#Draft Tomato chromosome 9
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr9	1	1300000	1	N	1300000	contig	no	
S.lycopersicum-chr9	1300001	1344036	2	F	C09SLe0019J03.3	1	44036	+
S.lycopersicum-chr9	1344037	1400000	3	N	55964	contig	no	
S.lycopersicum-chr9	1400001	1509872	4	F	C09HBa0116C14.2	1	109872	+
S.lycopersicum-chr9	1509873	2300000	5	N	790128	contig	no	
S.lycopersicum-chr9	2300001	2411868	6	F	C09HBa0203J14.1	1	111868	+
S.lycopersicum-chr9	2411869	3750000	7	N	1338132	contig	no	
S.lycopersicum-chr9	3750001	3866478	8	F	C09HBa0168F14.3	1	116478	+
S.lycopersicum-chr9	3866479	5560000	9	N	1693522	contig	no	
S.lycopersicum-chr9	5560001	5686955	10	F	C09SLm0094A22.1	1	126955	+
S.lycopersicum-chr9	5686956	6000000	11	N	313045	contig	no	
S.lycopersicum-chr9	6000001	6125286	12	F	C09HBa0099P03.2	1	125286	+
S.lycopersicum-chr9	6125287	10700000	13	N	4574714	contig	no	
S.lycopersicum-chr9	10700001	10811462	14	F	C09HBa0165P17.1	1	111462	+
S.lycopersicum-chr9	10811463	11050000	15	N	238538	contig	no	
S.lycopersicum-chr9	11050001	11164526	16	F	C09HBa0109D11.1	1	114526	+
S.lycopersicum-chr9	11164527	11187593	17	F	C09HBa0226D21.1	90515	113581	+
S.lycopersicum-chr9	11187594	11210653	18	F	C09SLf0060H24.1	16346	39405	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr9	11210654	60000000	19	N	48789347	contig	no	
S.lycopersicum-chr9	60000001	60057577	20	F	C09HBa0194K19.1	1	57577	+
S.lycopersicum-chr9	60057578	60107577	21	N	50000	contig	no	
S.lycopersicum-chr9	60107578	60177945	22	F	C09SLm0006M22.1	1	70368	+
S.lycopersicum-chr9	60177946	60227945	23	N	50000	contig	no	
S.lycopersicum-chr9	60227946	60328384	24	F	C09SLe0085A10.1	1	100439	+
S.lycopersicum-chr9	60328385	60378384	25	N	50000	contig	no	
S.lycopersicum-chr9	60378385	60479194	26	F	C09HBa0047I13.1	1	100810	+
S.lycopersicum-chr9	60479195	60529194	27	N	50000	contig	no	
S.lycopersicum-chr9	60529195	60620030	28	F	C09SLe0103M07.1	1	90836	+
S.lycopersicum-chr9	60620031	60670030	29	N	50000	contig	no	
S.lycopersicum-chr9	60670031	60704243	30	F	C09SLf0096M01.1	1	34213	+
S.lycopersicum-chr9	60704244	60754243	31	N	50000	contig	no	
S.lycopersicum-chr9	60754244	60863265	32	F	C09HBa0037P10.1	1	109022	+
S.lycopersicum-chr9	60863266	60913265	33	N	50000	contig	no	
S.lycopersicum-chr9	60913266	61043949	34	F	C09HBa0179M08.1	1	130684	+
S.lycopersicum-chr9	61043950	61093949	35	N	50000	contig	no	
S.lycopersicum-chr9	61093950	61134873	36	F	C09HBa0142I14.1	1	40924	+
S.lycopersicum-chr9	61134874	61184873	37	N	50000	contig	no	
S.lycopersicum-chr9	61184874	61336192	38	F	C09HBa0067J16.1	1	151319	+
S.lycopersicum-chr9	61336193	61386192	39	N	50000	contig	no	
S.lycopersicum-chr9	61386193	61515299	40	F	C09HBa0135N15.1	1	129107	+
S.lycopersicum-chr9	61515300	61565299	41	N	50000	contig	no	
S.lycopersicum-chr9	61565300	61684284	42	F	C09HBa0166O16.1	1	118985	-
S.lycopersicum-chr9	61684285	61776286	43	F	C09HBa0043M08.1	29738	121739	+
S.lycopersicum-chr9	61776287	61826286	44	N	50000	contig	no	
S.lycopersicum-chr9	61826287	61951542	45	F	C09SLe0066M20.2	1	125256	-
S.lycopersicum-chr9	61951543	62052398	46	F	C09HBa0130D14.1	3000	103855	+
S.lycopersicum-chr9	62052399	62102398	47	N	50000	contig	no	
S.lycopersicum-chr9	62102399	62204772	48	F	C09HBa0080D01.1	1	102374	+
S.lycopersicum-chr9	62204773	62318518	49	F	C09HBa0170H21.1	14707	128452	-