SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 522 24.9 12.6 9.9 C04SLm0063I03.1 6 630 (82895) C Copia00089 Copia (9958) 1498 857 1 409 28.1 4.5 5.0 C04SLm0063I03.1 520 721 (82804) + Gypsy00046 Gypsy 4329 4529 (6542) 2 * 418 26.0 10.0 3.5 C04SLm0063I03.1 995 1225 (82300) C Copia00089 Copia (10014) 1442 1197 3 225 27.4 0.0 5.2 C04SLm0063I03.1 1290 1366 (82159) + Unknown00029 Unknown 5337 5409 (300) 4 * 408 28.4 7.9 10.0 C04SLm0063I03.1 1310 1790 (81735) C Copia00089 Copia (10453) 1003 533 3 3027 27.2 4.8 7.3 C04SLm0063I03.1 2779 4578 (78947) C Gypsy00060 Gypsy (41) 5700 3946 5 1408 25.6 7.7 0.5 C04SLm0063I03.1 4551 4954 (78571) C Gypsy00060 Gypsy (1953) 3788 3356 5 * 587 27.4 5.7 2.9 C04SLm0063I03.1 4949 5192 (78333) C Gypsy00194 Gypsy (6447) 2659 2409 6 * 1271 29.6 5.3 5.6 C04SLm0063I03.1 5192 5355 (78170) + Gypsy00208 Gypsy 5238 6296 (1759) 7 1586 27.1 4.8 4.8 C04SLm0063I03.1 5356 6253 (77272) C Copia00153 Copia (1521) 5868 4971 8 270 25.8 4.8 8.3 C04SLm0063I03.1 7534 7761 (75764) + Unknown00016 Unknown 2138 2357 (2624) 9 * 478 20.6 2.3 2.3 C04SLm0063I03.1 7653 7781 (75744) + Gypsy00042 Gypsy 205 333 (7165) 10 331 25.0 1.2 1.2 C04SLm0063I03.1 8521 8601 (74924) C Gypsy00011 Gypsy (3056) 4956 4876 11 * 2503 19.3 2.2 5.3 C04SLm0063I03.1 8591 9349 (74176) + Copia00145 Copia 4 739 (11680) 12 22691 16.0 10.7 5.2 C04SLm0063I03.1 10882 16344 (67181) + Copia00145 Copia 6632 12394 (25) 13 429 25.5 3.3 3.3 C04SLm0063I03.1 16542 16691 (66834) C Gypsy00011 Gypsy (2969) 5043 4894 14 2658 18.1 3.4 3.9 C04SLm0063I03.1 16694 17433 (66092) + Copia00145 Copia 4 739 (11680) 15 835 15.8 3.0 3.4 C04SLm0063I03.1 19030 19292 (64233) + Copia00145 Copia 6723 6984 (5435) 16 399 24.4 0.8 2.2 C04SLm0063I03.1 20400 20533 (62992) C Copia00112 Copia (8741) 146 15 17 * 603 12.3 1.7 4.2 C04SLm0063I03.1 20417 20535 (62990) C Unknown00046 Unknown (9551) 493 378 18 552 15.4 2.4 0.8 C04SLm0063I03.1 20913 21036 (62489) + Gypsy00163 Gypsy 8061 8186 (561) 19 1274 22.6 1.5 1.2 C04SLm0063I03.1 21964 22290 (61235) C Gypsy00086 Gypsy (7153) 330 3 20 2009 20.6 0.7 0.2 C04SLm0063I03.1 27432 27860 (55665) C Gypsy00063 Gypsy (1155) 9771 9341 21 * 2811 21.4 1.2 1.4 C04SLm0063I03.1 27855 28498 (55027) + Copia00153 Copia 5527 6169 (1220) 22 * 27848 19.0 2.3 1.3 C04SLm0063I03.1 28048 33625 (49900) C Gypsy00181 Gypsy (0) 6710 1077 23 4120 19.6 1.3 1.1 C04SLm0063I03.1 33626 34530 (48995) + Gypsy00172 Gypsy 4836 5742 (171) 24 1869 34.4 2.6 1.4 C04SLm0063I03.1 37090 38190 (45335) C Gypsy00155 Gypsy (3794) 2855 1742 25 1480 32.7 2.8 0.8 C04SLm0063I03.1 37582 38290 (45235) + Gypsy00071 Gypsy 665 1387 (11324) 26 * 882 26.3 0.0 0.0 C04SLm0063I03.1 38328 38532 (44993) + Gypsy00187 Gypsy 3738 3942 (1922) 27 653 28.8 2.2 1.3 C04SLm0063I03.1 38348 38572 (44953) C Gypsy00059 Gypsy (4542) 3919 3693 28 * 1725 15.1 3.1 0.0 C04SLm0063I03.1 38556 38874 (44651) C Gypsy00059 Gypsy (5414) 3047 2719 28 1422 15.8 3.8 4.1 C04SLm0063I03.1 38897 39212 (44313) C Gypsy00162 Gypsy (6301) 1531 1217 29 807 25.2 9.9 4.3 C04SLm0063I03.1 38931 39352 (44173) + Unknown00031 Unknown 3729 4174 (937) 30 * 2714 20.1 2.9 3.0 C04SLm0063I03.1 39540 40241 (43284) C Gypsy00059 Gypsy (6700) 1761 1061 28 * 9058 20.5 6.3 4.7 C04SLm0063I03.1 39836 42453 (41072) + Gypsy00123 Gypsy 232 2890 (4857) 31 1479 28.9 2.2 1.5 C04SLm0063I03.1 42455 42998 (40527) C Gypsy00155 Gypsy (5451) 1198 651 32 255 25.0 0.0 0.0 C04SLm0063I03.1 44281 44356 (39169) + Gypsy00071 Gypsy 3336 3411 (9300) 33 * 389 28.2 0.0 3.1 C04SLm0063I03.1 44300 44427 (39098) C Copia00151 Copia (8289) 2472 2349 34 516 24.9 12.1 9.5 C04SLm0063I03.1 45475 46104 (37421) C Copia00089 Copia (9958) 1498 853 35 240 31.4 4.7 4.7 C04SLm0063I03.1 45990 46200 (37325) C Gypsy00077 Gypsy (421) 5692 5482 36 * 323 29.8 7.4 5.2 C04SLm0063I03.1 46460 46689 (36836) + Gypsy00046 Gypsy 3813 4047 (7024) 37 250 27.7 8.9 11.0 C04SLm0063I03.1 46777 47258 (36267) C Copia00089 Copia (10453) 1003 532 38 236 21.8 0.0 1.8 C04SLm0063I03.1 48173 48228 (35297) + Copia00172 Copia 4085 4139 (2488) 39 * 1284 30.2 3.8 5.8 C04SLm0063I03.1 48200 49177 (34348) + Gypsy00063 Gypsy 2490 3447 (7479) 40 361 22.6 4.7 4.1 C04SLm0063I03.1 49404 49574 (33951) C Gypsy00179 Gypsy (27) 5779 5608 41 683 24.9 2.8 0.6 C04SLm0063I03.1 49617 49794 (33731) C Gypsy00179 Gypsy (330) 5476 5295 41 656 22.4 5.8 5.0 C04SLm0063I03.1 49781 50057 (33468) C Gypsy00172 Gypsy (107) 5806 5528 42 * 322 26.1 3.3 1.6 C04SLm0063I03.1 51447 51567 (31958) C Unknown00002 Unknown (5476) 4505 4383 43 319 26.3 3.5 3.5 C04SLm0063I03.1 51568 51588 (31937) C Gypsy00197 Gypsy (504) 8437 8296 44 2641 19.1 1.7 4.9 C04SLm0063I03.1 52391 53148 (30377) + Copia00145 Copia 6 739 (11680) 45 21127 15.9 12.6 5.3 C04SLm0063I03.1 54577 59999 (23526) + Copia00145 Copia 6632 12394 (25) 46 432 18.8 1.2 1.2 C04SLm0063I03.1 60284 60364 (23161) C Gypsy00011 Gypsy (3056) 4956 4876 47 * 2549 17.6 5.2 4.8 C04SLm0063I03.1 60354 61104 (22421) + Copia00145 Copia 4 757 (11662) 48 787 17.5 8.0 5.3 C04SLm0063I03.1 62607 62944 (20581) + Copia00145 Copia 6638 6984 (5435) 49 625 10.8 4.0 4.0 C04SLm0063I03.1 64060 64184 (19341) C Unknown00046 Unknown (9540) 504 380 50 449 18.9 0.0 0.0 C04SLm0063I03.1 64208 64297 (19228) + Gypsy00163 Gypsy 7832 7921 (826) 51 556 13.8 4.0 9.1 C04SLm0063I03.1 64514 64689 (18836) + Gypsy00163 Gypsy 8020 8186 (561) 51 1417 20.7 1.2 0.9 C04SLm0063I03.1 65592 65918 (17607) C Gypsy00086 Gypsy (7153) 330 3 52 241 2.8 1.4 0.0 C04SLm0063I03.1 67914 67984 (15541) C GYCUME1_LTR Unknown (2200) 446 375 53 * 302 0.0 1.5 0.0 C04SLm0063I03.1 67924 67989 (15536) + Copia00105 Copia 7471 7537 (1320) 54 252 16.4 4.0 6.5 C04SLm0063I03.1 67930 68053 (15472) + MUDSOLT1 Unknown 463 583 (3759) 55 * 241 20.0 2.3 7.0 C04SLm0063I03.1 68560 68645 (14880) + SIMPLEHAT2 Unknown 1127 1208 (0) 56 2083 19.0 1.2 0.5 C04SLm0063I03.1 71152 71579 (11946) C Gypsy00063 Gypsy (1147) 9779 9349 57 950 22.6 1.0 0.0 C04SLm0063I03.1 71581 71784 (11741) C Gypsy00063 Gypsy (8056) 2870 2665 58 * 30980 19.7 3.2 2.1 C04SLm0063I03.1 71782 77336 (6189) C Gypsy00181 Gypsy (100) 6610 492 59 7529 20.3 1.0 1.2 C04SLm0063I03.1 77337 78989 (4536) + Copia00153 Copia 4362 6010 (1379) 60 30980 19.7 3.2 2.1 C04SLm0063I03.1 78990 79433 (4092) C Gypsy00181 Gypsy (6219) 491 3 59 2178 32.2 5.3 2.1 C04SLm0063I03.1 80853 82073 (1452) C Gypsy00155 Gypsy (3657) 2992 1733 61 1698 29.8 3.6 2.8 C04SLm0063I03.1 81454 82170 (1355) + Gypsy00071 Gypsy 665 1387 (11324) 62 * 809 27.0 5.6 0.0 C04SLm0063I03.1 82208 82440 (1085) + Gypsy00090 Gypsy 3597 3842 (1730) 63 * 5181 13.8 2.5 1.9 C04SLm0063I03.1 82437 83411 (114) C Gypsy00162 Gypsy (5636) 2196 1217 64 2709 22.0 6.8 7.8 C04SLm0063I03.1 83412 83525 (0) + Unknown00031 Unknown 3072 4149 (962) 65