FGENESH 2.4 Prediction of potential genes in Tomato genomic DNA Time : Tue Oct 16 16:44:14 2007 Seq name: C04SLm0121I03.1 CU457805.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0121I03 Length of sequence: 41082 Number of predicted genes 12 in +chain 4 in -chain 8 Number of predicted exons 37 in +chain 8 in -chain 29 Positions of predicted genes and exons: Variant 1 from 1, Score:617.904492 G Str Feature Start End Score ORF Len 1 + 1 CDSi 169 - 220 3.23 170 - 220 51 1 + 2 CDSi 402 - 529 18.77 402 - 527 126 1 + 3 CDSl 577 - 898 6.63 578 - 898 321 1 + PolA 1786 1.61 2 - PolA 2779 1.61 2 - 1 CDSl 2917 - 3179 3.64 2917 - 3177 261 2 - 2 CDSf 4443 - 4584 9.86 4444 - 4584 141 3 - PolA 4607 -3.59 3 - 1 CDSl 4646 - 4807 14.81 4646 - 4807 162 3 - 2 CDSi 5518 - 5536 2.84 5518 - 5535 18 3 - 3 CDSf 5753 - 5760 2.00 5755 - 5760 6 4 + 1 CDSf 5784 - 5961 7.53 5784 - 5960 177 4 + 2 CDSl 6143 - 6381 8.63 6145 - 6381 237 4 + PolA 6959 -0.59 5 - PolA 8801 1.61 5 - 1 CDSl 9619 - 9900 45.06 9619 - 9900 282 5 - 2 CDSi 10858 - 11004 27.57 10858 - 11004 147 5 - 3 CDSi 11403 - 11695 32.11 11403 - 11693 291 5 - 4 CDSi 12946 - 13006 8.94 12947 - 13006 60 5 - 5 CDSi 13175 - 13365 20.31 13175 - 13363 189 5 - 6 CDSf 13401 - 13596 -0.35 13402 - 13596 195 6 - PolA 19525 1.61 6 - 1 CDSl 19542 - 19623 -1.40 19542 - 19622 81 6 - 2 CDSf 20208 - 20287 11.35 20210 - 20287 78 7 - PolA 23043 1.61 7 - 1 CDSl 23090 - 23101 1.12 23090 - 23101 12 7 - 2 CDSi 24002 - 24214 22.28 24002 - 24214 213 7 - 3 CDSf 24931 - 24936 -2.90 24931 - 24936 6 8 + 1 CDSo 24966 - 26222 182.75 24966 - 26222 1257 8 + PolA 26576 1.61 9 + 1 CDSf 26614 - 26646 3.08 26614 - 26646 33 9 + 2 CDSl 27120 - 27356 12.62 27120 - 27356 237 9 + PolA 27473 -4.79 10 - PolA 27586 -0.59 10 - 1 CDSl 27632 - 27639 -5.85 27632 - 27637 6 10 - 2 CDSi 27861 - 27920 9.86 27862 - 27918 57 10 - 3 CDSi 27968 - 28209 1.54 27969 - 28208 240 10 - 4 CDSi 28246 - 28468 28.89 28248 - 28466 219 10 - 5 CDSi 29709 - 29943 18.46 29710 - 29943 234 10 - 6 CDSf 30263 - 30484 0.05 30263 - 30484 222 11 - PolA 30499 1.61 11 - 1 CDSl 30816 - 31019 25.32 30816 - 31019 204 11 - 2 CDSf 31322 - 31687 33.34 31322 - 31687 366 12 - PolA 32226 1.61 12 - 1 CDSl 32518 - 32748 35.10 32518 - 32748 231 12 - 2 CDSi 32839 - 32931 15.01 32839 - 32931 93 12 - 3 CDSi 33472 - 33618 34.68 33472 - 33618 147 12 - 4 CDSi 33749 - 33835 21.10 33749 - 33835 87 12 - 5 CDSf 35559 - 35768 15.02 35559 - 35768 210 Predicted protein(s): >FGENESH: 1 3 exon (s) 169 - 898 166 aa, chain + LLNPSTFAGWFGRSLFHAIVVFVITIHAYAFEKSEMEEASMVALSGCIWLQAFVVALETN PQSLSRKEDPGCHRLTDNKGSFIKVWNLIGPWFVSGIYLVLGFWLIFKLMSVSCQHPRGM FENITLFPIKRTTKSDIKKREKCFTIVVATLQFLVASTSGISLSDF >FGENESH: 2 2 exon (s) 2917 - 4584 134 aa, chain - MAMGRAGVGSRLCGVAGWTGLRLCGAGGTSGRLNGFSKTNAAQIAGAVAQHLSRITITKE PAPNHYFENIWLQEICLTDLTAVTFSIRSGNKNFSTSFYNQNPPSYFPACLPKTILGTFY FLYISVVRSLLLVH >FGENESH: 3 3 exon (s) 4646 - 5760 62 aa, chain - MGRRIDFQKAGGWEGTDNPIDDIKSNKISPYRNVLQYCERTVNIEANLVPWNFKTSIAYY HT >FGENESH: 4 2 exon (s) 5784 - 6381 138 aa, chain + MGPVLALKYFRYTYRSSKINILQQAERMGGPILSLGNIEPQLRSLDKDVAPLSISQPKNQ KDTTLRTLTADAFFSTGQHLNLFSMLRGLVLHQADNIMLRGHCILEAYAVKIRTDYCSQG MKMQQPSTILILVYWRKQ >FGENESH: 5 6 exon (s) 9619 - 13596 389 aa, chain - MIHFESYEKREKAKTGRSGLVPLLIELVEINFIILKKQKTEENFTKNDSSYAPKNSILML PSLLFNRRKEMLMIQSTISLPLQKSVLVPAKIATSGSKNGCFLDLNGRCGSKSASYHFPR RPIKGNSIQLKIYARKSESLPILLSEKVDELPEMLLNGGDITISSGEILSLSAFSCGSIF WLTSGQVALASEGVRVNMVYEVGELFELGIQLTYLLLLLALLGVGSFFVIRQVLVRRELD LSAKELQEQVRSGDASATELFELGAVMLRRKFYPAATKYLLQAVEKWDGDDQDLAQVYNA LGVSYVLDGKIDKGIAQFENAVKVQPGYVTAWNNLGDAYEKTKDLTSALNAFEEVLLFDP NNKIARPRRDALKDKVTMYKGVSVKSKKS >FGENESH: 6 2 exon (s) 19542 - 20287 53 aa, chain - MTLIFHSDDAVSEATHIEPFQVVSIFSLLAAFQSNPLEKWTLKSSSQNPYKSP >FGENESH: 7 3 exon (s) 23090 - 24936 76 aa, chain - MNETFEISNLEEQNAEGIEDSLEDIESNMNAVVSFVPQLGEQELREPYIGMEFQSLDTGF KFYLDYAHRNGFSQKH >FGENESH: 8 1 exon (s) 24966 - 26222 418 aa, chain + MSSMKVGGNTLPVTVDEHGHVRYDTIARQAENSQKIVYCHYNDLVPKFVKDHDQDLEQEK KKLIDETTRETKAILLQKIGTQQSWDSMESLKFIKYKPCKQQQGSRLVKMVEKAVDPMEP PKFKHKKVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAA DGSRGIDEVKINDDFPKLAEALYVATEKATEAIAMRSKVQREIILKEMELQELARNARAE IAAGLKNDGDDYEGRLWREKISKERHQERRLLEAKEGAAMKRRKIKTRDGDRDISEKVAL GMASTSRGCGEATMYDQRLFNQEKGIDSGFAADDAYNLYDNILFTAQCTLYRPKKDVDCD TYGEQQQEKITHSKPDNAFAGTSERTDPRDRPVEFEADPFGLDQFMTGVKNNMANYGN >FGENESH: 9 2 exon (s) 26614 - 27356 89 aa, chain + MKVKEERLRRKSGSSDQIFWLSSVIVYWFSLILLLKHQDLCSSGCRAYIITYTLHKTEHQ ALENLNNMKFISFSVPLQGVHVFTLFSSS >FGENESH: 10 6 exon (s) 27632 - 30484 329 aa, chain - MEQSIPASFLSREQFLRPINVISALSLGENTYRHTTLLTTRNSKLQPVAYISQYSPYDIF DLIFSCYLVHLLPQVVKIESHEADDVIATLVEQVLQRGHRVVVASPDKDFKQLISDDVQI VMPVPEFNRWSFYTLKHYVAQYNCDPRSDLSLRCILGDEVDGVPGIQHVVPGFGRKTALK LLKKHGTLENLLNAASVRSVGRQYAQDALIKYADYLRRNYEVLSLKSKRVIQYPSPFHSF LLLTIVNGMTLKGMSVSILRSNGLMRGMRVMTHLFYPTSSLRWKTVGILIWKRDRIPLVE IARRKHFSLTEWHIKYLLDSKDGKMSKEH >FGENESH: 11 2 exon (s) 30816 - 31687 189 aa, chain - MEIQQFSPFTITPCHFHPIPNSNHHPVLVSPLKQQRNLLKLSPLFCSSSHSNPVVQDPIL QQGNGSLGKSRDTHYKNSRKKRVFFLDVNPICYKGSIPSLQSFAHWISIFFSQVSLTDPV IAVIDGERGNEYRRQLLPSYKASRRKYWHQLQGAVKSPRSTIERSHRLILDVLQSCNVPV SEQFLHQYL >FGENESH: 12 5 exon (s) 32518 - 35768 255 aa, chain - MACGDDDKLCLDSIRKSLIRQEDTIIFNLIERIKFPINPTLYKQQLPPPSNFSGSLFQYL FQETESLQSKVGRYLAPEENPFFPDNLSDSIIPLTKCTPVLHPAAESVNVNEKILDIYIN QMLPLFCTEVNDDANFATTAACDIQLLQALSRRIHYGKFVAEVKFRDSIDEYKPFILAQD RDALMKLLTFEAVEEMVKKRVAKKAKVFGQEVSLNDNAEEVKGKIDPLLVSRLYDEWVMP LTKLVEVEYLLRRLD