SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 306 3.6 1.2 1.2 C04HBa0050I18.1 1424 1510 (112131) + HELITRON7_OS Unknown 1609 3772 (2801) 1 297 3.3 1.0 6.2 C04HBa0050I18.1 1433 1528 (112113) C Gypsy00046 Gypsy (6902) 4169 4079 2 * 1075 10.9 0.0 0.0 C04HBa0050I18.1 4717 4863 (108778) + Copia00143 Copia 77 223 (5081) 3 727 6.0 0.0 2.0 C04HBa0050I18.1 4901 5002 (108639) + Copia00143 Copia 38 137 (5167) 4 967 17.0 0.9 6.1 C04HBa0050I18.1 5928 6140 (107501) + Copia00039 Copia 264 465 (4085) 5 751 17.7 7.3 0.6 C04HBa0050I18.1 6528 6692 (106949) C Copia00039 Copia (4114) 436 261 6 758 20.1 3.3 6.1 C04HBa0050I18.1 12289 12500 (101141) + Unknown00046 Unknown 1860 2065 (7979) 7 547 11.9 1.9 2.9 C04HBa0050I18.1 13740 13843 (99798) C SINE_SO Unknown (86) 103 1 8 1375 21.8 0.5 4.6 C04HBa0050I18.1 19427 19816 (93825) C Unknown00020 Unknown (4805) 400 27 9 295 28.9 3.1 6.3 C04HBa0050I18.1 19763 19921 (93720) + Unknown00033 Unknown 9 162 (4455) 10 * 527 16.2 0.0 1.0 C04HBa0050I18.1 29974 30073 (83568) + Copia00151 Copia 5506 5604 (5157) 11 3704 12.1 5.6 0.2 C04HBa0050I18.1 31418 32029 (81612) + Gypsy00080 Gypsy 7296 7940 (2006) 12 2604 5.5 1.3 0.8 C04HBa0050I18.1 34431 34811 (78830) C Gypsy00073 Gypsy (11698) 386 4 13 1224 13.6 0.5 0.5 C04HBa0050I18.1 34985 35183 (78458) C Gypsy00073 Gypsy (2) 12082 11884 14 839 20.9 2.7 0.6 C04HBa0050I18.1 36110 36292 (77349) C Unknown00046 Unknown (7989) 2055 1869 15 246 17.8 8.4 10.1 C04HBa0050I18.1 36397 36515 (77126) C Unknown00043 Unknown (10783) 541 425 16 601 10.8 6.9 0.0 C04HBa0050I18.1 38866 38967 (74674) C Unknown00034 Unknown (5265) 3812 3704 17 572 16.1 4.0 5.9 C04HBa0050I18.1 38968 39017 (74624) + Copia00112 Copia 27 175 (8712) 18 727 31.1 2.2 4.2 C04HBa0050I18.1 42825 43271 (70370) C Copia00105 Copia (5654) 3203 2766 19 259 31.4 10.4 4.6 C04HBa0050I18.1 42954 43347 (70294) + ATCOPIA2I Unknown 1082 1498 (2998) 20 * 366 15.5 16.3 1.0 C04HBa0050I18.1 43909 44006 (69635) C Unknown00049 Unknown (8237) 794 682 21 920 22.8 1.4 2.7 C04HBa0050I18.1 44982 45318 (68323) C TS2 Unknown (192) 2963 14 22 256 5.7 4.4 2.2 C04HBa0050I18.1 45666 45755 (67886) + GYCUME1_LTR Unknown 385 1592 (2179) 23 310 32.1 1.4 0.7 C04HBa0050I18.1 46061 46198 (67443) C Unknown00050 Unknown (1766) 3865 3727 24 493 18.5 6.6 1.6 C04HBa0050I18.1 46642 46762 (66879) C Unknown00050 Unknown (2042) 3589 3463 25 235 18.3 1.6 4.8 C04HBa0050I18.1 51812 51874 (61767) + Copia00151 Copia 9443 9503 (1258) 26 7594 18.4 1.7 1.5 C04HBa0050I18.1 51914 53437 (60204) C Copia00079 Copia (207) 3973 2447 27 966 22.3 0.4 1.2 C04HBa0050I18.1 53738 53991 (59650) C Unknown00046 Unknown (8742) 1302 1051 28 2077 20.2 7.9 3.2 C04HBa0050I18.1 54042 54608 (59033) C Unknown00046 Unknown (8747) 1297 704 29 1368 22.7 0.3 4.3 C04HBa0050I18.1 56487 56855 (56786) C Unknown00046 Unknown (8980) 1064 711 28 39533 0.8 0.2 0.3 C04HBa0050I18.1 58973 63565 (50076) + Copia00188 Copia 1 9809 (0) 30 367 13.8 1.7 0.0 C04HBa0050I18.1 63523 63580 (50061) C Copia00035 Copia (4377) 300 242 31 * 1388 12.2 4.6 1.3 C04HBa0050I18.1 63717 64047 (49594) + Copia00188 Copia 1 9809 (4183) 32 470 34.2 2.1 3.6 C04HBa0050I18.1 64429 64962 (48679) C Copia00014 Copia (3037) 1626 1101 33 * 1303 28.2 3.6 4.0 C04HBa0050I18.1 64540 65090 (48551) + PDR1_I Unknown 2114 2662 (950) 34 * 1397 31.4 4.0 4.2 C04HBa0050I18.1 65085 65970 (47671) + SHACOP11_I_MT Unknown 3536 4392 (0) 35 1499 21.3 2.1 6.2 C04HBa0050I18.1 67771 68190 (45451) + Unknown00020 Unknown 1 403 (4802) 36 631 17.8 0.8 0.0 C04HBa0050I18.1 68075 68203 (45438) C Unknown00034 Unknown (4) 9073 8944 37 * 410 29.9 7.2 2.6 C04HBa0050I18.1 69162 69426 (44215) C Gypsy00155 Gypsy (1356) 5293 5017 38 234 23.7 15.3 1.5 C04HBa0050I18.1 69679 69815 (43826) + Gypsy00071 Gypsy 2377 2532 (10179) 39 237 18.2 0.0 0.0 C04HBa0050I18.1 73451 73505 (40136) C Unknown00034 Unknown (3872) 5205 5151 40 291 29.2 1.0 1.0 C04HBa0050I18.1 77729 77825 (35816) + Unknown00041 Unknown 2762 2858 (704) 41 241 19.7 7.1 3.2 C04HBa0050I18.1 77996 78067 (35574) C Gypsy00046 Gypsy (6848) 4223 4093 42 256 9.3 1.9 0.0 C04HBa0050I18.1 78068 78121 (35520) C STOWAWAY50_OS Unknown (33) 141 87 43 242 10.0 0.0 0.0 C04HBa0050I18.1 78081 78130 (35511) + Copia00105 Copia 7486 7535 (1322) 44 * 310 15.6 1.0 8.2 C04HBa0050I18.1 78232 78244 (35397) C Copia00089 Copia (5798) 5658 5571 45 360 18.5 0.0 1.2 C04HBa0050I18.1 78245 78326 (35315) + GYCUME1_LTR Unknown 359 439 (2207) 46 * 414 16.2 0.0 0.0 C04HBa0050I18.1 78254 78327 (35314) C Gypsy00042 Gypsy (1466) 6032 5959 47 789 9.3 0.0 0.8 C04HBa0050I18.1 79455 79584 (34057) + Copia00200 Copia 4629 4757 (0) 48 2269 4.5 0.7 0.3 C04HBa0050I18.1 79715 80005 (33636) + Copia00090 Copia 1 292 (4583) 49 356 25.8 1.0 0.0 C04HBa0050I18.1 80058 80154 (33487) C Unknown00040 Unknown (2366) 2316 2219 50 * 1518 24.1 8.3 4.2 C04HBa0050I18.1 80072 80712 (32929) + Unknown00020 Unknown 2419 3085 (2120) 51 235 17.4 0.0 0.0 C04HBa0050I18.1 80708 80753 (32888) + Unknown00020 Unknown 3131 3176 (2029) 51 * 2622 6.3 0.8 1.3 C04HBa0050I18.1 80838 81221 (32420) C Gypsy00073 Gypsy (11696) 388 7 52 1328 11.9 0.5 0.5 C04HBa0050I18.1 81394 81604 (32037) C Gypsy00073 Gypsy (0) 12084 11874 53 336 15.6 4.0 10.4 C04HBa0050I18.1 85734 85858 (27783) + Unknown00034 Unknown 1659 5200 (3877) 54 408 13.2 31.9 0.0 C04HBa0050I18.1 85878 85968 (27673) C Copia00171 Copia (1769) 2173 2054 55 * 1607 18.1 7.0 1.6 C04HBa0050I18.1 85963 86333 (27308) + Copia00112 Copia 2245 2635 (6252) 56 372 10.2 4.2 2.8 C04HBa0050I18.1 86332 86402 (27239) + Unknown00044 Unknown 3025 3096 (1447) 57 * 660 11.9 0.0 0.0 C04HBa0050I18.1 89488 89596 (24045) + Copia00110 Copia 2401 2509 (11623) 58 * 662 10.0 0.0 0.0 C04HBa0050I18.1 89595 89684 (23957) + TLP1 Unknown 202 291 (371) 59 484 28.6 7.3 4.0 C04HBa0050I18.1 89837 90208 (23433) + Copia00155 Copia 4972 5355 (147) 60 * 1489 18.9 3.3 7.1 C04HBa0050I18.1 89911 90302 (23339) + Unknown00020 Unknown 27 403 (4802) 61 397 16.5 2.1 3.2 C04HBa0050I18.1 90224 90317 (23324) C Unknown00023 Unknown (2) 4308 4216 62 * 345 14.6 0.0 0.0 C04HBa0050I18.1 92506 92560 (21081) + Unknown00034 Unknown 5145 5199 (3878) 63 261 20.3 0.0 1.5 C04HBa0050I18.1 95704 95768 (17873) + Unknown00034 Unknown 5136 5199 (3878) 64 366 17.4 1.1 3.4 C04HBa0050I18.1 102241 102329 (11312) C Gypsy00104 Gypsy (4347) 266 180 65 1270 20.1 0.7 5.6 C04HBa0050I18.1 110717 111021 (2620) + TLP1 Unknown 1 290 (372) 66 234 21.0 0.0 1.6 C04HBa0050I18.1 112532 112594 (1047) + Unknown00034 Unknown 5145 5206 (3871) 67