psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 1265 0 0 0 0 0 2 1412 - SGN-E746371 1278 0 1265 C09HBa0194K19.1 57577 42990 45667 3 349,307,609, 13,362,669, 42990,44047,45058, 995 0 0 0 0 0 3 1413 - SGN-E553484 995 0 995 C09HBa0194K19.1 57577 43247 45655 4 79,12,307,597, 0,79,91,398, 43247,43327,44047,45058, 743 0 0 0 0 0 2 277 - SGN-E553551 743 0 743 C09HBa0194K19.1 57577 41460 42480 3 113,81,549, 0,113,194, 41460,41655,41931, 827 0 0 0 1 1 1 704 - SGN-E554291 828 0 828 C09HBa0194K19.1 57577 44082 45613 3 64,208,555, 0,65,273, 44082,44146,45058, 573 5 0 0 1 1 5 4528 + SGN-E687859 579 0 579 C09HBa0194K19.1 57577 34709 39815 7 77,102,55,89,170,66,19, 0,77,179,234,323,493,560, 34709,37011,37258,38825,39480,39730,39796, 461 0 0 0 0 0 1 708 - SGN-E553231 600 0 461 C09HBa0194K19.1 57577 42943 44112 2 396,65, 139,535, 42943,44047, 591 1 0 0 0 0 2 1412 - SGN-E206939 592 0 592 C09HBa0194K19.1 57577 43218 45222 3 121,307,164, 0,121,428, 43218,44047,45058, 312 8 0 0 1 16 1 15 - SGN-E210363 336 0 336 C09HBa0194K19.1 57577 42144 42479 2 255,65, 0,271, 42144,42414, 497 0 0 0 0 0 1 113 + SGN-E212780 497 0 497 C09HBa0194K19.1 57577 40914 41524 2 186,311, 0,186, 40914,41213, 130 1 0 0 0 0 0 0 + SGN-E577756 708 386 517 C09HBa0194K19.1 57577 20620 20751 1 131, 386, 20620, 35 0 0 0 0 0 1 2 - SGN-E319362 410 100 135 C09HBa0194K19.1 57577 20009 20046 2 29,6, 275,304, 20009,20040, 32 2 0 0 0 0 0 0 + SGN-E320555 660 534 568 C09HBa0194K19.1 57577 17080 17114 1 34, 534, 17080, 634 0 0 0 0 0 1 1 - SGN-E322575 634 0 634 C09HBa0194K19.1 57577 45080 45715 2 51,583, 0,51, 45080,45132, 652 3 0 2 0 0 0 0 - SGN-E322505 669 0 657 C09HBa0194K19.1 57577 45058 45715 1 657, 12, 45058, 681 0 0 0 0 0 3 278 - SGN-E379253 681 0 681 C09HBa0194K19.1 57577 41532 42491 4 41,81,552,7, 0,41,122,674, 41532,41655,41931,42484, 34 2 0 0 0 0 0 0 + SGN-E375630 695 584 620 C09HBa0194K19.1 57577 32130 32166 1 36, 584, 32130, 34 2 0 0 0 0 0 0 + SGN-E375712 690 579 615 C09HBa0194K19.1 57577 32130 32166 1 36, 579, 32130, 32 1 0 0 0 0 0 0 + SGN-E376541 619 580 613 C09HBa0194K19.1 57577 16107 16140 1 33, 580, 16107, 591 1 0 0 0 0 3 383 - SGN-E395700 592 0 592 C09HBa0194K19.1 57577 39759 40734 4 89,161,334,8, 0,89,250,584, 39759,40028,40305,40726, 31 0 0 0 0 0 0 0 + SGN-E397801 711 667 698 C09HBa0194K19.1 57577 16110 16141 1 31, 667, 16110, 31 0 0 0 0 0 0 0 - SGN-E539450 533 148 179 C09HBa0194K19.1 57577 20006 20037 1 31, 354, 20006, 807 1 0 0 0 0 1 704 - SGN-E726244 808 0 808 C09HBa0194K19.1 57577 44198 45710 2 156,652, 0,156, 44198,45058, 844 0 0 1 0 0 2 705 - SGN-E729571 845 0 845 C09HBa0194K19.1 57577 44068 45618 3 286,325,234, 0,286,611, 44068,45058,45384, 917 7 0 0 5 13 3 285 + SGN-E731214 951 0 937 C09HBa0194K19.1 57577 41223 42432 8 350,81,410,25,7,16,27,8, 0,350,431,842,876,884,901,929, 41223,41655,41931,42341,42374,42381,42397,42424, 408 0 0 0 1 1 2 88 + SGN-E731891 412 0 409 C09HBa0194K19.1 57577 41223 41719 3 350,52,6, 0,350,403, 41223,41655,41713, 31 0 0 0 0 0 0 0 + SGN-E721973 711 507 538 C09HBa0194K19.1 57577 20006 20037 1 31, 507, 20006, 499 7 0 0 1 2 7 4635 + SGN-E698642 516 8 516 C09HBa0194K19.1 57577 34694 39835 9 16,10,65,102,55,89,25,39,105, 8,26,36,101,203,258,347,372,411, 34694,34710,34721,37011,37258,38825,39480,39611,39730, 802 0 0 0 1 1 1 704 - SGN-E701282 803 0 803 C09HBa0194K19.1 57577 44214 45720 3 47,93,662, 0,48,141, 44214,44261,45058, 814 0 0 0 1 1 2 705 - SGN-E708920 817 2 817 C09HBa0194K19.1 57577 44193 45712 4 19,4,137,654, 0,19,24,161, 44193,44213,44217,45058, 31 0 0 0 0 0 0 0 + SGN-E249876 613 444 475 C09HBa0194K19.1 57577 20006 20037 1 31, 444, 20006, 59 2 0 0 1 69 1 70 - SGN-E263117 671 180 310 C09HBa0194K19.1 57577 44123 44254 2 20,41, 361,450, 44123,44213, 63 5 0 0 0 0 0 0 - SGN-E219032 407 292 360 C09HBa0194K19.1 57577 17215 17283 1 68, 47, 17215, 407 2 0 1 0 0 1 708 - SGN-E216228 426 0 410 C09HBa0194K19.1 57577 42998 44116 2 341,69, 16,357, 42998,44047, 496 2 0 0 0 0 1 708 - SGN-E238725 516 0 498 C09HBa0194K19.1 57577 42996 44202 2 343,155, 18,361, 42996,44047, 304 1 0 0 0 0 0 0 - SGN-E238919 327 0 305 C09HBa0194K19.1 57577 43000 43305 1 305, 22, 43000, 387 2 0 0 0 0 1 708 + SGN-E282334 403 14 403 C09HBa0194K19.1 57577 43005 44102 2 334,55, 14,348, 43005,44047, 35 0 0 0 0 0 1 2 - SGN-E282035 405 99 134 C09HBa0194K19.1 57577 20009 20046 2 29,6, 271,300, 20009,20040, 31 0 0 0 0 0 0 0 + SGN-E291470 551 457 488 C09HBa0194K19.1 57577 20006 20037 1 31, 457, 20006, 472 0 0 0 0 0 0 0 - SGN-E304789 472 0 472 C09HBa0194K19.1 57577 45189 45661 1 472, 0, 45189, 202 3 0 1 1 1 2 173 + SGN-E329504 207 0 207 C09HBa0194K19.1 57577 40614 40993 4 25,107,46,28, 0,25,132,179, 40614,40726,40919,40965, 35 0 0 0 0 0 1 2 - SGN-E332822 620 59 94 C09HBa0194K19.1 57577 20009 20046 2 29,6, 526,555, 20009,20040, 586 1 0 0 0 0 1 704 - SGN-E332955 587 0 587 C09HBa0194K19.1 57577 44321 45612 2 33,554, 0,33, 44321,45058, 35 0 0 0 0 0 1 2 - SGN-E331883 609 229 264 C09HBa0194K19.1 57577 20009 20046 2 29,6, 345,374, 20009,20040, 35 0 0 0 0 0 1 2 - SGN-E331884 606 229 264 C09HBa0194K19.1 57577 20009 20046 2 29,6, 342,371, 20009,20040, 568 0 0 0 0 0 5 4528 + SGN-E327344 568 0 568 C09HBa0194K19.1 57577 34710 39806 6 76,102,55,89,170,76, 0,76,178,233,322,492, 34710,37011,37258,38825,39480,39730, 31 0 0 0 0 0 0 0 + SGN-E324116 377 128 159 C09HBa0194K19.1 57577 20006 20037 1 31, 128, 20006, 302 3 0 0 0 0 2 1183 - SGN-E313451 305 0 305 C09HBa0194K19.1 57577 44292 45780 3 62,237,6, 0,62,299, 44292,45058,45774, 35 0 0 0 0 0 1 2 - SGN-E316250 703 224 259 C09HBa0194K19.1 57577 20009 20046 2 29,6, 444,473, 20009,20040, 456 11 0 0 2 22 7 4657 + SGN-E367725 489 0 489 C09HBa0194K19.1 57577 34699 39823 8 44,20,103,56,87,25,35,97, 0,44,85,188,245,332,357,392, 34699,34744,37010,37258,38827,39480,39611,39726, 446 3 0 0 0 0 3 826 + SGN-E367479 449 0 449 C09HBa0194K19.1 57577 38840 40115 4 74,170,118,87, 0,74,244,362, 38840,39480,39730,40028, 595 6 0 0 1 18 1 708 - SGN-E689876 643 4 623 C09HBa0194K19.1 57577 43020 44329 3 130,189,282, 20,168,357, 43020,43150,44047, 594 9 0 0 1 18 1 708 - SGN-E693716 646 0 621 C09HBa0194K19.1 57577 43020 44331 3 130,189,284, 25,173,362, 43020,43150,44047, 814 12 0 0 0 0 1 704 - SGN-E690146 830 4 830 C09HBa0194K19.1 57577 44166 45696 2 188,638, 0,188, 44166,45058, 200 2 0 0 1 19 1 1 - SGN-E693986 759 0 221 C09HBa0194K19.1 57577 43020 43223 2 127,75, 538,684, 43020,43148, 430 5 0 0 1 18 1 708 - SGN-E690342 506 7 460 C09HBa0194K19.1 57577 43020 44163 3 130,189,116, 46,194,383, 43020,43150,44047, 435 3 0 0 1 18 1 708 - SGN-E694182 507 0 456 C09HBa0194K19.1 57577 43020 44166 3 130,189,119, 51,199,388, 43020,43150,44047, 382 2 0 0 1 18 1 708 - SGN-E690516 416 0 402 C09HBa0194K19.1 57577 43027 44119 3 123,189,72, 14,155,344, 43027,43150,44047, 374 6 0 0 1 18 1 708 - SGN-E694356 419 0 398 C09HBa0194K19.1 57577 43031 44119 3 119,189,72, 21,158,347, 43031,43150,44047, 313 5 0 0 1 18 0 0 - SGN-E691105 376 8 344 C09HBa0194K19.1 57577 43020 43338 2 130,188, 32,180, 43020,43150, 315 8 0 0 1 18 0 0 - SGN-E694945 378 0 341 C09HBa0194K19.1 57577 43020 43343 2 130,193, 37,185, 43020,43150, 61 2 0 0 1 1 2 8 - SGN-E695797 283 162 226 C09HBa0194K19.1 57577 11362 11433 4 9,6,19,29, 57,67,73,92, 11362,11371,11384,11404,