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html5 =
html6 =
### defaults examples sub, works for any of them
examples=sub
{
my ($dbgff) = @_;
if($dbgff && $dbgff->can('features_db') ) {
my $dbh = $dbgff->features_db;
my $examples = $dbh->selectall_arrayref('select fref,seqlen from fdata join (select fref,max(foffset) as seqlen from fdna group by fref having max(foffset) <=500000 order by seqlen desc limit 70) as lens using(fref) group by fref,seqlen order by seqlen desc limit 4 offset 2');
return map $_->[0],@$examples
} else {
return ();
}
}
### DAS CONFIGURATION ####
das mapmaster = SELF
default features =
aggregators =
# "automatic" classes to try when an unqualified identifier is given
automatic classes = Sequence clone match nucleotide_motif
### TRACK CONFIGURATION ####
# the remainder of the sections configure individual tracks
#track to show DNA and GC content
[peptides]
glyph = protein
global feature = 1
height = 40
do_gc = 1
fgcolor = red
category = General
axis_color = blue
strand = both
key = Peptides/KD Plot
citation = This track displays a Kyte-Doolittle hydropathy plot of the protein sequence at low magnifications and the peptide sequence itself at higher magnifications.
[blastp_trembl]
feature = match:ITAG_blastp_trembl
key = TrEMBL
category = Similarity
glyph = segments
stranded = 1
citation = This track shows similarities with sequences in TrEMBL (see