psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 495 0 0 0 0 0 1 151 + SGN-E555362 519 0 495 C09SLe0103M07.1 90836 86231 86877 2 39,456, 0,39, 86231,86421, 495 0 0 0 0 0 1 151 + SGN-E551595 519 0 495 C09SLe0103M07.1 90836 86231 86877 2 39,456, 0,39, 86231,86421, 608 0 0 0 0 0 1 4484 + SGN-E310587 608 0 608 C09SLe0103M07.1 90836 69334 74426 2 287,321, 0,287, 69334,74105, 393 19 0 0 2 72 0 0 - SGN-E367812 491 0 484 C09SLe0103M07.1 90836 49788 50200 3 33,8,371, 7,111,120, 49788,49821,49829, 470 12 0 1 2 2 1 4 - SGN-E367813 731 246 731 C09SLe0103M07.1 90836 50486 50973 3 191,157,135, 0,192,350, 50486,50677,50838, 553 20 0 0 3 18 4 375 - SGN-E368582 591 0 591 C09SLe0103M07.1 90836 52554 53502 6 20,89,56,348,13,47, 0,21,110,178,526,544, 52554,52620,53030,53086,53435,53455, 48 0 0 0 0 0 0 0 - SGN-E368582 591 396 444 C09SLe0103M07.1 90836 52521 52569 1 48, 147, 52521, 46 1 0 0 1 1 1 99 - SGN-E368582 591 539 587 C09SLe0103M07.1 90836 52871 53017 2 21,26, 4,26, 52871,52991, 547 33 0 0 1 7 2 214 - SGN-E372634 750 0 587 C09SLe0103M07.1 90836 37301 38095 3 115,373,92, 163,278,658, 37301,37620,38003, 293 18 0 0 1 1 0 0 - SGN-E377741 420 0 312 C09SLe0103M07.1 90836 49818 50129 2 11,300, 108,120, 49818,49829, 301 10 0 0 1 1 1 4 - SGN-E392248 564 247 559 C09SLe0103M07.1 90836 50658 50973 2 176,135, 5,182, 50658,50838, 360 21 0 0 2 72 0 0 - SGN-E392488 473 12 465 C09SLe0103M07.1 90836 49788 50169 3 33,8,340, 8,112,121, 49788,49821,49829, 42 2 0 0 0 0 0 0 - SGN-E541907 809 756 800 C09SLe0103M07.1 90836 43406 43450 1 44, 9, 43406, 146 2 0 0 0 0 0 0 + SGN-E543112 727 502 650 C09SLe0103M07.1 90836 47484 47632 1 148, 502, 47484, 142 4 0 2 0 0 0 0 + SGN-E543113 752 556 704 C09SLe0103M07.1 90836 47484 47632 1 148, 556, 47484, 146 2 0 0 0 0 0 0 + SGN-E543114 777 556 704 C09SLe0103M07.1 90836 47484 47632 1 148, 556, 47484, 141 6 0 0 0 0 1 1 + SGN-E543115 749 556 703 C09SLe0103M07.1 90836 47484 47632 2 116,31, 556,672, 47484,47601, 725 0 0 0 0 0 2 4488 + SGN-E545671 726 0 725 C09SLe0103M07.1 90836 69333 74546 3 288,429,8, 0,288,717, 69333,74105,74538, 724 1 0 0 0 0 2 4488 + SGN-E545672 725 0 725 C09SLe0103M07.1 90836 69333 74546 3 288,429,8, 0,288,717, 69333,74105,74538, 118 1 0 0 0 0 0 0 - SGN-E548768 808 679 798 C09SLe0103M07.1 90836 53547 53666 1 119, 10, 53547, 371 11 0 0 1 1 1 4 - SGN-E235472 629 246 629 C09SLe0103M07.1 90836 50587 50973 2 247,135, 0,248, 50587,50838, 159 8 0 0 1 1 1 4 - SGN-E240889 414 246 414 C09SLe0103M07.1 90836 50802 50973 2 32,135, 0,33, 50802,50838, 242 4 0 0 0 0 2 469 + SGN-E239863 254 8 254 C09SLe0103M07.1 90836 83603 84318 3 125,99,22, 8,133,232, 83603,83832,84296, 456 17 0 0 0 0 4 2140 + SGN-E242569 474 1 474 C09SLe0103M07.1 90836 81231 83844 5 37,163,138,123,12, 1,38,201,339,462, 81231,83051,83336,83605,83832, 222 10 0 0 2 2 1 4 - SGN-E240117 480 246 480 C09SLe0103M07.1 90836 50737 50973 3 4,93,135, 0,5,99, 50737,50741,50838, 529 18 0 0 1 5 4 317 - SGN-E243672 552 0 552 C09SLe0103M07.1 90836 52638 53502 5 89,56,342,13,47, 0,89,145,487,505, 52638,52958,53092,53435,53455, 110 6 0 0 1 11 1 53 - SGN-E243672 552 425 552 C09SLe0103M07.1 90836 52917 53086 2 10,106, 0,21, 52917,52980, 48 0 0 0 0 0 0 0 - SGN-E243672 552 396 444 C09SLe0103M07.1 90836 52521 52569 1 48, 108, 52521, 33 0 0 0 0 0 0 0 - SGN-E243672 552 464 497 C09SLe0103M07.1 90836 52927 52960 1 33, 55, 52927, 377 12 0 0 1 7 3 784 + SGN-E244572 443 8 404 C09SLe0103M07.1 90836 83603 84776 4 125,99,92,73, 8,133,232,331, 83603,83832,84296,84703, 304 10 0 0 2 2 1 4 - SGN-E228402 562 246 562 C09SLe0103M07.1 90836 50655 50973 3 57,122,135, 0,58,181, 50655,50712,50838, 82 4 0 0 0 0 0 0 - SGN-E231206 332 246 332 C09SLe0103M07.1 90836 50887 50973 1 86, 0, 50887, 932 0 0 0 1 1 1 1 + SGN-E706346 944 0 933 C09SLe0103M07.1 90836 27351 28284 3 868,7,57, 0,869,876, 27351,28219,28227, 453 28 0 0 1 3 2 222 - SGN-E253404 496 0 484 C09SLe0103M07.1 90836 52535 53238 4 235,44,56,146, 12,247,294,350, 52535,52914,52958,53092, 128 4 0 0 3 77 4 3390 - SGN-E253404 496 278 487 C09SLe0103M07.1 90836 49495 53017 6 9,30,21,2,32,38, 9,19,80,101,148,180, 49495,49527,52871,52903,52905,52979, 112 2 0 0 3 156 3 3002 - SGN-E253404 496 135 405 C09SLe0103M07.1 90836 49453 52569 4 20,32,14,48, 91,205,244,313, 49453,49477,52497,52521, 638 27 0 0 0 0 5 4814 + SGN-E255037 665 0 665 C09SLe0103M07.1 90836 78159 83638 6 164,120,47,163,138,33, 0,164,284,331,494,632, 78159,80879,81221,83051,83336,83605, 516 2 0 0 0 0 0 0 + SGN-E223466 518 0 518 C09SLe0103M07.1 90836 76348 76866 1 518, 0, 76348, 419 2 0 0 0 0 1 2 + SGN-E223529 422 0 421 C09SLe0103M07.1 90836 76443 76866 2 404,17, 0,404, 76443,76849, 376 2 0 0 1 2 0 0 + SGN-E215340 380 0 380 C09SLe0103M07.1 90836 76486 76864 2 363,15, 0,365, 76486,76849, 432 2 0 0 0 0 0 0 + SGN-E215436 434 0 434 C09SLe0103M07.1 90836 76432 76866 1 434, 0, 76432, 295 0 0 0 0 0 1 87 + SGN-E270850 295 0 295 C09SLe0103M07.1 90836 77921 78303 2 108,187, 0,108, 77921,78116, 376 20 0 0 1 7 3 1829 + SGN-E272096 486 0 403 C09SLe0103M07.1 90836 84333 86558 4 55,73,131,137, 0,62,135,266, 84333,84703,86139,86421, 532 1 0 0 0 0 1 4484 + SGN-E297138 542 0 533 C09SLe0103M07.1 90836 69529 74546 2 92,441, 0,92, 69529,74105, 85 1 0 1 0 0 0 0 - SGN-E329498 483 384 471 C09SLe0103M07.1 90836 52244 52331 1 87, 12, 52244, 764 0 0 1 0 0 1 107 + SGN-E316310 765 0 765 C09SLe0103M07.1 90836 76376 77248 2 25,740, 0,25, 76376,76508, 692 0 0 0 0 0 6 2393 + SGN-E343500 692 0 692 C09SLe0103M07.1 90836 83126 86211 7 88,138,123,99,90,82,72, 0,88,226,349,448,538,620, 83126,83336,83605,83832,84296,84694,86139, 479 4 0 0 0 0 2 673 + SGN-E365643 483 0 483 C09SLe0103M07.1 90836 83844 85000 3 87,90,306, 0,87,177, 83844,84296,84694, 603 3 0 0 0 0 5 2362 + SGN-E366155 606 0 606 C09SLe0103M07.1 90836 80948 83916 6 51,47,163,138,123,84, 0,51,98,261,399,522, 80948,81221,83051,83336,83605,83832, 462 7 0 0 0 0 4 1842 + SGN-E366156 469 0 469 C09SLe0103M07.1 90836 84366 86677 5 20,82,131,225,11, 0,20,102,233,458, 84366,84694,86139,86421,86666, 331 3 0 0 0 0 3 2127 + SGN-E366157 334 0 334 C09SLe0103M07.1 90836 80961 83422 4 38,47,163,86, 0,38,85,248, 80961,81221,83051,83336, 538 2 0 0 0 0 4 4648 + SGN-E367293 540 0 540 C09SLe0103M07.1 90836 77943 83131 5 86,207,120,47,80, 0,86,293,413,460, 77943,78116,80879,81221,83051, 49 1 0 0 0 0 0 0 - SGN-E696994 809 632 682 C09SLe0103M07.1 90836 3228 3278 1 50, 127, 3228, 40 2 0 0 0 0 0 0 + SGN-E355888 537 319 361 C09SLe0103M07.1 90836 57547 57589 1 42, 319, 57547,