SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 413 17.4 3.2 1.1 C04SLm0049I21.1 344 436 (185210) + Copia00149 Copia 8169 8263 (6220) 1 370 20.1 8.9 4.0 C04SLm0049I21.1 437 545 (185101) + Unknown00019 Unknown 14417 14628 (5) 2 466 13.3 3.6 11.4 C04SLm0049I21.1 1177 1369 (184277) + TABARE Unknown 6344 6682 (1299) 3 509 11.5 6.7 5.0 C04SLm0049I21.1 1382 1500 (184146) + LycEPRV_LTR Unknown 4 124 (61) 4 29653 4.6 0.2 0.3 C04SLm0049I21.1 3754 7395 (178251) + TORTL1 Unknown 1 3638 (6057) 5 * 65804 3.9 0.4 1.4 C04SLm0049I21.1 4571 12629 (173017) + Copia00101 Copia 1 7979 (0) 6 7245 4.4 5.6 0.5 C04SLm0049I21.1 12500 13442 (172204) + TORTL1 Unknown 8700 9690 (5) 7 * 284 17.1 5.6 1.4 C04SLm0049I21.1 14077 14147 (171499) C Copia00114 Copia (191) 4419 4346 8 * 2010 10.5 2.7 6.4 C04SLm0049I21.1 14110 14515 (171131) + TLC1_LTR Unknown 189 579 (0) 9 * 34079 4.9 0.1 0.1 C04SLm0049I21.1 14431 18626 (167020) C Copia00010 Copia (0) 4198 1 10 9282 27.0 4.1 4.0 C04SLm0049I21.1 15463 19191 (166455) + Copia00003 Copia 978 4709 (105) 11 * 2025 11.0 2.0 5.7 C04SLm0049I21.1 18837 19242 (166404) + TLC1_LTR Unknown 189 579 (0) 12 * 628 18.6 7.1 1.0 C04SLm0049I21.1 19377 19572 (166074) + Gypsy00007 Gypsy 219 426 (6069) 13 253 27.7 3.7 4.2 C04SLm0049I21.1 19381 19595 (166051) + Unknown00051 Unknown 801 1014 (4442) 14 * 3629 31.7 4.2 4.8 C04SLm0049I21.1 23918 26546 (159100) + ATCOPIA78_I Unknown 1 2611 (1466) 15 630 28.8 1.9 5.5 C04SLm0049I21.1 26546 26802 (158844) + ATCOPIA78_I Unknown 3830 4077 (0) 15 * 2556 17.4 6.1 5.0 C04SLm0049I21.1 26968 27741 (157905) + Gypsy00011 Gypsy 1191 5434 (6058) 16 240 17.9 14.3 0.0 C04SLm0049I21.1 28125 28180 (157466) + Gypsy00011 Gypsy 2307 2370 (5642) 17 1764 14.8 4.6 6.0 C04SLm0049I21.1 29010 29446 (156200) + Gypsy00011 Gypsy 3091 3521 (4491) 17 2399 12.0 4.9 6.0 C04SLm0049I21.1 29625 30156 (155490) + Gypsy00011 Gypsy 3514 4039 (3973) 17 1809 10.9 6.6 2.6 C04SLm0049I21.1 30119 30496 (155150) C Gypsy00011 Gypsy (4106) 3906 3514 18 * 811 16.7 3.1 4.7 C04SLm0049I21.1 30675 31003 (154643) C Gypsy00011 Gypsy (4491) 3521 3114 18 3498 29.4 1.5 1.7 C04SLm0049I21.1 31735 32937 (152709) C Gypsy00049 Gypsy (5050) 9480 8280 19 * 33306 6.2 1.0 0.1 C04SLm0049I21.1 32679 36850 (148796) + Gypsy00173 Gypsy 776 4983 (31) 20 5437 10.1 2.1 3.8 C04SLm0049I21.1 38792 39695 (145951) + Gypsy00011 Gypsy 4241 5129 (2883) 21 943 14.5 3.4 3.1 C04SLm0049I21.1 39955 40245 (145401) C Copia00145 Copia (5435) 6984 6693 22 37116 6.0 0.5 0.6 C04SLm0049I21.1 41491 46183 (139463) C Copia00123 Copia (0) 4687 1 23 1405 4.7 0.5 0.0 C04SLm0049I21.1 47557 47748 (137898) C Unknown00049 Unknown (4271) 4760 4568 24 * 35413 4.7 0.3 1.4 C04SLm0049I21.1 47661 52095 (133551) + Copia00018 Copia 1 4386 (0) 25 502 4.0 1.3 0.0 C04SLm0049I21.1 52096 52170 (133476) C Unknown00049 Unknown (1736) 7295 7220 26 249 4.7 16.3 0.0 C04SLm0049I21.1 52171 52213 (133433) + Copia00018 Copia 1 50 (4336) 27 * 646 4.5 0.0 0.0 C04SLm0049I21.1 52202 52289 (133357) + Copia00018 Copia 1 88 (4298) 28 460 21.5 1.3 3.9 C04SLm0049I21.1 52408 52562 (133084) C Copia00145 Copia (11655) 764 614 29 1177 20.1 3.3 2.4 C04SLm0049I21.1 53024 53392 (132254) C Copia00145 Copia (11660) 759 107 30 262 11.2 0.9 0.0 C04SLm0049I21.1 54094 54209 (131437) + Gypsy00071 Gypsy 3657 3773 (8938) 31 227 12.2 3.8 7.5 C04SLm0049I21.1 57205 57220 (128426) C Gypsy00088 Gypsy (6385) 78 2 32 267 11.5 0.0 4.7 C04SLm0049I21.1 57221 57232 (128414) C Copia00105 Copia (1311) 7546 7486 33 279 7.7 0.0 0.0 C04SLm0049I21.1 57233 57284 (128362) + Unknown00037 Unknown 4504 4555 (284) 34 243 5.8 0.0 0.0 C04SLm0049I21.1 57244 57295 (128351) C MuDR1_HV Unknown (5169) 1291 1240 35 * 304 20.3 1.4 0.0 C04SLm0049I21.1 58171 58239 (127407) + Unknown00034 Unknown 5136 5205 (3872) 36 234 25.0 0.0 7.3 C04SLm0049I21.1 62112 62193 (123453) C TORTL1 Unknown (767) 8928 8853 37 273 23.6 11.4 7.4 C04SLm0049I21.1 62194 62335 (123311) + Copia00072 Copia 65 290 (6596) 38 913 23.8 1.0 0.5 C04SLm0049I21.1 62710 62916 (122730) + Copia00019 Copia 225 432 (4815) 39 648 26.9 7.3 4.9 C04SLm0049I21.1 63232 63595 (122051) + Copia00110 Copia 1769 12793 (1339) 40 460 32.4 5.1 0.8 C04SLm0049I21.1 63657 63911 (121735) + Copia00012 Copia 2463 2728 (2276) 41 924 26.5 15.1 1.0 C04SLm0049I21.1 63924 64334 (121312) C Copia00124 Copia (2963) 2307 1839 42 2718 17.2 1.0 0.4 C04SLm0049I21.1 64465 64953 (120693) + Copia00019 Copia 2900 3391 (1856) 43 228 29.7 6.6 0.0 C04SLm0049I21.1 65198 65288 (120358) C Copia00124 Copia (4437) 833 737 42 722 19.1 1.8 11.6 C04SLm0049I21.1 66054 66338 (119308) + Copia00198 Copia 8076 8332 (24) 44 329 15.1 1.3 4.0 C04SLm0049I21.1 70333 70408 (115238) C Copia00158 Copia (4239) 79 6 45 263 14.6 2.0 2.0 C04SLm0049I21.1 70851 70899 (114747) + TORTL1 Unknown 9541 9589 (106) 46 255 25.6 1.3 1.3 C04SLm0049I21.1 72354 72432 (113214) C Gypsy00176 Gypsy (5096) 2532 2454 47 253 21.6 11.5 4.9 C04SLm0049I21.1 73057 73178 (112468) C TOPIE1_LE_LTR Unknown (823) 242 113 48 29083 9.9 1.4 1.5 C04SLm0049I21.1 75515 80071 (105575) C Copia00092 Copia (0) 4739 1 49 1294 16.1 3.9 5.7 C04SLm0049I21.1 85779 86061 (99585) C Gypsy00052 Gypsy (5527) 280 3 50 * 10620 13.9 3.1 2.0 C04SLm0049I21.1 85811 87648 (97998) C Copia00153 Copia (1170) 6219 4362 51 * 23529 13.9 1.7 1.8 C04SLm0049I21.1 86672 91787 (93859) + Gypsy00181 Gypsy 1 3906 (2878) 52 1389 19.6 5.0 0.3 C04SLm0049I21.1 92934 93215 (92431) + TLP2 Unknown 11 305 (1) 53 427 23.6 5.5 2.7 C04SLm0049I21.1 93839 94021 (91625) + SONATA2 Unknown 26 213 (40) 54 964 17.9 6.5 0.0 C04SLm0049I21.1 95438 95621 (90025) + TLP2 Unknown 11 206 (100) 55 1384 18.7 7.2 1.3 C04SLm0049I21.1 95911 96244 (89402) + TLP2 Unknown 6 662 (0) 56 725 22.4 1.4 3.2 C04SLm0049I21.1 97525 97745 (87901) + Copia00039 Copia 248 464 (4086) 57 306 24.2 2.9 8.6 C04SLm0049I21.1 97829 98072 (87574) + Copia00113 Copia 5096 5325 (7081) 58 299 17.4 3.0 7.1 C04SLm0049I21.1 98080 98178 (87468) C Copia00113 Copia (7215) 5191 5097 59 758 22.0 0.6 0.0 C04SLm0049I21.1 98295 98476 (87170) C Copia00039 Copia (4110) 440 258 60 714 24.2 9.9 0.9 C04SLm0049I21.1 98514 98734 (86912) C TLP2 Unknown (3) 303 63 61 527 19.2 3.1 9.0 C04SLm0049I21.1 98738 98960 (86686) C Unknown00025 Unknown (5848) 460 251 62 1335 16.6 2.4 0.0 C04SLm0049I21.1 99781 100027 (85619) + SONATA2 Unknown 1 253 (0) 63 5541 32.6 5.0 4.2 C04SLm0049I21.1 100365 104635 (81011) C Copia00217 Copia (0) 4377 72 64 4848 7.1 10.9 0.7 C04SLm0049I21.1 111938 112662 (72984) C Gypsy00043 Gypsy (12572) 1322 524 65 1084 18.0 5.0 0.0 C04SLm0049I21.1 113737 113975 (71671) + SONATA2 Unknown 3 253 (0) 66 328 17.9 14.8 4.1 C04SLm0049I21.1 120999 121120 (64526) C ALIEN1_CA Unknown (84) 187 53 67 713 19.7 1.6 3.2 C04SLm0049I21.1 129232 129420 (56226) C SONATA1 Unknown (0) 243 58 68 815 22.6 6.0 12.5 C04SLm0049I21.1 129718 130036 (55610) C Copia00051 Copia (667) 3955 3658 69 407 21.8 10.4 0.8 C04SLm0049I21.1 130252 130385 (55261) + Copia00090 Copia 55 201 (4674) 70 585 20.8 3.8 1.9 C04SLm0049I21.1 132784 132940 (52706) C Copia00151 Copia (2380) 8381 8222 71 286 15.9 3.1 2.1 C04SLm0049I21.1 133627 133722 (51924) + Gypsy00071 Gypsy 2543 2639 (10072) 72 372 6.8 6.8 0.0 C04SLm0049I21.1 134141 134228 (51418) C Copia00181 Copia (325) 1911 1818 73 371 1.4 1.4 0.0 C04SLm0049I21.1 134171 134239 (51407) C Gypsy00046 Gypsy (6925) 4146 4077 74 * 924 18.9 7.1 1.8 C04SLm0049I21.1 135230 135455 (50191) C Gypsy00043 Gypsy (12591) 1303 1066 75 1086 15.3 0.0 1.9 C04SLm0049I21.1 135502 135708 (49938) C Copia00110 Copia (579) 13553 13351 76 289 15.0 1.2 4.8 C04SLm0049I21.1 135861 135944 (49702) + Unknown00019 Unknown 636 716 (13917) 77 901 17.3 8.3 10.7 C04SLm0049I21.1 137656 138199 (47447) C Copia00113 Copia (7066) 5340 4810 78 634 17.7 14.7 8.4 C04SLm0049I21.1 137936 138544 (47102) + Copia00113 Copia 4836 5494 (6912) 79 * 432 25.2 2.0 2.6 C04SLm0049I21.1 145038 145188 (40458) C Copia00151 Copia (2380) 8381 8232 80 295 22.3 4.1 4.1 C04SLm0049I21.1 154060 154157 (31489) + Copia00143 Copia 127 224 (5080) 81 401 26.2 2.0 3.4 C04SLm0049I21.1 164650 164795 (20851) + Unknown00043 Unknown 5299 5442 (5882) 82 490 31.1 5.9 0.4 C04SLm0049I21.1 170362 170600 (15046) + TS2 Unknown 4 255 (400) 83 1786 14.7 4.0 0.3 C04SLm0049I21.1 172744 173044 (12602) C Copia00110 Copia (11415) 2717 2406 84 233 10.7 5.0 6.2 C04SLm0049I21.1 174835 174914 (10732) + SHAMUDRAV_MT Unknown 1517 1595 (5211) 85 * 264 9.6 1.0 5.2 C04SLm0049I21.1 174872 174970 (10676) C HELITRON7_OS Unknown (2797) 3776 1621 86 228 20.4 0.0 0.0 C04SLm0049I21.1 175779 175822 (9824) C SHACOP18_I_MT Unknown (1203) 2733 2690 87 528 25.6 1.4 4.8 C04SLm0049I21.1 175843 176051 (9595) + TLP2 Unknown 7 208 (98) 88 705 22.8 2.0 2.8 C04SLm0049I21.1 177496 177743 (7903) C Gypsy00073 Gypsy (11704) 380 135 89 353 27.2 6.0 1.7 C04SLm0049I21.1 178751 178866 (6780) C Gypsy00023 Gypsy (118) 5213 5093 90 * 378 28.1 7.1 6.6 C04SLm0049I21.1 178850 179215 (6431) + Copia00089 Copia 3466 3833 (7623) 91 343 7.9 0.0 0.9 C04SLm0049I21.1 179847 179921 (5725) + MuDR1_HV Unknown 1256 5761 (4227) 92 295 5.4 0.0 0.0 C04SLm0049I21.1 179866 179921 (5725) + Copia00181 Copia 1813 1868 (368) 93 1083 19.8 5.7 2.6 C04SLm0049I21.1 181391 181741 (3905) C Gypsy00043 Gypsy (10891) 1315 934 94 722 18.6 18.0 0.8 C04SLm0049I21.1 181545 181783 (3863) C Copia00110 Copia (586) 13546 13267 95 * 485 24.1 0.0 0.7 C04SLm0049I21.1 181898 182035 (3611) C Copia00110 Copia (837) 13295 13159 95 1178 21.4 1.4 2.8 C04SLm0049I21.1 182519 182806 (2840) + TLP1 Unknown 4 287 (375) 96