psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 1999 58 0 0 5 7 8 1494 + SGN-U312736 2091 14 2078 C09HBa0168F14.3 116478 102719 106270 13 5,13,279,9,1019,245,97,292,35,49,4,6,4, 14,19,33,312,321,1340,1585,1682,1976,2011,2061,2067,2074, 102719,102725,102740,103275,103617,105364,105707,105879,106171,106207,106256,106260,106266, 649 13 0 0 1 1 2 561 + SGN-U312737 673 0 663 C09HBa0168F14.3 116478 102788 104011 4 231,37,9,385, 0,231,268,278, 102788,103247,103617,103626, 783 0 0 0 0 0 5 1809 - SGN-U313350 830 0 783 C09HBa0168F14.3 116478 110912 113504 6 340,130,86,46,120,61, 47,387,517,603,649,769, 110912,111379,112519,113050,113195,113443, 46 0 0 0 1 4 1 1 - SGN-U313546 614 121 171 C09HBa0168F14.3 116478 53092 53139 2 40,6, 443,487, 53092,53133, 45 1 0 0 0 0 0 0 + SGN-U313787 1294 1195 1241 C09HBa0168F14.3 116478 53090 53136 1 46, 1195, 53090, 1084 0 0 0 0 0 1 864 + SGN-U314044 1094 0 1084 C09HBa0168F14.3 116478 72816 74764 2 83,1001, 0,83, 72816,73763, 93 0 0 0 1 8 1 9 - SGN-U314606 840 0 101 C09HBa0168F14.3 116478 78395 78497 2 65,28, 739,812, 78395,78469, 34 0 0 0 1 1 1 2 - SGN-U315254 2149 1746 1781 C09HBa0168F14.3 116478 98587 98623 2 28,6, 368,397, 98587,98617, 2009 0 0 0 0 0 14 5096 - SGN-U316066 2018 0 2009 C09HBa0168F14.3 116478 23992 31097 15 356,126,86,76,144,138,101,103,126,78,153,102,68,130,222, 9,365,491,577,653,797,935,1036,1139,1265,1343,1496,1598,1666,1796, 23992,24815,25051,25406,25747,25980,26739,27756,27938,28236,28515,28810,28985,30670,30875, 48 0 0 0 0 0 0 0 - SGN-U317153 1274 1226 1274 C09HBa0168F14.3 116478 113459 113507 1 48, 0, 113459, 51 0 0 0 0 0 0 0 + SGN-U317739 1001 23 74 C09HBa0168F14.3 116478 111460 111511 1 51, 23, 111460, 38 0 0 0 0 0 3 128 - SGN-U317869 1561 1523 1561 C09HBa0168F14.3 116478 2009 2175 4 7,22,4,5, 0,7,29,33, 2009,2142,2165,2170, 2115 3 0 0 0 0 5 1862 + SGN-U318140 2142 0 2118 C09HBa0168F14.3 116478 97645 101625 6 241,9,1022,245,100,501, 0,241,250,1272,1517,1617, 97645,99171,99257,100458,100893,101124, 651 1 0 0 1 1 4 903 - SGN-U318502 1241 588 1241 C09HBa0168F14.3 116478 114923 116478 6 71,193,134,128,77,49, 0,72,265,399,527,604, 114923,114994,115601,115879,116217,116429, 31 1 0 0 0 0 0 0 + SGN-U319540 1535 119 151 C09HBa0168F14.3 116478 53101 53133 1 32, 119, 53101, 49 4 0 0 0 0 0 0 - SGN-U319585 607 293 346 C09HBa0168F14.3 116478 50196 50249 1 53, 261, 50196, 35 0 0 0 0 0 0 0 - SGN-U320306 879 106 141 C09HBa0168F14.3 116478 53089 53124 1 35, 738, 53089, 101 0 0 0 0 0 0 0 - SGN-U320569 1736 28 129 C09HBa0168F14.3 116478 1833 1934 1 101, 1607, 1833, 1500 4 0 0 2 2 2 3192 - SGN-U320573 1515 0 1506 C09HBa0168F14.3 116478 60674 65370 5 61,118,341,169,815, 9,71,190,531,700, 60674,60735,60853,62560,64555, 1169 1 0 0 0 0 2 973 - SGN-U322603 1170 0 1170 C09HBa0168F14.3 116478 69788 71931 3 213,322,635, 0,213,535, 69788,70642,71296, 1414 0 0 0 0 0 4 2512 - SGN-U323155 1445 0 1414 C09HBa0168F14.3 116478 40704 44630 5 883,231,120,121,59, 31,914,1145,1265,1386, 40704,41866,42612,42871,44571, 2212 3 0 0 0 0 0 0 - SGN-U323373 2226 1 2216 C09HBa0168F14.3 116478 18939 21154 1 2215, 10, 18939, 621 0 0 0 0 0 1 1095 - SGN-U323979 655 34 655 C09HBa0168F14.3 116478 4884 6600 2 361,260, 0,361, 4884,6340, 34 0 0 0 0 0 0 0 + SGN-U324358 1315 1056 1090 C09HBa0168F14.3 116478 53098 53132 1 34, 1056, 53098, 48 3 0 0 0 0 1 7 + SGN-U325553 860 787 838 C09HBa0168F14.3 116478 38842 38900 2 14,37, 787,801, 38842,38863, 1330 1 0 0 0 0 0 0 - SGN-U327203 1352 0 1331 C09HBa0168F14.3 116478 107016 108347 1 1331, 21, 107016, 144 6 0 0 3 292 3 410 - SGN-U327203 1352 107 549 C09HBa0168F14.3 116478 107335 107895 4 25,11,17,97, 803,860,877,1148, 107335,107392,107407,107798, 117 5 0 0 1 438 1 320 - SGN-U327203 1352 452 1012 C09HBa0168F14.3 116478 107798 108240 2 25,97, 340,803, 107798,108143, 76 2 0 0 0 0 0 0 - SGN-U327203 1352 470 548 C09HBa0168F14.3 116478 108429 108507 1 78, 804, 108429, 55 0 0 0 2 37 2 35 - SGN-U327203 1352 113 205 C09HBa0168F14.3 116478 107334 107424 3 26,12,17, 1147,1206,1222, 107334,107393,107407, 111 5 0 0 1 1 1 1 - SGN-U327233 1371 1241 1358 C09HBa0168F14.3 116478 11047 11164 3 81,30,5, 13,95,125, 11047,11128,11159, 872 0 0 0 0 0 4 1603 + SGN-U328105 883 0 872 C09HBa0168F14.3 116478 88147 90622 5 94,102,110,152,414, 0,94,196,306,458, 88147,88443,89270,89763,90208, 57 1 0 0 0 0 0 0 - SGN-U329130 669 611 669 C09HBa0168F14.3 116478 38993 39051 1 58, 0, 38993, 39 1 0 0 0 0 2 2 + SGN-U330614 766 49 89 C09HBa0168F14.3 116478 53089 53131 3 26,4,10, 49,75,79, 53089,53116,53121, 37 0 0 0 0 0 0 0 - SGN-U330936 735 113 150 C09HBa0168F14.3 116478 53090 53127 1 37, 585, 53090, 53 3 0 0 0 0 0 0 - SGN-U332237 317 240 296 C09HBa0168F14.3 116478 75374 75430 1 56, 21, 75374, 773 0 0 0 0 0 0 0 - SGN-U332510 773 0 773 C09HBa0168F14.3 116478 6762 7535 1 773, 0, 6762, 343 23 0 1 1 2 1 1 + SGN-U333877 391 14 383 C09HBa0168F14.3 116478 104231 104599 2 353,14, 14,369, 104231,104585, 333 5 0 0 0 0 2 589 + SGN-U333878 405 66 404 C09HBa0168F14.3 116478 102778 103705 3 241,9,88, 66,307,316, 102778,103275,103617, 425 21 0 0 1 1 6 1811 - SGN-U334294 447 0 447 C09HBa0168F14.3 116478 111242 113499 7 10,130,86,46,16,102,56, 0,10,140,226,272,289,391, 111242,111379,112519,113050,113195,113213,113443, 250 6 0 0 1 20 1 19 + SGN-U334296 307 31 307 C09HBa0168F14.3 116478 110952 111227 2 230,26, 31,281, 110952,111201, 332 19 0 0 2 11 3 1149 + SGN-U334297 465 103 465 C09HBa0168F14.3 116478 111103 112603 5 17,47,73,130,84, 103,121,178,251,381, 111103,111120,111179,111379,112519, 342 0 0 0 0 0 1 907 + SGN-U334745 836 494 836 C09HBa0168F14.3 116478 72803 74052 2 53,289, 494,547, 72803,73763, 498 1 0 0 0 0 0 0 + SGN-U334746 506 7 506 C09HBa0168F14.3 116478 72788 73287 1 499, 7, 72788, 243 1 0 0 0 0 2 864 + SGN-U334747 282 0 244 C09HBa0168F14.3 116478 72798 73906 3 99,3,142, 0,99,102, 72798,73042,73764, 636 1 0 0 1 1 0 0 + SGN-U334748 645 7 645 C09HBa0168F14.3 116478 72788 73425 2 518,119, 7,526, 72788,73306, 1889 0 0 0 0 0 13 5174 - SGN-U335469 1904 0 1889 C09HBa0168F14.3 116478 24056 31119 14 292,126,86,76,144,138,101,103,126,153,102,68,130,244, 15,307,433,519,595,739,877,978,1081,1207,1360,1462,1530,1660, 24056,24815,25051,25406,25747,25980,26739,27756,27938,28515,28810,28985,30670,30875, 776 3 0 0 0 0 2 1209 - SGN-U335470 785 6 785 C09HBa0168F14.3 116478 29105 31093 3 431,130,218, 0,431,561, 29105,30670,30875, 36 2 0 0 0 0 1 126 + SGN-U336672 308 0 38 C09HBa0168F14.3 116478 2009 2173 2 7,31, 0,7, 2009,2142, 47 0 0 0 1 2 1 1 - SGN-U337964 662 366 415 C09HBa0168F14.3 116478 53091 53139 2 42,5, 247,291, 53091,53134, 735 1 0 0 1 1 4 157 - SGN-U340651 737 0 737 C09HBa0168F14.3 116478 67072 67965 6 12,53,7,5,91,568, 0,12,66,73,78,169, 67072,67085,67138,67146,67152,67397, 42 3 0 0 0 0 0 0 - SGN-U340651 737 577 622 C09HBa0168F14.3 116478 69387 69432 1 45, 115, 69387, 688 2 0 0 0 0 4 420 + SGN-U341241 690 0 690 C09HBa0168F14.3 116478 87108 88218 5 156,108,159,84,183, 0,156,264,423,507, 87108,87378,87634,87865,88035, 32 0 0 0 0 0 0 0 - SGN-U341394 513 480 512 C09HBa0168F14.3 116478 53102 53134 1 32, 1, 53102, 139 5 0 0 0 0 1 1 + SGN-U344226 460 80 224 C09HBa0168F14.3 116478 75294 75439 2 90,54, 80,170, 75294,75385, 47 0 0 0 1 19 0 0 + SGN-U344400 536 459 525 C09HBa0168F14.3 116478 53085 53132 2 11,36, 459,489, 53085,53096, 36 0 0 0 0 0 0 0 - SGN-U344400 536 489 525 C09HBa0168F14.3 116478 53090 53126 1 36, 11, 53090, 442 0 0 0 0 0 1 79 + SGN-U344547 471 29 471 C09HBa0168F14.3 116478 66473 66994 2 369,73, 29,398, 66473,66921, 310 17 0 0 1 5 1 81 - SGN-U344547 471 139 471 C09HBa0168F14.3 116478 77321 77729 3 73,248,6, 0,73,326, 77321,77475,77723, 435 0 0 0 0 0 0 0 - SGN-U345474 435 0 435 C09HBa0168F14.3 116478 109286 109721 1 435, 0, 109286, 647 0 0 0 0 0 3 1143 - SGN-U345985 670 4 651 C09HBa0168F14.3 116478 34508 36298 4 349,130,120,48, 19,368,498,618, 34508,34937,35357,36250, 32 0 0 0 0 0 0 0 + SGN-U346883 758 264 296 C09HBa0168F14.3 116478 53101 53133 1 32, 264, 53101,