#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119251	12	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2333747	15	N	50000	contig	no	
S.lycopersicum-chr2	2333748	2455506	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455507	2505506	17	N	50000	contig	no	
S.lycopersicum-chr2	2505507	2640055	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640056	3300000	19	N	659945	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	22	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	23	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	24	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	25	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	26	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	27	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4245335	28	F	C02HBa0162I09.2	1	123184	-
S.lycopersicum-chr2	4245336	4369986	29	F	C02HBa0027B01.1	10001	134651	+
S.lycopersicum-chr2	4369987	4419986	30	N	50000	contig	no	
S.lycopersicum-chr2	4419987	4527318	31	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4527319	4600000	32	N	72682	contig	no	
S.lycopersicum-chr2	4600001	4720940	33	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	34	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	35	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	36	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	37	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	38	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	39	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	40	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	41	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	42	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	43	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836427	44	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836428	7886427	45	N	50000	contig	no	
S.lycopersicum-chr2	7886428	8066297	46	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066298	8116297	47	N	50000	contig	no	
S.lycopersicum-chr2	8116298	8272187	48	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8272188	8384171	49	F	C02HBa0111M05.1	32722	144705	+
S.lycopersicum-chr2	8384172	8407860	50	F	C02HBa0175O20.1	122540	146228	-
S.lycopersicum-chr2	8407861	8457860	51	N	50000	contig	no	
S.lycopersicum-chr2	8457861	8539259	52	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8539260	8601894	53	F	C02SLm0073G04.1	26451	89085	-
S.lycopersicum-chr2	8601895	8651894	54	N	50000	contig	no	
S.lycopersicum-chr2	8651895	8791827	55	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8791828	8841827	56	N	50000	contig	no	
S.lycopersicum-chr2	8841828	8977622	57	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8977623	9056971	58	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	9056972	9106971	59	N	50000	contig	no	
S.lycopersicum-chr2	9106972	9243210	60	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9243211	9293210	61	N	50000	contig	no	
S.lycopersicum-chr2	9293211	9443636	62	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9443637	9493636	63	N	50000	clone	yes	
S.lycopersicum-chr2	9493637	9623233	64	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9623234	9673233	65	N	50000	contig	no	
S.lycopersicum-chr2	9673234	9785307	66	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9785308	9835307	67	N	50000	contig	no	
S.lycopersicum-chr2	9835308	9880891	68	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9880892	9930891	69	N	50000	contig	no	
S.lycopersicum-chr2	9930892	10066183	70	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	10066184	10116183	71	N	50000	clone	yes	
S.lycopersicum-chr2	10116184	10221491	72	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10221492	10312860	73	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10312861	10362860	74	N	50000	clone	yes	
S.lycopersicum-chr2	10362861	10400424	75	F	C02SLm0097L01.2	1	37564	+
S.lycopersicum-chr2	10400425	10570215	76	F	C02SLm0128E12.1	10114	179904	-
S.lycopersicum-chr2	10570216	10620215	77	N	50000	clone	yes	
S.lycopersicum-chr2	10620216	10721987	78	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10721988	10779674	79	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10779675	10871638	80	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10871639	10921638	81	N	50000	contig	no	
S.lycopersicum-chr2	10921639	11035367	82	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	11035368	11085367	83	N	50000	contig	no	
S.lycopersicum-chr2	11085368	11197411	84	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	11197412	11266661	85	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	11266662	11393938	86	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11393939	11443938	87	N	50000	contig	no	
S.lycopersicum-chr2	11443939	11646956	88	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11646957	11696956	89	N	50000	clone	yes	
S.lycopersicum-chr2	11696957	11832787	90	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11832788	11882787	91	N	50000	clone	yes	
S.lycopersicum-chr2	11882788	12014563	92	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	12014564	12080676	93	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	12080677	12130676	94	N	50000	clone	yes	
S.lycopersicum-chr2	12130677	12227827	95	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	12227828	12322861	96	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	12322862	12408479	97	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12408480	12485003	98	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12485004	12535003	99	N	50000	contig	no	
S.lycopersicum-chr2	12535004	12622666	100	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12622667	12672666	101	N	50000	clone	yes	
S.lycopersicum-chr2	12672667	12815468	102	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12815469	12865468	103	N	50000	contig	no	
S.lycopersicum-chr2	12865469	13001045	104	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	13001046	13051045	105	N	50000	contig	no	
S.lycopersicum-chr2	13051046	13158778	106	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	13158779	13212255	107	F	C02HBa0111M10.2	54012	107488	+
S.lycopersicum-chr2	13212256	13274064	108	F	C02HBa0008G02.1	85198	147006	-
S.lycopersicum-chr2	13274065	13322288	109	F	C02SLm0066K03.2	74853	123076	-
S.lycopersicum-chr2	13322289	13437178	110	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	13437179	13487178	111	N	50000	contig	no	
S.lycopersicum-chr2	13487179	13544502	112	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13544503	13594502	113	N	50000	contig	no	
S.lycopersicum-chr2	13594503	13725523	114	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13725524	13950000	115	N	224477	contig	no	
S.lycopersicum-chr2	13950001	14082204	116	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	117	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	118	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	119	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447457	120	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447458	14497457	121	N	50000	contig	no	
S.lycopersicum-chr2	14497458	14610759	122	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610760	14660759	123	N	50000	clone	yes	
S.lycopersicum-chr2	14660760	14811187	124	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811188	60000000	125	N	45188813	contig	no	
S.lycopersicum-chr2	60000001	60119501	126	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	60119502	60169501	127	N	50000	contig	no	
S.lycopersicum-chr2	60169502	60244634	128	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	60244635	60294634	129	N	50000	contig	no	
S.lycopersicum-chr2	60294635	60386213	130	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	60386214	60436213	131	N	50000	contig	no	
S.lycopersicum-chr2	60436214	60546412	132	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	60546413	60596412	133	N	50000	contig	no	
S.lycopersicum-chr2	60596413	60707928	134	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	60707929	60757928	135	N	50000	contig	no	
S.lycopersicum-chr2	60757929	60903848	136	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	60903849	60953848	137	N	50000	contig	no	
S.lycopersicum-chr2	60953849	61044527	138	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	61044528	61094527	139	N	50000	contig	no	
S.lycopersicum-chr2	61094528	61203314	140	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	61203315	61253314	141	N	50000	contig	no	
S.lycopersicum-chr2	61253315	61325571	142	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	61325572	61375571	143	N	50000	contig	no	
S.lycopersicum-chr2	61375572	61437736	144	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	61437737	61487736	145	N	50000	contig	no	
S.lycopersicum-chr2	61487737	61571067	146	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	61571068	61621067	147	N	50000	contig	no	
S.lycopersicum-chr2	61621068	61712418	148	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	61712419	61762418	149	N	50000	contig	no	
S.lycopersicum-chr2	61762419	61904723	150	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	61904724	61954723	151	N	50000	contig	no	
S.lycopersicum-chr2	61954724	62079155	152	F	C02SLm0100F12.1	1	124432	+
S.lycopersicum-chr2	62079156	62129155	153	N	50000	contig	no	
S.lycopersicum-chr2	62129156	62257909	154	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	62257910	62307909	155	N	50000	contig	no	
S.lycopersicum-chr2	62307910	62346776	156	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	62346777	62396776	157	N	50000	contig	no	
S.lycopersicum-chr2	62396777	62468171	158	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	62468172	62518171	159	N	50000	contig	no	
S.lycopersicum-chr2	62518172	62633454	160	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	62633455	62683454	161	N	50000	contig	no	
S.lycopersicum-chr2	62683455	62773248	162	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	62773249	62823248	163	N	50000	contig	no	
S.lycopersicum-chr2	62823249	62933307	164	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	62933308	62983307	165	N	50000	contig	no	
S.lycopersicum-chr2	62983308	63016926	166	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	63016927	63066926	167	N	50000	contig	no	
S.lycopersicum-chr2	63066927	63191662	168	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	63191663	63241662	169	N	50000	contig	no	
S.lycopersicum-chr2	63241663	63329494	170	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	63329495	63379494	171	N	50000	contig	no	
S.lycopersicum-chr2	63379495	63446899	172	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	63446900	63496899	173	N	50000	contig	no	
S.lycopersicum-chr2	63496900	63594949	174	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	63594950	63644949	175	N	50000	contig	no	
S.lycopersicum-chr2	63644950	63769430	176	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	63769431	63819430	177	N	50000	contig	no	
S.lycopersicum-chr2	63819431	63959698	178	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	63959699	64009698	179	N	50000	contig	no	
S.lycopersicum-chr2	64009699	64132373	180	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	64132374	64182373	181	N	50000	contig	no	
S.lycopersicum-chr2	64182374	64295165	182	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	64295166	64345165	183	N	50000	contig	no	
S.lycopersicum-chr2	64345166	64455846	184	F	C02HBa0030E13.1	1	110681	+
S.lycopersicum-chr2	64455847	64505846	185	N	50000	contig	no	
S.lycopersicum-chr2	64505847	64589877	186	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	64589878	64639877	187	N	50000	contig	no	
S.lycopersicum-chr2	64639878	64754637	188	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	64754638	64804637	189	N	50000	contig	no	
S.lycopersicum-chr2	64804638	64955799	190	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	64955800	65005799	191	N	50000	contig	no	
S.lycopersicum-chr2	65005800	65123528	192	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	65123529	65173528	193	N	50000	contig	no	
S.lycopersicum-chr2	65173529	65272020	194	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	65272021	65427235	195	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	65427236	65477235	196	N	50000	contig	no	
S.lycopersicum-chr2	65477236	65592827	197	F	C02HBa0155D20.2	1	115592	+
S.lycopersicum-chr2	65592828	65683797	198	F	C02SLe0053H21.1	56227	147196	-
S.lycopersicum-chr2	65683798	65733797	199	N	50000	contig	no	
S.lycopersicum-chr2	65733798	65872577	200	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	65872578	65904983	201	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	65904984	65954983	202	N	50000	clone	yes	
S.lycopersicum-chr2	65954984	66049493	203	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	66049494	66159566	204	F	C02HBa0059M17.2	4964	115036	+