
            <exon e_start="110891" e_stop="111074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.425" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107154" e_stop="107381" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107382" i_stop="107447" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107448" e_stop="107504" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.658">
            <gDNA_intron_boundary i_start="107505" i_stop="107689" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107690" e_stop="107926" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.825">
            <gDNA_intron_boundary i_start="107927" i_stop="108091" i_length="165"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108092" e_stop="108447" e_length="356"/>
          </exon>
          <intron i_serial="4" don_prob="0.425" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108448" i_stop="108800" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108801" e_stop="108840" e_length="40"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108841" i_stop="110890" i_length="2050"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="110891" e_stop="111074" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107154" stop="107381"/>
              <exon start="107448" stop="107504"/>
              <exon start="107690" stop="107926"/>
              <exon start="108092" stop="108447"/>
              <exon start="108801" stop="108840"/>
              <exon start="110891" stop="111074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTA : GAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAG : CGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGT : GAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAG : GACACTGGTTAAGAGCCTTGAAAAGGTTGATCCAAGAAAC : AAGTAATCCAAGGAGATTATTCATTTAACTGTCAATATTAGTGTTGTACTTATATAATAAAAATATTTCTCTCATTTAATTGCGAAGTCATGTAAGCATCATTATATATACTGTGTGCGGGTGGTTCAGATCTTTCCACTAACTACATTTCTCTCTTTAAGTGTTGTTTTCAGAAAATATATCA</gDNA_template>
            <first_frame> C  V  G  I  *  C  I  W  F  T  Y  P  Y  S  I  F  F  V  N  L  E  V  E  D  Y  Y  I  *  L  C  R  L  E  L  D  C  P  C  S  S  S  V  L  I  Y  L  H  S  I  *  L  T  I  F  N  *  *  *  K  L  L  F  F  Q  S  S  H  V  L  N  M  S  P  T  P  L  :  E  P  V  H  Y  N  H  H  S  P  N  S  N  H  T  P  K  F  Q  :  R  N  L  Q  S  S  M  E  L  M  K  E  I  T  T  L  E  I  E  I  M  R  L  E  R  Y  L  L  S  L  Y  R  T  A  L  P  L  V  L  E  N  N  Q  K  I  K  I  S  S  P  T  Q  C  T  T  H  Q  S  Y  S  D  V  E  M  D  T  C  A  D  L  I  S  A  A  H  A  L  A  G  :  E  K  L  T  D  S  A  H  R  S  L  A  D  H  L  T  A  S  R  M  D  D  L  L  S  Y  P  D  R  L  S  E  E  I  V  K  C  I  S  C  I  Y  C  K  F  A  N  P  N  I  L  A  P  K  G  L  S  V  S  S  T  S  S  L  S  S  S  S  T  F  S  P  R  N  L  S  G  S  W  S  S  H  H  N  E  E  S  T  E  Q  Y  E  F  E  V  I  E  I  L  K  I  C  L  D  D  D  S  F  N  Y  A  T  T  M  L  H  K  F  R :   T  L  V  K  S  L  E  K  V  D  P  R  N  :  K  *  S  K  E  I  I  H  L  T  V  N  I  S  V  V  L  I  *  *  K  Y  F  S  H  L  I  A  K  S  C  K  H  H  Y  I  Y  C  V  R  V  V  Q  I  F  P  L  T  T  F  L  S  L  S  V  V  F  R  K  Y  I  </first_frame>
            <second_frame>  V  L  A  F  N  A  F  G  L  P  I  P  T  P  S  S  L  S  I  S  K  S  K  I  I  T  Y  N  C  V  G  W  N  W  I  A  P  A  A  P  Q  Y  *  Y  T  F  T  P  S  D  *  P  F  L  I  N  N  K  N  Y  S  S  F  R  A  L  M  S  S  I  C  L  P  H  H  * :   N  Q  Y  I  I  T  I  I  L  P  T  P  I  I  L  P  N  S  S :   A  T  C  S  L  P  W  N  *  *  K  K  L  L  L  S  K  L  R  *  C  V  W  N  D  I  F  S  H  Y  I  G  Q  L  S  R  L  Y  W  K  I  I  R  K  S  R  *  A  P  L  P  S  V  Q  H  T  N  H  T  P  M  L  K  W  I  R  V  R  I  *  S  P  L  H  M  L  W  L  V :   K  N  *  R  I  L  P  T  V  A  L  R  I  T  S  L  P  L  A  W  M  T  F  L  V  I  L  I  G  C  L  K  K  *  S  N  A  Y  L  V  Y  T  A  N  L  P  I  P  I  F  L  L  Q  R  D  Y  Q  F  L  L  L  R  H  C  H  H  Q  A  H  F  L  R  E  I  F  R  A  A  G  A  H  I  T  M  R  R  A  L  S  S  M  N  L  K  *  *  K  F  *  R  Y  V  *  M  M  I  V  S  I  M  P  Q  Q  C  C  I  S  S   : G  H  W  L  R  A  L  K  R  L  I  Q  E  T :   S  N  P  R  R  L  F  I  *  L  S  I  L  V  L  Y  L  Y  N  K  N  I  S  L  I  *  L  R  S  H  V  S  I  I  I  Y  T  V  C  G  W  F  R  S  F  H  *  L  H  F  S  L  *  V  L  F  S  E  N  I  S </second_frame>
            <third_frame>   C  W  H  L  M  H  L  V  Y  L  S  L  L  H  L  L  C  Q  S  R  S  R  R  L  L  H  I  I  V  S  A  G  I  G  L  P  L  Q  L  L  S  I  D  I  P  S  L  H  L  I  N  H  F  *  L  I  I  K  T  T  L  L  S  E  L  S  C  P  Q  Y  V  S  H  T  T   : R  T  S  T  L  *  P  S  F  S  Q  L  Q  S  Y  S  Q  I  P   : A  Q  L  A  V  F  H  G  I  D  E  R  N  Y  Y  S  R  N  *  D  N  A  F  G  T  I  S  S  L  T  I  S  D  S  S  P  A  C  I  G  K  *  S  E  N  Q  D  K  L  P  Y  P  V  Y  N  T  P  I  I  L  R  C  *  N  G  Y  V  C  G  S  N  L  R  C  T  C  F  G  W   : *  K  I  N  G  F  C  P  P  *  P  C  G  S  P  H  C  L  S  H  G  *  P  S  *  L  S  *  *  A  V  *  R  N  S  Q  M  H  I  L  Y  I  L  Q  I  C  Q  S  Q  Y  S  C  S  K  G  I  I  S  F  F  Y  F  V  I  V  I  I  K  H  I  F  S  E  K  S  F  G  Q  L  E  L  T  S  Q  *  G  E  H  *  A  V  *  I  *  S  D  R  N  F  E  D  M  S  R  *  *  *  F  Q  L  C  H  N  N  A  A  *  V  Q  :  D  T  G  *  E  P  *  K  G  *  S  K  K   : Q  V  I  Q  G  D  Y  S  F  N  C  Q  Y  *  C  C  T  Y  I  I  K  I  F  L  S  F  N  C  E  V  M  *  A  S  L  Y  I  L  C  A  G  G  S  D  L  S  T  N  Y  I  S  L  F  K  C  C  F  Q  K  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107328" stop="107381"/>
                    <exon start="107448" stop="107504"/>
                    <exon start="107690" stop="107926"/>
                    <exon start="108092" stop="108447"/>
                    <exon start="108801" stop="108840"/>
                    <exon start="110891" stop="110896"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLFFQSSHVLNMSPTPLEPVHYNHHSPNSNHTPKFQRNLQSSMELMKEITTLEIEIMRLERYLLSLYRTALPLVLENNQKIKISSPTQCTTHQSYSDVEMDTCADLISAAHALAGEKLTDSAHRSLADHLTASRMDDLLSYPDRLSEEIVKCISCIYCKFANPNILAPKGLSVSSTSSLSSSSTFSPRNLSGSWSSHHNEESTEQYEFEVIEILKICLDDDSFNYATTMLHKFRTLVKSLEKVDPRNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="120667" PGL_stop="119701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120667" e_stop="119701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="120667" e_stop="119701" e_length="967"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120667" stop="119701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTGGATTGACTAAGAATGTCATAAAACCTTATGGATGCTCAGTCTGGAAAGCTATTAGGAATCTTTGGCCAAAGATGCAGATCAGAAATAAGGTGAGGATAGGAAATGGGCAGAAAACCTCTTTTTTTGGCATGACAAGTGGGGCAGGGCTTTTAACAATGAAACAACAACATCCGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGCATCGATATCTAAGGAGATATCTGAATGATTGGGAGATTGGTAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATGGAACAGAAAAAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGTAGCTAAATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAATGTTAACTGTTTCATCTGGCTCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAAAAAAAGGGTCACCAACTAACCGCTGGCTGTTTTTTGTGGGGAACAAGCTGAGACAATCAACCATCTTTTTTTGCACTGCAAATGGACTTTGGAGGATGTTCATCAGTTGGAAGACCAGCTTTGGAGGATGTTCATCAGTTGGAAAGAGATTATTGGGTGAAACCTGGAAGCATTGCAGACGTTCTAAGATGCGGGAATGTGGATGGTAATGTGAGCAAGAAGGAAGAAAAATGGAAGATCGTTTCAGAATGTATTTGGTGGTCAATTTGGATTGAAAGGAACAAAAGGTGCTTTGAGGGGACTCAAAACAACATTCAGAATCTTCAAATGAATTGAATTGTTTAGGCCTTTATTATTTTTGGTGTAAGCAAAAACTACTAGCTCAAACAGAAGATATTTGTGATGTTTTTAACTTTTTGTAAGGCACAA</gDNA_template>
            <first_frame> I  I  G  L  T  K  N  V  I  K  P  Y  G  C  S  V  W  K  A  I  R  N  L  W  P  K  M  Q  I  R  N  K  V  R  I  G  N  G  Q  K  T  S  F  F  G  M  T  S  G  A  G  L  L  T  M  K  Q  Q  H  P  E  L  Y  T  L  S  Q  Q  Q  E  A  T  V  A  M  M  W  T  G  Q  G  W  H  R  Y  L  R  R  Y  L  N  D  W  E  I  G  R  I  T  E  F  Y  N  S  V  A  S  F  N  N  L  T  D  E  V  D  R  L  E  W  N  R  K  S  K  G  I  F  S  V  K  S  A  Y  R  *  L  N  V  E  V  V  K  E  R  D  W  P  W  K  M  I  W  K  P  K  I  P  Y  N  V  N  C  F  I  W  L  W  P  K  K  Q  C  *  L  M  I  T  *  K  K  G  S  P  T  N  R  W  L  F  F  V  G  N  K  L  R  Q  S  T  I  F  F  C  T  A  N  G  L  W  R  M  F  I  S  W  K  T  S  F  G  G  C  S  S  V  G  K  R  L  L  G  E  T  W  K  H  C  R  R  S  K  M  R  E  C  G  W  *  C  E  Q  E  G  R  K  M  E  D  R  F  R  M  Y  L  V  V  N  L  D  *  K  E  Q  K  V  L  *  G  D  S  K  Q  H  S  E  S  S  N  E  L  N  C  L  G  L  Y  Y  F  W  C  K  Q  K  L  L  A  Q  T  E  D  I  C  D  V  F  N  F  L  *  G  T  </first_frame>
            <second_frame>  *  L  D  *  L  R  M  S  *  N  L  M  D  A  Q  S  G  K  L  L  G  I  F  G  Q  R  C  R  S  E  I  R  *  G  *  E  M  G  R  K  P  L  F  L  A  *  Q  V  G  Q  G  F  *  Q  *  N  N  N  I  R  S  Y  T  L  *  A  S  N  K  K  P  Q  L  P  *  C  G  L  D  K  D  G  I  D  I  *  G  D  I  *  M  I  G  R  L  V  G  *  Q  N  S  I  T  Q  *  Q  V  S  T  I  *  L  T  K  W  T  D  *  N  G  T  E  K  V  R  E  F  F  L  S  N  L  H  T  G  S  *  M  *  K  W  *  R  K  E  I  G  L  G  R  *  Y  G  N  Q  K  F  P  T  M  L  T  V  S  S  G  S  G  Q  R  S  S  V  N  S  *  *  P  E  K  K  G  H  Q  L  T  A  G  C  F  L  W  G  T  S  *  D  N  Q  P  S  F  F  A  L  Q  M  D  F  G  G  C  S  S  V  G  R  P  A  L  E  D  V  H  Q  L  E  R  D  Y  W  V  K  P  G  S  I  A  D  V  L  R  C  G  N  V  D  G  N  V  S  K  K  E  E  K  W  K  I  V  S  E  C  I  W  W  S  I  W  I  E  R  N  K  R  C  F  E  G  T  Q  N  N  I  Q  N  L  Q  M  N  *  I  V  *  A  F  I  I  F  G  V  S  K  N  Y  *  L  K  Q  K  I  F  V  M  F  L  T  F  C  K  A  Q </second_frame>
            <third_frame>   N  W  I  D  *  E  C  H  K  T  L  W  M  L  S  L  E  S  Y  *  E  S  L  A  K  D  A  D  Q  K  *  G  E  D  R  K  W  A  E  N  L  F  F  W  H  D  K  W  G  R  A  F  N  N  E  T  T  T  S  G  A  I  H  S  K  P  A  T  R  S  H  S  C  H  D  V  D  W  T  R  M  A  S  I  S  K  E  I  S  E  *  L  G  D  W  *  D  N  R  I  L  *  L  S  S  K  F  Q  Q  S  D  *  R  S  G  Q  T  R  M  E  Q  K  K  *  G  N  F  F  C  Q  I  C  I  Q  V  A  K  C  R  S  G  E  G  K  R  L  A  L  E  D  D  M  E  T  K  N  S  L  Q  C  *  L  F  H  L  A  L  A  K  E  A  V  L  T  H  D  N  L  K  K  R  V  T  N  *  P  L  A  V  F  C  G  E  Q  A  E  T  I  N  H  L  F  L  H  C  K  W  T  L  E  D  V  H  Q  L  E  D  Q  L  W  R  M  F  I  S  W  K  E  I  I  G  *  N  L  E  A  L  Q  T  F  *  D  A  G  M  W  M  V  M  *  A  R  R  K  K  N  G  R  S  F  Q  N  V  F  G  G  Q  F  G  L  K  G  T  K  G  A  L  R  G  L  K  T  T  F  R  I  F  K  *  I  E  L  F  R  P  L  L  F  L  V  *  A  K  T  T  S  S  N  R  R  Y  L  *  C  F  *  L  F  V  R  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120667" stop="120260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIGLTKNVIKPYGCSVWKAIRNLWPKMQIRNKVRIGNGQKTSFFGMTSGAGLLTMKQQHPELYTLSQQQEATVAMMWTGQGWHRYLRRYLNDWEIGRITEFYNSVASFNNLTDEVDRLEWNRKSKGIFSVKSAYR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120078" stop="119794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNQPSFFALQMDFGGCSSVGRPALEDVHQLERDYWVKPGSIADVLRCGNVDGNVSKKEEKWKIVSECIWWSIWIERNKRCFEGTQNNIQNLQMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="123327" PGL_stop="127432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123327" e_stop="123378"/>
            <exon e_start="123739" e_stop="124112"/>
            <exon e_start="124196" e_stop="124290"/>
            <exon e_start="125957" e_stop="126199"/>
            <exon e_start="126393" e_stop="127036"/>
            <exon e_start="127304" e_stop="127432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.266" e_score="0.995"/>
          <exon-intron don_prob="0.873" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.842" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123327" e_stop="123378" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.040">
            <gDNA_intron_boundary i_start="123379" i_stop="123738" i_length="360"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="123739" e_stop="124112" e_length="374"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.266">
            <gDNA_intron_boundary i_start="124113" i_stop="124195" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124196" e_stop="124290" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.873" acc_prob="0.958">
            <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125957" e_stop="126199" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="126393" e_stop="127036" e_length="644"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.842">
            <gDNA_intron_boundary i_start="127037" i_stop="127303" i_length="267"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="127304" e_stop="127432" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123327" stop="123378"/>
              <exon start="123739" stop="124112"/>
              <exon start="124196" stop="124287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124255" stop="124290"/>
              <exon start="125957" stop="126199"/>
              <exon start="126393" stop="127036"/>
              <exon start="127304" stop="127432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGAAATGCTGATGATGCTATTGAAGAATGTAAGTATTTGGAAAGCAAAG : GTCTTCTGGATGTAGAAAGTTTGCAGCTTTATGCGCTTTCTTATTGGAAACTTGGAAAATATGACCTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTATATCATATTTCAGGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATTTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTA : GTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGATAAG : GACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA : GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGATGCAGAAGAGTCTATTGCGCAAGCTTGCTTGTTGGCGGGTGGCGAGAGTTGCCTTTTTCTTAGCCATG : GTGTTATTTGCATGGAGATTGCCAGGCAGCAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGGCAC</gDNA_template>
            <first_frame> A  G  N  A  D  D  A  I  E  E  C  K  Y  L  E  S  K   : G  L  L  D  V  E  S  L  Q  L  Y  A  L  S  Y  W  K  L  G  K  Y  D  L  A  L  S  M  A  K  R  L  A  S  S  A  L  P  T  E  H  P  L  A  A  A  S  V  S  F  I  C  R  L  V  Y  H  I  S  G  K  E  L  A  I  R  N  I  L  Q  L  P  K  R  A  F  Q  S  S  R  V  R  L  V  A  F  A  I  H  A  L  D  E  S  H  Q  L  D  S  V  V  S  C  V  R  E  S  L  S  S  N  K  E  I  A  A  L  D  F  L  A  T  L  G  L  L  :  V  K  H  G  S  K  D  C  L  E  V  Q  K  G  V  N  Y  L  R  R  A  L  H  T  S  P  N  S  H  L  I  R :   T  L  L  G  Y  L  L  V  S  S  R  E  W  K  D  V  H  I  S  A  R  C  F  R  V  D  P  S  E  H  Q  K  K  E  G  V  K  S  S  V  Q  I  F  G  A  G  A  V  A  C  C  N  V  G  S  G  K  K  T  L  A  M  S  I  C  R  E  N  S  T  L  E  C  K  T  I  K  L  L  Q  K :   C  V  H  Q  E  P  W  D  H  H  S  Y  Y  L  L  V  L  N  Y  L  Q  K  A  R  E  K  K  F  P  R  N  L  C  V  V  L  E  R  L  I  N  V  A  L  R  S  E  L  Y  A  K  D  D  I  S  S  Q  Y  Q  K  F  Q  L  L  L  C  A  A  E  V  S  L  H  G  G  N  N  F  K  C  I  M  H  A  K  S  T  L  E  M  Q  L  P  D  N  Y  L  F  F  A  H  L  L  L  C  R  A  Y  A  V  E  D  N  Y  S  G  L  H  E  E  Y  I  R  C  L  Q  L  K  T  D  N  H  I  G  W  I  C  L  K  F  L  E  S  R  Y  K  L  Q  S  D  S  S  S  L  A  L  A  F  Q  E  C  G  K  E  I  K  T  S  W  N  M  W  I  A  M  Y  N  L  V  Q  G  L  T  A  A  W  N  G  E  F  I  D  A  E  E  S  I  A  Q  A  C  L  L  A  G  G  E  S  C  L  F  L  S  H   : G  V  I  C  M  E  I  A  R  Q  Q  S  D  S  D  F  L  S  L  A  I  R  S  L  K  K  A  K  D  S  S  S  T  P  L  P  F  V  S  L  L  L  A  </first_frame>
            <second_frame>  Q  E  M  L  M  M  L  L  K  N  V  S  I  W  K  A  K  :  V  F  W  M  *  K  V  C  S  F  M  R  F  L  I  G  N  L  E  N  M  T  L  L  F  L  W  Q  R  D  W  P  H  L  L  Y  Q  R  S  I  H  W  L  L  P  P  S  V  S  S  V  D  *  Y  I  I  F  Q  G  R  N  *  L  *  E  T  Y  Y  N  C  Q  K  E  P  S  R  V  Q  E  L  G  L  *  H  L  L  F  M  H  *  M  K  V  I  S  L  T  Q  L  F  H  V  F  V  S  L  F  H  L  T  K  R  L  L  R  W  I  S  W  P  H  W  A  Y  * :   S  N  M  D  L  R  T  A  *  K  F  R  R  G  S  I  I  *  E  E  L  F  I  L  L  Q  T  V  I  *  *   : G  P  F  L  A  I  C  *  Y  P  A  G  N  G  K  M  F  T  F  Q  L  D  A  S  E  W  I  L  L  N  I  R  K  R  K  V  L  N  P  V  F  R  F  L  V  L  E  Q  L  L  A  V  M  W  G  A  A  R  R  H  *  Q  C  P  S  V  E  K  I  Q  H  W  S  A  K  R  S  S  C  C  R   : S  V  S  I  R  S  L  G  T  I  I  H  I  T  S  L  Y  *  I  I  F  R  R  R  G  R  R  N  F  L  V  T  C  V  L  F  L  R  G  *  *  M  W  L  F  E  V  S  F  M  Q  K  M  I  F  L  P  S  T  K  S  S  S  F  C  F  V  P  R  R  L  V  C  M  V  G  I  I  S  S  A  L  C  M  Q  K  V  L  *  R  C  S  F  Q  I  T  T  S  S  L  H  T  C  Y  Y  V  V  P  M  L  *  K  I  I  I  Q  D  F  M  K  N  T  *  G  A  C  S  *  K  L  I  I  I  L  V  G  F  V  L  S  F  L  K  V  D  T  S  C  S  Q  I  P  V  H  *  P  W  P  F  K  S  V  A  K  K  *  K  L  R  G  T  C  G  L  L  C  I  I  W  F  K  V  *  L  Q  L  G  M  G  N  L  L  M  Q  K  S  L  L  R  K  L  A  C  W  R  V  A  R  V  A  F  F  L  A  M  :  V  L  F  A  W  R  L  P  G  S  S  P  I  Q  I  F  Y  H  L  L  L  E  V  *  R  K  Q  K  T  V  L  Q  R  H  Y  P  L  S  H  C  Y  W  H </second_frame>
            <third_frame>   R  K  C  *  *  C  Y  *  R  M  *  V  F  G  K  Q  R :   S  S  G  C  R  K  F  A  A  L  C  A  F  L  L  E  T  W  K  I  *  P  C  S  F  Y  G  K  E  T  G  L  I  C  F  T  N  G  A  S  I  G  C  C  L  R  Q  F  H  L  *  I  S  I  S  Y  F  R  E  G  I  S  Y  K  K  H  I  T  T  A  K  K  S  L  P  E  F  K  S  *  A  C  S  I  C  Y  S  C  I  R  *  K  S  S  A  *  L  S  C  F  M  C  S  *  V  S  F  I  *  Q  R  D  C  C  A  G  F  P  G  H  T  G  L  T   : S  Q  T  W  I  *  G  L  P  R  S  S  E  G  G  Q  L  S  K  K  S  S  S  Y  F  S  K  Q  S  F  D  K  :  D  P  S  W  L  S  V  S  I  Q  Q  G  M  E  R  C  S  H  F  S  S  M  L  Q  S  G  S  F  *  T  S  E  K  G  R  C  *  I  Q  C  S  D  F  W  C  W  S  S  C  L  L  *  C  G  E  R  Q  E  D  T  S  N  V  H  L  *  R  K  F  N  T  G  V  Q  N  D  Q  A  A  A  E  :  V  C  P  S  G  A  L  G  P  S  F  I  L  P  P  C  T  K  L  S  S  E  G  A  G  E  E  I  S  S  *  P  V  C  C  S  *  E  V  D  K  C  G  S  S  K  *  A  L  C  K  R  *  Y  F  F  P  V  P  K  V  P  A  S  A  L  C  R  G  G  *  F  A  W  W  E  *  F  Q  V  H  Y  A  C  K  K  Y  S  R  D  A  A  S  R  *  L  P  L  L  C  T  L  A  T  M  S  C  L  C  C  R  R  *  L  F  R  T  S  *  R  I  H  K  V  L  A  A  K  N  *  *  S  Y  W  L  D  L  S  *  V  S  *  K  S  I  Q  A  A  V  R  F  Q  F  T  S  L  G  L  S  R  V  W  Q  R  N  K  N  F  V  E  H  V  D  C  Y  V  *  F  G  S  R  S  N  C  S  L  E  W  G  I  Y  *  C  R  R  V  Y  C  A  S  L  L  V  G  G  W  R  E  L  P  F  S  *  P  W :   C  Y  L  H  G  D  C  Q  A  A  V  R  F  R  F  F  I  T  C  Y  *  K  S  E  E  S  K  R  Q  F  F  N  A  T  T  L  C  L  T  A  T  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123327" stop="123378"/>
                    <exon start="123739" stop="124112"/>
                    <exon start="124196" stop="124290"/>
                    <exon start="125957" stop="126199"/>
                    <exon start="126393" stop="127036"/>
                    <exon start="127304" stop="127431"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1536</number_coding_nucleotides>
                  <number_encoded_amino_acids>512</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGNADDAIEECKYLESKGLLDVESLQLYALSYWKLGKYDLALSMAKRLASSALPTEHPLAAASVSFICRLVYHISGKELAIRNILQLPKRAFQSSRVRLVAFAIHALDESHQLDSVVSCVRESLSSNKEIAALDFLATLGLLVKHGSKDCLEVQKGVNYLRRALHTSPNSHLIRTLLGYLLVSSREWKDVHISARCFRVDPSEHQKKEGVKSSVQIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKLLQKCVHQEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDDISSQYQKFQLLLCAAEVSLHGGNNFKCIMHAKSTLEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIRCLQLKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLTAAWNGEFIDAEESIAQACLLAGGESCLFLSHGVICMEIARQQSDSDFLSLAIRSLKKAKDSSSTPLPFVSLLLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 59128 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 2038 bytes was the average size of a spliced alignment
$ 33664 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1530 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 21:53:06
-->
