The mapping beetween Affymetrix Tomato Genome Array probes and ITAG2.3 cDNA sequences was performed using bwa and filtered using a simple Linux script to retrieve the mapped sequences. The probes correspond to the Affymetrix Tomato Genome Array described at GEO as http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL4741. There are 5 different files: + A-AFFY-87_AffyGeneChipTomatoGenome.singlemapped_probes.txt, list of composite elements (probe clusters) that map uniquely with one ITAG2.3 cDNA sequence. + A-AFFY-87_AffyGeneChipTomatoGenome.multimapped_probes.txt, list of composite elements (probe clusters) that map with more than one ITAG2.3 cDNA sequence. + A-AFFY-87_AffyGeneChipTomatoGenome.probes_ITAG2.3cDNA_mapping.txt list of probes with its corresponding loci + A-AFFY-87_AffyGeneChipTomatoGenome.compositeelements_ITAG2.3cDNA_mapping.txt list of composite elements with its corresponding loci. + A-AFFY-87_AffyGeneChipTomatoGenome.probes_ITAG2.3genome_mapping.gff3 probe mapping file in GFF3 format using the S.lycopersicum genome ITAG2.3 (ITAG2.3_genomic.fasta) as reference.