SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 4708 19.1 3.8 1.4 C04HBa0311A10.1 529 1569 (143119) C Copia00005 Copia (247) 4644 3580 1 425 15.1 0.0 0.0 C04HBa0311A10.1 1568 1640 (143048) C Copia00168 Copia (1565) 3091 3019 2 * 52180 9.2 1.2 0.3 C04HBa0311A10.1 2819 11139 (133549) + Gypsy00002 Gypsy 1 11846 (3) 3 253 23.6 7.1 5.4 C04HBa0311A10.1 11807 11918 (132770) C Copia00112 Copia (3369) 5518 5405 4 1319 14.5 1.9 0.6 C04HBa0311A10.1 12095 12513 (132175) C Copia00176 Copia (716) 2419 1963 5 4382 19.0 3.5 1.0 C04HBa0311A10.1 12546 13520 (131168) C Copia00005 Copia (2753) 2138 1140 6 1256 17.9 0.4 0.4 C04HBa0311A10.1 13519 13771 (130917) C SONATA2 Unknown (0) 253 1 7 * 1174 21.8 1.1 1.1 C04HBa0311A10.1 13767 14035 (130653) C Copia00005 Copia (3745) 1146 878 6 * 731 17.7 0.8 0.0 C04HBa0311A10.1 14103 14232 (130456) C Copia00005 Copia (4175) 716 586 6 * 1481 19.0 4.8 0.0 C04HBa0311A10.1 14226 14557 (130131) C Copia00176 Copia (2657) 478 131 8 2060 19.2 4.1 1.1 C04HBa0311A10.1 14661 15128 (129560) + Copia00089 Copia 533 1014 (10442) 9 1672 22.7 5.7 2.8 C04HBa0311A10.1 15129 15193 (129495) + Gypsy00077 Gypsy 5316 5786 (327) 10 2153 15.8 2.4 4.5 C04HBa0311A10.1 15202 15706 (128982) + Gypsy00155 Gypsy 5583 6076 (573) 11 * 11231 16.9 4.1 4.1 C04HBa0311A10.1 15706 18123 (126565) C Copia00089 Copia (8464) 2992 574 12 1848 23.2 5.3 0.6 C04HBa0311A10.1 18156 18623 (126065) + Copia00089 Copia 1734 2223 (9233) 13 298 22.7 3.3 1.4 C04HBa0311A10.1 18610 18706 (125982) + Unknown00002 Unknown 4159 9269 (712) 14 * 544 22.6 0.6 3.1 C04HBa0311A10.1 18679 18838 (125850) C Unknown00052 Unknown (1517) 3152 2997 15 * 14448 22.1 4.5 3.7 C04HBa0311A10.1 18832 23118 (121570) C Unknown00056 Unknown (167) 4942 623 16 4942 18.4 2.9 4.0 C04HBa0311A10.1 23128 24381 (120307) C Unknown00054 Unknown (77) 5414 4175 17 1537 17.8 0.7 0.0 C04HBa0311A10.1 24385 24693 (119995) C Unknown00029 Unknown (1591) 4118 3808 18 1771 18.4 0.6 0.8 C04HBa0311A10.1 24700 25050 (119638) + Copia00089 Copia 2643 2992 (8464) 19 575 14.3 2.3 7.0 C04HBa0311A10.1 25788 25915 (118773) C Copia00094 Copia (1021) 4588 4467 20 * 1752 15.4 2.3 0.7 C04HBa0311A10.1 25820 26120 (118568) + Unknown00034 Unknown 3705 4010 (5067) 21 292 21.2 12.0 3.5 C04HBa0311A10.1 28935 29076 (115612) C SONATA2 Unknown (27) 226 73 22 1486 29.5 1.5 5.3 C04HBa0311A10.1 37595 38271 (106417) C Copia00172 Copia (1785) 4842 4192 23 2680 15.0 2.5 4.4 C04HBa0311A10.1 39170 39761 (104927) + Unknown00054 Unknown 4175 4755 (736) 24 4954 23.0 2.9 4.4 C04HBa0311A10.1 39847 42336 (102352) + Unknown00056 Unknown 720 4984 (52) 25 2307 23.4 1.9 1.9 C04HBa0311A10.1 42552 43139 (101549) + Unknown00056 Unknown 2514 3101 (2008) 26 4375 31.2 4.3 3.7 C04HBa0311A10.1 44153 46442 (98246) C Gypsy00208 Gypsy (5339) 2716 414 27 251 38.8 0.5 0.5 C04HBa0311A10.1 46548 46736 (97952) C Gypsy00198 Gypsy (7532) 712 524 28 1188 15.8 5.4 0.0 C04HBa0311A10.1 47147 47386 (97302) C SONATA2 Unknown (0) 253 1 29 503 18.5 10.6 1.5 C04HBa0311A10.1 50266 50397 (94291) + TONT2-I_PV Unknown 4001 4144 (526) 30 796 23.5 5.5 2.8 C04HBa0311A10.1 51953 52240 (92448) + Gypsy00179 Gypsy 5040 5485 (321) 31 689 25.8 4.2 4.2 C04HBa0311A10.1 52031 52269 (92419) C Gypsy00063 Gypsy (1009) 9917 9679 32 * 283 20.2 3.3 6.7 C04HBa0311A10.1 53276 53365 (91323) C Gypsy00063 Gypsy (3921) 7005 6919 33 246 23.4 2.5 3.8 C04HBa0311A10.1 53302 53381 (91307) + Gypsy00026 Gypsy 6311 6389 (354) 34 * 351 24.8 3.6 4.3 C04HBa0311A10.1 53777 53915 (90773) C Copia00172 Copia (2152) 4475 4338 35 1388 24.3 6.1 2.7 C04HBa0311A10.1 54090 54567 (90121) + Gypsy00203 Gypsy 5145 5638 (1876) 36 * 4563 23.2 3.3 2.1 C04HBa0311A10.1 54352 55696 (88992) C Gypsy00006 Gypsy (488) 6186 336 37 246 4.9 0.0 0.0 C04HBa0311A10.1 55886 55946 (88742) C Gypsy00071 Gypsy (8579) 4132 4072 38 4559 25.6 3.8 1.4 C04HBa0311A10.1 56338 58776 (85912) C Gypsy00006 Gypsy (0) 7779 1150 39 2396 26.7 2.5 0.9 C04HBa0311A10.1 58780 59447 (85241) C Gypsy00006 Gypsy (2708) 5071 4393 40 2037 27.5 1.6 1.9 C04HBa0311A10.1 59438 60019 (84669) C Gypsy00006 Gypsy (3967) 3812 3233 40 * 864 24.9 4.8 3.7 C04HBa0311A10.1 60036 60306 (84382) C Gypsy00006 Gypsy (4931) 2848 2575 40 * 5974 23.8 6.6 5.1 C04HBa0311A10.1 60303 62532 (82156) C Copia00089 Copia (8460) 2996 733 41 2761 24.9 2.0 1.9 C04HBa0311A10.1 62575 63330 (81358) C Copia00089 Copia (10699) 757 1 41 * 15179 23.8 3.7 4.1 C04HBa0311A10.1 62718 68061 (76627) C Gypsy00155 Gypsy (775) 5338 109 42 6410 23.4 4.9 6.5 C04HBa0311A10.1 67618 69965 (74723) C Copia00089 Copia (8464) 2992 681 43 * 3226 31.3 4.3 4.2 C04HBa0311A10.1 70671 73538 (71150) + Unknown00051 Unknown 1242 4110 (1346) 44 291 27.3 11.9 8.0 C04HBa0311A10.1 74025 74410 (70278) + Unknown00051 Unknown 4599 4999 (457) 44 693 21.6 0.6 4.7 C04HBa0311A10.1 74577 74746 (69942) C Copia00089 Copia (10762) 694 532 45 1095 21.5 5.7 4.0 C04HBa0311A10.1 74760 75108 (69580) + Gypsy00203 Gypsy 5095 5449 (2065) 46 1037 19.4 2.8 2.1 C04HBa0311A10.1 75102 75390 (69298) + POTTEN1 Unknown 3 293 (816) 47 * 788 18.4 1.2 1.2 C04HBa0311A10.1 75407 75571 (69117) + Gypsy00073 Gypsy 695 859 (11225) 48 975 19.8 1.0 5.3 C04HBa0311A10.1 76600 76898 (67790) + POTTEN1 Unknown 824 1109 (0) 47 3672 24.2 7.2 2.7 C04HBa0311A10.1 76900 78017 (66671) C Gypsy00006 Gypsy (5541) 2238 1071 49 252 25.7 1.0 1.9 C04HBa0311A10.1 78052 78154 (66534) + Gypsy00165 Gypsy 6990 7091 (7) 50 225 21.8 5.1 0.0 C04HBa0311A10.1 79430 79507 (65181) C Copia00172 Copia (1552) 5075 4994 51 656 28.7 4.2 2.9 C04HBa0311A10.1 79922 80301 (64387) C Copia00172 Copia (2041) 4586 4202 51 5906 16.2 1.4 4.5 C04HBa0311A10.1 80312 82578 (62110) C Unknown00002 Unknown (6581) 3400 279 52 15216 15.8 1.6 2.0 C04HBa0311A10.1 82579 85540 (59148) + Unknown00025 Unknown 2311 5262 (1046) 53 8563 17.7 1.5 2.5 C04HBa0311A10.1 84097 85938 (58750) C Gypsy00115 Gypsy (10) 7973 6151 54 * 1758 23.9 1.3 2.5 C04HBa0311A10.1 85930 86483 (58205) + Unknown00016 Unknown 1187 1733 (3248) 55 * 2868 16.8 2.0 1.5 C04HBa0311A10.1 86541 87227 (57461) C Unknown00002 Unknown (61) 9920 9184 56 3424 17.3 3.1 1.9 C04HBa0311A10.1 88050 88822 (55866) + GYLES1_LTR Unknown 1 782 (3) 57 * 44783 0.0 0.0 0.0 C04HBa0311A10.1 88452 93414 (51274) + Gypsy00157 Gypsy 1 4963 (0) 58 3404 16.9 3.9 1.8 C04HBa0311A10.1 93302 94070 (50618) + GYLES1_LTR Unknown 1 785 (0) 59 * 6968 18.0 1.5 1.1 C04HBa0311A10.1 95816 97269 (47419) + Gypsy00080 Gypsy 1292 2751 (7195) 60 751 9.8 2.2 2.2 C04HBa0311A10.1 97273 97408 (47280) + Gypsy00046 Gypsy 1317 1452 (9619) 61 * 22579 17.4 1.4 1.1 C04HBa0311A10.1 97406 101706 (42982) + Gypsy00202 Gypsy 8874 13186 (1249) 62 13067 19.9 4.0 3.5 C04HBa0311A10.1 101709 106064 (38624) + Gypsy00123 Gypsy 1 6673 (1007) 63 * 18297 16.6 1.4 1.9 C04HBa0311A10.1 104102 108765 (35923) C Gypsy00114 Gypsy (0) 7942 4198 64 8746 12.0 0.0 0.6 C04HBa0311A10.1 107768 109064 (35624) + Gypsy00112 Gypsy 1914 3202 (4478) 65 * 9576 17.7 2.7 2.4 C04HBa0311A10.1 109084 111494 (33194) + Gypsy00115 Gypsy 5358 7968 (0) 66 * 13094 16.8 1.9 2.3 C04HBa0311A10.1 110043 112672 (32016) C Unknown00025 Unknown (1046) 5262 2645 67 972 22.7 10.2 6.9 C04HBa0311A10.1 113084 113604 (31084) + LHI1 Unknown 1 538 (378) 68 * 1555 10.1 5.0 0.0 C04HBa0311A10.1 113595 113832 (30856) + Unknown00034 Unknown 3689 3938 (5139) 69 451 27.3 4.6 4.6 C04HBa0311A10.1 114059 114296 (30392) + LHI1 Unknown 652 889 (27) 68 710 20.9 0.0 0.6 C04HBa0311A10.1 115488 115665 (29023) + Gypsy00073 Gypsy 1567 1743 (10341) 70 286 18.4 0.0 4.4 C04HBa0311A10.1 115681 115771 (28917) + Gypsy00073 Gypsy 1656 1742 (10342) 71 6173 22.2 5.0 4.1 C04HBa0311A10.1 122680 124493 (20195) C Copia00089 Copia (8463) 2993 1165 72 5454 24.1 4.9 6.1 C04HBa0311A10.1 122714 124950 (19738) + Gypsy00046 Gypsy 2321 4531 (6540) 73 * 3536 25.0 5.5 8.1 C04HBa0311A10.1 123355 125200 (19488) C Gypsy00155 Gypsy (10) 6639 4841 74 * 249 2.9 0.0 0.0 C04HBa0311A10.1 125232 125266 (19422) + Gypsy00203 Gypsy 5732 5766 (1748) 75 307 20.5 3.4 5.7 C04HBa0311A10.1 126100 126187 (18501) C TS Unknown (18) 143 58 76 882 28.3 5.0 1.8 C04HBa0311A10.1 126385 126766 (17922) C TS2 Unknown (259) 396 3 77 4231 7.2 3.7 0.2 C04HBa0311A10.1 128136 128708 (15980) + Unknown00045 Unknown 3925 4517 (7) 78 3288 23.9 6.8 4.8 C04HBa0311A10.1 128138 129443 (15245) + Gypsy00033 Gypsy 5071 6402 (4593) 79 * 41021 0.0 0.0 0.0 C04HBa0311A10.1 129276 133799 (10889) + Unknown00045 Unknown 1 4524 (0) 80 3297 23.7 5.7 5.1 C04HBa0311A10.1 133202 134526 (10162) + Gypsy00033 Gypsy 5071 6402 (4593) 81 * 11176 9.3 1.8 0.4 C04HBa0311A10.1 134365 135997 (8691) + Unknown00045 Unknown 7 1662 (2862) 82 7696 16.4 5.2 2.0 C04HBa0311A10.1 134599 136165 (8523) + Gypsy00033 Gypsy 6544 8160 (2835) 81 * 393 25.3 2.2 1.1 C04HBa0311A10.1 144421 144512 (176) + Copia00089 Copia 532 624 (10832) 83 241 27.2 7.4 9.7 C04HBa0311A10.1 144513 144586 (102) + Gypsy00155 Gypsy 4858 5006 (1643) 84