GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 20:08:39 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-lfB6K/C04HBa0127E11/C04HBa0127E11.seq.screen ________________________________________________________________________________ Sequence 1: C04HBa0127E11.1, from 1 to 95845, both strands analyzed. ... started at: Mon Aug 28 20:36:55 2006 EST library file: /tmp/cxgn-bacpublish-resources-rY9f4u/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 54 EST library file: /tmp/cxgn-bacpublish-resources-rY9f4u/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 103 ******************************************************************************** EST sequence 53 -strand 703 n (File: SGN-E369678-) 1 GCTCTTGCAC AAGTTCTGGG TTGAATGAAA TTTCTGAGGA GGCAGATAGT TTTCATCAGC 61 TTGAACATGT CATGGAACGG TTGGATGTAA GAACAAAGCT ACGGATAAGG GATAGCTTGT 121 ATCGGTTGGC TCAGAGTGCT GAACAAAGGC TTAGACATGC TAATCTCAAT AATGGATCTG 181 GTGATGATAG TCACACAAGC AGAGCATTTG ATGATGATGG AGCATACAGA TGCACAGGAT 241 ATTTGGACAC GGAGACAGAC ACTAACTCTA TAGATCGATC TATTGCTCAC TTACTCTTCC 301 ACAGGCCTTC AAACTCATCA GTGATGGCTG ATTCTTTGGC TTTGGAGTCA CCTTCCACGA 361 TTTTCGAGAC ATTACTCAGC CCACCAATGA TTGATGAGAA CTTGATTTCT GCTGGAGAAA 421 ATGCAGCCGA ACCAGATAAA GGCACGAAAT ATTAAACAGG CTTCTATACA AATGGGTTGT 481 GTTTATTTCA ATTTATGTCG CATGGACTCG CCTACATGTA TGTGCATGTA AGTATCTGCT 541 ATGGATACTT ATATACTCTT TTGTTGTTTA GTGTAATTCG AAGAATCTAA ACAGTATGAG 601 AATGAGGATC TATGTCAAAT AGCTTACAGT TACTCGTGTG TTTGTGTATG AGAATTATCA 661 AGAATCTCAA ATGAGAAATT ATTTCATGTA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 5642 to 2298): Exon 1 5032 4953 ( 80 n); cDNA 1 80 ( 80 n); score: 1.000 Intron 1 4952 3991 ( 962 n); Pd: 0.994 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 3990 3842 ( 149 n); cDNA 81 229 ( 149 n); score: 1.000 Intron 2 3841 3564 ( 278 n); Pd: 0.986 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 3563 3434 ( 130 n); cDNA 230 359 ( 130 n); score: 1.000 Intron 3 3433 3350 ( 84 n); Pd: 0.930 (s: 1.00), Pa: 0.814 (s: 1.00) Exon 4 3349 3011 ( 339 n); cDNA 360 698 ( 339 n); score: 0.991 MATCH C04HBa0127E11.1- SGN-E369678- 0.996 698 0.993 C PGS_C04HBa0127E11.1-_SGN-E369678- (5032 4953,3990 3842,3563 3434,3349 3011) Alignment (genomic DNA sequence = upper lines): GCTCTTGCAC AAGTTCTGGG TTGAATGAAA TTTCTGAGGA GGCAGATAGT TTTCATCAGC 4973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTTGCAC AAGTTCTGGG TTGAATGAAA TTTCTGAGGA GGCAGATAGT TTTCATCAGC 60 TTGAACATGT CATGGAACGG GTATAAAATC TCAATGAAAA CTAATATGCA TTTTTGATAT 4913 |||||||||| |||||||||| TTGAACATGT CATGGAACGG .......... .......... .......... .......... 80 TGTTTGGTGA TGAGTTTCAT CAAGGTTTGT TTTAAGTGAG TGATTTGACT AAACAAATTT 4853 .......... .......... .......... .......... .......... .......... 80 GGCACACCTT ATTTGTGTAG GTCAATAGCT CAAACGACAT GTGCAATGCT TTTAGATGGT 4793 .......... .......... .......... .......... .......... .......... 80 TCTCAGCTGG ATTAAGATAG TTTTTTAGTC GAGGGACAAT ATTAATGACA AACATATTAT 4733 .......... .......... .......... .......... .......... .......... 80 ACAAATTCCT ATATTCTGGG AAGGTTAATG ATGTGCAGCT ACACACTCTT GTAGCTTCAC 4673 .......... .......... .......... .......... .......... .......... 80 GCAGTCATAG AGAACTATTC TATTTTGTCA GGAAGTTGTC ACACAGCATG CTGTAGCATT 4613 .......... .......... .......... .......... .......... .......... 80 GTGCATACAT CTGACTTTTT CTAACCATTC TAAATTAGAG ATCTTTGTTA TTTAATTGAG 4553 .......... .......... .......... .......... .......... .......... 80 ACATGTGAAG ATGCTGAGTA AATAGGAACT CATTTGGTCC TCTTATTCAT TATTTATATT 4493 .......... .......... .......... .......... .......... .......... 80 TATACAGATC ACATATTAAA TTATTTTTTG TGTTAGAATA ATTCATATTA GTGATGGCGT 4433 .......... .......... .......... .......... .......... .......... 80 TTTACTAAGA CTTATTTAGA AAAATCTTTG TTCATGTATA TCTATAGTAA CCTATATCAT 4373 .......... .......... .......... .......... .......... .......... 80 ACTATTGCCT ATAGCTACAG AATATAGATA TAGAAAAGAG TATTTGTCTC TTAGTGCATG 4313 .......... .......... .......... .......... .......... .......... 80 TTTGTGTTGC AGATAGCAAT GCAGAGAGCT GATTGCTTAT TTAGTACAAC AGACAGCCTT 4253 .......... .......... .......... .......... .......... .......... 80 AATATAAAAG CTGTTCCTCA TCATCTTGCT GCTTGCTTAT TTTAAATTAT TAATCAGCGG 4193 .......... .......... .......... .......... .......... .......... 80 ATGTGCAAAA GCCTTCCAAA GTCTGACTTA TCGTTGAGTG TCTTGAAACT ATCTTTGTGT 4133 .......... .......... .......... .......... .......... .......... 80 TAATCCTGTA AACTTGGGCT AGGAAGGGGC AGTTAGCAGA TTTGGTATGT GGTTCTTCAA 4073 .......... .......... .......... .......... .......... .......... 80 GTTTATACAT TTAGTTGGAA ATCAACTTTC TTTTCAGTAC ATGCATGTTT GTTAGCTCAC 4013 .......... .......... .......... .......... .......... .......... 80 TCTGTTGAGC CTTCTGGTTT AGTTGGATGT AAGAACAAAG CTACGGATAA GGGATAGCTT 3953 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TTGGATGT AAGAACAAAG CTACGGATAA GGGATAGCTT 118 GTATCGGTTG GCTCAGAGTG CTGAACAAAG GCTTAGACAT GCTAATCTCA ATAATGGATC 3893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCGGTTG GCTCAGAGTG CTGAACAAAG GCTTAGACAT GCTAATCTCA ATAATGGATC 178 TGGTGATGAT AGTCACACAA GCAGAGCATT TGATGATGAT GGAGCATACA GGTTGGTATC 3833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGGTGATGAT AGTCACACAA GCAGAGCATT TGATGATGAT GGAGCATACA G......... 229 GTTTCTTGAT GCCTTGGTCT ACATGCATAC TTCCCATATA GGCCGTATCA TAGTTTGCAT 3773 .......... .......... .......... .......... .......... .......... 229 ACTTCAAGCA CACGGTATGT TTGGTTTAGT TAGTGAAGAT CTTATGAAGC ACATTTCTCA 3713 .......... .......... .......... .......... .......... .......... 229 CCCTTCGAGT TTGGAAAGTA AGTAGGTCTA GTCAGTCACA CCTTGAATAA GCACTTTTCT 3653 .......... .......... .......... .......... .......... .......... 229 TTTCTTGATA CCAGTAATCA TACTGGTAAT GTGATAGATT CTGTTGGCTT CCTTTCTGTG 3593 .......... .......... .......... .......... .......... .......... 229 GTCTTAACAT CTATTGGCTT GTTTTTCAGA TGCACAGGAT ATTTGGACAC GGAGACAGAC 3533 | |||||||||| |||||||||| |||||||||| .......... .......... .........A TGCACAGGAT ATTTGGACAC GGAGACAGAC 260 ACTAACTCTA TAGATCGATC TATTGCTCAC TTACTCTTCC ACAGGCCTTC AAACTCATCA 3473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAACTCTA TAGATCGATC TATTGCTCAC TTACTCTTCC ACAGGCCTTC AAACTCATCA 320 GTGATGGCTG ATTCTTTGGC TTTGGAGTCA CCTTCCACGG TAGGTGTTTC TGCATATGCT 3413 |||||||||| |||||||||| |||||||||| ||||||||| GTGATGGCTG ATTCTTTGGC TTTGGAGTCA CCTTCCACG. .......... .......... 359 TCCAAAAATT TCATGTTCAA CACCCTGTAT CTCAAACACA CCCTGCAACT TGTCAATGAA 3353 .......... .......... .......... .......... .......... .......... 359 CAGATTTTCG AGACATTACT CAGCCCACCA ATGATTGATG AGAACTTGAT TTCTGCTGGA 3293 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ATTTTCG AGACATTACT CAGCCCACCA ATGATTGATG AGAACTTGAT TTCTGCTGGA 416 GAAAATGCAG CCGAACCAGA TAAAGGCACG AAATATTAAA CAGGCTTCTA TACAAATGGG 3233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATGCAG CCGAACCAGA TAAAGGCACG AAATATTAAA CAGGCTTCTA TACAAATGGG 476 TTGTGTTTAT TTCAATTTAT GTCGCATGGA CTCGCCTACA TGTATGTGCA TGTAAGTATC 3173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTAT TTCAATTTAT GTCGCATGGA CTCGCCTACA TGTATGTGCA TGTAAGTATC 536 TGCTATGGAT ACTTATATAC TCTTTTGTTG TTTAGTGTAA TTCGAAGAAT CTAAACAGTA 3113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTATGGAT ACTTATATAC TCTTTTGTTG TTTAGTGTAA TTCGAAGAAT CTAAACAGTA 596 TGAGAATGAG GATCTATGTC AAATAGCTTA CAGTTACTCG TGTGTTTGTG TATGAGAATT 3053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAATGAG GATCTATGTC AAATAGCTTA CAGTTACTCG TGTGTTTGTG TATGAGAATT 656 ATCAAGAATC TCAAATGAGA AATTATTTCA TGTAATATAT AA 3011 |||||||||| |||||||||| |||||||||| ||||| | | || ATCAAGAATC TCAAATGAGA AATTATTTCA TGTAAAAAAA AA 698 hqPGS_C04HBa0127E11.1-_SGN-E369678- (5032 4953,3990 3842,3563 3434,3349 3011) ******************************************************************************** EST sequence 52 -strand 447 n (File: SGN-E220147-) 1 TAACTCTATA GTCGAATCTA TTGCTCACTT ACTCTTCCAC AGGCCTTCAA ACTCATCAGT 61 GATGGCTGAT TCTTTGGCTT TGGAGTCACC TTCCACGATT TTCGAGACAT TACTCAGCCC 121 ACCAATGATT GATGAGAACT TGATTTCTGC TGGAGAAAAT GCAGCCGAAC CAGATAAAGG 181 CACGAAATAT TAAACAGGCT TCTATACAAA TGGGTTGTGT TTATTTCAAT TTATGTCGCA 241 TGGACTCGCC TACATGTATG TGCATGTAAG TATCTGCTAT GGATACTTAT ATACTCTTTT 301 GTTGTTTAGT GTAATTCGAA GAATCTAAAC AGTATGAGAA TGAGGATCTA TGTCAAATAG 361 CTTACAGTTA CTCGTGTGTT TGTGTATGAG AATTATCAAG AATCTCAAAT GAGAAATTAT 421 TTCATGTAAT AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 4275 to 2256): Exon 1 3530 3434 ( 97 n); cDNA 1 97 ( 97 n); score: 0.959 Intron 1 3433 3350 ( 84 n); Pd: 0.930 (s: 1.00), Pa: 0.814 (s: 1.00) Exon 2 3349 3017 ( 333 n); cDNA 98 430 ( 333 n); score: 1.000 PPA cDNA 431 447 MATCH C04HBa0127E11.1- SGN-E220147- 0.991 430 0.962 C PGS_C04HBa0127E11.1-_SGN-E220147- (3530 3434,3349 3017) Alignment (genomic DNA sequence = upper lines): TAACTCTATA GATCGATCTA TTGCTCACTT ACTCTTCCAC AGGCCTTCAA ACTCATCAGT 3471 |||||||||| | ||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTCTATA GTCGAATCTA TTGCTCACTT ACTCTTCCAC AGGCCTTCAA ACTCATCAGT 60 GATGGCTGAT TCTTTGGCTT TGGAGTCACC TTCCACGGTA GGTGTTTCTG CATATGCTTC 3411 |||||||||| |||||||||| |||||||||| ||||||| GATGGCTGAT TCTTTGGCTT TGGAGTCACC TTCCACG... .......... .......... 97 CAAAAATTTC ATGTTCAACA CCCTGTATCT CAAACACACC CTGCAACTTG TCAATGAACA 3351 .......... .......... .......... .......... .......... .......... 97 GATTTTCGAG ACATTACTCA GCCCACCAAT GATTGATGAG AACTTGATTT CTGCTGGAGA 3291 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .ATTTTCGAG ACATTACTCA GCCCACCAAT GATTGATGAG AACTTGATTT CTGCTGGAGA 156 AAATGCAGCC GAACCAGATA AAGGCACGAA ATATTAAACA GGCTTCTATA CAAATGGGTT 3231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGCAGCC GAACCAGATA AAGGCACGAA ATATTAAACA GGCTTCTATA CAAATGGGTT 216 GTGTTTATTT CAATTTATGT CGCATGGACT CGCCTACATG TATGTGCATG TAAGTATCTG 3171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTATTT CAATTTATGT CGCATGGACT CGCCTACATG TATGTGCATG TAAGTATCTG 276 CTATGGATAC TTATATACTC TTTTGTTGTT TAGTGTAATT CGAAGAATCT AAACAGTATG 3111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGGATAC TTATATACTC TTTTGTTGTT TAGTGTAATT CGAAGAATCT AAACAGTATG 336 AGAATGAGGA TCTATGTCAA ATAGCTTACA GTTACTCGTG TGTTTGTGTA TGAGAATTAT 3051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATGAGGA TCTATGTCAA ATAGCTTACA GTTACTCGTG TGTTTGTGTA TGAGAATTAT 396 CAAGAATCTC AAATGAGAAA TTATTTCATG TAAT 3017 |||||||||| |||||||||| |||||||||| |||| CAAGAATCTC AAATGAGAAA TTATTTCATG TAAT 430 hqPGS_C04HBa0127E11.1-_SGN-E220147- (3530 3434,3349 3017) ******************************************************************************** EST sequence 112 +strand 436 n (File: SGN-E236057+) 1 GTAAACTTGG GCTAGGAAGG GGCAGTTAGC AGATTTTTTG GATGTAAGAA CAAAGCTACG 61 GATAAGGGAT AGCTTGTATC GGTTGGCTCA GAGTGCTGAA CAAAGGCTTA GACATGCTAA 121 TCTCAATAAT GGATCTGGTG ATGATAGTCA CACAAGCAGA GCATTTGATG ATGATGGAGC 181 ATACAGATGC ACAGGATATT TGGACACGGA GACAGACACT AACTCTATAG ATCGATCTAT 241 TGCTCACTTA CTCTTCCACA GGCCTTCAAA CTCATCAGTG ATGGCTGATT CTTTGGCTTT 301 GGAGTCACCT TCCACGATTT TCGAGACATT TACTCAGCCC ACCAATGATT GATGAGAACT 361 TGATTTCTGC TGGAGAAAAT GCAGCCGAAC CAGATAAAGG CACGAAATAT TAAACAGGCT 421 TCTATACAAA TGGGTT Predicted gene structure (within gDNA segment 4725 to 2621): Exon 1 4125 4089 ( 37 n); cDNA 1 37 ( 37 n); score: 0.973 Intron 1 4088 3991 ( 98 n); Pd: 0.905 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 3990 3842 ( 149 n); cDNA 38 186 ( 149 n); score: 1.000 Intron 2 3841 3564 ( 278 n); Pd: 0.986 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 3563 3434 ( 130 n); cDNA 187 316 ( 130 n); score: 1.000 Intron 3 3433 3350 ( 84 n); Pd: 0.930 (s: 1.00), Pa: 0.814 (s: 0.95) Exon 4 3349 3231 ( 119 n); cDNA 317 436 ( 120 n); score: 0.979 MATCH C04HBa0127E11.1- SGN-E236057+ 0.994 435 0.998 C PGS_C04HBa0127E11.1-_SGN-E236057+ (4125 4089,3990 3842,3563 3434,3349 3231) Alignment (genomic DNA sequence = upper lines): GTAAACTTGG GCTAGGAAGG GGCAGTTAGC AGATTTGGTA TGTGGTTCTT CAAGTTTATA 4066 |||||||||| |||||||||| |||||||||| |||||| GTAAACTTGG GCTAGGAAGG GGCAGTTAGC AGATTTT... .......... .......... 37 CATTTAGTTG GAAATCAACT TTCTTTTCAG TACATGCATG TTTGTTAGCT CACTCTGTTG 4006 .......... .......... .......... .......... .......... .......... 37 AGCCTTCTGG TTTAGTTGGA TGTAAGAACA AAGCTACGGA TAAGGGATAG CTTGTATCGG 3946 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....TTGGA TGTAAGAACA AAGCTACGGA TAAGGGATAG CTTGTATCGG 82 TTGGCTCAGA GTGCTGAACA AAGGCTTAGA CATGCTAATC TCAATAATGG ATCTGGTGAT 3886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTCAGA GTGCTGAACA AAGGCTTAGA CATGCTAATC TCAATAATGG ATCTGGTGAT 142 GATAGTCACA CAAGCAGAGC ATTTGATGAT GATGGAGCAT ACAGGTTGGT ATCGTTTCTT 3826 |||||||||| |||||||||| |||||||||| |||||||||| |||| GATAGTCACA CAAGCAGAGC ATTTGATGAT GATGGAGCAT ACAG...... .......... 186 GATGCCTTGG TCTACATGCA TACTTCCCAT ATAGGCCGTA TCATAGTTTG CATACTTCAA 3766 .......... .......... .......... .......... .......... .......... 186 GCACACGGTA TGTTTGGTTT AGTTAGTGAA GATCTTATGA AGCACATTTC TCACCCTTCG 3706 .......... .......... .......... .......... .......... .......... 186 AGTTTGGAAA GTAAGTAGGT CTAGTCAGTC ACACCTTGAA TAAGCACTTT TCTTTTCTTG 3646 .......... .......... .......... .......... .......... .......... 186 ATACCAGTAA TCATACTGGT AATGTGATAG ATTCTGTTGG CTTCCTTTCT GTGGTCTTAA 3586 .......... .......... .......... .......... .......... .......... 186 CATCTATTGG CTTGTTTTTC AGATGCACAG GATATTTGGA CACGGAGACA GACACTAACT 3526 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..ATGCACAG GATATTTGGA CACGGAGACA GACACTAACT 224 CTATAGATCG ATCTATTGCT CACTTACTCT TCCACAGGCC TTCAAACTCA TCAGTGATGG 3466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATAGATCG ATCTATTGCT CACTTACTCT TCCACAGGCC TTCAAACTCA TCAGTGATGG 284 CTGATTCTTT GGCTTTGGAG TCACCTTCCA CGGTAGGTGT TTCTGCATAT GCTTCCAAAA 3406 |||||||||| |||||||||| |||||||||| || CTGATTCTTT GGCTTTGGAG TCACCTTCCA CG........ .......... .......... 316 ATTTCATGTT CAACACCCTG TATCTCAAAC ACACCCTGCA ACTTGTCAAT GAACAGATTT 3346 |||| .......... .......... .......... .......... .......... ......ATTT 320 TCGAGACA-T TACTCAGCCC ACCAATGATT GATGAGAACT TGATTTCTGC TGGAGAAAAT 3287 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGACATT TACTCAGCCC ACCAATGATT GATGAGAACT TGATTTCTGC TGGAGAAAAT 380 GCAGCCGAAC CAGATAAAGG CACGAAATAT TAAACAGGCT TCTATACAAA TGGGTT 3231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCAGCCGAAC CAGATAAAGG CACGAAATAT TAAACAGGCT TCTATACAAA TGGGTT 436 hqPGS_C04HBa0127E11.1-_SGN-E236057+ (4125 4089,3990 3842,3563 3434,3349 3231) ******************************************************************************** EST sequence 98 +strand 790 n (File: SGN-E214148+) 1 CTCTCACATC CACAGGTATT CAGCAGCACA AGCAAGTTGA TGGATCTGAT TTTGGGTATT 61 TTCAGGATGG CTTTTCTTAC TTATCTTCAG ATTACAGTCA TTCAGATCAG ACTACGGTTT 121 GTCCAACCCT ATCCACAATT AAATCTAAAA AAAGCTGTCT CGTGACTCTT TCTGCTAAGG 181 ACTCCTGTGC GACAAATCAG ATGCAGTTGA TGGAAAGCTT ACCTGATCCT TCTTTTCAGG 241 TGGCTGGTAT AGGAACAAAT GAAAATATGG TGGACAAGCT ACTTCAACGT TCTGTAATTA 301 AGCATGAAAA CAACAGGGAT CTTGAAAGTG TCAGCACGGG AATTCCAGCA GAAGTAGGTT 361 CCTCTATTGT AAAGGAGAGC TCTTGCACAA GTTCTGGGTT GAATGAAATT TCTGAGGAGG 421 CAGATAGTTT TCATCAGCTT GAACATGTCA TGGAACGGTT GGATGTAAGA ACAAAGCTAC 481 GGATAAGGGA TAGCTTGTAT CGGTTGGCTC AGAGTGCTGA ACAAAGGCTT AGACATGCTA 541 ATCTCAATAA TGGATCTGGT GATGATAGTC ACACAAGCAG AGCATTTGAT GATGATGGAG 601 CATACAGATG CACAGGATAT TTGGACACGG AGACAGACAC TAACTCTATA GATCGATCTA 661 TTGCTCACTT ACTCTTCCAC AGGNCTTCAA ACTCATCAGT GATGGCTGAT TCTTTGGGCT 721 TGGAGTCACC TTCACGATTT TCGAGACTTA CTCAGCCCAC CATGATTGAT GAGAACTTGA 781 TTTCTGCTGG Predicted gene structure (within gDNA segment 6010 to 2114): Exon 1 5410 4953 ( 458 n); cDNA 1 458 ( 458 n); score: 1.000 Intron 1 4952 3991 ( 962 n); Pd: 0.994 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 3990 3842 ( 149 n); cDNA 459 607 ( 149 n); score: 1.000 Intron 2 3841 3564 ( 278 n); Pd: 0.986 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 3563 3434 ( 130 n); cDNA 608 736 ( 129 n); score: 0.969 Intron 3 3433 3350 ( 84 n); Pd: 0.930 (s: 0.94), Pa: 0.814 (s: 0.96) Exon 4 3349 3294 ( 56 n); cDNA 737 790 ( 54 n); score: 0.964 MATCH C04HBa0127E11.1- SGN-E214148+ 0.992 793 1.004 C PGS_C04HBa0127E11.1-_SGN-E214148+ (5410 4953,3990 3842,3563 3434,3349 3294) Alignment (genomic DNA sequence = upper lines): CTCTCACATC CACAGGTATT CAGCAGCACA AGCAAGTTGA TGGATCTGAT TTTGGGTATT 5351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCACATC CACAGGTATT CAGCAGCACA AGCAAGTTGA TGGATCTGAT TTTGGGTATT 60 TTCAGGATGG CTTTTCTTAC TTATCTTCAG ATTACAGTCA TTCAGATCAG ACTACGGTTT 5291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGGATGG CTTTTCTTAC TTATCTTCAG ATTACAGTCA TTCAGATCAG ACTACGGTTT 120 GTCCAACCCT ATCCACAATT AAATCTAAAA AAAGCTGTCT CGTGACTCTT TCTGCTAAGG 5231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCAACCCT ATCCACAATT AAATCTAAAA AAAGCTGTCT CGTGACTCTT TCTGCTAAGG 180 ACTCCTGTGC GACAAATCAG ATGCAGTTGA TGGAAAGCTT ACCTGATCCT TCTTTTCAGG 5171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCTGTGC GACAAATCAG ATGCAGTTGA TGGAAAGCTT ACCTGATCCT TCTTTTCAGG 240 TGGCTGGTAT AGGAACAAAT GAAAATATGG TGGACAAGCT ACTTCAACGT TCTGTAATTA 5111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTGGTAT AGGAACAAAT GAAAATATGG TGGACAAGCT ACTTCAACGT TCTGTAATTA 300 AGCATGAAAA CAACAGGGAT CTTGAAAGTG TCAGCACGGG AATTCCAGCA GAAGTAGGTT 5051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATGAAAA CAACAGGGAT CTTGAAAGTG TCAGCACGGG AATTCCAGCA GAAGTAGGTT 360 CCTCTATTGT AAAGGAGAGC TCTTGCACAA GTTCTGGGTT GAATGAAATT TCTGAGGAGG 4991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTATTGT AAAGGAGAGC TCTTGCACAA GTTCTGGGTT GAATGAAATT TCTGAGGAGG 420 CAGATAGTTT TCATCAGCTT GAACATGTCA TGGAACGGGT ATAAAATCTC AATGAAAACT 4931 |||||||||| |||||||||| |||||||||| |||||||| CAGATAGTTT TCATCAGCTT GAACATGTCA TGGAACGG.. .......... .......... 458 AATATGCATT TTTGATATTG TTTGGTGATG AGTTTCATCA AGGTTTGTTT TAAGTGAGTG 4871 .......... .......... .......... .......... .......... .......... 458 ATTTGACTAA ACAAATTTGG CACACCTTAT TTGTGTAGGT CAATAGCTCA AACGACATGT 4811 .......... .......... .......... .......... .......... .......... 458 GCAATGCTTT TAGATGGTTC TCAGCTGGAT TAAGATAGTT TTTTAGTCGA GGGACAATAT 4751 .......... .......... .......... .......... .......... .......... 458 TAATGACAAA CATATTATAC AAATTCCTAT ATTCTGGGAA GGTTAATGAT GTGCAGCTAC 4691 .......... .......... .......... .......... .......... .......... 458 ACACTCTTGT AGCTTCACGC AGTCATAGAG AACTATTCTA TTTTGTCAGG AAGTTGTCAC 4631 .......... .......... .......... .......... .......... .......... 458 ACAGCATGCT GTAGCATTGT GCATACATCT GACTTTTTCT AACCATTCTA AATTAGAGAT 4571 .......... .......... .......... .......... .......... .......... 458 CTTTGTTATT TAATTGAGAC ATGTGAAGAT GCTGAGTAAA TAGGAACTCA TTTGGTCCTC 4511 .......... .......... .......... .......... .......... .......... 458 TTATTCATTA TTTATATTTA TACAGATCAC ATATTAAATT ATTTTTTGTG TTAGAATAAT 4451 .......... .......... .......... .......... .......... .......... 458 TCATATTAGT GATGGCGTTT TACTAAGACT TATTTAGAAA AATCTTTGTT CATGTATATC 4391 .......... .......... .......... .......... .......... .......... 458 TATAGTAACC TATATCATAC TATTGCCTAT AGCTACAGAA TATAGATATA GAAAAGAGTA 4331 .......... .......... .......... .......... .......... .......... 458 TTTGTCTCTT AGTGCATGTT TGTGTTGCAG ATAGCAATGC AGAGAGCTGA TTGCTTATTT 4271 .......... .......... .......... .......... .......... .......... 458 AGTACAACAG ACAGCCTTAA TATAAAAGCT GTTCCTCATC ATCTTGCTGC TTGCTTATTT 4211 .......... .......... .......... .......... .......... .......... 458 TAAATTATTA ATCAGCGGAT GTGCAAAAGC CTTCCAAAGT CTGACTTATC GTTGAGTGTC 4151 .......... .......... .......... .......... .......... .......... 458 TTGAAACTAT CTTTGTGTTA ATCCTGTAAA CTTGGGCTAG GAAGGGGCAG TTAGCAGATT 4091 .......... .......... .......... .......... .......... .......... 458 TGGTATGTGG TTCTTCAAGT TTATACATTT AGTTGGAAAT CAACTTTCTT TTCAGTACAT 4031 .......... .......... .......... .......... .......... .......... 458 GCATGTTTGT TAGCTCACTC TGTTGAGCCT TCTGGTTTAG TTGGATGTAA GAACAAAGCT 3971 |||||||||| |||||||||| .......... .......... .......... .......... TTGGATGTAA GAACAAAGCT 478 ACGGATAAGG GATAGCTTGT ATCGGTTGGC TCAGAGTGCT GAACAAAGGC TTAGACATGC 3911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGATAAGG GATAGCTTGT ATCGGTTGGC TCAGAGTGCT GAACAAAGGC TTAGACATGC 538 TAATCTCAAT AATGGATCTG GTGATGATAG TCACACAAGC AGAGCATTTG ATGATGATGG 3851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCTCAAT AATGGATCTG GTGATGATAG TCACACAAGC AGAGCATTTG ATGATGATGG 598 AGCATACAGG TTGGTATCGT TTCTTGATGC CTTGGTCTAC ATGCATACTT CCCATATAGG 3791 ||||||||| AGCATACAG. .......... .......... .......... .......... .......... 607 CCGTATCATA GTTTGCATAC TTCAAGCACA CGGTATGTTT GGTTTAGTTA GTGAAGATCT 3731 .......... .......... .......... .......... .......... .......... 607 TATGAAGCAC ATTTCTCACC CTTCGAGTTT GGAAAGTAAG TAGGTCTAGT CAGTCACACC 3671 .......... .......... .......... .......... .......... .......... 607 TTGAATAAGC ACTTTTCTTT TCTTGATACC AGTAATCATA CTGGTAATGT GATAGATTCT 3611 .......... .......... .......... .......... .......... .......... 607 GTTGGCTTCC TTTCTGTGGT CTTAACATCT ATTGGCTTGT TTTTCAGATG CACAGGATAT 3551 ||| |||||||||| .......... .......... .......... .......... .......ATG CACAGGATAT 620 TTGGACACGG AGACAGACAC TAACTCTATA GATCGATCTA TTGCTCACTT ACTCTTCCAC 3491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGACACGG AGACAGACAC TAACTCTATA GATCGATCTA TTGCTCACTT ACTCTTCCAC 680 AGGCCTTCAA ACTCATCAGT GATGGCTGAT TCTTTGGCTT TGGAGTCACC TTCCACGGTA 3431 ||| |||||| |||||||||| |||||||||| ||||||| | |||||||||| || |||| AGGNCTTCAA ACTCATCAGT GATGGCTGAT TCTTTGGGCT TGGAGTCACC TT-CACG... 736 GGTGTTTCTG CATATGCTTC CAAAAATTTC ATGTTCAACA CCCTGTATCT CAAACACACC 3371 .......... .......... .......... .......... .......... .......... 736 CTGCAACTTG TCAATGAACA GATTTTCGAG ACATTACTCA GCCCACCAAT GATTGATGAG 3311 ||||||||| || ||||||| ||||||| || |||||||||| .......... .......... .ATTTTCGAG AC-TTACTCA GCCCACC-AT GATTGATGAG 773 AACTTGATTT CTGCTGG 3294 |||||||||| ||||||| AACTTGATTT CTGCTGG 790 hqPGS_C04HBa0127E11.1-_SGN-E214148+ (5410 4953,3990 3842,3563 3434,3349 3294) ******************************************************************************** EST sequence 62 +strand 797 n (File: SGN-E261699+) 1 CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 61 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 121 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 181 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 241 TGCCCATAAA GAAGATTAAT CTTCACAAAA TTAACTCTAA GCTCCAGAAT CAATCTGAGG 301 GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT CAACTATATT GATAGCCTTC 361 CAGAAGAGAG AAACCATCCT ACTGCAATCA CTGGATCTCA GGCTCTCACA TCCACAGGTG 421 GCTGGTATAG GAACAAATGA AAATATGGTG GACAAGCTAC TTCAACGTTC TGTAATTAAG 481 CATGAAAACA ACAGGGATCT TGAAAGTGTC AGCACGGGAA TTCCAGCAGA AGTAGGTTCC 541 TCTATTGTAA AGGAGAGCTC TTGCACAAGT TCTGGGTTGA ATGAAATTTC TGAGGAGGCA 601 GATAGTTTTC ATCAGCTTGA ACATGTCATG GAACGGTTGG ATGTAAGAAC AAAGCTACGG 661 ATAAGGGAAT AGCTTGTATC GGNTTGGCTC AGAGTGCTGA ACAAAGGCTT AGACATGCTA 721 ATCTCAATAA TGGATCTGGT GATGATAGTC ACACAAGCAG AGCATTTGAT GATGATGGAG 781 CATACAGATG CACAGGA Predicted gene structure (within gDNA segment 8473 to 3132): Exon 1 7873 7620 ( 254 n); cDNA 1 254 ( 254 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5558 5396 ( 163 n); cDNA 255 417 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 (s: 1.00), Pa: 0.747 (s: 1.00) Exon 3 5171 4953 ( 219 n); cDNA 418 636 ( 219 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 (s: 1.00), Pa: 0.000 (s: 0.90) Exon 4 3990 3842 ( 149 n); cDNA 637 787 ( 151 n); score: 0.966 Intron 4 3841 3564 ( 278 n); Pd: 0.986 (s: 1.00), Pa: 0.997 (s: 0) Exon 5 3563 3554 ( 10 n); cDNA 788 797 ( 10 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E261699+ 0.994 795 0.997 C PGS_C04HBa0127E11.1-_SGN-E261699+ (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) Alignment (genomic DNA sequence = upper lines): CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 7814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 60 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 7754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 120 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 7694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 180 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 7634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 240 TGCCCATAAA GAAGGTAAAT TATTAATTTA GTGTACATCG GGCTTTCTGT TTAGCCTTTT 7574 |||||||||| |||| TGCCCATAAA GAAG...... .......... .......... .......... .......... 254 ATTCCACCTC AGCTTAACCT TTAAGGTGTT CTATTTGAAG ATTGTTGAAT TCAATGGAGG 7514 .......... .......... .......... .......... .......... .......... 254 GATCAGGTTG AGATTTTGTC TAACATGCAC ACATGAACTA GTGATAGAGT GTTATTGGCG 7454 .......... .......... .......... .......... .......... .......... 254 TTCAGCATGT TCATCTAATT TAAAATCTTA AGCTGATAGA GAGAACACAC TTTTATTTAC 7394 .......... .......... .......... .......... .......... .......... 254 TTAATTATGT TTCCAACATG TCCTTTACAT TTGGACTTGA TTCTTTTTCA TGGGCCAAGC 7334 .......... .......... .......... .......... .......... .......... 254 ATATGTAGAT TCTTTTTTGT TAATGGGTAG CAATGAATTC CAAACCCAGT ACATGTGGCT 7274 .......... .......... .......... .......... .......... .......... 254 GCGGTAATAC CGTGTTGACT CTGTCATCAT CTCATCTAAA AACTCATGTT ATATCTTTCA 7214 .......... .......... .......... .......... .......... .......... 254 TAAGCACTCT TTCTTTTCCA AAATCTTGTC TTAAGCAAGG AAATACATGC ATTGATGAGG 7154 .......... .......... .......... .......... .......... .......... 254 TGCACTGTCG CCGGCACCAA TGGTTTTGAC TCTATTTTTA TGCGTGAAAC TTCTCAAGAA 7094 .......... .......... .......... .......... .......... .......... 254 ACATATATGA ACAAAGTGGC TCCCCTCATG TAAAGGGACA ACTGGGTGCA CTGTTTCATC 7034 .......... .......... .......... .......... .......... .......... 254 TAAGATATTC TGGTAATGAA CACAGTTGAA GCAATTTTTT TCATTTGTTC CTCACCTCAG 6974 .......... .......... .......... .......... .......... .......... 254 TCTGATCTCT GTTTCTTTAG TTTCTTTGTT GTTTCTGATT CTTCACTTGT TTTTACTCTT 6914 .......... .......... .......... .......... .......... .......... 254 TAAAAACAAA TCTTCACAGC AAAATTAGGA AAGGATGACT AGGTGAGCAA TTTGTAGCAC 6854 .......... .......... .......... .......... .......... .......... 254 TTTTTTTTTT TTGAAATGTT CACAATTTTA TATATCAGTG CATAAAAATT GAGCCAACAA 6794 .......... .......... .......... .......... .......... .......... 254 CCATAATTTG AGACATGACA ACCTGATCAA ATACTATCCT ATACACTTAT ATATATTCTA 6734 .......... .......... .......... .......... .......... .......... 254 AACACACTAA GATAGATTCA GTAGCCAGTG TGAGTTCTTT TTTACACAAA CAAAAAAATA 6674 .......... .......... .......... .......... .......... .......... 254 AGAAAAGTGA ATTCATCTTG ATCTACTGAG TCGGACTATC CTTGCTTGAA AGAAATCTCT 6614 .......... .......... .......... .......... .......... .......... 254 GATTCCTTTC CCTACAGACA GACCACCATA TCTGAAATGG TATCCTTTTT CATCTCCTTT 6554 .......... .......... .......... .......... .......... .......... 254 ATGCCTGGGT ATAAGATGAC TCCTCTATTC CGGCATGTCA CTCTTTCCCC TACTCCCCCT 6494 .......... .......... .......... .......... .......... .......... 254 GGCCTCCGCG TCAATTTTTC TTCTAGAAAT GAATCTTTAG AAGCAAAATC ATGAGTTGGT 6434 .......... .......... .......... .......... .......... .......... 254 GAAACAGGGA AAGGTGCTAT TTGCAACATT GTATACACAA ATTTGCCTTC CTTTTTTTCC 6374 .......... .......... .......... .......... .......... .......... 254 ATGTATAAAT GTTACTCTTC TTTGTTTCAT TTTATGTGAT GCAGTTTAAT TGGGCACAAA 6314 .......... .......... .......... .......... .......... .......... 254 ATTTGAAAGG GAGAGTAAGA CTTTTGAAAT TTGTGGTCTA AAACAAGTCT TAGATATCTG 6254 .......... .......... .......... .......... .......... .......... 254 TGTGACTGCG GTAAGATGAG AATTTTAAAG TTAAATACAG AACGACATTA TTGCTTTTGG 6194 .......... .......... .......... .......... .......... .......... 254 GACAACTAAA AACTAAAATG CATCACATAA GTTGGGACAG GTGGAGTAGT TTGGAAAATT 6134 .......... .......... .......... .......... .......... .......... 254 GTAATTTGTA ATCCATCTTT GAAGAACGCA CTTTTTTCTT GTCTTGTTGG TTGGATTATG 6074 .......... .......... .......... .......... .......... .......... 254 GTTCCTGCAT TGAAAATGTA AATTTGTTTC TATTATTGAT TAATGAGGTG TGGTTCGAAC 6014 .......... .......... .......... .......... .......... .......... 254 TGACAACATT TATTTTGCTT GTATTATTGA TACTGATGTG TACTCATGAA TTGGTTGTGA 5954 .......... .......... .......... .......... .......... .......... 254 GTATAGGATA TCTCTTAATT AATACAATTT GAACCTTAAA GATATAAAAA GCGAATTCAT 5894 .......... .......... .......... .......... .......... .......... 254 CGTCCAACTG GTTTATTATC TTCAAATTTG AAAACAATAT AAATTGAATA GAATTAACCC 5834 .......... .......... .......... .......... .......... .......... 254 AAAATATCTA AACATGAATC TAATTAAGCC AAAAGCAATA GAACAAAACA AATATATGTC 5774 .......... .......... .......... .......... .......... .......... 254 CCTCTTTGGA CTTTCTAGGC GTTACCACCA TTTTACGTTA AAAGGCAATG GTGCACCCGT 5714 .......... .......... .......... .......... .......... .......... 254 CACCTTAAAA CCCTGGTATG ATTCTGGTGT TGAGTAAGGT AAATGTGTTC TAGAGTTCCT 5654 .......... .......... .......... .......... .......... .......... 254 AACTCTCTGG ATGTGCACAT TCTACTTGAT GCATTCATCC TGATATTAGT GTTCACAATG 5594 .......... .......... .......... .......... .......... .......... 254 ATCTGCTTCT TTCTAATCTG TTTATGGGGT TGCAGATTAA TCTTCACAAA ATTAACTCTA 5534 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATTAA TCTTCACAAA ATTAACTCTA 279 AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 5474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 339 TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 5414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 399 AGGCTCTCAC ATCCACAGGT ATTCAGCAGC ACAAGCAAGT TGATGGATCT GATTTTGGGT 5354 |||||||||| |||||||| AGGCTCTCAC ATCCACAG.. .......... .......... .......... .......... 417 ATTTTCAGGA TGGCTTTTCT TACTTATCTT CAGATTACAG TCATTCAGAT CAGACTACGG 5294 .......... .......... .......... .......... .......... .......... 417 TTTGTCCAAC CCTATCCACA ATTAAATCTA AAAAAAGCTG TCTCGTGACT CTTTCTGCTA 5234 .......... .......... .......... .......... .......... .......... 417 AGGACTCCTG TGCGACAAAT CAGATGCAGT TGATGGAAAG CTTACCTGAT CCTTCTTTTC 5174 .......... .......... .......... .......... .......... .......... 417 AGGTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTAA 5114 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTAA 475 TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 5054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 535 GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTGAGG 4994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTGAGG 595 AGGCAGATAG TTTTCATCAG CTTGAACATG TCATGGAACG GGTATAAAAT CTCAATGAAA 4934 |||||||||| |||||||||| |||||||||| |||||||||| | AGGCAGATAG TTTTCATCAG CTTGAACATG TCATGGAACG G......... .......... 636 ACTAATATGC ATTTTTGATA TTGTTTGGTG ATGAGTTTCA TCAAGGTTTG TTTTAAGTGA 4874 .......... .......... .......... .......... .......... .......... 636 GTGATTTGAC TAAACAAATT TGGCACACCT TATTTGTGTA GGTCAATAGC TCAAACGACA 4814 .......... .......... .......... .......... .......... .......... 636 TGTGCAATGC TTTTAGATGG TTCTCAGCTG GATTAAGATA GTTTTTTAGT CGAGGGACAA 4754 .......... .......... .......... .......... .......... .......... 636 TATTAATGAC AAACATATTA TACAAATTCC TATATTCTGG GAAGGTTAAT GATGTGCAGC 4694 .......... .......... .......... .......... .......... .......... 636 TACACACTCT TGTAGCTTCA CGCAGTCATA GAGAACTATT CTATTTTGTC AGGAAGTTGT 4634 .......... .......... .......... .......... .......... .......... 636 CACACAGCAT GCTGTAGCAT TGTGCATACA TCTGACTTTT TCTAACCATT CTAAATTAGA 4574 .......... .......... .......... .......... .......... .......... 636 GATCTTTGTT ATTTAATTGA GACATGTGAA GATGCTGAGT AAATAGGAAC TCATTTGGTC 4514 .......... .......... .......... .......... .......... .......... 636 CTCTTATTCA TTATTTATAT TTATACAGAT CACATATTAA ATTATTTTTT GTGTTAGAAT 4454 .......... .......... .......... .......... .......... .......... 636 AATTCATATT AGTGATGGCG TTTTACTAAG ACTTATTTAG AAAAATCTTT GTTCATGTAT 4394 .......... .......... .......... .......... .......... .......... 636 ATCTATAGTA ACCTATATCA TACTATTGCC TATAGCTACA GAATATAGAT ATAGAAAAGA 4334 .......... .......... .......... .......... .......... .......... 636 GTATTTGTCT CTTAGTGCAT GTTTGTGTTG CAGATAGCAA TGCAGAGAGC TGATTGCTTA 4274 .......... .......... .......... .......... .......... .......... 636 TTTAGTACAA CAGACAGCCT TAATATAAAA GCTGTTCCTC ATCATCTTGC TGCTTGCTTA 4214 .......... .......... .......... .......... .......... .......... 636 TTTTAAATTA TTAATCAGCG GATGTGCAAA AGCCTTCCAA AGTCTGACTT ATCGTTGAGT 4154 .......... .......... .......... .......... .......... .......... 636 GTCTTGAAAC TATCTTTGTG TTAATCCTGT AAACTTGGGC TAGGAAGGGG CAGTTAGCAG 4094 .......... .......... .......... .......... .......... .......... 636 ATTTGGTATG TGGTTCTTCA AGTTTATACA TTTAGTTGGA AATCAACTTT CTTTTCAGTA 4034 .......... .......... .......... .......... .......... .......... 636 CATGCATGTT TGTTAGCTCA CTCTGTTGAG CCTTCTGGTT TAGTTGGATG TAAGAACAAA 3974 ||||||| |||||||||| .......... .......... .......... .......... ...TTGGATG TAAGAACAAA 653 GCTACGGATA AGGG-ATAGC TTGTATCGG- TTGGCTCAGA GTGCTGAACA AAGGCTTAGA 3916 |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| |||||||||| GCTACGGATA AGGGAATAGC TTGTATCGGN TTGGCTCAGA GTGCTGAACA AAGGCTTAGA 713 CATGCTAATC TCAATAATGG ATCTGGTGAT GATAGTCACA CAAGCAGAGC ATTTGATGAT 3856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCTAATC TCAATAATGG ATCTGGTGAT GATAGTCACA CAAGCAGAGC ATTTGATGAT 773 GATGGAGCAT ACAGGTTGGT ATCGTTTCTT GATGCCTTGG TCTACATGCA TACTTCCCAT 3796 |||||||||| |||| GATGGAGCAT ACAG...... .......... .......... .......... .......... 787 ATAGGCCGTA TCATAGTTTG CATACTTCAA GCACACGGTA TGTTTGGTTT AGTTAGTGAA 3736 .......... .......... .......... .......... .......... .......... 787 GATCTTATGA AGCACATTTC TCACCCTTCG AGTTTGGAAA GTAAGTAGGT CTAGTCAGTC 3676 .......... .......... .......... .......... .......... .......... 787 ACACCTTGAA TAAGCACTTT TCTTTTCTTG ATACCAGTAA TCATACTGGT AATGTGATAG 3616 .......... .......... .......... .......... .......... .......... 787 ATTCTGTTGG CTTCCTTTCT GTGGTCTTAA CATCTATTGG CTTGTTTTTC AGATGCACAG 3556 |||||||| .......... .......... .......... .......... .......... ..ATGCACAG 795 GA 3554 || GA 797 hqPGS_C04HBa0127E11.1-_SGN-E261699+ (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) ******************************************************************************** EST sequence 150 +strand 703 n (File: SGN-E369679+) 1 CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 61 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 121 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 181 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 241 TGCCCATAAA GAAGATTAAT CTTCACAAAA TTAACTCTAA GCTCCAGAAT CAATCTGAGG 301 GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT CAACTATATT GATAGCCTTC 361 CAGAAGAGAG AAACCATCCT ACTGCAATCA CTGGATCTCA GGCTCTCACA TCCACAGGTG 421 GCTGGTATAG GAACAAATGA AAATATGGTG GACAAGCTAC TTCAACGTTC TGTAATTAAG 481 CATGAAAACA ACAGGGATCT TGAAAGTGTC AGCACGGGAA TTCCAGCAGA AGTAGGTTCC 541 TCTATTGTAA AGGAGAGCTC TTGCACAAGT TCTGGGTTGA ATGAAATTTC TGAGGAGGCA 601 GATAGTTTTC ATCAGCTTGA ACATGTCATG GAACGGTTGG ATGTAAGAAC AAAGCTACGG 661 ATAAGGGATA GCTTGTATCG GTTGGCTCAG AGTGCTGAAC AAA Predicted gene structure (within gDNA segment 8473 to 3314): Exon 1 7873 7620 ( 254 n); cDNA 1 254 ( 254 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5558 5396 ( 163 n); cDNA 255 417 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 (s: 1.00), Pa: 0.747 (s: 1.00) Exon 3 5171 4953 ( 219 n); cDNA 418 636 ( 219 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 3990 3924 ( 67 n); cDNA 637 703 ( 67 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E369679+ 1.000 703 1.000 C PGS_C04HBa0127E11.1-_SGN-E369679+ (7873 7620,5558 5396,5171 4953,3990 3924) Alignment (genomic DNA sequence = upper lines): CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 7814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 60 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 7754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 120 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 7694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 180 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 7634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 240 TGCCCATAAA GAAGGTAAAT TATTAATTTA GTGTACATCG GGCTTTCTGT TTAGCCTTTT 7574 |||||||||| |||| TGCCCATAAA GAAG...... .......... .......... .......... .......... 254 ATTCCACCTC AGCTTAACCT TTAAGGTGTT CTATTTGAAG ATTGTTGAAT TCAATGGAGG 7514 .......... .......... .......... .......... .......... .......... 254 GATCAGGTTG AGATTTTGTC TAACATGCAC ACATGAACTA GTGATAGAGT GTTATTGGCG 7454 .......... .......... .......... .......... .......... .......... 254 TTCAGCATGT TCATCTAATT TAAAATCTTA AGCTGATAGA GAGAACACAC TTTTATTTAC 7394 .......... .......... .......... .......... .......... .......... 254 TTAATTATGT TTCCAACATG TCCTTTACAT TTGGACTTGA TTCTTTTTCA TGGGCCAAGC 7334 .......... .......... .......... .......... .......... .......... 254 ATATGTAGAT TCTTTTTTGT TAATGGGTAG CAATGAATTC CAAACCCAGT ACATGTGGCT 7274 .......... .......... .......... .......... .......... .......... 254 GCGGTAATAC CGTGTTGACT CTGTCATCAT CTCATCTAAA AACTCATGTT ATATCTTTCA 7214 .......... .......... .......... .......... .......... .......... 254 TAAGCACTCT TTCTTTTCCA AAATCTTGTC TTAAGCAAGG AAATACATGC ATTGATGAGG 7154 .......... .......... .......... .......... .......... .......... 254 TGCACTGTCG CCGGCACCAA TGGTTTTGAC TCTATTTTTA TGCGTGAAAC TTCTCAAGAA 7094 .......... .......... .......... .......... .......... .......... 254 ACATATATGA ACAAAGTGGC TCCCCTCATG TAAAGGGACA ACTGGGTGCA CTGTTTCATC 7034 .......... .......... .......... .......... .......... .......... 254 TAAGATATTC TGGTAATGAA CACAGTTGAA GCAATTTTTT TCATTTGTTC CTCACCTCAG 6974 .......... .......... .......... .......... .......... .......... 254 TCTGATCTCT GTTTCTTTAG TTTCTTTGTT GTTTCTGATT CTTCACTTGT TTTTACTCTT 6914 .......... .......... .......... .......... .......... .......... 254 TAAAAACAAA TCTTCACAGC AAAATTAGGA AAGGATGACT AGGTGAGCAA TTTGTAGCAC 6854 .......... .......... .......... .......... .......... .......... 254 TTTTTTTTTT TTGAAATGTT CACAATTTTA TATATCAGTG CATAAAAATT GAGCCAACAA 6794 .......... .......... .......... .......... .......... .......... 254 CCATAATTTG AGACATGACA ACCTGATCAA ATACTATCCT ATACACTTAT ATATATTCTA 6734 .......... .......... .......... .......... .......... .......... 254 AACACACTAA GATAGATTCA GTAGCCAGTG TGAGTTCTTT TTTACACAAA CAAAAAAATA 6674 .......... .......... .......... .......... .......... .......... 254 AGAAAAGTGA ATTCATCTTG ATCTACTGAG TCGGACTATC CTTGCTTGAA AGAAATCTCT 6614 .......... .......... .......... .......... .......... .......... 254 GATTCCTTTC CCTACAGACA GACCACCATA TCTGAAATGG TATCCTTTTT CATCTCCTTT 6554 .......... .......... .......... .......... .......... .......... 254 ATGCCTGGGT ATAAGATGAC TCCTCTATTC CGGCATGTCA CTCTTTCCCC TACTCCCCCT 6494 .......... .......... .......... .......... .......... .......... 254 GGCCTCCGCG TCAATTTTTC TTCTAGAAAT GAATCTTTAG AAGCAAAATC ATGAGTTGGT 6434 .......... .......... .......... .......... .......... .......... 254 GAAACAGGGA AAGGTGCTAT TTGCAACATT GTATACACAA ATTTGCCTTC CTTTTTTTCC 6374 .......... .......... .......... .......... .......... .......... 254 ATGTATAAAT GTTACTCTTC TTTGTTTCAT TTTATGTGAT GCAGTTTAAT TGGGCACAAA 6314 .......... .......... .......... .......... .......... .......... 254 ATTTGAAAGG GAGAGTAAGA CTTTTGAAAT TTGTGGTCTA AAACAAGTCT TAGATATCTG 6254 .......... .......... .......... .......... .......... .......... 254 TGTGACTGCG GTAAGATGAG AATTTTAAAG TTAAATACAG AACGACATTA TTGCTTTTGG 6194 .......... .......... .......... .......... .......... .......... 254 GACAACTAAA AACTAAAATG CATCACATAA GTTGGGACAG GTGGAGTAGT TTGGAAAATT 6134 .......... .......... .......... .......... .......... .......... 254 GTAATTTGTA ATCCATCTTT GAAGAACGCA CTTTTTTCTT GTCTTGTTGG TTGGATTATG 6074 .......... .......... .......... .......... .......... .......... 254 GTTCCTGCAT TGAAAATGTA AATTTGTTTC TATTATTGAT TAATGAGGTG TGGTTCGAAC 6014 .......... .......... .......... .......... .......... .......... 254 TGACAACATT TATTTTGCTT GTATTATTGA TACTGATGTG TACTCATGAA TTGGTTGTGA 5954 .......... .......... .......... .......... .......... .......... 254 GTATAGGATA TCTCTTAATT AATACAATTT GAACCTTAAA GATATAAAAA GCGAATTCAT 5894 .......... .......... .......... .......... .......... .......... 254 CGTCCAACTG GTTTATTATC TTCAAATTTG AAAACAATAT AAATTGAATA GAATTAACCC 5834 .......... .......... .......... .......... .......... .......... 254 AAAATATCTA AACATGAATC TAATTAAGCC AAAAGCAATA GAACAAAACA AATATATGTC 5774 .......... .......... .......... .......... .......... .......... 254 CCTCTTTGGA CTTTCTAGGC GTTACCACCA TTTTACGTTA AAAGGCAATG GTGCACCCGT 5714 .......... .......... .......... .......... .......... .......... 254 CACCTTAAAA CCCTGGTATG ATTCTGGTGT TGAGTAAGGT AAATGTGTTC TAGAGTTCCT 5654 .......... .......... .......... .......... .......... .......... 254 AACTCTCTGG ATGTGCACAT TCTACTTGAT GCATTCATCC TGATATTAGT GTTCACAATG 5594 .......... .......... .......... .......... .......... .......... 254 ATCTGCTTCT TTCTAATCTG TTTATGGGGT TGCAGATTAA TCTTCACAAA ATTAACTCTA 5534 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATTAA TCTTCACAAA ATTAACTCTA 279 AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 5474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 339 TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 5414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 399 AGGCTCTCAC ATCCACAGGT ATTCAGCAGC ACAAGCAAGT TGATGGATCT GATTTTGGGT 5354 |||||||||| |||||||| AGGCTCTCAC ATCCACAG.. .......... .......... .......... .......... 417 ATTTTCAGGA TGGCTTTTCT TACTTATCTT CAGATTACAG TCATTCAGAT CAGACTACGG 5294 .......... .......... .......... .......... .......... .......... 417 TTTGTCCAAC CCTATCCACA ATTAAATCTA AAAAAAGCTG TCTCGTGACT CTTTCTGCTA 5234 .......... .......... .......... .......... .......... .......... 417 AGGACTCCTG TGCGACAAAT CAGATGCAGT TGATGGAAAG CTTACCTGAT CCTTCTTTTC 5174 .......... .......... .......... .......... .......... .......... 417 AGGTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTAA 5114 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTAA 475 TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 5054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 535 GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTGAGG 4994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTGAGG 595 AGGCAGATAG TTTTCATCAG CTTGAACATG TCATGGAACG GGTATAAAAT CTCAATGAAA 4934 |||||||||| |||||||||| |||||||||| |||||||||| | AGGCAGATAG TTTTCATCAG CTTGAACATG TCATGGAACG G......... .......... 636 ACTAATATGC ATTTTTGATA TTGTTTGGTG ATGAGTTTCA TCAAGGTTTG TTTTAAGTGA 4874 .......... .......... .......... .......... .......... .......... 636 GTGATTTGAC TAAACAAATT TGGCACACCT TATTTGTGTA GGTCAATAGC TCAAACGACA 4814 .......... .......... .......... .......... .......... .......... 636 TGTGCAATGC TTTTAGATGG TTCTCAGCTG GATTAAGATA GTTTTTTAGT CGAGGGACAA 4754 .......... .......... .......... .......... .......... .......... 636 TATTAATGAC AAACATATTA TACAAATTCC TATATTCTGG GAAGGTTAAT GATGTGCAGC 4694 .......... .......... .......... .......... .......... .......... 636 TACACACTCT TGTAGCTTCA CGCAGTCATA GAGAACTATT CTATTTTGTC AGGAAGTTGT 4634 .......... .......... .......... .......... .......... .......... 636 CACACAGCAT GCTGTAGCAT TGTGCATACA TCTGACTTTT TCTAACCATT CTAAATTAGA 4574 .......... .......... .......... .......... .......... .......... 636 GATCTTTGTT ATTTAATTGA GACATGTGAA GATGCTGAGT AAATAGGAAC TCATTTGGTC 4514 .......... .......... .......... .......... .......... .......... 636 CTCTTATTCA TTATTTATAT TTATACAGAT CACATATTAA ATTATTTTTT GTGTTAGAAT 4454 .......... .......... .......... .......... .......... .......... 636 AATTCATATT AGTGATGGCG TTTTACTAAG ACTTATTTAG AAAAATCTTT GTTCATGTAT 4394 .......... .......... .......... .......... .......... .......... 636 ATCTATAGTA ACCTATATCA TACTATTGCC TATAGCTACA GAATATAGAT ATAGAAAAGA 4334 .......... .......... .......... .......... .......... .......... 636 GTATTTGTCT CTTAGTGCAT GTTTGTGTTG CAGATAGCAA TGCAGAGAGC TGATTGCTTA 4274 .......... .......... .......... .......... .......... .......... 636 TTTAGTACAA CAGACAGCCT TAATATAAAA GCTGTTCCTC ATCATCTTGC TGCTTGCTTA 4214 .......... .......... .......... .......... .......... .......... 636 TTTTAAATTA TTAATCAGCG GATGTGCAAA AGCCTTCCAA AGTCTGACTT ATCGTTGAGT 4154 .......... .......... .......... .......... .......... .......... 636 GTCTTGAAAC TATCTTTGTG TTAATCCTGT AAACTTGGGC TAGGAAGGGG CAGTTAGCAG 4094 .......... .......... .......... .......... .......... .......... 636 ATTTGGTATG TGGTTCTTCA AGTTTATACA TTTAGTTGGA AATCAACTTT CTTTTCAGTA 4034 .......... .......... .......... .......... .......... .......... 636 CATGCATGTT TGTTAGCTCA CTCTGTTGAG CCTTCTGGTT TAGTTGGATG TAAGAACAAA 3974 ||||||| |||||||||| .......... .......... .......... .......... ...TTGGATG TAAGAACAAA 653 GCTACGGATA AGGGATAGCT TGTATCGGTT GGCTCAGAGT GCTGAACAAA 3924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACGGATA AGGGATAGCT TGTATCGGTT GGCTCAGAGT GCTGAACAAA 703 hqPGS_C04HBa0127E11.1-_SGN-E369679+ (7873 7620,5558 5396,5171 4953,3990 3924) ******************************************************************************** EST sequence 120 +strand 598 n (File: SGN-E273352+) 1 CAGACTGGCA GTTCAATGCC ATCAGAGGAT GAATCAGCCG TTCTGAGTCA TCTATCTTTT 61 ACAAATGGTT CAAGTGATTC AGATTTCAAG ATAGTGCCCA TAAAGAAGAT TAATCTTCAC 121 AAAATTAACT CTAAGCTCCA GAATCAATCT GAGGGAAAAA GAAAACATGT TTACGTGGAA 181 AATGGGGAGA CATTCAACTA TATTGATAGC CTTCCAGAAG AGAGAAACCA TCCTACTGCA 241 ATCACTGGAT CTCAGGCTCT CACATCCACA GGTGGCTGGT ATAGGAACAA ATGAAAATAT 301 GGTGGACAAG CTACTTCAAC GTTCTGTAAT TAAGCATGAA AACAACAGGG ATCTTGAAAG 361 TGTCAGCACG GGAATTCCAG CAGAAGTAGG TTCCTCTATT GTAAAGGAGA GCTCTTGCAC 421 AAGTTCTGGG TTGAATGAAA TTTCTGAGGA GGCAGATAGT TTTCATCAGC TTGAACATGT 481 CATGGAACGG GTATAAAATC TCAATGAAAA CTAATATGCA TTTTTGATAT TGTTTGGTGA 541 TGAGTTTCAT CAAAGTTTGT TTTAAGTGAG TGATTTGACT AAACAAATTT GGCACACC Predicted gene structure (within gDNA segment 8327 to 4235): Exon 1 7727 7620 ( 108 n); cDNA 1 108 ( 108 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5558 5396 ( 163 n); cDNA 109 271 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 (s: 1.00), Pa: 0.747 (s: 1.00) Exon 3 5171 4845 ( 327 n); cDNA 272 598 ( 327 n); score: 0.997 MATCH C04HBa0127E11.1- SGN-E273352+ 0.998 598 1.000 C PGS_C04HBa0127E11.1-_SGN-E273352+ (7727 7620,5558 5396,5171 4845) Alignment (genomic DNA sequence = upper lines): CAGACTGGCA GTTCAATGCC ATCAGAGGAT GAATCAGCCG TTCTGAGTCA TCTATCTTTT 7668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACTGGCA GTTCAATGCC ATCAGAGGAT GAATCAGCCG TTCTGAGTCA TCTATCTTTT 60 ACAAATGGTT CAAGTGATTC AGATTTCAAG ATAGTGCCCA TAAAGAAGGT AAATTATTAA 7608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACAAATGGTT CAAGTGATTC AGATTTCAAG ATAGTGCCCA TAAAGAAG.. .......... 108 TTTAGTGTAC ATCGGGCTTT CTGTTTAGCC TTTTATTCCA CCTCAGCTTA ACCTTTAAGG 7548 .......... .......... .......... .......... .......... .......... 108 TGTTCTATTT GAAGATTGTT GAATTCAATG GAGGGATCAG GTTGAGATTT TGTCTAACAT 7488 .......... .......... .......... .......... .......... .......... 108 GCACACATGA ACTAGTGATA GAGTGTTATT GGCGTTCAGC ATGTTCATCT AATTTAAAAT 7428 .......... .......... .......... .......... .......... .......... 108 CTTAAGCTGA TAGAGAGAAC ACACTTTTAT TTACTTAATT ATGTTTCCAA CATGTCCTTT 7368 .......... .......... .......... .......... .......... .......... 108 ACATTTGGAC TTGATTCTTT TTCATGGGCC AAGCATATGT AGATTCTTTT TTGTTAATGG 7308 .......... .......... .......... .......... .......... .......... 108 GTAGCAATGA ATTCCAAACC CAGTACATGT GGCTGCGGTA ATACCGTGTT GACTCTGTCA 7248 .......... .......... .......... .......... .......... .......... 108 TCATCTCATC TAAAAACTCA TGTTATATCT TTCATAAGCA CTCTTTCTTT TCCAAAATCT 7188 .......... .......... .......... .......... .......... .......... 108 TGTCTTAAGC AAGGAAATAC ATGCATTGAT GAGGTGCACT GTCGCCGGCA CCAATGGTTT 7128 .......... .......... .......... .......... .......... .......... 108 TGACTCTATT TTTATGCGTG AAACTTCTCA AGAAACATAT ATGAACAAAG TGGCTCCCCT 7068 .......... .......... .......... .......... .......... .......... 108 CATGTAAAGG GACAACTGGG TGCACTGTTT CATCTAAGAT ATTCTGGTAA TGAACACAGT 7008 .......... .......... .......... .......... .......... .......... 108 TGAAGCAATT TTTTTCATTT GTTCCTCACC TCAGTCTGAT CTCTGTTTCT TTAGTTTCTT 6948 .......... .......... .......... .......... .......... .......... 108 TGTTGTTTCT GATTCTTCAC TTGTTTTTAC TCTTTAAAAA CAAATCTTCA CAGCAAAATT 6888 .......... .......... .......... .......... .......... .......... 108 AGGAAAGGAT GACTAGGTGA GCAATTTGTA GCACTTTTTT TTTTTTGAAA TGTTCACAAT 6828 .......... .......... .......... .......... .......... .......... 108 TTTATATATC AGTGCATAAA AATTGAGCCA ACAACCATAA TTTGAGACAT GACAACCTGA 6768 .......... .......... .......... .......... .......... .......... 108 TCAAATACTA TCCTATACAC TTATATATAT TCTAAACACA CTAAGATAGA TTCAGTAGCC 6708 .......... .......... .......... .......... .......... .......... 108 AGTGTGAGTT CTTTTTTACA CAAACAAAAA AATAAGAAAA GTGAATTCAT CTTGATCTAC 6648 .......... .......... .......... .......... .......... .......... 108 TGAGTCGGAC TATCCTTGCT TGAAAGAAAT CTCTGATTCC TTTCCCTACA GACAGACCAC 6588 .......... .......... .......... .......... .......... .......... 108 CATATCTGAA ATGGTATCCT TTTTCATCTC CTTTATGCCT GGGTATAAGA TGACTCCTCT 6528 .......... .......... .......... .......... .......... .......... 108 ATTCCGGCAT GTCACTCTTT CCCCTACTCC CCCTGGCCTC CGCGTCAATT TTTCTTCTAG 6468 .......... .......... .......... .......... .......... .......... 108 AAATGAATCT TTAGAAGCAA AATCATGAGT TGGTGAAACA GGGAAAGGTG CTATTTGCAA 6408 .......... .......... .......... .......... .......... .......... 108 CATTGTATAC ACAAATTTGC CTTCCTTTTT TTCCATGTAT AAATGTTACT CTTCTTTGTT 6348 .......... .......... .......... .......... .......... .......... 108 TCATTTTATG TGATGCAGTT TAATTGGGCA CAAAATTTGA AAGGGAGAGT AAGACTTTTG 6288 .......... .......... .......... .......... .......... .......... 108 AAATTTGTGG TCTAAAACAA GTCTTAGATA TCTGTGTGAC TGCGGTAAGA TGAGAATTTT 6228 .......... .......... .......... .......... .......... .......... 108 AAAGTTAAAT ACAGAACGAC ATTATTGCTT TTGGGACAAC TAAAAACTAA AATGCATCAC 6168 .......... .......... .......... .......... .......... .......... 108 ATAAGTTGGG ACAGGTGGAG TAGTTTGGAA AATTGTAATT TGTAATCCAT CTTTGAAGAA 6108 .......... .......... .......... .......... .......... .......... 108 CGCACTTTTT TCTTGTCTTG TTGGTTGGAT TATGGTTCCT GCATTGAAAA TGTAAATTTG 6048 .......... .......... .......... .......... .......... .......... 108 TTTCTATTAT TGATTAATGA GGTGTGGTTC GAACTGACAA CATTTATTTT GCTTGTATTA 5988 .......... .......... .......... .......... .......... .......... 108 TTGATACTGA TGTGTACTCA TGAATTGGTT GTGAGTATAG GATATCTCTT AATTAATACA 5928 .......... .......... .......... .......... .......... .......... 108 ATTTGAACCT TAAAGATATA AAAAGCGAAT TCATCGTCCA ACTGGTTTAT TATCTTCAAA 5868 .......... .......... .......... .......... .......... .......... 108 TTTGAAAACA ATATAAATTG AATAGAATTA ACCCAAAATA TCTAAACATG AATCTAATTA 5808 .......... .......... .......... .......... .......... .......... 108 AGCCAAAAGC AATAGAACAA AACAAATATA TGTCCCTCTT TGGACTTTCT AGGCGTTACC 5748 .......... .......... .......... .......... .......... .......... 108 ACCATTTTAC GTTAAAAGGC AATGGTGCAC CCGTCACCTT AAAACCCTGG TATGATTCTG 5688 .......... .......... .......... .......... .......... .......... 108 GTGTTGAGTA AGGTAAATGT GTTCTAGAGT TCCTAACTCT CTGGATGTGC ACATTCTACT 5628 .......... .......... .......... .......... .......... .......... 108 TGATGCATTC ATCCTGATAT TAGTGTTCAC AATGATCTGC TTCTTTCTAA TCTGTTTATG 5568 .......... .......... .......... .......... .......... .......... 108 GGGTTGCAGA TTAATCTTCA CAAAATTAAC TCTAAGCTCC AGAATCAATC TGAGGGAAAA 5508 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........A TTAATCTTCA CAAAATTAAC TCTAAGCTCC AGAATCAATC TGAGGGAAAA 159 AGAAAACATG TTTACGTGGA AAATGGGGAG ACATTCAACT ATATTGATAG CCTTCCAGAA 5448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAACATG TTTACGTGGA AAATGGGGAG ACATTCAACT ATATTGATAG CCTTCCAGAA 219 GAGAGAAACC ATCCTACTGC AATCACTGGA TCTCAGGCTC TCACATCCAC AGGTATTCAG 5388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGAGAAACC ATCCTACTGC AATCACTGGA TCTCAGGCTC TCACATCCAC AG........ 271 CAGCACAAGC AAGTTGATGG ATCTGATTTT GGGTATTTTC AGGATGGCTT TTCTTACTTA 5328 .......... .......... .......... .......... .......... .......... 271 TCTTCAGATT ACAGTCATTC AGATCAGACT ACGGTTTGTC CAACCCTATC CACAATTAAA 5268 .......... .......... .......... .......... .......... .......... 271 TCTAAAAAAA GCTGTCTCGT GACTCTTTCT GCTAAGGACT CCTGTGCGAC AAATCAGATG 5208 .......... .......... .......... .......... .......... .......... 271 CAGTTGATGG AAAGCTTACC TGATCCTTCT TTTCAGGTGG CTGGTATAGG AACAAATGAA 5148 |||| |||||||||| |||||||||| .......... .......... .......... ......GTGG CTGGTATAGG AACAAATGAA 295 AATATGGTGG ACAAGCTACT TCAACGTTCT GTAATTAAGC ATGAAAACAA CAGGGATCTT 5088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGGTGG ACAAGCTACT TCAACGTTCT GTAATTAAGC ATGAAAACAA CAGGGATCTT 355 GAAAGTGTCA GCACGGGAAT TCCAGCAGAA GTAGGTTCCT CTATTGTAAA GGAGAGCTCT 5028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGTGTCA GCACGGGAAT TCCAGCAGAA GTAGGTTCCT CTATTGTAAA GGAGAGCTCT 415 TGCACAAGTT CTGGGTTGAA TGAAATTTCT GAGGAGGCAG ATAGTTTTCA TCAGCTTGAA 4968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACAAGTT CTGGGTTGAA TGAAATTTCT GAGGAGGCAG ATAGTTTTCA TCAGCTTGAA 475 CATGTCATGG AACGGGTATA AAATCTCAAT GAAAACTAAT ATGCATTTTT GATATTGTTT 4908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTCATGG AACGGGTATA AAATCTCAAT GAAAACTAAT ATGCATTTTT GATATTGTTT 535 GGTGATGAGT TTCATCAAGG TTTGTTTTAA GTGAGTGATT TGACTAAACA AATTTGGCAC 4848 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GGTGATGAGT TTCATCAAAG TTTGTTTTAA GTGAGTGATT TGACTAAACA AATTTGGCAC 595 ACC 4845 ||| ACC 598 hqPGS_C04HBa0127E11.1-_SGN-E273352+ (7727 7620,5558 5396,5171 4845) ******************************************************************************** EST sequence 147 +strand 592 n (File: SGN-E301648+) 1 CTGGAGGTGG ATTGAGGTCA CATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 61 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 121 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 181 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCATAT TTCAAGATAG 241 AGCCCATAAC GAAGATTAAT CTTCACAAAA TTAACTCTAA GCTCCAGAAT CAATCTGAGG 301 GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT CAACTATATT GATAGCCTTC 361 CAGAAGAGAG AAACCATCCT ACTGCAATCA CTGGATCTCA GGCTCTCACA TCCACAGGTG 421 GCTGGTATAG GAACAAATGA AAATATGGTG GACAAGCTAC TTCAACGTTC TGTGATTAAG 481 CATGAAAACA ACAGGGATCT TGAAAGTGTC AGCACGGGAA TTCCAGCAGA AGTAGGTTCC 541 TCTATTGTAA AGGAGAGCTC TTGCACAAGT TCTGGGTTGA ATGAAATTTC TG Predicted gene structure (within gDNA segment 8473 to 4387): Exon 1 7873 7620 ( 254 n); cDNA 1 254 ( 254 n); score: 0.984 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 0.94), Pa: 0.989 (s: 1.00) Exon 2 5558 5396 ( 163 n); cDNA 255 417 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 (s: 1.00), Pa: 0.747 (s: 1.00) Exon 3 5171 4997 ( 175 n); cDNA 418 592 ( 175 n); score: 0.994 MATCH C04HBa0127E11.1- SGN-E301648+ 0.992 592 1.000 C PGS_C04HBa0127E11.1-_SGN-E301648+ (7873 7620,5558 5396,5171 4997) Alignment (genomic DNA sequence = upper lines): CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 7814 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CTGGAGGTGG ATTGAGGTCA CATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 60 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 7754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 120 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 7694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 180 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 7634 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCATAT TTCAAGATAG 240 TGCCCATAAA GAAGGTAAAT TATTAATTTA GTGTACATCG GGCTTTCTGT TTAGCCTTTT 7574 |||||||| |||| AGCCCATAAC GAAG...... .......... .......... .......... .......... 254 ATTCCACCTC AGCTTAACCT TTAAGGTGTT CTATTTGAAG ATTGTTGAAT TCAATGGAGG 7514 .......... .......... .......... .......... .......... .......... 254 GATCAGGTTG AGATTTTGTC TAACATGCAC ACATGAACTA GTGATAGAGT GTTATTGGCG 7454 .......... .......... .......... .......... .......... .......... 254 TTCAGCATGT TCATCTAATT TAAAATCTTA AGCTGATAGA GAGAACACAC TTTTATTTAC 7394 .......... .......... .......... .......... .......... .......... 254 TTAATTATGT TTCCAACATG TCCTTTACAT TTGGACTTGA TTCTTTTTCA TGGGCCAAGC 7334 .......... .......... .......... .......... .......... .......... 254 ATATGTAGAT TCTTTTTTGT TAATGGGTAG CAATGAATTC CAAACCCAGT ACATGTGGCT 7274 .......... .......... .......... .......... .......... .......... 254 GCGGTAATAC CGTGTTGACT CTGTCATCAT CTCATCTAAA AACTCATGTT ATATCTTTCA 7214 .......... .......... .......... .......... .......... .......... 254 TAAGCACTCT TTCTTTTCCA AAATCTTGTC TTAAGCAAGG AAATACATGC ATTGATGAGG 7154 .......... .......... .......... .......... .......... .......... 254 TGCACTGTCG CCGGCACCAA TGGTTTTGAC TCTATTTTTA TGCGTGAAAC TTCTCAAGAA 7094 .......... .......... .......... .......... .......... .......... 254 ACATATATGA ACAAAGTGGC TCCCCTCATG TAAAGGGACA ACTGGGTGCA CTGTTTCATC 7034 .......... .......... .......... .......... .......... .......... 254 TAAGATATTC TGGTAATGAA CACAGTTGAA GCAATTTTTT TCATTTGTTC CTCACCTCAG 6974 .......... .......... .......... .......... .......... .......... 254 TCTGATCTCT GTTTCTTTAG TTTCTTTGTT GTTTCTGATT CTTCACTTGT TTTTACTCTT 6914 .......... .......... .......... .......... .......... .......... 254 TAAAAACAAA TCTTCACAGC AAAATTAGGA AAGGATGACT AGGTGAGCAA TTTGTAGCAC 6854 .......... .......... .......... .......... .......... .......... 254 TTTTTTTTTT TTGAAATGTT CACAATTTTA TATATCAGTG CATAAAAATT GAGCCAACAA 6794 .......... .......... .......... .......... .......... .......... 254 CCATAATTTG AGACATGACA ACCTGATCAA ATACTATCCT ATACACTTAT ATATATTCTA 6734 .......... .......... .......... .......... .......... .......... 254 AACACACTAA GATAGATTCA GTAGCCAGTG TGAGTTCTTT TTTACACAAA CAAAAAAATA 6674 .......... .......... .......... .......... .......... .......... 254 AGAAAAGTGA ATTCATCTTG ATCTACTGAG TCGGACTATC CTTGCTTGAA AGAAATCTCT 6614 .......... .......... .......... .......... .......... .......... 254 GATTCCTTTC CCTACAGACA GACCACCATA TCTGAAATGG TATCCTTTTT CATCTCCTTT 6554 .......... .......... .......... .......... .......... .......... 254 ATGCCTGGGT ATAAGATGAC TCCTCTATTC CGGCATGTCA CTCTTTCCCC TACTCCCCCT 6494 .......... .......... .......... .......... .......... .......... 254 GGCCTCCGCG TCAATTTTTC TTCTAGAAAT GAATCTTTAG AAGCAAAATC ATGAGTTGGT 6434 .......... .......... .......... .......... .......... .......... 254 GAAACAGGGA AAGGTGCTAT TTGCAACATT GTATACACAA ATTTGCCTTC CTTTTTTTCC 6374 .......... .......... .......... .......... .......... .......... 254 ATGTATAAAT GTTACTCTTC TTTGTTTCAT TTTATGTGAT GCAGTTTAAT TGGGCACAAA 6314 .......... .......... .......... .......... .......... .......... 254 ATTTGAAAGG GAGAGTAAGA CTTTTGAAAT TTGTGGTCTA AAACAAGTCT TAGATATCTG 6254 .......... .......... .......... .......... .......... .......... 254 TGTGACTGCG GTAAGATGAG AATTTTAAAG TTAAATACAG AACGACATTA TTGCTTTTGG 6194 .......... .......... .......... .......... .......... .......... 254 GACAACTAAA AACTAAAATG CATCACATAA GTTGGGACAG GTGGAGTAGT TTGGAAAATT 6134 .......... .......... .......... .......... .......... .......... 254 GTAATTTGTA ATCCATCTTT GAAGAACGCA CTTTTTTCTT GTCTTGTTGG TTGGATTATG 6074 .......... .......... .......... .......... .......... .......... 254 GTTCCTGCAT TGAAAATGTA AATTTGTTTC TATTATTGAT TAATGAGGTG TGGTTCGAAC 6014 .......... .......... .......... .......... .......... .......... 254 TGACAACATT TATTTTGCTT GTATTATTGA TACTGATGTG TACTCATGAA TTGGTTGTGA 5954 .......... .......... .......... .......... .......... .......... 254 GTATAGGATA TCTCTTAATT AATACAATTT GAACCTTAAA GATATAAAAA GCGAATTCAT 5894 .......... .......... .......... .......... .......... .......... 254 CGTCCAACTG GTTTATTATC TTCAAATTTG AAAACAATAT AAATTGAATA GAATTAACCC 5834 .......... .......... .......... .......... .......... .......... 254 AAAATATCTA AACATGAATC TAATTAAGCC AAAAGCAATA GAACAAAACA AATATATGTC 5774 .......... .......... .......... .......... .......... .......... 254 CCTCTTTGGA CTTTCTAGGC GTTACCACCA TTTTACGTTA AAAGGCAATG GTGCACCCGT 5714 .......... .......... .......... .......... .......... .......... 254 CACCTTAAAA CCCTGGTATG ATTCTGGTGT TGAGTAAGGT AAATGTGTTC TAGAGTTCCT 5654 .......... .......... .......... .......... .......... .......... 254 AACTCTCTGG ATGTGCACAT TCTACTTGAT GCATTCATCC TGATATTAGT GTTCACAATG 5594 .......... .......... .......... .......... .......... .......... 254 ATCTGCTTCT TTCTAATCTG TTTATGGGGT TGCAGATTAA TCTTCACAAA ATTAACTCTA 5534 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATTAA TCTTCACAAA ATTAACTCTA 279 AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 5474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 339 TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 5414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 399 AGGCTCTCAC ATCCACAGGT ATTCAGCAGC ACAAGCAAGT TGATGGATCT GATTTTGGGT 5354 |||||||||| |||||||| AGGCTCTCAC ATCCACAG.. .......... .......... .......... .......... 417 ATTTTCAGGA TGGCTTTTCT TACTTATCTT CAGATTACAG TCATTCAGAT CAGACTACGG 5294 .......... .......... .......... .......... .......... .......... 417 TTTGTCCAAC CCTATCCACA ATTAAATCTA AAAAAAGCTG TCTCGTGACT CTTTCTGCTA 5234 .......... .......... .......... .......... .......... .......... 417 AGGACTCCTG TGCGACAAAT CAGATGCAGT TGATGGAAAG CTTACCTGAT CCTTCTTTTC 5174 .......... .......... .......... .......... .......... .......... 417 AGGTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTAA 5114 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ..GTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTGA 475 TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 5054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 535 GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTG 4997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTG 592 hqPGS_C04HBa0127E11.1-_SGN-E301648+ (7873 7620,5558 5396,5171 4997) ******************************************************************************** EST sequence 75 +strand 469 n (File: SGN-E255283+) 1 CACTTGAAAA TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA GGCAATTCAA 61 TTAATGATTC TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA ATGCCATCAG 121 AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT 181 TCAAGATAGT GCCCATAAAG AAGATTAATC TTCACAAAAT TAACTCTAAG CTCCAGAATC 241 AATCTGAGGG AAAAAGAAAA CATGTTTACG TGGAAAATGG GGAGACATTC AACTATATTG 301 ATAGCCTTCC AGAAGAGAGA AACCATCCTA CTGCAATCAC TGGATCTCAG GCTCTCACAT 361 CCACAGGTGG CTGGTATAGG AACAAATGAA AATATGGTGG ACAAGCTACT TCAACGTTCT 421 GTAATTAAGC ATGAAAACAA CAGGGATCTT GAAAGTGTCA GCACGGGAA Predicted gene structure (within gDNA segment 8422 to 4459): Exon 1 7822 7620 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5558 5396 ( 163 n); cDNA 204 366 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 (s: 1.00), Pa: 0.747 (s: 1.00) Exon 3 5171 5069 ( 103 n); cDNA 367 469 ( 103 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E255283+ 1.000 469 1.000 C PGS_C04HBa0127E11.1-_SGN-E255283+ (7822 7620,5558 5396,5171 5069) Alignment (genomic DNA sequence = upper lines): CACTTGAAAA TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA GGCAATTCAA 7763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTGAAAA TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA GGCAATTCAA 60 TTAATGATTC TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA ATGCCATCAG 7703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATGATTC TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA ATGCCATCAG 120 AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT 7643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT 180 TCAAGATAGT GCCCATAAAG AAGGTAAATT ATTAATTTAG TGTACATCGG GCTTTCTGTT 7583 |||||||||| |||||||||| ||| TCAAGATAGT GCCCATAAAG AAG....... .......... .......... .......... 203 TAGCCTTTTA TTCCACCTCA GCTTAACCTT TAAGGTGTTC TATTTGAAGA TTGTTGAATT 7523 .......... .......... .......... .......... .......... .......... 203 CAATGGAGGG ATCAGGTTGA GATTTTGTCT AACATGCACA CATGAACTAG TGATAGAGTG 7463 .......... .......... .......... .......... .......... .......... 203 TTATTGGCGT TCAGCATGTT CATCTAATTT AAAATCTTAA GCTGATAGAG AGAACACACT 7403 .......... .......... .......... .......... .......... .......... 203 TTTATTTACT TAATTATGTT TCCAACATGT CCTTTACATT TGGACTTGAT TCTTTTTCAT 7343 .......... .......... .......... .......... .......... .......... 203 GGGCCAAGCA TATGTAGATT CTTTTTTGTT AATGGGTAGC AATGAATTCC AAACCCAGTA 7283 .......... .......... .......... .......... .......... .......... 203 CATGTGGCTG CGGTAATACC GTGTTGACTC TGTCATCATC TCATCTAAAA ACTCATGTTA 7223 .......... .......... .......... .......... .......... .......... 203 TATCTTTCAT AAGCACTCTT TCTTTTCCAA AATCTTGTCT TAAGCAAGGA AATACATGCA 7163 .......... .......... .......... .......... .......... .......... 203 TTGATGAGGT GCACTGTCGC CGGCACCAAT GGTTTTGACT CTATTTTTAT GCGTGAAACT 7103 .......... .......... .......... .......... .......... .......... 203 TCTCAAGAAA CATATATGAA CAAAGTGGCT CCCCTCATGT AAAGGGACAA CTGGGTGCAC 7043 .......... .......... .......... .......... .......... .......... 203 TGTTTCATCT AAGATATTCT GGTAATGAAC ACAGTTGAAG CAATTTTTTT CATTTGTTCC 6983 .......... .......... .......... .......... .......... .......... 203 TCACCTCAGT CTGATCTCTG TTTCTTTAGT TTCTTTGTTG TTTCTGATTC TTCACTTGTT 6923 .......... .......... .......... .......... .......... .......... 203 TTTACTCTTT AAAAACAAAT CTTCACAGCA AAATTAGGAA AGGATGACTA GGTGAGCAAT 6863 .......... .......... .......... .......... .......... .......... 203 TTGTAGCACT TTTTTTTTTT TGAAATGTTC ACAATTTTAT ATATCAGTGC ATAAAAATTG 6803 .......... .......... .......... .......... .......... .......... 203 AGCCAACAAC CATAATTTGA GACATGACAA CCTGATCAAA TACTATCCTA TACACTTATA 6743 .......... .......... .......... .......... .......... .......... 203 TATATTCTAA ACACACTAAG ATAGATTCAG TAGCCAGTGT GAGTTCTTTT TTACACAAAC 6683 .......... .......... .......... .......... .......... .......... 203 AAAAAAATAA GAAAAGTGAA TTCATCTTGA TCTACTGAGT CGGACTATCC TTGCTTGAAA 6623 .......... .......... .......... .......... .......... .......... 203 GAAATCTCTG ATTCCTTTCC CTACAGACAG ACCACCATAT CTGAAATGGT ATCCTTTTTC 6563 .......... .......... .......... .......... .......... .......... 203 ATCTCCTTTA TGCCTGGGTA TAAGATGACT CCTCTATTCC GGCATGTCAC TCTTTCCCCT 6503 .......... .......... .......... .......... .......... .......... 203 ACTCCCCCTG GCCTCCGCGT CAATTTTTCT TCTAGAAATG AATCTTTAGA AGCAAAATCA 6443 .......... .......... .......... .......... .......... .......... 203 TGAGTTGGTG AAACAGGGAA AGGTGCTATT TGCAACATTG TATACACAAA TTTGCCTTCC 6383 .......... .......... .......... .......... .......... .......... 203 TTTTTTTCCA TGTATAAATG TTACTCTTCT TTGTTTCATT TTATGTGATG CAGTTTAATT 6323 .......... .......... .......... .......... .......... .......... 203 GGGCACAAAA TTTGAAAGGG AGAGTAAGAC TTTTGAAATT TGTGGTCTAA AACAAGTCTT 6263 .......... .......... .......... .......... .......... .......... 203 AGATATCTGT GTGACTGCGG TAAGATGAGA ATTTTAAAGT TAAATACAGA ACGACATTAT 6203 .......... .......... .......... .......... .......... .......... 203 TGCTTTTGGG ACAACTAAAA ACTAAAATGC ATCACATAAG TTGGGACAGG TGGAGTAGTT 6143 .......... .......... .......... .......... .......... .......... 203 TGGAAAATTG TAATTTGTAA TCCATCTTTG AAGAACGCAC TTTTTTCTTG TCTTGTTGGT 6083 .......... .......... .......... .......... .......... .......... 203 TGGATTATGG TTCCTGCATT GAAAATGTAA ATTTGTTTCT ATTATTGATT AATGAGGTGT 6023 .......... .......... .......... .......... .......... .......... 203 GGTTCGAACT GACAACATTT ATTTTGCTTG TATTATTGAT ACTGATGTGT ACTCATGAAT 5963 .......... .......... .......... .......... .......... .......... 203 TGGTTGTGAG TATAGGATAT CTCTTAATTA ATACAATTTG AACCTTAAAG ATATAAAAAG 5903 .......... .......... .......... .......... .......... .......... 203 CGAATTCATC GTCCAACTGG TTTATTATCT TCAAATTTGA AAACAATATA AATTGAATAG 5843 .......... .......... .......... .......... .......... .......... 203 AATTAACCCA AAATATCTAA ACATGAATCT AATTAAGCCA AAAGCAATAG AACAAAACAA 5783 .......... .......... .......... .......... .......... .......... 203 ATATATGTCC CTCTTTGGAC TTTCTAGGCG TTACCACCAT TTTACGTTAA AAGGCAATGG 5723 .......... .......... .......... .......... .......... .......... 203 TGCACCCGTC ACCTTAAAAC CCTGGTATGA TTCTGGTGTT GAGTAAGGTA AATGTGTTCT 5663 .......... .......... .......... .......... .......... .......... 203 AGAGTTCCTA ACTCTCTGGA TGTGCACATT CTACTTGATG CATTCATCCT GATATTAGTG 5603 .......... .......... .......... .......... .......... .......... 203 TTCACAATGA TCTGCTTCTT TCTAATCTGT TTATGGGGTT GCAGATTAAT CTTCACAAAA 5543 |||||| |||||||||| .......... .......... .......... .......... ....ATTAAT CTTCACAAAA 219 TTAACTCTAA GCTCCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG 5483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACTCTAA GCTCCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG 279 GGGAGACATT CAACTATATT GATAGCCTTC CAGAAGAGAG AAACCATCCT ACTGCAATCA 5423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGACATT CAACTATATT GATAGCCTTC CAGAAGAGAG AAACCATCCT ACTGCAATCA 339 CTGGATCTCA GGCTCTCACA TCCACAGGTA TTCAGCAGCA CAAGCAAGTT GATGGATCTG 5363 |||||||||| |||||||||| ||||||| CTGGATCTCA GGCTCTCACA TCCACAG... .......... .......... .......... 366 ATTTTGGGTA TTTTCAGGAT GGCTTTTCTT ACTTATCTTC AGATTACAGT CATTCAGATC 5303 .......... .......... .......... .......... .......... .......... 366 AGACTACGGT TTGTCCAACC CTATCCACAA TTAAATCTAA AAAAAGCTGT CTCGTGACTC 5243 .......... .......... .......... .......... .......... .......... 366 TTTCTGCTAA GGACTCCTGT GCGACAAATC AGATGCAGTT GATGGAAAGC TTACCTGATC 5183 .......... .......... .......... .......... .......... .......... 366 CTTCTTTTCA GGTGGCTGGT ATAGGAACAA ATGAAAATAT GGTGGACAAG CTACTTCAAC 5123 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTGGCTGGT ATAGGAACAA ATGAAAATAT GGTGGACAAG CTACTTCAAC 415 GTTCTGTAAT TAAGCATGAA AACAACAGGG ATCTTGAAAG TGTCAGCACG GGAA 5069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GTTCTGTAAT TAAGCATGAA AACAACAGGG ATCTTGAAAG TGTCAGCACG GGAA 469 hqPGS_C04HBa0127E11.1-_SGN-E255283+ (7822 7620,5558 5396,5171 5069) ******************************************************************************** EST sequence 152 +strand 427 n (File: SGN-E318635+) 1 GATGAATCAG CCGTTCTGAG TCATCTATCT TTTACAAATG GTTCAAGTGA TTCAGATTTC 61 AAGATAGTGC CCATAAAGAA GATTAATCTT CACAAAATTA ACTCTAAGCT CCAGAATCAA 121 TCTGAGGGAA AAAGAAAACA TGTTTACGTG GAAAATGGGG AGACATTCAA CTATATTGAT 181 AGCCTTCCAG AAGAGAGAAA CCATCCTACT GCAATCACTG GATCTCAGGC TCTCACATCC 241 ACAGGTATTC AGCAGCACAA GCAAGTTGAT GGATCTGATT TTGGGTATTT TCAGGATGGC 301 TTTTCTTACT TATCTTCAGA TTACAGTCAT TCAGATCAGA CTACGGTGGC TGGTATAGGA 361 ACAAATGAAA ATATGGTGGA CAAGCTACTT CAACGTTCTG TAATTAAGCA TGAAAACAAC 421 AGGGATC Predicted gene structure (within gDNA segment 8300 to 4480): Exon 1 7700 7620 ( 81 n); cDNA 1 81 ( 81 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5558 5295 ( 264 n); cDNA 82 345 ( 264 n); score: 1.000 Intron 2 5294 5172 ( 123 n); Pd: 0.611 (s: 1.00), Pa: 0.747 (s: 1.00) Exon 3 5171 5090 ( 82 n); cDNA 346 427 ( 82 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E318635+ 1.000 427 1.000 C PGS_C04HBa0127E11.1-_SGN-E318635+ (7700 7620,5558 5295,5171 5090) Alignment (genomic DNA sequence = upper lines): GATGAATCAG CCGTTCTGAG TCATCTATCT TTTACAAATG GTTCAAGTGA TTCAGATTTC 7641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAATCAG CCGTTCTGAG TCATCTATCT TTTACAAATG GTTCAAGTGA TTCAGATTTC 60 AAGATAGTGC CCATAAAGAA GGTAAATTAT TAATTTAGTG TACATCGGGC TTTCTGTTTA 7581 |||||||||| |||||||||| | AAGATAGTGC CCATAAAGAA G......... .......... .......... .......... 81 GCCTTTTATT CCACCTCAGC TTAACCTTTA AGGTGTTCTA TTTGAAGATT GTTGAATTCA 7521 .......... .......... .......... .......... .......... .......... 81 ATGGAGGGAT CAGGTTGAGA TTTTGTCTAA CATGCACACA TGAACTAGTG ATAGAGTGTT 7461 .......... .......... .......... .......... .......... .......... 81 ATTGGCGTTC AGCATGTTCA TCTAATTTAA AATCTTAAGC TGATAGAGAG AACACACTTT 7401 .......... .......... .......... .......... .......... .......... 81 TATTTACTTA ATTATGTTTC CAACATGTCC TTTACATTTG GACTTGATTC TTTTTCATGG 7341 .......... .......... .......... .......... .......... .......... 81 GCCAAGCATA TGTAGATTCT TTTTTGTTAA TGGGTAGCAA TGAATTCCAA ACCCAGTACA 7281 .......... .......... .......... .......... .......... .......... 81 TGTGGCTGCG GTAATACCGT GTTGACTCTG TCATCATCTC ATCTAAAAAC TCATGTTATA 7221 .......... .......... .......... .......... .......... .......... 81 TCTTTCATAA GCACTCTTTC TTTTCCAAAA TCTTGTCTTA AGCAAGGAAA TACATGCATT 7161 .......... .......... .......... .......... .......... .......... 81 GATGAGGTGC ACTGTCGCCG GCACCAATGG TTTTGACTCT ATTTTTATGC GTGAAACTTC 7101 .......... .......... .......... .......... .......... .......... 81 TCAAGAAACA TATATGAACA AAGTGGCTCC CCTCATGTAA AGGGACAACT GGGTGCACTG 7041 .......... .......... .......... .......... .......... .......... 81 TTTCATCTAA GATATTCTGG TAATGAACAC AGTTGAAGCA ATTTTTTTCA TTTGTTCCTC 6981 .......... .......... .......... .......... .......... .......... 81 ACCTCAGTCT GATCTCTGTT TCTTTAGTTT CTTTGTTGTT TCTGATTCTT CACTTGTTTT 6921 .......... .......... .......... .......... .......... .......... 81 TACTCTTTAA AAACAAATCT TCACAGCAAA ATTAGGAAAG GATGACTAGG TGAGCAATTT 6861 .......... .......... .......... .......... .......... .......... 81 GTAGCACTTT TTTTTTTTTG AAATGTTCAC AATTTTATAT ATCAGTGCAT AAAAATTGAG 6801 .......... .......... .......... .......... .......... .......... 81 CCAACAACCA TAATTTGAGA CATGACAACC TGATCAAATA CTATCCTATA CACTTATATA 6741 .......... .......... .......... .......... .......... .......... 81 TATTCTAAAC ACACTAAGAT AGATTCAGTA GCCAGTGTGA GTTCTTTTTT ACACAAACAA 6681 .......... .......... .......... .......... .......... .......... 81 AAAAATAAGA AAAGTGAATT CATCTTGATC TACTGAGTCG GACTATCCTT GCTTGAAAGA 6621 .......... .......... .......... .......... .......... .......... 81 AATCTCTGAT TCCTTTCCCT ACAGACAGAC CACCATATCT GAAATGGTAT CCTTTTTCAT 6561 .......... .......... .......... .......... .......... .......... 81 CTCCTTTATG CCTGGGTATA AGATGACTCC TCTATTCCGG CATGTCACTC TTTCCCCTAC 6501 .......... .......... .......... .......... .......... .......... 81 TCCCCCTGGC CTCCGCGTCA ATTTTTCTTC TAGAAATGAA TCTTTAGAAG CAAAATCATG 6441 .......... .......... .......... .......... .......... .......... 81 AGTTGGTGAA ACAGGGAAAG GTGCTATTTG CAACATTGTA TACACAAATT TGCCTTCCTT 6381 .......... .......... .......... .......... .......... .......... 81 TTTTTCCATG TATAAATGTT ACTCTTCTTT GTTTCATTTT ATGTGATGCA GTTTAATTGG 6321 .......... .......... .......... .......... .......... .......... 81 GCACAAAATT TGAAAGGGAG AGTAAGACTT TTGAAATTTG TGGTCTAAAA CAAGTCTTAG 6261 .......... .......... .......... .......... .......... .......... 81 ATATCTGTGT GACTGCGGTA AGATGAGAAT TTTAAAGTTA AATACAGAAC GACATTATTG 6201 .......... .......... .......... .......... .......... .......... 81 CTTTTGGGAC AACTAAAAAC TAAAATGCAT CACATAAGTT GGGACAGGTG GAGTAGTTTG 6141 .......... .......... .......... .......... .......... .......... 81 GAAAATTGTA ATTTGTAATC CATCTTTGAA GAACGCACTT TTTTCTTGTC TTGTTGGTTG 6081 .......... .......... .......... .......... .......... .......... 81 GATTATGGTT CCTGCATTGA AAATGTAAAT TTGTTTCTAT TATTGATTAA TGAGGTGTGG 6021 .......... .......... .......... .......... .......... .......... 81 TTCGAACTGA CAACATTTAT TTTGCTTGTA TTATTGATAC TGATGTGTAC TCATGAATTG 5961 .......... .......... .......... .......... .......... .......... 81 GTTGTGAGTA TAGGATATCT CTTAATTAAT ACAATTTGAA CCTTAAAGAT ATAAAAAGCG 5901 .......... .......... .......... .......... .......... .......... 81 AATTCATCGT CCAACTGGTT TATTATCTTC AAATTTGAAA ACAATATAAA TTGAATAGAA 5841 .......... .......... .......... .......... .......... .......... 81 TTAACCCAAA ATATCTAAAC ATGAATCTAA TTAAGCCAAA AGCAATAGAA CAAAACAAAT 5781 .......... .......... .......... .......... .......... .......... 81 ATATGTCCCT CTTTGGACTT TCTAGGCGTT ACCACCATTT TACGTTAAAA GGCAATGGTG 5721 .......... .......... .......... .......... .......... .......... 81 CACCCGTCAC CTTAAAACCC TGGTATGATT CTGGTGTTGA GTAAGGTAAA TGTGTTCTAG 5661 .......... .......... .......... .......... .......... .......... 81 AGTTCCTAAC TCTCTGGATG TGCACATTCT ACTTGATGCA TTCATCCTGA TATTAGTGTT 5601 .......... .......... .......... .......... .......... .......... 81 CACAATGATC TGCTTCTTTC TAATCTGTTT ATGGGGTTGC AGATTAATCT TCACAAAATT 5541 |||||||| |||||||||| .......... .......... .......... .......... ..ATTAATCT TCACAAAATT 99 AACTCTAAGC TCCAGAATCA ATCTGAGGGA AAAAGAAAAC ATGTTTACGT GGAAAATGGG 5481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCTAAGC TCCAGAATCA ATCTGAGGGA AAAAGAAAAC ATGTTTACGT GGAAAATGGG 159 GAGACATTCA ACTATATTGA TAGCCTTCCA GAAGAGAGAA ACCATCCTAC TGCAATCACT 5421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACATTCA ACTATATTGA TAGCCTTCCA GAAGAGAGAA ACCATCCTAC TGCAATCACT 219 GGATCTCAGG CTCTCACATC CACAGGTATT CAGCAGCACA AGCAAGTTGA TGGATCTGAT 5361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTCAGG CTCTCACATC CACAGGTATT CAGCAGCACA AGCAAGTTGA TGGATCTGAT 279 TTTGGGTATT TTCAGGATGG CTTTTCTTAC TTATCTTCAG ATTACAGTCA TTCAGATCAG 5301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGTATT TTCAGGATGG CTTTTCTTAC TTATCTTCAG ATTACAGTCA TTCAGATCAG 339 ACTACGGTTT GTCCAACCCT ATCCACAATT AAATCTAAAA AAAGCTGTCT CGTGACTCTT 5241 |||||| ACTACG.... .......... .......... .......... .......... .......... 345 TCTGCTAAGG ACTCCTGTGC GACAAATCAG ATGCAGTTGA TGGAAAGCTT ACCTGATCCT 5181 .......... .......... .......... .......... .......... .......... 345 TCTTTTCAGG TGGCTGGTAT AGGAACAAAT GAAAATATGG TGGACAAGCT ACTTCAACGT 5121 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TGGCTGGTAT AGGAACAAAT GAAAATATGG TGGACAAGCT ACTTCAACGT 396 TCTGTAATTA AGCATGAAAA CAACAGGGAT C 5090 |||||||||| |||||||||| |||||||||| | TCTGTAATTA AGCATGAAAA CAACAGGGAT C 427 hqPGS_C04HBa0127E11.1-_SGN-E318635+ (7700 7620,5558 5295,5171 5090) ******************************************************************************** EST sequence 89 +strand 420 n (File: SGN-E295033+) 1 AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT 61 TCAAGATAGT GCCCATAAAG AAGATTAATC TTCACAAAAT TAACTCTAAG CTTCAGAATC 121 AATCTGAGGG AAAAAGAAAA CATGTTTACG TGGAAAATGG GGAGACATTC AACTATATTG 181 ATAGCCTTCC AGAAGAGAGA AACCATCCTA CTGCGATCAC TGGATCTCAA GCTCTCACAT 241 CCACAGGTAT TCATCAGCAC AAGCTAGTTG ATGGATCTGA TATTGGGTAT TTTCAGGATG 301 GCTTTTCTTA CTTATCTTCA GATTACAGTC ATTCAGATCA GACTACGGTG GCTGGTATAC 361 GAACACATGA AAATGTGGTG GACAAGCTAC TTGAACGTGT CTGTAATTAA GCATGAAAAC Predicted gene structure (within gDNA segment 8302 to 4490): Exon 1 7702 7620 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 0.98) Exon 2 5558 5295 ( 264 n); cDNA 84 347 ( 264 n); score: 0.977 Intron 2 5294 5172 ( 123 n); Pd: 0.611 (s: 1.00), Pa: 0.747 (s: 0.92) Exon 3 5171 5100 ( 72 n); cDNA 348 420 ( 73 n); score: 0.910 MATCH C04HBa0127E11.1- SGN-E295033+ 0.970 419 0.998 C PGS_C04HBa0127E11.1-_SGN-E295033+ (7702 7620,5558 5295,5171 5100) Alignment (genomic DNA sequence = upper lines): AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT 7643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT 60 TCAAGATAGT GCCCATAAAG AAGGTAAATT ATTAATTTAG TGTACATCGG GCTTTCTGTT 7583 |||||||||| |||||||||| ||| TCAAGATAGT GCCCATAAAG AAG....... .......... .......... .......... 83 TAGCCTTTTA TTCCACCTCA GCTTAACCTT TAAGGTGTTC TATTTGAAGA TTGTTGAATT 7523 .......... .......... .......... .......... .......... .......... 83 CAATGGAGGG ATCAGGTTGA GATTTTGTCT AACATGCACA CATGAACTAG TGATAGAGTG 7463 .......... .......... .......... .......... .......... .......... 83 TTATTGGCGT TCAGCATGTT CATCTAATTT AAAATCTTAA GCTGATAGAG AGAACACACT 7403 .......... .......... .......... .......... .......... .......... 83 TTTATTTACT TAATTATGTT TCCAACATGT CCTTTACATT TGGACTTGAT TCTTTTTCAT 7343 .......... .......... .......... .......... .......... .......... 83 GGGCCAAGCA TATGTAGATT CTTTTTTGTT AATGGGTAGC AATGAATTCC AAACCCAGTA 7283 .......... .......... .......... .......... .......... .......... 83 CATGTGGCTG CGGTAATACC GTGTTGACTC TGTCATCATC TCATCTAAAA ACTCATGTTA 7223 .......... .......... .......... .......... .......... .......... 83 TATCTTTCAT AAGCACTCTT TCTTTTCCAA AATCTTGTCT TAAGCAAGGA AATACATGCA 7163 .......... .......... .......... .......... .......... .......... 83 TTGATGAGGT GCACTGTCGC CGGCACCAAT GGTTTTGACT CTATTTTTAT GCGTGAAACT 7103 .......... .......... .......... .......... .......... .......... 83 TCTCAAGAAA CATATATGAA CAAAGTGGCT CCCCTCATGT AAAGGGACAA CTGGGTGCAC 7043 .......... .......... .......... .......... .......... .......... 83 TGTTTCATCT AAGATATTCT GGTAATGAAC ACAGTTGAAG CAATTTTTTT CATTTGTTCC 6983 .......... .......... .......... .......... .......... .......... 83 TCACCTCAGT CTGATCTCTG TTTCTTTAGT TTCTTTGTTG TTTCTGATTC TTCACTTGTT 6923 .......... .......... .......... .......... .......... .......... 83 TTTACTCTTT AAAAACAAAT CTTCACAGCA AAATTAGGAA AGGATGACTA GGTGAGCAAT 6863 .......... .......... .......... .......... .......... .......... 83 TTGTAGCACT TTTTTTTTTT TGAAATGTTC ACAATTTTAT ATATCAGTGC ATAAAAATTG 6803 .......... .......... .......... .......... .......... .......... 83 AGCCAACAAC CATAATTTGA GACATGACAA CCTGATCAAA TACTATCCTA TACACTTATA 6743 .......... .......... .......... .......... .......... .......... 83 TATATTCTAA ACACACTAAG ATAGATTCAG TAGCCAGTGT GAGTTCTTTT TTACACAAAC 6683 .......... .......... .......... .......... .......... .......... 83 AAAAAAATAA GAAAAGTGAA TTCATCTTGA TCTACTGAGT CGGACTATCC TTGCTTGAAA 6623 .......... .......... .......... .......... .......... .......... 83 GAAATCTCTG ATTCCTTTCC CTACAGACAG ACCACCATAT CTGAAATGGT ATCCTTTTTC 6563 .......... .......... .......... .......... .......... .......... 83 ATCTCCTTTA TGCCTGGGTA TAAGATGACT CCTCTATTCC GGCATGTCAC TCTTTCCCCT 6503 .......... .......... .......... .......... .......... .......... 83 ACTCCCCCTG GCCTCCGCGT CAATTTTTCT TCTAGAAATG AATCTTTAGA AGCAAAATCA 6443 .......... .......... .......... .......... .......... .......... 83 TGAGTTGGTG AAACAGGGAA AGGTGCTATT TGCAACATTG TATACACAAA TTTGCCTTCC 6383 .......... .......... .......... .......... .......... .......... 83 TTTTTTTCCA TGTATAAATG TTACTCTTCT TTGTTTCATT TTATGTGATG CAGTTTAATT 6323 .......... .......... .......... .......... .......... .......... 83 GGGCACAAAA TTTGAAAGGG AGAGTAAGAC TTTTGAAATT TGTGGTCTAA AACAAGTCTT 6263 .......... .......... .......... .......... .......... .......... 83 AGATATCTGT GTGACTGCGG TAAGATGAGA ATTTTAAAGT TAAATACAGA ACGACATTAT 6203 .......... .......... .......... .......... .......... .......... 83 TGCTTTTGGG ACAACTAAAA ACTAAAATGC ATCACATAAG TTGGGACAGG TGGAGTAGTT 6143 .......... .......... .......... .......... .......... .......... 83 TGGAAAATTG TAATTTGTAA TCCATCTTTG AAGAACGCAC TTTTTTCTTG TCTTGTTGGT 6083 .......... .......... .......... .......... .......... .......... 83 TGGATTATGG TTCCTGCATT GAAAATGTAA ATTTGTTTCT ATTATTGATT AATGAGGTGT 6023 .......... .......... .......... .......... .......... .......... 83 GGTTCGAACT GACAACATTT ATTTTGCTTG TATTATTGAT ACTGATGTGT ACTCATGAAT 5963 .......... .......... .......... .......... .......... .......... 83 TGGTTGTGAG TATAGGATAT CTCTTAATTA ATACAATTTG AACCTTAAAG ATATAAAAAG 5903 .......... .......... .......... .......... .......... .......... 83 CGAATTCATC GTCCAACTGG TTTATTATCT TCAAATTTGA AAACAATATA AATTGAATAG 5843 .......... .......... .......... .......... .......... .......... 83 AATTAACCCA AAATATCTAA ACATGAATCT AATTAAGCCA AAAGCAATAG AACAAAACAA 5783 .......... .......... .......... .......... .......... .......... 83 ATATATGTCC CTCTTTGGAC TTTCTAGGCG TTACCACCAT TTTACGTTAA AAGGCAATGG 5723 .......... .......... .......... .......... .......... .......... 83 TGCACCCGTC ACCTTAAAAC CCTGGTATGA TTCTGGTGTT GAGTAAGGTA AATGTGTTCT 5663 .......... .......... .......... .......... .......... .......... 83 AGAGTTCCTA ACTCTCTGGA TGTGCACATT CTACTTGATG CATTCATCCT GATATTAGTG 5603 .......... .......... .......... .......... .......... .......... 83 TTCACAATGA TCTGCTTCTT TCTAATCTGT TTATGGGGTT GCAGATTAAT CTTCACAAAA 5543 |||||| |||||||||| .......... .......... .......... .......... ....ATTAAT CTTCACAAAA 99 TTAACTCTAA GCTCCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG 5483 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACTCTAA GCTTCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG 159 GGGAGACATT CAACTATATT GATAGCCTTC CAGAAGAGAG AAACCATCCT ACTGCAATCA 5423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GGGAGACATT CAACTATATT GATAGCCTTC CAGAAGAGAG AAACCATCCT ACTGCGATCA 219 CTGGATCTCA GGCTCTCACA TCCACAGGTA TTCAGCAGCA CAAGCAAGTT GATGGATCTG 5363 |||||||||| ||||||||| |||||||||| |||| ||||| ||||| |||| |||||||||| CTGGATCTCA AGCTCTCACA TCCACAGGTA TTCATCAGCA CAAGCTAGTT GATGGATCTG 279 ATTTTGGGTA TTTTCAGGAT GGCTTTTCTT ACTTATCTTC AGATTACAGT CATTCAGATC 5303 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTGGGTA TTTTCAGGAT GGCTTTTCTT ACTTATCTTC AGATTACAGT CATTCAGATC 339 AGACTACGGT TTGTCCAACC CTATCCACAA TTAAATCTAA AAAAAGCTGT CTCGTGACTC 5243 |||||||| AGACTACG.. .......... .......... .......... .......... .......... 347 TTTCTGCTAA GGACTCCTGT GCGACAAATC AGATGCAGTT GATGGAAAGC TTACCTGATC 5183 .......... .......... .......... .......... .......... .......... 347 CTTCTTTTCA GGTGGCTGGT ATAGGAACAA ATGAAAATAT GGTGGACAAG CTACTTCAAC 5123 ||||||||| ||| ||||| |||||||| | |||||||||| |||||| ||| .......... .GTGGCTGGT ATACGAACAC ATGAAAATGT GGTGGACAAG CTACTTGAAC 396 GT-TCTGTAA TTAAGCATGA AAAC 5100 || ||||||| |||||||||| |||| GTGTCTGTAA TTAAGCATGA AAAC 420 hqPGS_C04HBa0127E11.1-_SGN-E295033+ (7702 7620,5558 5295,5171 5100) ******************************************************************************** EST sequence 58 +strand 621 n (File: SGN-E252288+) 1 ACTTTGAGGA TGTTGACAGG ATGTTCGGAA GTTGTGATTC AACATTTGGA GTTGGAGCTA 61 GTATCGAAGA TGACCTTGGT TGGTTTTCGT CATCTGGTGT TATTGAAGGA TCTGGAGGTG 121 GATTGAGGTC AGATTTGGAG TTTGCCTTCT CAACATCCAG TGCACTTGAA AATATCTCTG 181 GAATGCAGGA AGCTTCCAGG TCAAAGGAAA CAGGCAATTC AATTAATGAT TCTGGCACTA 241 AAGATCAACT CTTCAGTCAG ACTGGCAGTT CAATGCCATC AGAGGATGAA TCAGCCGTTC 301 TGAGTCATCT ATCTTTTACA AATGGTTCAA GTGATTCAGA TTTCAAGATA GTGCCCATAA 361 AGAAGATTAA TCTTCACAAA ATTAACTCTA AGCTCCAGAA TCAATCTGAG GGAAAAAGAA 421 AACATGTTTA CGTGGAAAAT GGGGAGACAT TCAACTATAT TGATAGCCTT CCAGAAGAGA 481 GAAACCATCC TACTGCAATC ACTGGATCTC AGGCTCTCAC ATCCACAGGT ATTCAGCAGC 541 ACAAGCAAGT TGATGGATCT GATTTTGGGT ATTTTCAGGA TGGCTTTTCT TACTTATCTT 601 CAGATTACAG TCATTCAGAT C Predicted gene structure (within gDNA segment 8827 to 4693): Exon 1 8084 8057 ( 28 n); cDNA 1 28 ( 28 n); score: 1.000 Intron 1 8056 7957 ( 100 n); Pd: 0.991 (s: 0), Pa: 0.894 (s: 1.00) Exon 2 7956 7620 ( 337 n); cDNA 29 365 ( 337 n); score: 1.000 Intron 2 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 3 5558 5303 ( 256 n); cDNA 366 621 ( 256 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E252288+ 1.000 621 1.000 C PGS_C04HBa0127E11.1-_SGN-E252288+ (8084 8057,7956 7620,5558 5303) Alignment (genomic DNA sequence = upper lines): ACTTTGAGGA TGTTGACAGG ATGTTCGGGT AATTGTTGTC TCTAGTGTTT TTCATGTGAT 8025 |||||||||| |||||||||| |||||||| ACTTTGAGGA TGTTGACAGG ATGTTCGG.. .......... .......... .......... 28 TTTCTTTTTT TATTCAGAGG AGACTGACTA ATACTTTATG ATTGCTCACT GTTTATAATA 7965 .......... .......... .......... .......... .......... .......... 28 TCTTCCAGAA GTTGTGATTC AACATTTGGA GTTGGAGCTA GTATCGAAGA TGACCTTGGT 7905 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AA GTTGTGATTC AACATTTGGA GTTGGAGCTA GTATCGAAGA TGACCTTGGT 80 TGGTTTTCGT CATCTGGTGT TATTGAAGGA TCTGGAGGTG GATTGAGGTC AGATTTGGAG 7845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTTTCGT CATCTGGTGT TATTGAAGGA TCTGGAGGTG GATTGAGGTC AGATTTGGAG 140 TTTGCCTTCT CAACATCCAG TGCACTTGAA AATATCTCTG GAATGCAGGA AGCTTCCAGG 7785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCTTCT CAACATCCAG TGCACTTGAA AATATCTCTG GAATGCAGGA AGCTTCCAGG 200 TCAAAGGAAA CAGGCAATTC AATTAATGAT TCTGGCACTA AAGATCAACT CTTCAGTCAG 7725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAGGAAA CAGGCAATTC AATTAATGAT TCTGGCACTA AAGATCAACT CTTCAGTCAG 260 ACTGGCAGTT CAATGCCATC AGAGGATGAA TCAGCCGTTC TGAGTCATCT ATCTTTTACA 7665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGGCAGTT CAATGCCATC AGAGGATGAA TCAGCCGTTC TGAGTCATCT ATCTTTTACA 320 AATGGTTCAA GTGATTCAGA TTTCAAGATA GTGCCCATAA AGAAGGTAAA TTATTAATTT 7605 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AATGGTTCAA GTGATTCAGA TTTCAAGATA GTGCCCATAA AGAAG..... .......... 365 AGTGTACATC GGGCTTTCTG TTTAGCCTTT TATTCCACCT CAGCTTAACC TTTAAGGTGT 7545 .......... .......... .......... .......... .......... .......... 365 TCTATTTGAA GATTGTTGAA TTCAATGGAG GGATCAGGTT GAGATTTTGT CTAACATGCA 7485 .......... .......... .......... .......... .......... .......... 365 CACATGAACT AGTGATAGAG TGTTATTGGC GTTCAGCATG TTCATCTAAT TTAAAATCTT 7425 .......... .......... .......... .......... .......... .......... 365 AAGCTGATAG AGAGAACACA CTTTTATTTA CTTAATTATG TTTCCAACAT GTCCTTTACA 7365 .......... .......... .......... .......... .......... .......... 365 TTTGGACTTG ATTCTTTTTC ATGGGCCAAG CATATGTAGA TTCTTTTTTG TTAATGGGTA 7305 .......... .......... .......... .......... .......... .......... 365 GCAATGAATT CCAAACCCAG TACATGTGGC TGCGGTAATA CCGTGTTGAC TCTGTCATCA 7245 .......... .......... .......... .......... .......... .......... 365 TCTCATCTAA AAACTCATGT TATATCTTTC ATAAGCACTC TTTCTTTTCC AAAATCTTGT 7185 .......... .......... .......... .......... .......... .......... 365 CTTAAGCAAG GAAATACATG CATTGATGAG GTGCACTGTC GCCGGCACCA ATGGTTTTGA 7125 .......... .......... .......... .......... .......... .......... 365 CTCTATTTTT ATGCGTGAAA CTTCTCAAGA AACATATATG AACAAAGTGG CTCCCCTCAT 7065 .......... .......... .......... .......... .......... .......... 365 GTAAAGGGAC AACTGGGTGC ACTGTTTCAT CTAAGATATT CTGGTAATGA ACACAGTTGA 7005 .......... .......... .......... .......... .......... .......... 365 AGCAATTTTT TTCATTTGTT CCTCACCTCA GTCTGATCTC TGTTTCTTTA GTTTCTTTGT 6945 .......... .......... .......... .......... .......... .......... 365 TGTTTCTGAT TCTTCACTTG TTTTTACTCT TTAAAAACAA ATCTTCACAG CAAAATTAGG 6885 .......... .......... .......... .......... .......... .......... 365 AAAGGATGAC TAGGTGAGCA ATTTGTAGCA CTTTTTTTTT TTTGAAATGT TCACAATTTT 6825 .......... .......... .......... .......... .......... .......... 365 ATATATCAGT GCATAAAAAT TGAGCCAACA ACCATAATTT GAGACATGAC AACCTGATCA 6765 .......... .......... .......... .......... .......... .......... 365 AATACTATCC TATACACTTA TATATATTCT AAACACACTA AGATAGATTC AGTAGCCAGT 6705 .......... .......... .......... .......... .......... .......... 365 GTGAGTTCTT TTTTACACAA ACAAAAAAAT AAGAAAAGTG AATTCATCTT GATCTACTGA 6645 .......... .......... .......... .......... .......... .......... 365 GTCGGACTAT CCTTGCTTGA AAGAAATCTC TGATTCCTTT CCCTACAGAC AGACCACCAT 6585 .......... .......... .......... .......... .......... .......... 365 ATCTGAAATG GTATCCTTTT TCATCTCCTT TATGCCTGGG TATAAGATGA CTCCTCTATT 6525 .......... .......... .......... .......... .......... .......... 365 CCGGCATGTC ACTCTTTCCC CTACTCCCCC TGGCCTCCGC GTCAATTTTT CTTCTAGAAA 6465 .......... .......... .......... .......... .......... .......... 365 TGAATCTTTA GAAGCAAAAT CATGAGTTGG TGAAACAGGG AAAGGTGCTA TTTGCAACAT 6405 .......... .......... .......... .......... .......... .......... 365 TGTATACACA AATTTGCCTT CCTTTTTTTC CATGTATAAA TGTTACTCTT CTTTGTTTCA 6345 .......... .......... .......... .......... .......... .......... 365 TTTTATGTGA TGCAGTTTAA TTGGGCACAA AATTTGAAAG GGAGAGTAAG ACTTTTGAAA 6285 .......... .......... .......... .......... .......... .......... 365 TTTGTGGTCT AAAACAAGTC TTAGATATCT GTGTGACTGC GGTAAGATGA GAATTTTAAA 6225 .......... .......... .......... .......... .......... .......... 365 GTTAAATACA GAACGACATT ATTGCTTTTG GGACAACTAA AAACTAAAAT GCATCACATA 6165 .......... .......... .......... .......... .......... .......... 365 AGTTGGGACA GGTGGAGTAG TTTGGAAAAT TGTAATTTGT AATCCATCTT TGAAGAACGC 6105 .......... .......... .......... .......... .......... .......... 365 ACTTTTTTCT TGTCTTGTTG GTTGGATTAT GGTTCCTGCA TTGAAAATGT AAATTTGTTT 6045 .......... .......... .......... .......... .......... .......... 365 CTATTATTGA TTAATGAGGT GTGGTTCGAA CTGACAACAT TTATTTTGCT TGTATTATTG 5985 .......... .......... .......... .......... .......... .......... 365 ATACTGATGT GTACTCATGA ATTGGTTGTG AGTATAGGAT ATCTCTTAAT TAATACAATT 5925 .......... .......... .......... .......... .......... .......... 365 TGAACCTTAA AGATATAAAA AGCGAATTCA TCGTCCAACT GGTTTATTAT CTTCAAATTT 5865 .......... .......... .......... .......... .......... .......... 365 GAAAACAATA TAAATTGAAT AGAATTAACC CAAAATATCT AAACATGAAT CTAATTAAGC 5805 .......... .......... .......... .......... .......... .......... 365 CAAAAGCAAT AGAACAAAAC AAATATATGT CCCTCTTTGG ACTTTCTAGG CGTTACCACC 5745 .......... .......... .......... .......... .......... .......... 365 ATTTTACGTT AAAAGGCAAT GGTGCACCCG TCACCTTAAA ACCCTGGTAT GATTCTGGTG 5685 .......... .......... .......... .......... .......... .......... 365 TTGAGTAAGG TAAATGTGTT CTAGAGTTCC TAACTCTCTG GATGTGCACA TTCTACTTGA 5625 .......... .......... .......... .......... .......... .......... 365 TGCATTCATC CTGATATTAG TGTTCACAAT GATCTGCTTC TTTCTAATCT GTTTATGGGG 5565 .......... .......... .......... .......... .......... .......... 365 TTGCAGATTA ATCTTCACAA AATTAACTCT AAGCTCCAGA ATCAATCTGA GGGAAAAAGA 5505 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......ATTA ATCTTCACAA AATTAACTCT AAGCTCCAGA ATCAATCTGA GGGAAAAAGA 419 AAACATGTTT ACGTGGAAAA TGGGGAGACA TTCAACTATA TTGATAGCCT TCCAGAAGAG 5445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACATGTTT ACGTGGAAAA TGGGGAGACA TTCAACTATA TTGATAGCCT TCCAGAAGAG 479 AGAAACCATC CTACTGCAAT CACTGGATCT CAGGCTCTCA CATCCACAGG TATTCAGCAG 5385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACCATC CTACTGCAAT CACTGGATCT CAGGCTCTCA CATCCACAGG TATTCAGCAG 539 CACAAGCAAG TTGATGGATC TGATTTTGGG TATTTTCAGG ATGGCTTTTC TTACTTATCT 5325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAGCAAG TTGATGGATC TGATTTTGGG TATTTTCAGG ATGGCTTTTC TTACTTATCT 599 TCAGATTACA GTCATTCAGA TC 5303 |||||||||| |||||||||| || TCAGATTACA GTCATTCAGA TC 621 hqPGS_C04HBa0127E11.1-_SGN-E252288+ (8084 8057,7956 7620,5558 5303) ******************************************************************************** EST sequence 153 +strand 494 n (File: SGN-E200964+) 1 TTATATTATA ACTGGCCTGA GATGGAAAAC TTTGAGGATG TTGACAGGAT GTTCGGAAGT 61 TGTGATTCAA CATTTGGAGT TGGAGCTAGT ATCGAAGATG ACCTTGGTTG GTTTTCGTCA 121 TCTGGTGTTA TTGAAGGATC TGGAGGTGGA TTGAGGTCAG ATTTGGAGTT TGCCTTCTCA 181 ACATCCAGTG CACTTGAAAA TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA 241 GGCAATTCAA TTAATGATTC TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA 301 ATGCCATCAG AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT 361 GATTCAGATT TCAAGATAGT GCCCATAAAG AAGATTAATC TTCACAAAAT TAACTCTAAG 421 CTCCAGAATC AATCTGAGGG AAAAAGAAAA CATGTTTACG TGGAAAATGG GGAGACATTC 481 AACTATATTG ATAG Predicted gene structure (within gDNA segment 8712 to 4848): Exon 1 8112 8057 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 8056 7957 ( 100 n); Pd: 0.991 (s: 1.00), Pa: 0.894 (s: 1.00) Exon 2 7956 7620 ( 337 n); cDNA 57 393 ( 337 n); score: 1.000 Intron 2 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 3 5558 5458 ( 101 n); cDNA 394 494 ( 101 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E200964+ 1.000 494 1.000 C PGS_C04HBa0127E11.1-_SGN-E200964+ (8112 8057,7956 7620,5558 5458) Alignment (genomic DNA sequence = upper lines): TTATATTATA ACTGGCCTGA GATGGAAAAC TTTGAGGATG TTGACAGGAT GTTCGGGTAA 8053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTATATTATA ACTGGCCTGA GATGGAAAAC TTTGAGGATG TTGACAGGAT GTTCGG.... 56 TTGTTGTCTC TAGTGTTTTT CATGTGATTT TCTTTTTTTA TTCAGAGGAG ACTGACTAAT 7993 .......... .......... .......... .......... .......... .......... 56 ACTTTATGAT TGCTCACTGT TTATAATATC TTCCAGAAGT TGTGATTCAA CATTTGGAGT 7933 |||| |||||||||| |||||||||| .......... .......... .......... ......AAGT TGTGATTCAA CATTTGGAGT 80 TGGAGCTAGT ATCGAAGATG ACCTTGGTTG GTTTTCGTCA TCTGGTGTTA TTGAAGGATC 7873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCTAGT ATCGAAGATG ACCTTGGTTG GTTTTCGTCA TCTGGTGTTA TTGAAGGATC 140 TGGAGGTGGA TTGAGGTCAG ATTTGGAGTT TGCCTTCTCA ACATCCAGTG CACTTGAAAA 7813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGTGGA TTGAGGTCAG ATTTGGAGTT TGCCTTCTCA ACATCCAGTG CACTTGAAAA 200 TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA GGCAATTCAA TTAATGATTC 7753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA GGCAATTCAA TTAATGATTC 260 TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA ATGCCATCAG AGGATGAATC 7693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA ATGCCATCAG AGGATGAATC 320 AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT TCAAGATAGT 7633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT TCAAGATAGT 380 GCCCATAAAG AAGGTAAATT ATTAATTTAG TGTACATCGG GCTTTCTGTT TAGCCTTTTA 7573 |||||||||| ||| GCCCATAAAG AAG....... .......... .......... .......... .......... 393 TTCCACCTCA GCTTAACCTT TAAGGTGTTC TATTTGAAGA TTGTTGAATT CAATGGAGGG 7513 .......... .......... .......... .......... .......... .......... 393 ATCAGGTTGA GATTTTGTCT AACATGCACA CATGAACTAG TGATAGAGTG TTATTGGCGT 7453 .......... .......... .......... .......... .......... .......... 393 TCAGCATGTT CATCTAATTT AAAATCTTAA GCTGATAGAG AGAACACACT TTTATTTACT 7393 .......... .......... .......... .......... .......... .......... 393 TAATTATGTT TCCAACATGT CCTTTACATT TGGACTTGAT TCTTTTTCAT GGGCCAAGCA 7333 .......... .......... .......... .......... .......... .......... 393 TATGTAGATT CTTTTTTGTT AATGGGTAGC AATGAATTCC AAACCCAGTA CATGTGGCTG 7273 .......... .......... .......... .......... .......... .......... 393 CGGTAATACC GTGTTGACTC TGTCATCATC TCATCTAAAA ACTCATGTTA TATCTTTCAT 7213 .......... .......... .......... .......... .......... .......... 393 AAGCACTCTT TCTTTTCCAA AATCTTGTCT TAAGCAAGGA AATACATGCA TTGATGAGGT 7153 .......... .......... .......... .......... .......... .......... 393 GCACTGTCGC CGGCACCAAT GGTTTTGACT CTATTTTTAT GCGTGAAACT TCTCAAGAAA 7093 .......... .......... .......... .......... .......... .......... 393 CATATATGAA CAAAGTGGCT CCCCTCATGT AAAGGGACAA CTGGGTGCAC TGTTTCATCT 7033 .......... .......... .......... .......... .......... .......... 393 AAGATATTCT GGTAATGAAC ACAGTTGAAG CAATTTTTTT CATTTGTTCC TCACCTCAGT 6973 .......... .......... .......... .......... .......... .......... 393 CTGATCTCTG TTTCTTTAGT TTCTTTGTTG TTTCTGATTC TTCACTTGTT TTTACTCTTT 6913 .......... .......... .......... .......... .......... .......... 393 AAAAACAAAT CTTCACAGCA AAATTAGGAA AGGATGACTA GGTGAGCAAT TTGTAGCACT 6853 .......... .......... .......... .......... .......... .......... 393 TTTTTTTTTT TGAAATGTTC ACAATTTTAT ATATCAGTGC ATAAAAATTG AGCCAACAAC 6793 .......... .......... .......... .......... .......... .......... 393 CATAATTTGA GACATGACAA CCTGATCAAA TACTATCCTA TACACTTATA TATATTCTAA 6733 .......... .......... .......... .......... .......... .......... 393 ACACACTAAG ATAGATTCAG TAGCCAGTGT GAGTTCTTTT TTACACAAAC AAAAAAATAA 6673 .......... .......... .......... .......... .......... .......... 393 GAAAAGTGAA TTCATCTTGA TCTACTGAGT CGGACTATCC TTGCTTGAAA GAAATCTCTG 6613 .......... .......... .......... .......... .......... .......... 393 ATTCCTTTCC CTACAGACAG ACCACCATAT CTGAAATGGT ATCCTTTTTC ATCTCCTTTA 6553 .......... .......... .......... .......... .......... .......... 393 TGCCTGGGTA TAAGATGACT CCTCTATTCC GGCATGTCAC TCTTTCCCCT ACTCCCCCTG 6493 .......... .......... .......... .......... .......... .......... 393 GCCTCCGCGT CAATTTTTCT TCTAGAAATG AATCTTTAGA AGCAAAATCA TGAGTTGGTG 6433 .......... .......... .......... .......... .......... .......... 393 AAACAGGGAA AGGTGCTATT TGCAACATTG TATACACAAA TTTGCCTTCC TTTTTTTCCA 6373 .......... .......... .......... .......... .......... .......... 393 TGTATAAATG TTACTCTTCT TTGTTTCATT TTATGTGATG CAGTTTAATT GGGCACAAAA 6313 .......... .......... .......... .......... .......... .......... 393 TTTGAAAGGG AGAGTAAGAC TTTTGAAATT TGTGGTCTAA AACAAGTCTT AGATATCTGT 6253 .......... .......... .......... .......... .......... .......... 393 GTGACTGCGG TAAGATGAGA ATTTTAAAGT TAAATACAGA ACGACATTAT TGCTTTTGGG 6193 .......... .......... .......... .......... .......... .......... 393 ACAACTAAAA ACTAAAATGC ATCACATAAG TTGGGACAGG TGGAGTAGTT TGGAAAATTG 6133 .......... .......... .......... .......... .......... .......... 393 TAATTTGTAA TCCATCTTTG AAGAACGCAC TTTTTTCTTG TCTTGTTGGT TGGATTATGG 6073 .......... .......... .......... .......... .......... .......... 393 TTCCTGCATT GAAAATGTAA ATTTGTTTCT ATTATTGATT AATGAGGTGT GGTTCGAACT 6013 .......... .......... .......... .......... .......... .......... 393 GACAACATTT ATTTTGCTTG TATTATTGAT ACTGATGTGT ACTCATGAAT TGGTTGTGAG 5953 .......... .......... .......... .......... .......... .......... 393 TATAGGATAT CTCTTAATTA ATACAATTTG AACCTTAAAG ATATAAAAAG CGAATTCATC 5893 .......... .......... .......... .......... .......... .......... 393 GTCCAACTGG TTTATTATCT TCAAATTTGA AAACAATATA AATTGAATAG AATTAACCCA 5833 .......... .......... .......... .......... .......... .......... 393 AAATATCTAA ACATGAATCT AATTAAGCCA AAAGCAATAG AACAAAACAA ATATATGTCC 5773 .......... .......... .......... .......... .......... .......... 393 CTCTTTGGAC TTTCTAGGCG TTACCACCAT TTTACGTTAA AAGGCAATGG TGCACCCGTC 5713 .......... .......... .......... .......... .......... .......... 393 ACCTTAAAAC CCTGGTATGA TTCTGGTGTT GAGTAAGGTA AATGTGTTCT AGAGTTCCTA 5653 .......... .......... .......... .......... .......... .......... 393 ACTCTCTGGA TGTGCACATT CTACTTGATG CATTCATCCT GATATTAGTG TTCACAATGA 5593 .......... .......... .......... .......... .......... .......... 393 TCTGCTTCTT TCTAATCTGT TTATGGGGTT GCAGATTAAT CTTCACAAAA TTAACTCTAA 5533 |||||| |||||||||| |||||||||| .......... .......... .......... ....ATTAAT CTTCACAAAA TTAACTCTAA 419 GCTCCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT 5473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT 479 CAACTATATT GATAG 5458 |||||||||| ||||| CAACTATATT GATAG 494 hqPGS_C04HBa0127E11.1-_SGN-E200964+ (8112 8057,7956 7620,5558 5458) ******************************************************************************** EST sequence 80 +strand 681 n (File: SGN-E335551+) 1 TCTCGAGTTT TTTTTTTTTT TTACTCATTT TAAGGAAGCA TCCTCTCTAG TTGTTTACAG 61 CTAAAATTCT GTAACTGATG CTATAGCTTA AAGATGTAGC TTTGGATGAA GTTTGCATTA 121 GCGATGATCA TATAGTGCCA CATCCTAGTT GTGAACATGC CAATGAAGTT TCTCTCCCAG 181 ACTGATAGCC GTAAGAAACC CCGGTGTGAA ATAATTGGTT TATTAAGAAC CATAGGAGCA 241 ATCTTCTCTT AAATATAATA ATCAGCAAAA GGGCAAAGAA GTTCCTCCTT TATATAGTAC 301 AATGATGGAG AAGGACTCGA GGGCTGGTAG GCTTGATTGC GTGTTCCCTT CTAAACATGA 361 TAAGGACTCT GTTGAAGAAG TTTCAAGTTT ATCATCTGAA AATACTAGGA CATCAAATGA 421 TTGCTCCAGA AGTAACAATA TAGACTCCAT TAGCGGTGAG GTCCAGCCCA ATAACCCCAT 481 TCTGGATGAC AAGAATTCTG CAGTTAGGGA CAACTTGCAT AGCTATCCTC TTGGTCCCGT 541 TTCTCAGGCA GATGATGATC TTTGGTTTTC TTGATAGTAA TCATGAGGAT AAAAAGTAGT 601 ACCGAGCTCT TATATTATAA CTGGCCTGAG ATGGAAAACT TTGAGGATGT TGACAGGATG 661 TTCNGAAAGT TGTGATTCAA C Predicted gene structure (within gDNA segment 9490 to 7269): Exon 1 8713 8057 ( 657 n); cDNA 7 665 ( 659 n); score: 0.985 Intron 1 8056 7957 ( 100 n); Pd: 0.991 (s: 0.98), Pa: 0.894 (s: 0) Exon 2 7956 7942 ( 15 n); cDNA 666 681 ( 16 n); score: 0.833 MATCH C04HBa0127E11.1- SGN-E335551+ 0.985 672 0.987 C PGS_C04HBa0127E11.1-_SGN-E335551+ (8713 8057,7956 7942) Alignment (genomic DNA sequence = upper lines): GTTCTATTTT TGATTTACTC ATTTTAAGGA AGCATCCTCT CTAGTTGTTT ACAGCTAAAA 8654 ||| | |||| | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTTTTT TTTTTTACTC ATTTTAAGGA AGCATCCTCT CTAGTTGTTT ACAGCTAAAA 66 TTCTGTAACT GATGCTATAG CTTAAAGATG TAGCTTTGGA TGAAGTTTGC ATTAGCGATG 8594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTAACT GATGCTATAG CTTAAAGATG TAGCTTTGGA TGAAGTTTGC ATTAGCGATG 126 ATCATATAGT GCCACATCCT AGTTGTGAAC ATGCCAATGA AGTTTCTCTC CCAGACTGAT 8534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATATAGT GCCACATCCT AGTTGTGAAC ATGCCAATGA AGTTTCTCTC CCAGACTGAT 186 AGCCGTAAGA AACCCCGGTG TGAAATAATT GGTTTATTAA GAACCATAGG AGCAATCTTC 8474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCGTAAGA AACCCCGGTG TGAAATAATT GGTTTATTAA GAACCATAGG AGCAATCTTC 246 TCTTAAATAT AATAATCAGC AAAAGGGCAA AGAAGTTCCT CCTTTATATA GTACAATGAT 8414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAAATAT AATAATCAGC AAAAGGGCAA AGAAGTTCCT CCTTTATATA GTACAATGAT 306 GGAGAAGGAC TCGAGGGCTG GTAGGCTTGA TTGCGTGTTC CCTTCTAAAC ATGATAAGGA 8354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAGGAC TCGAGGGCTG GTAGGCTTGA TTGCGTGTTC CCTTCTAAAC ATGATAAGGA 366 CTCTGTTGAA GAAGTTTCAA GTTTATCATC TGAAAATACT AGGACATCAA ATGATTGCTC 8294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGTTGAA GAAGTTTCAA GTTTATCATC TGAAAATACT AGGACATCAA ATGATTGCTC 426 CAGAAGTAAC AATATAGACT CCATTAGCGG TGAGGTCCAG CCCAATAACC CCATTCTGGA 8234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAGTAAC AATATAGACT CCATTAGCGG TGAGGTCCAG CCCAATAACC CCATTCTGGA 486 TGACAAGAAT TCTGCAGTTA GGGACAACTT GCATAGCTAT CCTCTTGGTC CCGTTTCTCA 8174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACAAGAAT TCTGCAGTTA GGGACAACTT GCATAGCTAT CCTCTTGGTC CCGTTTCTCA 546 GGCAGATGAT GATC-TTGGT TTTCTTGATA GTAATCATGA GGAT-AAAAG TAGTACCGAG 8116 |||||||||| |||| ||||| |||||||||| |||||||||| |||| ||||| |||||||||| GGCAGATGAT GATCTTTGGT TTTCTTGATA GTAATCATGA GGATAAAAAG TAGTACCGAG 606 CTCTTATATT ATAACTGGCC TGAGATGGAA AACTTTGAGG ATGTTGACAG GATGTTCGGG 8056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | CTCTTATATT ATAACTGGCC TGAGATGGAA AACTTTGAGG ATGTTGACAG GATGTTCNG. 665 TAATTGTTGT CTCTAGTGTT TTTCATGTGA TTTTCTTTTT TTATTCAGAG GAGACTGACT 7996 .......... .......... .......... .......... .......... .......... 665 AATACTTTAT GATTGCTCAC TGTTTATAAT ATCTTCCAG- AAGTTGTGAT TCAAC 7942 |||||||||| ||||| .......... .......... .......... .........A AAGTTGTGAT TCAAC 681 hqPGS_C04HBa0127E11.1-_SGN-E335551+ (8713 8057,7956 7942) ******************************************************************************** EST sequence 97 +strand 702 n (File: SGN-E214143+) 1 CAAATACATT GATAGCCTTA AAAAGAGCAG AACTTTCGTA TCTCTAACGG TGGAAATAAT 61 CTTACCTTAA TCCAAACTAT GATGATTTCA ATTTAAAGAA ACAAATTCTG TGTTCTATTT 121 TTGATTTACT CATTTTAAGG AAGCATCCTC TCTAGTTGTT TACAGCTAAA ATTCTGTAAC 181 TGATGCTATA GCTTAAAGAT GTAGCTTTGG ATGAAGTTTG CATTAGCGAT GATCATATAG 241 TGCCACATCC TAGTTGTGAA CATGCCAATG AAGTTTCTCT CCCAGACTGA TAGCCGTAAG 301 AAACCCCGGT GTGAAATAAT TGGTTTATTA AGAACCATAG GAGCAATCTT CTCTTAAATA 361 TAATAATCAG CAAAAGGGCA AAGAAGTTCC TCCTTTATAT AGTACAATGA TGGAGAAGGA 421 CTCGAGGGCT GGTAGGCTTG ATTGCGTGTT CCCTTCTAAA CATGATAAGG ACTCTGTTGA 481 AGAAGTTTCA AGTTTATCAT CTGAAAATAC TAGGACATCA AATGATTGCT CCAGAAGTAA 541 CAATATAGAC TCCATTAGCG GTGAGGTCCA GCCCAATAAC CCCATTCTGG ATGACAAGAA 601 TTCTGCAGTT AGGGACAACT TGCATAGCTA TCCTCTTGGT CCCGTTTCTC AGGCAGATGA 661 TGATCTTGGT TTTCTTGATA GTAATCATGA GGATAAAAGT AG Predicted gene structure (within gDNA segment 9424 to 7513): Exon 1 8824 8123 ( 702 n); cDNA 1 702 ( 702 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E214143+ 1.000 702 1.000 C PGS_C04HBa0127E11.1-_SGN-E214143+ (8824 8123) Alignment (genomic DNA sequence = upper lines): CAAATACATT GATAGCCTTA AAAAGAGCAG AACTTTCGTA TCTCTAACGG TGGAAATAAT 8765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATACATT GATAGCCTTA AAAAGAGCAG AACTTTCGTA TCTCTAACGG TGGAAATAAT 60 CTTACCTTAA TCCAAACTAT GATGATTTCA ATTTAAAGAA ACAAATTCTG TGTTCTATTT 8705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACCTTAA TCCAAACTAT GATGATTTCA ATTTAAAGAA ACAAATTCTG TGTTCTATTT 120 TTGATTTACT CATTTTAAGG AAGCATCCTC TCTAGTTGTT TACAGCTAAA ATTCTGTAAC 8645 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTTACT CATTTTAAGG AAGCATCCTC TCTAGTTGTT TACAGCTAAA ATTCTGTAAC 180 TGATGCTATA GCTTAAAGAT GTAGCTTTGG ATGAAGTTTG CATTAGCGAT GATCATATAG 8585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCTATA GCTTAAAGAT GTAGCTTTGG ATGAAGTTTG CATTAGCGAT GATCATATAG 240 TGCCACATCC TAGTTGTGAA CATGCCAATG AAGTTTCTCT CCCAGACTGA TAGCCGTAAG 8525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCACATCC TAGTTGTGAA CATGCCAATG AAGTTTCTCT CCCAGACTGA TAGCCGTAAG 300 AAACCCCGGT GTGAAATAAT TGGTTTATTA AGAACCATAG GAGCAATCTT CTCTTAAATA 8465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCCCGGT GTGAAATAAT TGGTTTATTA AGAACCATAG GAGCAATCTT CTCTTAAATA 360 TAATAATCAG CAAAAGGGCA AAGAAGTTCC TCCTTTATAT AGTACAATGA TGGAGAAGGA 8405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAATCAG CAAAAGGGCA AAGAAGTTCC TCCTTTATAT AGTACAATGA TGGAGAAGGA 420 CTCGAGGGCT GGTAGGCTTG ATTGCGTGTT CCCTTCTAAA CATGATAAGG ACTCTGTTGA 8345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAGGGCT GGTAGGCTTG ATTGCGTGTT CCCTTCTAAA CATGATAAGG ACTCTGTTGA 480 AGAAGTTTCA AGTTTATCAT CTGAAAATAC TAGGACATCA AATGATTGCT CCAGAAGTAA 8285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTTTCA AGTTTATCAT CTGAAAATAC TAGGACATCA AATGATTGCT CCAGAAGTAA 540 CAATATAGAC TCCATTAGCG GTGAGGTCCA GCCCAATAAC CCCATTCTGG ATGACAAGAA 8225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATAGAC TCCATTAGCG GTGAGGTCCA GCCCAATAAC CCCATTCTGG ATGACAAGAA 600 TTCTGCAGTT AGGGACAACT TGCATAGCTA TCCTCTTGGT CCCGTTTCTC AGGCAGATGA 8165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGCAGTT AGGGACAACT TGCATAGCTA TCCTCTTGGT CCCGTTTCTC AGGCAGATGA 660 TGATCTTGGT TTTCTTGATA GTAATCATGA GGATAAAAGT AG 8123 |||||||||| |||||||||| |||||||||| |||||||||| || TGATCTTGGT TTTCTTGATA GTAATCATGA GGATAAAAGT AG 702 hqPGS_C04HBa0127E11.1-_SGN-E214143+ (8824 8123) ******************************************************************************** EST sequence 81 +strand 555 n (File: SGN-E317991+) 1 ACAAGTAATT TTGGAAGTTG ATTTTGATTG TTTGTAAATG AGTTCCTTCT TTGTTGTTGT 61 TTTGTTGCTG TATGAATATA AGGAGGAGTG CTTTCAGCTA ATGAATTTTT TAATTTTATT 121 TTTTGCTGTA AAAAAAAAAA GAGTAACTTT NGGAAAATGG ATGTTTACTT AAGGTGAGAA 181 GAGTTTTAAG CTTATGAACT GATTTTGCTT GTTGAAAAAT GAAAGAGAAG AAATAAATTT 241 GGAAATTGAA TTTTAGTTAA GGAGAAGATT TTCAGCTTAT GAAACGGATT TTTAGTGAAG 301 GAGAGGAATT TATTTGTCAA ATACATTGAT AGCCTTAAAA AGAGCAGAAC TTTCGTATCT 361 CTAACGGTGG AAATAATCTT ACCTTAATCC AAACTATGAT GATTTCAATT TAAAGAAACA 421 AATTCTGTGT TCTATTTTTG ATTTACTCAT TTTAAGGAAG CATCCTCTCT AGTTGTTTAC 481 AGCTAAAATT CTGTAACTGA TGCTATAGCT TAAAGATGTA GCTTTGGATG AAGTTTGCAT 541 TAGCGATGAT CATAT Predicted gene structure (within gDNA segment 9740 to 7977): Exon 1 9140 8587 ( 554 n); cDNA 1 555 ( 555 n); score: 0.994 MATCH C04HBa0127E11.1- SGN-E317991+ 0.994 554 0.998 C PGS_C04HBa0127E11.1-_SGN-E317991+ (9140 8587) Alignment (genomic DNA sequence = upper lines): ACAAGTAATT TTGGAAGTTG ATTTTGATTG TTTGTAAATG AGTTCCTTCT TTGTTGTTGT 9081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGTAATT TTGGAAGTTG ATTTTGATTG TTTGTAAATG AGTTCCTTCT TTGTTGTTGT 60 TTTGTTGCTG TATGAATATA AGGAGGAGTG CTTTCAGCTA ATGAATTTTT TAATTTTATT 9021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGCTG TATGAATATA AGGAGGAGTG CTTTCAGCTA ATGAATTTTT TAATTTTATT 120 TTTTGCTGTA AAAAAAAAAA GAGTAACTTT -GGAAAATGG ATGTTTACTT AAGGTGAGAA 8962 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTTTGCTGTA AAAAAAAAAA GAGTAACTTT NGGAAAATGG ATGTTTACTT AAGGTGAGAA 180 GAGTTTTAAG CTTATGAACT GATTTTGTTT GTTGAAAAAT GAAAGAGAAG AAATAAATTT 8902 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| GAGTTTTAAG CTTATGAACT GATTTTGCTT GTTGAAAAAT GAAAGAGAAG AAATAAATTT 240 GGAAATTGAA TTTTAGTTAA GGAGAAGATT TTCAGCTTAT GAAACGGATT TTTAGTGAAG 8842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAATTGAA TTTTAGTTAA GGAGAAGATT TTCAGCTTAT GAAACGGATT TTTAGTGAAG 300 GAGAGGAATT TATTTGTCAA ATACATTGAT AGCCTTAAAA AGAGCAGAAC TTTCGTATCT 8782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGAATT TATTTGTCAA ATACATTGAT AGCCTTAAAA AGAGCAGAAC TTTCGTATCT 360 CTAACGGTGG AAATAATCTT ACCTTAATCC AAACTATGAT GATTTCAATT TAAAGAAACA 8722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACGGTGG AAATAATCTT ACCTTAATCC AAACTATGAT GATTTCAATT TAAAGAAACA 420 AATTCTGTGT TCTATTTTTG ATTTACTCAT TTTAAGGAAG CATCCTCTCT AGTTGTTTAC 8662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCTGTGT TCTATTTTTG ATTTACTCAT TTTAAGGAAG CATCCTCTCT AGTTGTTTAC 480 AGCTAAAATT CTGTAACTGA TGCTATAGCT TAAAGATGTA GCTTTGGATG AAGTTTGCAT 8602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAAAATT CTGTAACTGA TGCTATAGCT TAAAGATGTA GCTTTGGATG AAGTTTGCAT 540 TAGCGATGAT CATAT 8587 |||||||||| ||||| TAGCGATGAT CATAT 555 hqPGS_C04HBa0127E11.1-_SGN-E317991+ (9140 8587) ******************************************************************************** EST sequence 82 +strand 540 n (File: SGN-E317878+) 1 TTGTGGAAGT TGATTTTGAT TGTTTGTAAA TGAGTTCCTT CTTTGTTGTT GTTTTGTTGC 61 TGTATGAATA TAAGGAGGAG TGCTTTCAGC TAATGAATTT TTTAATTTTA TTTTTTGCTG 121 TAAAAAAAAA AAGAGTAACT TTGGAAAATG GATGTTTACT TAAGGTGAGA AGAGTTTTAA 181 GCTTATGAAC TGATTTTGCT TGTTGAAAAA TGAAAGAGAA GAAATAAATT TGGAAATTGA 241 ATTTTAGTTA AGGAGAAGAT TTTCAGCTTA TGAAACGGAT TTTTAGTGAA GGAGAGGAAT 301 TTATTTGTCA AATACATTGA TAGCCTTAAA AAGAGCAGAA CTTTCGTATC TCTAGCGGTG 361 GAAATAATCT TACCTTAATC CAAACTATGA TGATTTCACT TTAAAGAAAC AAATTCTGTG 421 TTCTATTTTT GATTTACTCA TTTTAAGGAA GCATCCTCTC TAGTTGTTTA CAGCTAAAAT 481 TCTGTAACTG ATGCTATAGC TTAAAGATGT AGCTTTGGAT GAAGTTTGCA TTAGCGATGA Predicted gene structure (within gDNA segment 9759 to 7983): Exon 1 9132 8593 ( 540 n); cDNA 1 540 ( 540 n); score: 0.993 MATCH C04HBa0127E11.1- SGN-E317878+ 0.993 540 1.000 C PGS_C04HBa0127E11.1-_SGN-E317878+ (9132 8593) Alignment (genomic DNA sequence = upper lines): TTTTGGAAGT TGATTTTGAT TGTTTGTAAA TGAGTTCCTT CTTTGTTGTT GTTTTGTTGC 9073 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGAAGT TGATTTTGAT TGTTTGTAAA TGAGTTCCTT CTTTGTTGTT GTTTTGTTGC 60 TGTATGAATA TAAGGAGGAG TGCTTTCAGC TAATGAATTT TTTAATTTTA TTTTTTGCTG 9013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATGAATA TAAGGAGGAG TGCTTTCAGC TAATGAATTT TTTAATTTTA TTTTTTGCTG 120 TAAAAAAAAA AAGAGTAACT TTGGAAAATG GATGTTTACT TAAGGTGAGA AGAGTTTTAA 8953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAAAAAA AAGAGTAACT TTGGAAAATG GATGTTTACT TAAGGTGAGA AGAGTTTTAA 180 GCTTATGAAC TGATTTTGTT TGTTGAAAAA TGAAAGAGAA GAAATAAATT TGGAAATTGA 8893 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GCTTATGAAC TGATTTTGCT TGTTGAAAAA TGAAAGAGAA GAAATAAATT TGGAAATTGA 240 ATTTTAGTTA AGGAGAAGAT TTTCAGCTTA TGAAACGGAT TTTTAGTGAA GGAGAGGAAT 8833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAGTTA AGGAGAAGAT TTTCAGCTTA TGAAACGGAT TTTTAGTGAA GGAGAGGAAT 300 TTATTTGTCA AATACATTGA TAGCCTTAAA AAGAGCAGAA CTTTCGTATC TCTAACGGTG 8773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TTATTTGTCA AATACATTGA TAGCCTTAAA AAGAGCAGAA CTTTCGTATC TCTAGCGGTG 360 GAAATAATCT TACCTTAATC CAAACTATGA TGATTTCAAT TTAAAGAAAC AAATTCTGTG 8713 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GAAATAATCT TACCTTAATC CAAACTATGA TGATTTCACT TTAAAGAAAC AAATTCTGTG 420 TTCTATTTTT GATTTACTCA TTTTAAGGAA GCATCCTCTC TAGTTGTTTA CAGCTAAAAT 8653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTATTTTT GATTTACTCA TTTTAAGGAA GCATCCTCTC TAGTTGTTTA CAGCTAAAAT 480 TCTGTAACTG ATGCTATAGC TTAAAGATGT AGCTTTGGAT GAAGTTTGCA TTAGCGATGA 8593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTAACTG ATGCTATAGC TTAAAGATGT AGCTTTGGAT GAAGTTTGCA TTAGCGATGA 540 hqPGS_C04HBa0127E11.1-_SGN-E317878+ (9132 8593) ******************************************************************************** EST sequence 2 +strand 506 n (File: SGN-E578392+) 1 CTCAGCTTAA ACCAGTTTTT TTCGATTCGA TGTTCGATAT ATATAACGAA GTCAAATCTC 61 ATATATTATT AAAGACATAA ATATAGATAA AGGTGACAGA GTTAGTTTAT CAACCTAACA 121 TGTCTAATCC ACCTAAGTTT GGGAAATTAA AGTTATTGAC CTACTCATTT ATTAGTTTAC 181 TGGGTAAGAA ATTAAAAATA ATATATAGTC TAAATTAATT TATGAGAATT TTTGTCAGAA 241 TATTTTCTTA TTTAGGGCCC GTTTGGATGG GCTTAATAAA AACAGCTTTA AAAAAGTACT 301 TTTGAAAGTG CTGAAACTTA TTTCTAAAAT AAACAGTTAT GCATTTGGAT AAAAGTGCTG 361 AAGTTGTTAT GCCAAACGTG AAAAGCGAAA AATGGAAGAA AGAGATGTTA GGGTTATATG 421 TGTAACTTGG AAATTGTATA AAAATATTAA GGGCAAAAAG ATAAAGATGT GATCAACTTA 481 AAACAGCTTA TAAGCTAAAA AAAAAA Predicted gene structure (within gDNA segment 8181 to 15718): Exon 1 9019 9034 ( 16 n); cDNA 189 204 ( 16 n); score: 0.750 Intron 1 9035 9157 ( 123 n); Pd: 0.000 (s: 0), Pa: 0.978 (s: 0) Exon 2 9158 9179 ( 22 n); cDNA 205 226 ( 22 n); score: 0.591 Intron 2 9180 13545 (4366 n); Pd: 0.843 (s: 0), Pa: 0.894 (s: 0) Exon 3 13546 13568 ( 23 n); cDNA 227 248 ( 22 n); score: 0.609 Intron 3 13569 14304 ( 736 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 4 14305 14428 ( 124 n); cDNA 249 371 ( 123 n); score: 0.895 Intron 4 14429 14883 ( 455 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.86) Exon 5 14884 15018 ( 135 n); cDNA 372 506 ( 135 n); score: 0.867 MATCH C04HBa0127E11.1+ SGN-E578392+ 0.880 320 0.632 C PGS_C04HBa0127E11.1+_SGN-E578392+ (9019 9034,9158 9179,13546 13568,14305 14428,14884 15018) Alignment (genomic DNA sequence = upper lines): AAAATAAAAT TAAAAAATTC ATTAGCTGAA AGCACTCCTC CTTATATTCA TACAGCAACA 9078 ||| ||||| ||| | AAATTAAAAA TAATAT.... .......... .......... .......... .......... 204 AAACAACAAC AAAGAAGGAA CTCATTTACA AACAATCAAA ATCAACTTCC AAAATTACTT 9138 .......... .......... .......... .......... .......... .......... 204 GTTTTCCTTC ATTTTACAGC AAAACAAAAT CAGTTCATAA GGTGAAAACA CTCCTCCTCA 9198 | | |||| | || || | | .......... .........A TAGTCTAAAT TAATTTATGA G......... .......... 226 AATTCACAAA GCAATAAAAC TAAACCAAAA AAAAAAAAAA GTGTACATAA ATTGAGATCT 9258 .......... .......... .......... .......... .......... .......... 226 CACCACAAAA ACTCTCTGAA TCAAAACAGT ACCTCGCCGG AAAGTGATGA ATTCGCTTCG 9318 .......... .......... .......... .......... .......... .......... 226 CCGGATAATA AACAGTTGAG CTATACAACC CTAATTTGAT TGCTTTGAAA ATGAAAACCA 9378 .......... .......... .......... .......... .......... .......... 226 AAAAAACAAT AAAAATACTT TAAATTGAAT AAGTTAATGA AATTTTTTAA ATATATAGCA 9438 .......... .......... .......... .......... .......... .......... 226 GATGATGACA CGTCGATTTG TGTGGGAAAA GGGGGAGAAT CAAATTCGTG GACGAGAAAA 9498 .......... .......... .......... .......... .......... .......... 226 AACGGTTGAG ATGAGATCTG TTTCTGCAAT CTAATTGGTC CACGTATGAT GAAAACCGAC 9558 .......... .......... .......... .......... .......... .......... 226 ACGTGTCAGT TAATTTATAT GTTTATTACC GGTGGCTCAA TGTTTAGTGT TAATCCACCT 9618 .......... .......... .......... .......... .......... .......... 226 TTGGGATTGC GGAGTCCATT GAAATTTTTA TTTTGATTTG ATATTAAGTT TAAGAAAGTA 9678 .......... .......... .......... .......... .......... .......... 226 AAATGAATTT TTTAAATTTT ATTGCTTTAA GTTAAAGATC GTAATGAAAA AATAGATTAT 9738 .......... .......... .......... .......... .......... .......... 226 TTTTTTTTAA AACAAAAAAA AAAGTATGAT TAATAAATTG AAATGGAAGA AATAATATTG 9798 .......... .......... .......... .......... .......... .......... 226 TATTTTATGT TTGGTTATAC ATAGTTAATT AGTTGTAGAA TTACTTTATC TCAATATTTT 9858 .......... .......... .......... .......... .......... .......... 226 TATATAAACG AGATGAATTA TGTACTTTAT TACTCTTTAT CTCAATATTT TTATATAAAC 9918 .......... .......... .......... .......... .......... .......... 226 GAGATGAATT ATGTACTTTA TTACTTTTCA TCTAGTAAAC TAGTACAAAA AAAAATTTGG 9978 .......... .......... .......... .......... .......... .......... 226 GAAGAATTTA ATAAAATTAC TAGAAGTAGG GTAGGCCACG TAAATTGAAT TGTTGATTGT 10038 .......... .......... .......... .......... .......... .......... 226 TAAATATCAA CACTCGGGTA ATTTTCATAA TTAGAAAAAA TAATCATCAA GTATTACATT 10098 .......... .......... .......... .......... .......... .......... 226 TTTATTATCA AAAAACTTAC ACGAATCCTT TGTTTCTTGT CAATTTTAGA AAGGAAAAAT 10158 .......... .......... .......... .......... .......... .......... 226 ATTCATGAAC TATTCGAAAA TCGAAATAGG TTAACTTAAC CCTCTATCAT GTTTTCAACT 10218 .......... .......... .......... .......... .......... .......... 226 TCAAAATATC AGACCAAAGA GGTCAACGGT TCAAACCGTG AAAACAACCT CTTGCAGAGA 10278 .......... .......... .......... .......... .......... .......... 226 TTTTGTAACG CTACGCACAA TACACCCTTG TAATTCGTCA ACAGAAGTTA TAGTGCACTA 10338 .......... .......... .......... .......... .......... .......... 226 CACTGCCTTT TCTTTTCAGT CATATCACAA ATAGAACTTA AGAAACAAAT AGACAACAAT 10398 .......... .......... .......... .......... .......... .......... 226 TTTACAGTTC GAGAGGCACT GAAAACTAGC AGCATTTTGT AGTCTATCAC CACAAGATAC 10458 .......... .......... .......... .......... .......... .......... 226 AAGAAACAAG TTTTGTCTTC TCAAACGTGC TATGAATCCA CTGTACACCT GCTTGTACGT 10518 .......... .......... .......... .......... .......... .......... 226 AAACGAAAAA TATATCATCG CAACCATGAT GTTTGCACTG AGCACTGGGC AGAAAGCAAA 10578 .......... .......... .......... .......... .......... .......... 226 AAGCATTTCT CAAATACGCT GTGTTTCCAA AGGTTGAGAT TCAGTAAGTT AGAGAAATGC 10638 .......... .......... .......... .......... .......... .......... 226 AGCAAAGCCG TCAACCTCTG TCAAAGAAAA CTATCAGTAA GTTTGACAAA TGCAGCAAAG 10698 .......... .......... .......... .......... .......... .......... 226 CTGTGGACCT CTGTCAAAGA AAACTACCGC CAGGACCATC ACTCCTCTGT ATAAGAACTC 10758 .......... .......... .......... .......... .......... .......... 226 GGTCTCTTTC AATTGGCGTC AGATGTAGCT TGTGGCACCT CTTGGTATAT GCCCGATTCA 10818 .......... .......... .......... .......... .......... .......... 226 TCATTATATG AGTACCTACA TTTGATACAT CAATGAAAAA CAGTTAACAA AAGTACTATT 10878 .......... .......... .......... .......... .......... .......... 226 TGCGACAGTT CAAATCACAC TACTACAATT GGGTCCACAC AAATTGCGAG GAACCAATCG 10938 .......... .......... .......... .......... .......... .......... 226 AAAATAGGAA GATCAATATC CCGATTTTGT CCAGTTAAAA CAGTTGAGTG TCATTACCAT 10998 .......... .......... .......... .......... .......... .......... 226 TGTCCTGATG ATGCATTGCA ATACAGTCCA GATGATGGAT CATAATAGTA GCCCAAACTG 11058 .......... .......... .......... .......... .......... .......... 226 CTGCTGTAGT AATAACTGAG ACGAAAAATA CAAAAAGAGT GTAAGAAGTT TAAGACAGAA 11118 .......... .......... .......... .......... .......... .......... 226 ATACAAAAAG AAATGCCCGA CATTAATGAC TGATTTCAAC TTTGGAGGCG CAGTTCGTCA 11178 .......... .......... .......... .......... .......... .......... 226 AACAATGGAA TTGAAGTTCC TAGACAGATA GAACATATGA ACCTTTCATG TCACTCTCAA 11238 .......... .......... .......... .......... .......... .......... 226 CATCCCATAT CTGCTCTTAT CAAGTCAATG TAGAAAGATT AGACAAGCAG GAAACCCATG 11298 .......... .......... .......... .......... .......... .......... 226 GTTATTTGGT AGTCCCTGCT ACTGCTAAAC AAAGGTGGAT ATCATATCGA GCAAACAAAC 11358 .......... .......... .......... .......... .......... .......... 226 TAGCATACAT GAACTTCCAA AATCAGTATG TGGGCAGAAA CTGACAATGG AATGGCAACC 11418 .......... .......... .......... .......... .......... .......... 226 CGACAGGAAC ACTTCTGCCA ATATTAGCTT GAAAAGAATG TTGAAAGAGT ATAAATTGGA 11478 .......... .......... .......... .......... .......... .......... 226 ACGGAAAACT CCGAAAGAAC TATGTTCAAA TAAATTTCAT AGGATCCTCT TCCTTTAGAA 11538 .......... .......... .......... .......... .......... .......... 226 CTACAACATT GGGTGATTCT TTGATTGAAC AAGGAAGATC CCTACAATAA TCTGCGCTCC 11598 .......... .......... .......... .......... .......... .......... 226 CACTTGAATC CAGTGGAATT TCAAAATGAG ACGGTTTGAT TTCTTATTTA CTAGGATGTC 11658 .......... .......... .......... .......... .......... .......... 226 TGCACTCTAT GAGCAGGAGG AGAAAAGTAG TACAATGAGC TAAAAGGTAG AAAACATACC 11718 .......... .......... .......... .......... .......... .......... 226 CAGAGGACTC ATCAAAGATA TAATCACCAC TTGAATCCAG TGGAATTTCA AAATGAGACG 11778 .......... .......... .......... .......... .......... .......... 226 GTTTAATTTC TTATTTACTA GGATGTCTGC ACACTATGAG CAGAAGGAGA AAAGTAGTGC 11838 .......... .......... .......... .......... .......... .......... 226 GATGAGCTAA AAGGTAGAAA ACATACCCAG AGGACTCATC AAAGACATAA TCACCATGCT 11898 .......... .......... .......... .......... .......... .......... 226 GATCACCTAC AGTTTACATT GAGTGGGAGT CACGTATGTG GAAAGGGGAA TATGCTTAAA 11958 .......... .......... .......... .......... .......... .......... 226 AAGAAACTTT TAATCTTATC TCACATAAAA TAATGGACTA AATTTGTCAA TAATGTCAAT 12018 .......... .......... .......... .......... .......... .......... 226 TGTAGATGTG TTTAGAGATC AAATTACCTC CATTAGGGGC AGGATTAGCT GGAGTATTTT 12078 .......... .......... .......... .......... .......... .......... 226 CATCGTCTTC ACCAAACATG TCAAATGCAT CATCGCTCTT GCTAGCTGAG TTATATGAAT 12138 .......... .......... .......... .......... .......... .......... 226 TAGATGAAGC CACATCTGTC TTATGCATAG GATGTCCTTC TGCAGTAGCA GTTGACCCAC 12198 .......... .......... .......... .......... .......... .......... 226 TGGGGAGGAA ACCTTCATCG AGAATACTAT AGGGCTTAGG CTGCATTGAT TCACTGGATT 12258 .......... .......... .......... .......... .......... .......... 226 TACCCTGTCT TGCTTGAGCT AACTTCTCGT ATCCCTCTGG ATCAACACAA AATGCAAATA 12318 .......... .......... .......... .......... .......... .......... 226 AGATAATACC GTCACTCATG CAGCTCAACA GAAATGTCAG CGCATGCAAG TGAAAATTAA 12378 .......... .......... .......... .......... .......... .......... 226 TTGTTCTTTA CTTCAGAACC CTAGCATAAA ACTTAAGTCA CCAATATCAT CCTTATAGTA 12438 .......... .......... .......... .......... .......... .......... 226 GAAAAAAGGC GAAGCCAGTA ACCAGGGGAA ATACTACTTC CTGTTTTTCT GTATATTTCC 12498 .......... .......... .......... .......... .......... .......... 226 CCTCCACGGC CCCCTTCCCC CCCCCCCCCC CCCCCCCTAA AAAAAAAGAA AGTTTTAACC 12558 .......... .......... .......... .......... .......... .......... 226 AGTTTGGTTA GGGAAAAGAC AAGAATGTAA TGGGAAAGAG ACAAGACTGC CATCATATAT 12618 .......... .......... .......... .......... .......... .......... 226 TTTCCACTTC CTTGAGTTGT GGTCATGGTG GATATAATGT CAGAGAAAAG AGGGAATAAC 12678 .......... .......... .......... .......... .......... .......... 226 ACAATGATAA GTACCTGCTT CCCGCTGGAA ACTCTCTTGC TTTTCTTCAT ACACATCTGT 12738 .......... .......... .......... .......... .......... .......... 226 GAAACAAGAA ATAGACTAAA AGATTAGAAC CGTCCTTGGT ATTCTATTCA ACTATTACCT 12798 .......... .......... .......... .......... .......... .......... 226 TTCAATACAG TTATTATGCA AACACACTTA ACTGTAATCT CCATTCTCCA TTAGCTTCAT 12858 .......... .......... .......... .......... .......... .......... 226 AGCATCTTCT GTTAGCTGAT CAAACAGCTG CTTAGTTTCT CCAGACATTT TGCCCTTGTT 12918 .......... .......... .......... .......... .......... .......... 226 ATTGTTTGAG GTACCTTTCA ATCTCCTTAA ACCTCGCAAA ACCTGTTGGA AGTAAGTTCT 12978 .......... .......... .......... .......... .......... .......... 226 TCCCATGAGT CCCAAAGCAA TAGAGAACAA CATCAACTTC ATAGCACAAA GATTCTTGGC 13038 .......... .......... .......... .......... .......... .......... 226 AGAAGTATTC AAACATAACA AGTGGATAAC TTTATCGTAC AAGGCCTGCC AGGTTCATAT 13098 .......... .......... .......... .......... .......... .......... 226 GAGGCAGCTA ATACAGGAAT AAAAACTAAA TGGTCTATGG TCTAAATTAA CAATAATGTC 13158 .......... .......... .......... .......... .......... .......... 226 GAGAGAACTA GCTGCAAAGC AAATCCGCTG TGAGCAAATT GCAAATAGGC AGCACGATTT 13218 .......... .......... .......... .......... .......... .......... 226 GTTTGGTTGG AAATGAAGGG ACAAAAATCA ACCAGCTTCT CAGTTACCAT TATCAAAAAA 13278 .......... .......... .......... .......... .......... .......... 226 AAAAAAATCA ACCAGCTTCC AGAAATTATC AAAAACAAAA TGATTGATCA CAGCTCTGAT 13338 .......... .......... .......... .......... .......... .......... 226 ACCCTAAATG CTAAACATGG TAATAAAACA AAAGAGTGAT ACATACTGAA AATAAGAGAG 13398 .......... .......... .......... .......... .......... .......... 226 AAGGGTATCC TGGTGTTCTT AAACACCACA CCAGATTCAG ATATTAACCT TCCAAGCAAA 13458 .......... .......... .......... .......... .......... .......... 226 TAGGCAAAGC CTTCTCTCAA ACAAAATCTA CTACCGTCTT CCTTTAATTG AATAGCATGT 13518 .......... .......... .......... .......... .......... .......... 226 ACCCTCAAAG CAACCTATGT TTAACAGATT TTTTGTAGAG AATAGAGAGA GTGACCTGCC 13578 | | |||||| || |||| .......... .......... .......AAT TTTTGT-CAG AATATTTTCT .......... 248 AGCACCCCCA ATGGACTGGA TGCCAGATGA CACACCTCTG CCGTGCAGGC ATCAGGAACT 13638 .......... .......... .......... .......... .......... .......... 248 TTTGGGTGAA GGCCTTACAC TTGAATATCC TGATTGACAA GGATAGATGA CCAAGGGAGG 13698 .......... .......... .......... .......... .......... .......... 248 GAAGGGGAAA AGAATAAATG GTGTGGTTTA CCAGTATGCT GGTCTGATGC AAAGCATCTT 13758 .......... .......... .......... .......... .......... .......... 248 ATCATTAACT TATTCATATT TGGAGAGAGG AAAGCTGTCA GAGGAAGCAA GCAAGTAACT 13818 .......... .......... .......... .......... .......... .......... 248 GACTGAGCAA TACAGCAAAC AATATGTTAA ATTTACTTGT TATTGAATGG ATGGCTGTGT 13878 .......... .......... .......... .......... .......... .......... 248 TTAGAGGAAG TATTTGTAGT GGAAATAAGT GGAGTTGTCA AAATATCAGA TGCAAAGTTG 13938 .......... .......... .......... .......... .......... .......... 248 ATGGTGCCAA TGTCTAACTA CCATGATGAA ATTTAATGAT GAACATAGCT CCTACAGGGT 13998 .......... .......... .......... .......... .......... .......... 248 GCGCAAAATT TTCGAAAGGA TGTGCTGTTC TGACGGGTAC CAAAAGTTCT CCTTCAGAAA 14058 .......... .......... .......... .......... .......... .......... 248 AGCCAATGAG GTATTTATTA TATTGCGGTG ATTCTAAAGT TTTAACCTAC ATATTTCTGG 14118 .......... .......... .......... .......... .......... .......... 248 AATTGGCTTT AACATGCACA AGTGCACACG ACTGTTAAAT TCAAATATTA AATGCCTTGG 14178 .......... .......... .......... .......... .......... .......... 248 GAATGAGCCC CCATAAAATC CACCTAGTTC TTTTTTAACT ACTCCAATTC TAATATGATT 14238 .......... .......... .......... .......... .......... .......... 248 CAAGAAACAT GCCTTGACTC ATTCATTTGT GTTCAACCAA AATTTGACAA AAAGTTGTGA 14298 .......... .......... .......... .......... .......... .......... 248 AATAACAATG TAAGGGCCCG TTTGGATGGG CTTAATAAAA GCAGCTTTAA AAAAGTACTT 14358 || | |||||||| |||||||||| |||||||||| ||||||||| |||||||||| ......TAT- TTAGGGCCCG TTTGGATGGG CTTAATAAAA ACAGCTTTAA AAAAGTACTT 301 TTGAAAGTGC TGAAACTTAT TTTTAAAATA AGCAGTTATG CGTTTGGATA AAAGTGATGA 14418 |||||||||| |||||||||| || ||||||| | |||||||| | |||||||| |||||| ||| TTGAAAGTGC TGAAACTTAT TTCTAAAATA AACAGTTATG CATTTGGATA AAAGTGCTGA 361 AGTTAAAAAA GCTTGATGTG TTTGGCAAAT AAGTGCTGAT AAACACCTTT TTAAATCAAA 14478 |||| | AGTTGTTATG .......... .......... .......... .......... .......... 371 ATGTCTTAAA TGCTCTTAAA AGCTGTTAAC ATAATAAAAG TTAATTTATT TATATTTTAC 14538 .......... .......... .......... .......... .......... .......... 371 AGCCATAAAT AATTATATTT TGCTATCATT CACATATTTC TTTCTCATCA CAAATTATTT 14598 .......... .......... .......... .......... .......... .......... 371 ATAAGAGGAA TATAAACTTA TTATAGATTT AAAAGATATA TAATTTGAAT AGATTAAAGA 14658 .......... .......... .......... .......... .......... .......... 371 ACGATTTAAG ATTTTATTTT AGTTTCATCC ATAGGTAATA ATAATTGTCT ATCATTCACA 14718 .......... .......... .......... .......... .......... .......... 371 TATTTCTTTA TTATCACAAA TTATTTATAA GAGGAATATA ATTTTTTATT TAAGTTATAT 14778 .......... .......... .......... .......... .......... .......... 371 GTGCAACTTA TTTTACATTT AAATAATATA TAATTTGAAT AGATCACTTG AAAGATTTAA 14838 .......... .......... .......... .......... .......... .......... 371 GATTTATTTT ATTTTCATTC ATTAGTAATA GTAATTGTCT ATCATCCACA CGTGAAAAGG 14898 ||| | ||||||||| .......... .......... .......... .......... .....CCAAA CGTGAAAAGC 386 AAAAAATAGA AGAAAGAGAT GTTAGGATTA TGTGGGTAAT TTGAAGATTG TATAAAAATA 14958 |||||| || |||||||||| |||||| ||| | || |||| ||| | |||| |||||||||| GAAAAATGGA AGAAAGAGAT GTTAGGGTTA TATGTGTAAC TTGGAAATTG TATAAAAATA 446 TTAAGGGCAA ACAGGTAAAA ATGTGGTCAA CTTAAAACAG CTTATAAGCT GGGGAAAAAA 15018 |||||||||| | || |||| ||||| |||| |||||||||| |||||||||| |||||| TTAAGGGCAA AAAGATAAAG ATGTGATCAA CTTAAAACAG CTTATAAGCT AAAAAAAAAA 506 hqPGS_C04HBa0127E11.1+_SGN-E578392+ (14305 14428,14884 15018) ******************************************************************************** EST sequence 85 -strand 540 n (File: SGN-E253695-) 1 TTTTAAAATA AGCAATTATG CGTTTGGATA AAAGTGTTGA AGTTGTTATG CCAAACGTGA 61 AAAGGGAAAA ATAGAAGAAA GAGAAGTTAG TGTTATATGG GTAATTTGGA GATTGTATAA 121 AAATATTAAG GGAAAAAACA TAAAAATATG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 181 AAAAAAGCAC ACTTTTGGCT TAAAATAAGT TTTTTTAACT TAAAATAAGC TATTTTGAGT 241 ATTGCCAAAC ATTTAAATAA GTCAAAAACC AGCTTTTAAG TCAGTTTGAC CAGCTTTTAA 301 GCTGAGCCAA ACAGGCTCTA AAGCTCGAGA TAGTGAAACT CTAAGATGAT CAATTAAGGA 361 ACTGGTGTTG GTTGTTTTTA GTAGATCTCT TACTTGTTCA AATGCAGGCA TGAGGAAGAG 421 GAGTCCAGTT TGAAAGTAGT CAATTTGAAG CTCAAGAATG TCCCATGGTG TCAACTCAAT 481 AATCTTACAA TTATCTGTAT GGTGCTGACT TTTTCCCTCA GCTTTAACCG TCCATTTTGA Predicted gene structure (within gDNA segment 13243 to 17953): Exon 1 14379 14428 ( 50 n); cDNA 1 50 ( 50 n); score: 0.860 Intron 1 14429 14883 ( 455 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.88) Exon 2 14884 15173 ( 290 n); cDNA 51 322 ( 272 n); score: 0.866 Intron 2 15174 15988 ( 815 n); Pd: 0.000 (s: 1.00), Pa: 0.979 (s: 0) Exon 3 15989 15996 ( 8 n); cDNA 323 330 ( 8 n); score: 0.875 MATCH C04HBa0127E11.1+ SGN-E253695- 0.865 348 0.644 C PGS_C04HBa0127E11.1+_SGN-E253695- (14379 14428,14884 15173,15989 15996) Alignment (genomic DNA sequence = upper lines): TTTTAAAATA AGCAGTTATG CGTTTGGATA AAAGTGATGA AGTTAAAAAA GCTTGATGTG 14438 |||||||||| |||| ||||| |||||||||| |||||| ||| |||| | TTTTAAAATA AGCAATTATG CGTTTGGATA AAAGTGTTGA AGTTGTTATG .......... 50 TTTGGCAAAT AAGTGCTGAT AAACACCTTT TTAAATCAAA ATGTCTTAAA TGCTCTTAAA 14498 .......... .......... .......... .......... .......... .......... 50 AGCTGTTAAC ATAATAAAAG TTAATTTATT TATATTTTAC AGCCATAAAT AATTATATTT 14558 .......... .......... .......... .......... .......... .......... 50 TGCTATCATT CACATATTTC TTTCTCATCA CAAATTATTT ATAAGAGGAA TATAAACTTA 14618 .......... .......... .......... .......... .......... .......... 50 TTATAGATTT AAAAGATATA TAATTTGAAT AGATTAAAGA ACGATTTAAG ATTTTATTTT 14678 .......... .......... .......... .......... .......... .......... 50 AGTTTCATCC ATAGGTAATA ATAATTGTCT ATCATTCACA TATTTCTTTA TTATCACAAA 14738 .......... .......... .......... .......... .......... .......... 50 TTATTTATAA GAGGAATATA ATTTTTTATT TAAGTTATAT GTGCAACTTA TTTTACATTT 14798 .......... .......... .......... .......... .......... .......... 50 AAATAATATA TAATTTGAAT AGATCACTTG AAAGATTTAA GATTTATTTT ATTTTCATTC 14858 .......... .......... .......... .......... .......... .......... 50 ATTAGTAATA GTAATTGTCT ATCATCCACA CGTGAAAAGG AAAAAATAGA AGAAAGAGAT 14918 ||| | |||||||||| ||||||||| ||||||||| .......... .......... .....CCAAA CGTGAAAAGG GAAAAATAGA AGAAAGAGAA 85 GTTAGGATTA TGTGGGTAAT TTGAAGATTG TATAAAAATA TTAAGGGCAA ACAGGTAAAA 14978 ||||| ||| | |||||||| ||| |||||| |||||||||| ||||||| || | | ||||| GTTAGTGTTA TATGGGTAAT TTGGAGATTG TATAAAAATA TTAAGGGAAA AAACATAAAA 145 ATGTGGTCAA CTTAAAACAG CTTATAAGCT GGGGAAAAAA AGCACCCCTA CCCCAGCTTT 15038 || ||||||| |||||||||| |||||||||| |||||| | | | ||| ATATGGTCAA CTTAAAACAG CTTATAAGCT ----AAAAAA A--A-----A ---AAGC--- 188 TAACTTTTGA CTTAAAATAA GTTTTTTTTA ACTTAAAATA AGTTGTTTTG AGTATTGTCA 15098 ||||||| |||||||||| | |||||||| |||||||||| || | ||||| ||||||| || ACACTTTTGG CTTAAAATAA G-TTTTTTTA ACTTAAAATA AGCTATTTTG AGTATTGCCA 247 AACAGCTAAA TAAGTCAAAA ACCAGCTTTT AAGTCAGTTT GACCAGCTTT TAAGCTGAGC 15158 |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATTTAAA TAAGTCAAAA ACCAGCTTTT AAGTCAGTTT GACCAGCTTT TAAGCTGAGC 307 CAAACAGGCT CTAAATCTTA ACAGCTCAAC CATAGCCTCT CCATTTCTCA TTTGAAAACA 15218 |||||||||| ||||| CAAACAGGCT CTAAA..... .......... .......... .......... .......... 322 ACAGCAAAAA GCCACAAAGA ACTTTGCTTG GACAATGAAG AAAATATAAT ATGCAAGCAA 15278 .......... .......... .......... .......... .......... .......... 322 CAGCAAACAC AGTATCAATA TGCAACCATT AGTACGAGAT AATACATGAG GGAAAAGCAG 15338 .......... .......... .......... .......... .......... .......... 322 ATAAGATTCA TGTTGAAACC ACCACTGAAG GAACCAGAAA TGAGAGCACA TAAAATATTT 15398 .......... .......... .......... .......... .......... .......... 322 AGAAGATATT AAAAAAAATC TACAAGCAAA TGCCATCAAC AGTATTTATC CATTAAAAAA 15458 .......... .......... .......... .......... .......... .......... 322 AATTAACAAA AAAAAACTAG AAAACACGAG GTGGGAATAG TTACTGTTTC TCCTGGTTCG 15518 .......... .......... .......... .......... .......... .......... 322 AGCACATCAG CAATTCGCCT CTTCATCTTT CCTAGTTGTT CTGATGTAAG GTCTTGAATC 15578 .......... .......... .......... .......... .......... .......... 322 TCATCTTCAT TTGATATCTT GATAGCTTTC TTCCCAGAAT ATGTTTTCTC AGTATCAACA 15638 .......... .......... .......... .......... .......... .......... 322 CTATCAAGCC ATGCATCCTG TACACTTACT AAGATCAGGA AAAGATGCAA GGAATGGGGC 15698 .......... .......... .......... .......... .......... .......... 322 CTGGGGTAGA AAATGTTTGA TGTAAGACTA GCACCTTTAT CTCATTTTCA TTTAAATATT 15758 .......... .......... .......... .......... .......... .......... 322 CAACATAGTT TCCTGATGCA TCAAAATAAC CTTCTTCTCT CTCTTTATTC AGATTAAAAG 15818 .......... .......... .......... .......... .......... .......... 322 GTTCTATTGC AATCCCATCA TCAATGAATG TTTCATTTTC CTGCAACCAG AGATATTCCA 15878 .......... .......... .......... .......... .......... .......... 322 TTAGTTACAC CAGAAAGGAA TACAAGAAAT ACAAAGTTTA GCCATAGAGC AATTAGAATA 15938 .......... .......... .......... .......... .......... .......... 322 TGCAAAATTT GACATTAATG ATAATTCCAA GTACTTCAGT TTGTTTATAG GCTGGAGA 15996 ||| |||| .......... .......... .......... .......... .......... GCTCGAGA 330 hqPGS_C04HBa0127E11.1+_SGN-E253695- (14379 14428,14884 15173) ******************************************************************************** EST sequence 8 +strand 580 n (File: SGN-E204223+) 1 ATGGTCTTCT TTGGTTAGGA GGGCCAATAA AAATTGAAAT GAAAACAGGA AGGAAAGATA 61 GCAAGGAAAC TTACTTTTCA GAAGTTGAGA AGTACCTCCC TAATCACAAC GATTCAATCT 121 CATCTGTGCT TTCAAGATTT CAATCAATTG GTGTTGATAC TGAAGGAACT GTTGCTCTAC 181 TTGGTAATCA ACTCTCTAAA CTCTCGTTTA ATCATAAATT TTTTAAAAAT AATTAATTAT 241 ACAAAATTAT GTTTATTTTG ATCGAAAAAT TCATGTAGAG TTCATTCTTA GGGCCCGTTT 301 GGATGGACTT AGCTTTAAAA AAGTACTTTT AAAAGTTATG CATTTGGATA AAAGTGTTGA 361 AGTTGCTATG CCAAACGTGA AAATGGAAAA ATGGAAGAAA GAGATGTTAG AGTTATGTGG 421 ATAATTTGGA GATTGTATAA AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA 481 AACAGCTTAT AAGCTAAAAA AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAAAA 541 TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA Predicted gene structure (within gDNA segment 7974 to 15792): Exon 1 9166 9179 ( 14 n); cDNA 231 243 ( 13 n); score: 0.643 Intron 1 9180 9436 ( 257 n); Pd: 0.843 (s: 0), Pa: 0.991 (s: 0) Exon 2 9437 9442 ( 6 n); cDNA 244 248 ( 5 n); score: 0.500 Intron 2 9443 12023 (2581 n); Pd: 0.000 (s: 0), Pa: 0.994 (s: 0) Exon 3 12024 12042 ( 19 n); cDNA 249 267 ( 19 n); score: 0.632 Intron 3 12043 13545 (1503 n); Pd: 0.000 (s: 0), Pa: 0.894 (s: 0) Exon 4 13546 13559 ( 14 n); cDNA 268 281 ( 14 n); score: 0.714 Intron 4 13560 14302 ( 743 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.58) Exon 5 14303 14352 ( 50 n); cDNA 282 332 ( 51 n); score: 0.590 Intron 5 14353 14390 ( 38 n); Pd: 0.408 (s: 0.60), Pa: 0.000 (s: 0) Exon 6 14391 14428 ( 38 n); cDNA 333 370 ( 38 n); score: 0.789 Intron 6 14429 14883 ( 455 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 7 14884 15092 ( 209 n); cDNA 371 580 ( 210 n); score: 0.888 MATCH C04HBa0127E11.1+ SGN-E204223+ 0.830 350 0.603 C PGS_C04HBa0127E11.1+_SGN-E204223+ (9166 9179,9437 9442,12024 12042,13546 13559,14303 14352,14391 14428,14884 15092) Alignment (genomic DNA sequence = upper lines): AATCAGTTCA TAAGGTGAAA ACACTCCTCC TCAAATTCAC AAAGCAATAA AACTAAACCA 9225 ||| | || | || AATTAATT-A TACA...... .......... .......... .......... .......... 243 AAAAAAAAAA AAAGTGTACA TAAATTGAGA TCTCACCACA AAAACTCTCT GAATCAAAAC 9285 .......... .......... .......... .......... .......... .......... 243 AGTACCTCGC CGGAAAGTGA TGAATTCGCT TCGCCGGATA ATAAACAGTT GAGCTATACA 9345 .......... .......... .......... .......... .......... .......... 243 ACCCTAATTT GATTGCTTTG AAAATGAAAA CCAAAAAAAC AATAAAAATA CTTTAAATTG 9405 .......... .......... .......... .......... .......... .......... 243 AATAAGTTAA TGAAATTTTT TAAATATATA GCAGATGATG ACACGTCGAT TTGTGTGGGA 9465 | || .......... .......... .......... .-AAATT... .......... .......... 248 AAAGGGGGAG AATCAAATTC GTGGACGAGA AAAAACGGTT GAGATGAGAT CTGTTTCTGC 9525 .......... .......... .......... .......... .......... .......... 248 AATCTAATTG GTCCACGTAT GATGAAAACC GACACGTGTC AGTTAATTTA TATGTTTATT 9585 .......... .......... .......... .......... .......... .......... 248 ACCGGTGGCT CAATGTTTAG TGTTAATCCA CCTTTGGGAT TGCGGAGTCC ATTGAAATTT 9645 .......... .......... .......... .......... .......... .......... 248 TTATTTTGAT TTGATATTAA GTTTAAGAAA GTAAAATGAA TTTTTTAAAT TTTATTGCTT 9705 .......... .......... .......... .......... .......... .......... 248 TAAGTTAAAG ATCGTAATGA AAAAATAGAT TATTTTTTTT TAAAACAAAA AAAAAAGTAT 9765 .......... .......... .......... .......... .......... .......... 248 GATTAATAAA TTGAAATGGA AGAAATAATA TTGTATTTTA TGTTTGGTTA TACATAGTTA 9825 .......... .......... .......... .......... .......... .......... 248 ATTAGTTGTA GAATTACTTT ATCTCAATAT TTTTATATAA ACGAGATGAA TTATGTACTT 9885 .......... .......... .......... .......... .......... .......... 248 TATTACTCTT TATCTCAATA TTTTTATATA AACGAGATGA ATTATGTACT TTATTACTTT 9945 .......... .......... .......... .......... .......... .......... 248 TCATCTAGTA AACTAGTACA AAAAAAAATT TGGGAAGAAT TTAATAAAAT TACTAGAAGT 10005 .......... .......... .......... .......... .......... .......... 248 AGGGTAGGCC ACGTAAATTG AATTGTTGAT TGTTAAATAT CAACACTCGG GTAATTTTCA 10065 .......... .......... .......... .......... .......... .......... 248 TAATTAGAAA AAATAATCAT CAAGTATTAC ATTTTTATTA TCAAAAAACT TACACGAATC 10125 .......... .......... .......... .......... .......... .......... 248 CTTTGTTTCT TGTCAATTTT AGAAAGGAAA AATATTCATG AACTATTCGA AAATCGAAAT 10185 .......... .......... .......... .......... .......... .......... 248 AGGTTAACTT AACCCTCTAT CATGTTTTCA ACTTCAAAAT ATCAGACCAA AGAGGTCAAC 10245 .......... .......... .......... .......... .......... .......... 248 GGTTCAAACC GTGAAAACAA CCTCTTGCAG AGATTTTGTA ACGCTACGCA CAATACACCC 10305 .......... .......... .......... .......... .......... .......... 248 TTGTAATTCG TCAACAGAAG TTATAGTGCA CTACACTGCC TTTTCTTTTC AGTCATATCA 10365 .......... .......... .......... .......... .......... .......... 248 CAAATAGAAC TTAAGAAACA AATAGACAAC AATTTTACAG TTCGAGAGGC ACTGAAAACT 10425 .......... .......... .......... .......... .......... .......... 248 AGCAGCATTT TGTAGTCTAT CACCACAAGA TACAAGAAAC AAGTTTTGTC TTCTCAAACG 10485 .......... .......... .......... .......... .......... .......... 248 TGCTATGAAT CCACTGTACA CCTGCTTGTA CGTAAACGAA AAATATATCA TCGCAACCAT 10545 .......... .......... .......... .......... .......... .......... 248 GATGTTTGCA CTGAGCACTG GGCAGAAAGC AAAAAGCATT TCTCAAATAC GCTGTGTTTC 10605 .......... .......... .......... .......... .......... .......... 248 CAAAGGTTGA GATTCAGTAA GTTAGAGAAA TGCAGCAAAG CCGTCAACCT CTGTCAAAGA 10665 .......... .......... .......... .......... .......... .......... 248 AAACTATCAG TAAGTTTGAC AAATGCAGCA AAGCTGTGGA CCTCTGTCAA AGAAAACTAC 10725 .......... .......... .......... .......... .......... .......... 248 CGCCAGGACC ATCACTCCTC TGTATAAGAA CTCGGTCTCT TTCAATTGGC GTCAGATGTA 10785 .......... .......... .......... .......... .......... .......... 248 GCTTGTGGCA CCTCTTGGTA TATGCCCGAT TCATCATTAT ATGAGTACCT ACATTTGATA 10845 .......... .......... .......... .......... .......... .......... 248 CATCAATGAA AAACAGTTAA CAAAAGTACT ATTTGCGACA GTTCAAATCA CACTACTACA 10905 .......... .......... .......... .......... .......... .......... 248 ATTGGGTCCA CACAAATTGC GAGGAACCAA TCGAAAATAG GAAGATCAAT ATCCCGATTT 10965 .......... .......... .......... .......... .......... .......... 248 TGTCCAGTTA AAACAGTTGA GTGTCATTAC CATTGTCCTG ATGATGCATT GCAATACAGT 11025 .......... .......... .......... .......... .......... .......... 248 CCAGATGATG GATCATAATA GTAGCCCAAA CTGCTGCTGT AGTAATAACT GAGACGAAAA 11085 .......... .......... .......... .......... .......... .......... 248 ATACAAAAAG AGTGTAAGAA GTTTAAGACA GAAATACAAA AAGAAATGCC CGACATTAAT 11145 .......... .......... .......... .......... .......... .......... 248 GACTGATTTC AACTTTGGAG GCGCAGTTCG TCAAACAATG GAATTGAAGT TCCTAGACAG 11205 .......... .......... .......... .......... .......... .......... 248 ATAGAACATA TGAACCTTTC ATGTCACTCT CAACATCCCA TATCTGCTCT TATCAAGTCA 11265 .......... .......... .......... .......... .......... .......... 248 ATGTAGAAAG ATTAGACAAG CAGGAAACCC ATGGTTATTT GGTAGTCCCT GCTACTGCTA 11325 .......... .......... .......... .......... .......... .......... 248 AACAAAGGTG GATATCATAT CGAGCAAACA AACTAGCATA CATGAACTTC CAAAATCAGT 11385 .......... .......... .......... .......... .......... .......... 248 ATGTGGGCAG AAACTGACAA TGGAATGGCA ACCCGACAGG AACACTTCTG CCAATATTAG 11445 .......... .......... .......... .......... .......... .......... 248 CTTGAAAAGA ATGTTGAAAG AGTATAAATT GGAACGGAAA ACTCCGAAAG AACTATGTTC 11505 .......... .......... .......... .......... .......... .......... 248 AAATAAATTT CATAGGATCC TCTTCCTTTA GAACTACAAC ATTGGGTGAT TCTTTGATTG 11565 .......... .......... .......... .......... .......... .......... 248 AACAAGGAAG ATCCCTACAA TAATCTGCGC TCCCACTTGA ATCCAGTGGA ATTTCAAAAT 11625 .......... .......... .......... .......... .......... .......... 248 GAGACGGTTT GATTTCTTAT TTACTAGGAT GTCTGCACTC TATGAGCAGG AGGAGAAAAG 11685 .......... .......... .......... .......... .......... .......... 248 TAGTACAATG AGCTAAAAGG TAGAAAACAT ACCCAGAGGA CTCATCAAAG ATATAATCAC 11745 .......... .......... .......... .......... .......... .......... 248 CACTTGAATC CAGTGGAATT TCAAAATGAG ACGGTTTAAT TTCTTATTTA CTAGGATGTC 11805 .......... .......... .......... .......... .......... .......... 248 TGCACACTAT GAGCAGAAGG AGAAAAGTAG TGCGATGAGC TAAAAGGTAG AAAACATACC 11865 .......... .......... .......... .......... .......... .......... 248 CAGAGGACTC ATCAAAGACA TAATCACCAT GCTGATCACC TACAGTTTAC ATTGAGTGGG 11925 .......... .......... .......... .......... .......... .......... 248 AGTCACGTAT GTGGAAAGGG GAATATGCTT AAAAAGAAAC TTTTAATCTT ATCTCACATA 11985 .......... .......... .......... .......... .......... .......... 248 AAATAATGGA CTAAATTTGT CAATAATGTC AATTGTAGAT GTGTTTAGAG ATCAAATTAC 12045 || || | | | ||| || .......... .......... .......... ........AT GTTTATTTTG ATCGAAA... 267 CTCCATTAGG GGCAGGATTA GCTGGAGTAT TTTCATCGTC TTCACCAAAC ATGTCAAATG 12105 .......... .......... .......... .......... .......... .......... 267 CATCATCGCT CTTGCTAGCT GAGTTATATG AATTAGATGA AGCCACATCT GTCTTATGCA 12165 .......... .......... .......... .......... .......... .......... 267 TAGGATGTCC TTCTGCAGTA GCAGTTGACC CACTGGGGAG GAAACCTTCA TCGAGAATAC 12225 .......... .......... .......... .......... .......... .......... 267 TATAGGGCTT AGGCTGCATT GATTCACTGG ATTTACCCTG TCTTGCTTGA GCTAACTTCT 12285 .......... .......... .......... .......... .......... .......... 267 CGTATCCCTC TGGATCAACA CAAAATGCAA ATAAGATAAT ACCGTCACTC ATGCAGCTCA 12345 .......... .......... .......... .......... .......... .......... 267 ACAGAAATGT CAGCGCATGC AAGTGAAAAT TAATTGTTCT TTACTTCAGA ACCCTAGCAT 12405 .......... .......... .......... .......... .......... .......... 267 AAAACTTAAG TCACCAATAT CATCCTTATA GTAGAAAAAA GGCGAAGCCA GTAACCAGGG 12465 .......... .......... .......... .......... .......... .......... 267 GAAATACTAC TTCCTGTTTT TCTGTATATT TCCCCTCCAC GGCCCCCTTC CCCCCCCCCC 12525 .......... .......... .......... .......... .......... .......... 267 CCCCCCCCCC TAAAAAAAAA GAAAGTTTTA ACCAGTTTGG TTAGGGAAAA GACAAGAATG 12585 .......... .......... .......... .......... .......... .......... 267 TAATGGGAAA GAGACAAGAC TGCCATCATA TATTTTCCAC TTCCTTGAGT TGTGGTCATG 12645 .......... .......... .......... .......... .......... .......... 267 GTGGATATAA TGTCAGAGAA AAGAGGGAAT AACACAATGA TAAGTACCTG CTTCCCGCTG 12705 .......... .......... .......... .......... .......... .......... 267 GAAACTCTCT TGCTTTTCTT CATACACATC TGTGAAACAA GAAATAGACT AAAAGATTAG 12765 .......... .......... .......... .......... .......... .......... 267 AACCGTCCTT GGTATTCTAT TCAACTATTA CCTTTCAATA CAGTTATTAT GCAAACACAC 12825 .......... .......... .......... .......... .......... .......... 267 TTAACTGTAA TCTCCATTCT CCATTAGCTT CATAGCATCT TCTGTTAGCT GATCAAACAG 12885 .......... .......... .......... .......... .......... .......... 267 CTGCTTAGTT TCTCCAGACA TTTTGCCCTT GTTATTGTTT GAGGTACCTT TCAATCTCCT 12945 .......... .......... .......... .......... .......... .......... 267 TAAACCTCGC AAAACCTGTT GGAAGTAAGT TCTTCCCATG AGTCCCAAAG CAATAGAGAA 13005 .......... .......... .......... .......... .......... .......... 267 CAACATCAAC TTCATAGCAC AAAGATTCTT GGCAGAAGTA TTCAAACATA ACAAGTGGAT 13065 .......... .......... .......... .......... .......... .......... 267 AACTTTATCG TACAAGGCCT GCCAGGTTCA TATGAGGCAG CTAATACAGG AATAAAAACT 13125 .......... .......... .......... .......... .......... .......... 267 AAATGGTCTA TGGTCTAAAT TAACAATAAT GTCGAGAGAA CTAGCTGCAA AGCAAATCCG 13185 .......... .......... .......... .......... .......... .......... 267 CTGTGAGCAA ATTGCAAATA GGCAGCACGA TTTGTTTGGT TGGAAATGAA GGGACAAAAA 13245 .......... .......... .......... .......... .......... .......... 267 TCAACCAGCT TCTCAGTTAC CATTATCAAA AAAAAAAAAA TCAACCAGCT TCCAGAAATT 13305 .......... .......... .......... .......... .......... .......... 267 ATCAAAAACA AAATGATTGA TCACAGCTCT GATACCCTAA ATGCTAAACA TGGTAATAAA 13365 .......... .......... .......... .......... .......... .......... 267 ACAAAAGAGT GATACATACT GAAAATAAGA GAGAAGGGTA TCCTGGTGTT CTTAAACACC 13425 .......... .......... .......... .......... .......... .......... 267 ACACCAGATT CAGATATTAA CCTTCCAAGC AAATAGGCAA AGCCTTCTCT CAAACAAAAT 13485 .......... .......... .......... .......... .......... .......... 267 CTACTACCGT CTTCCTTTAA TTGAATAGCA TGTACCCTCA AAGCAACCTA TGTTTAACAG 13545 .......... .......... .......... .......... .......... .......... 267 ATTTTTTGTA GAGAATAGAG AGAGTGACCT GCCAGCACCC CCAATGGACT GGATGCCAGA 13605 | || |||| ||| AATTCATGTA GAGT...... .......... .......... .......... .......... 281 TGACACACCT CTGCCGTGCA GGCATCAGGA ACTTTTGGGT GAAGGCCTTA CACTTGAATA 13665 .......... .......... .......... .......... .......... .......... 281 TCCTGATTGA CAAGGATAGA TGACCAAGGG AGGGAAGGGG AAAAGAATAA ATGGTGTGGT 13725 .......... .......... .......... .......... .......... .......... 281 TTACCAGTAT GCTGGTCTGA TGCAAAGCAT CTTATCATTA ACTTATTCAT ATTTGGAGAG 13785 .......... .......... .......... .......... .......... .......... 281 AGGAAAGCTG TCAGAGGAAG CAAGCAAGTA ACTGACTGAG CAATACAGCA AACAATATGT 13845 .......... .......... .......... .......... .......... .......... 281 TAAATTTACT TGTTATTGAA TGGATGGCTG TGTTTAGAGG AAGTATTTGT AGTGGAAATA 13905 .......... .......... .......... .......... .......... .......... 281 AGTGGAGTTG TCAAAATATC AGATGCAAAG TTGATGGTGC CAATGTCTAA CTACCATGAT 13965 .......... .......... .......... .......... .......... .......... 281 GAAATTTAAT GATGAACATA GCTCCTACAG GGTGCGCAAA ATTTTCGAAA GGATGTGCTG 14025 .......... .......... .......... .......... .......... .......... 281 TTCTGACGGG TACCAAAAGT TCTCCTTCAG AAAAGCCAAT GAGGTATTTA TTATATTGCG 14085 .......... .......... .......... .......... .......... .......... 281 GTGATTCTAA AGTTTTAACC TACATATTTC TGGAATTGGC TTTAACATGC ACAAGTGCAC 14145 .......... .......... .......... .......... .......... .......... 281 ACGACTGTTA AATTCAAATA TTAAATGCCT TGGGAATGAG CCCCCATAAA ATCCACCTAG 14205 .......... .......... .......... .......... .......... .......... 281 TTCTTTTTTA ACTACTCCAA TTCTAATATG ATTCAAGAAA CATGCCTTGA CTCATTCATT 14265 .......... .......... .......... .......... .......... .......... 281 TGTGTTCAAC CAAAATTTGA CAAAAAGTTG TGAAATAACA ATGTAAGGGC CCGTTTGGAT 14325 || | | ||||| |||||||||| .......... .......... .......... .......TCA TTCTTAGGGC CCGTTTGGAT 304 GGGCTTA-AT AAAAGCAGCT TTAAAAAAGT ACTTTTGAAA GTGCTGAAAC TTATTTTTAA 14384 || |||| | || | | || GGACTTAGCT TTAAAAAAGT ACTTTTAA.. .......... .......... .......... 332 AATAAGCAGT TATGCGTTTG GATAAAAGTG ATGAAGTTAA AAAAGCTTGA TGTGTTTGGC 14444 ||| ||||| |||| |||||||||| ||||||| | ......AAGT TATGCATTTG GATAAAAGTG TTGAAGTTGC TATG...... .......... 370 AAATAAGTGC TGATAAACAC CTTTTTAAAT CAAAATGTCT TAAATGCTCT TAAAAGCTGT 14504 .......... .......... .......... .......... .......... .......... 370 TAACATAATA AAAGTTAATT TATTTATATT TTACAGCCAT AAATAATTAT ATTTTGCTAT 14564 .......... .......... .......... .......... .......... .......... 370 CATTCACATA TTTCTTTCTC ATCACAAATT ATTTATAAGA GGAATATAAA CTTATTATAG 14624 .......... .......... .......... .......... .......... .......... 370 ATTTAAAAGA TATATAATTT GAATAGATTA AAGAACGATT TAAGATTTTA TTTTAGTTTC 14684 .......... .......... .......... .......... .......... .......... 370 ATCCATAGGT AATAATAATT GTCTATCATT CACATATTTC TTTATTATCA CAAATTATTT 14744 .......... .......... .......... .......... .......... .......... 370 ATAAGAGGAA TATAATTTTT TATTTAAGTT ATATGTGCAA CTTATTTTAC ATTTAAATAA 14804 .......... .......... .......... .......... .......... .......... 370 TATATAATTT GAATAGATCA CTTGAAAGAT TTAAGATTTA TTTTATTTTC ATTCATTAGT 14864 .......... .......... .......... .......... .......... .......... 370 AATAGTAATT GTCTATCATC CACACGTGAA AAGGAAAAAA TAGAAGAAAG AGATGTTAGG 14924 | || ||||||| || | ||||| | |||||||| ||||||||| .......... .........C CAAACGTGAA AATGGAAAAA TGGAAGAAAG AGATGTTAGA 411 ATTATGTGGG TAATTTGAAG ATTGTATAAA AATATTAAGG GCAAACAGGT AAAAATGTGG 14984 |||||||| ||||||| || |||||||||| |||||||||| ||||| || | |||||||||| GTTATGTGGA TAATTTGGAG ATTGTATAAA AATATTAAGG GCAAAAAGAT AAAAATGTGG 471 TCAACTTAAA ACAGCTTATA AGCTGGGGAA AAAAAGCACC CCTACCCCAG CTTTTAACTT 15044 |||||||||| |||||||||| |||| || |||||||||| |||||||||| |||||||||| TCAACTTAAA ACAGCTTATA AGCT--AAAA AAAAAGCACC CCTACCCCAG CTTTTAACTT 529 TTGACTTAAA ATAAG---TT TTTTTTAACT TAAAATAAGT TGTTTTGAGT A 15092 ||| |||||| ||||| || |||||||||| |||||||||| | |||||||| | TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT A 580 hqPGS_C04HBa0127E11.1+_SGN-E204223+ (14391 14428,14884 15092) ******************************************************************************** EST sequence 17 +strand 554 n (File: SGN-E374844+) 1 ATGGTCTTCT TTGGTTAGGA GGGCCAATAA AAATTGAAAT GAAAACAGGA AGGAAAGATA 61 GCAAGGAAAC TTACTTTTCA GAAGTTGAGA AGTACCTCCC TAATCACAAC GATTCAATCT 121 CATCTGTGCT TTCAAGATTT CAATCAATTG GTGTTGATAC TGAAGGAACT GTTGCTCTAC 181 TTGGTAATCA ACTCTCTAAA CTCTCGTTTA ATCATAAATT TTTTAAAAAT AATTAATTAT 241 ACAAAATTAT GTTTATTTTG ATCGAAAAAT TCATGTAGAG TTCATTCTTA GGGCCCGTTT 301 GGATGGACTT AGCTTTAAAA AAGTACTTTT AAAAGTTATG CATTTGGATA AAAGTGTTGA 361 AGTTGCTATG CCAAACGTGA AAATGGAAAA ATGGAAGAAA GAGATGTTAG AGTTATGTGG 421 ATAATTTGGA GATTGTATAA AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA 481 AACAGCTTAT AAGCTAAAAA AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAATA 541 TAAGTTTTTT TTTT Predicted gene structure (within gDNA segment 7974 to 15877): Exon 1 9166 9179 ( 14 n); cDNA 231 243 ( 13 n); score: 0.643 Intron 1 9180 9436 ( 257 n); Pd: 0.843 (s: 0), Pa: 0.991 (s: 0) Exon 2 9437 9442 ( 6 n); cDNA 244 248 ( 5 n); score: 0.500 Intron 2 9443 12023 (2581 n); Pd: 0.000 (s: 0), Pa: 0.994 (s: 0) Exon 3 12024 12042 ( 19 n); cDNA 249 267 ( 19 n); score: 0.632 Intron 3 12043 13545 (1503 n); Pd: 0.000 (s: 0), Pa: 0.894 (s: 0) Exon 4 13546 13559 ( 14 n); cDNA 268 281 ( 14 n); score: 0.714 Intron 4 13560 14302 ( 743 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.58) Exon 5 14303 14352 ( 50 n); cDNA 282 332 ( 51 n); score: 0.590 Intron 5 14353 14390 ( 38 n); Pd: 0.408 (s: 0.60), Pa: 0.000 (s: 0) Exon 6 14391 14428 ( 38 n); cDNA 333 370 ( 38 n); score: 0.789 Intron 6 14429 14883 ( 455 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 7 14884 15067 ( 184 n); cDNA 371 552 ( 182 n); score: 0.913 MATCH C04HBa0127E11.1+ SGN-E374844+ 0.844 325 0.587 C PGS_C04HBa0127E11.1+_SGN-E374844+ (9166 9179,9437 9442,12024 12042,13546 13559,14303 14352,14391 14428,14884 15067) Alignment (genomic DNA sequence = upper lines): AATCAGTTCA TAAGGTGAAA ACACTCCTCC TCAAATTCAC AAAGCAATAA AACTAAACCA 9225 ||| | || | || AATTAATT-A TACA...... .......... .......... .......... .......... 243 AAAAAAAAAA AAAGTGTACA TAAATTGAGA TCTCACCACA AAAACTCTCT GAATCAAAAC 9285 .......... .......... .......... .......... .......... .......... 243 AGTACCTCGC CGGAAAGTGA TGAATTCGCT TCGCCGGATA ATAAACAGTT GAGCTATACA 9345 .......... .......... .......... .......... .......... .......... 243 ACCCTAATTT GATTGCTTTG AAAATGAAAA CCAAAAAAAC AATAAAAATA CTTTAAATTG 9405 .......... .......... .......... .......... .......... .......... 243 AATAAGTTAA TGAAATTTTT TAAATATATA GCAGATGATG ACACGTCGAT TTGTGTGGGA 9465 | || .......... .......... .......... .-AAATT... .......... .......... 248 AAAGGGGGAG AATCAAATTC GTGGACGAGA AAAAACGGTT GAGATGAGAT CTGTTTCTGC 9525 .......... .......... .......... .......... .......... .......... 248 AATCTAATTG GTCCACGTAT GATGAAAACC GACACGTGTC AGTTAATTTA TATGTTTATT 9585 .......... .......... .......... .......... .......... .......... 248 ACCGGTGGCT CAATGTTTAG TGTTAATCCA CCTTTGGGAT TGCGGAGTCC ATTGAAATTT 9645 .......... .......... .......... .......... .......... .......... 248 TTATTTTGAT TTGATATTAA GTTTAAGAAA GTAAAATGAA TTTTTTAAAT TTTATTGCTT 9705 .......... .......... .......... .......... .......... .......... 248 TAAGTTAAAG ATCGTAATGA AAAAATAGAT TATTTTTTTT TAAAACAAAA AAAAAAGTAT 9765 .......... .......... .......... .......... .......... .......... 248 GATTAATAAA TTGAAATGGA AGAAATAATA TTGTATTTTA TGTTTGGTTA TACATAGTTA 9825 .......... .......... .......... .......... .......... .......... 248 ATTAGTTGTA GAATTACTTT ATCTCAATAT TTTTATATAA ACGAGATGAA TTATGTACTT 9885 .......... .......... .......... .......... .......... .......... 248 TATTACTCTT TATCTCAATA TTTTTATATA AACGAGATGA ATTATGTACT TTATTACTTT 9945 .......... .......... .......... .......... .......... .......... 248 TCATCTAGTA AACTAGTACA AAAAAAAATT TGGGAAGAAT TTAATAAAAT TACTAGAAGT 10005 .......... .......... .......... .......... .......... .......... 248 AGGGTAGGCC ACGTAAATTG AATTGTTGAT TGTTAAATAT CAACACTCGG GTAATTTTCA 10065 .......... .......... .......... .......... .......... .......... 248 TAATTAGAAA AAATAATCAT CAAGTATTAC ATTTTTATTA TCAAAAAACT TACACGAATC 10125 .......... .......... .......... .......... .......... .......... 248 CTTTGTTTCT TGTCAATTTT AGAAAGGAAA AATATTCATG AACTATTCGA AAATCGAAAT 10185 .......... .......... .......... .......... .......... .......... 248 AGGTTAACTT AACCCTCTAT CATGTTTTCA ACTTCAAAAT ATCAGACCAA AGAGGTCAAC 10245 .......... .......... .......... .......... .......... .......... 248 GGTTCAAACC GTGAAAACAA CCTCTTGCAG AGATTTTGTA ACGCTACGCA CAATACACCC 10305 .......... .......... .......... .......... .......... .......... 248 TTGTAATTCG TCAACAGAAG TTATAGTGCA CTACACTGCC TTTTCTTTTC AGTCATATCA 10365 .......... .......... .......... .......... .......... .......... 248 CAAATAGAAC TTAAGAAACA AATAGACAAC AATTTTACAG TTCGAGAGGC ACTGAAAACT 10425 .......... .......... .......... .......... .......... .......... 248 AGCAGCATTT TGTAGTCTAT CACCACAAGA TACAAGAAAC AAGTTTTGTC TTCTCAAACG 10485 .......... .......... .......... .......... .......... .......... 248 TGCTATGAAT CCACTGTACA CCTGCTTGTA CGTAAACGAA AAATATATCA TCGCAACCAT 10545 .......... .......... .......... .......... .......... .......... 248 GATGTTTGCA CTGAGCACTG GGCAGAAAGC AAAAAGCATT TCTCAAATAC GCTGTGTTTC 10605 .......... .......... .......... .......... .......... .......... 248 CAAAGGTTGA GATTCAGTAA GTTAGAGAAA TGCAGCAAAG CCGTCAACCT CTGTCAAAGA 10665 .......... .......... .......... .......... .......... .......... 248 AAACTATCAG TAAGTTTGAC AAATGCAGCA AAGCTGTGGA CCTCTGTCAA AGAAAACTAC 10725 .......... .......... .......... .......... .......... .......... 248 CGCCAGGACC ATCACTCCTC TGTATAAGAA CTCGGTCTCT TTCAATTGGC GTCAGATGTA 10785 .......... .......... .......... .......... .......... .......... 248 GCTTGTGGCA CCTCTTGGTA TATGCCCGAT TCATCATTAT ATGAGTACCT ACATTTGATA 10845 .......... .......... .......... .......... .......... .......... 248 CATCAATGAA AAACAGTTAA CAAAAGTACT ATTTGCGACA GTTCAAATCA CACTACTACA 10905 .......... .......... .......... .......... .......... .......... 248 ATTGGGTCCA CACAAATTGC GAGGAACCAA TCGAAAATAG GAAGATCAAT ATCCCGATTT 10965 .......... .......... .......... .......... .......... .......... 248 TGTCCAGTTA AAACAGTTGA GTGTCATTAC CATTGTCCTG ATGATGCATT GCAATACAGT 11025 .......... .......... .......... .......... .......... .......... 248 CCAGATGATG GATCATAATA GTAGCCCAAA CTGCTGCTGT AGTAATAACT GAGACGAAAA 11085 .......... .......... .......... .......... .......... .......... 248 ATACAAAAAG AGTGTAAGAA GTTTAAGACA GAAATACAAA AAGAAATGCC CGACATTAAT 11145 .......... .......... .......... .......... .......... .......... 248 GACTGATTTC AACTTTGGAG GCGCAGTTCG TCAAACAATG GAATTGAAGT TCCTAGACAG 11205 .......... .......... .......... .......... .......... .......... 248 ATAGAACATA TGAACCTTTC ATGTCACTCT CAACATCCCA TATCTGCTCT TATCAAGTCA 11265 .......... .......... .......... .......... .......... .......... 248 ATGTAGAAAG ATTAGACAAG CAGGAAACCC ATGGTTATTT GGTAGTCCCT GCTACTGCTA 11325 .......... .......... .......... .......... .......... .......... 248 AACAAAGGTG GATATCATAT CGAGCAAACA AACTAGCATA CATGAACTTC CAAAATCAGT 11385 .......... .......... .......... .......... .......... .......... 248 ATGTGGGCAG AAACTGACAA TGGAATGGCA ACCCGACAGG AACACTTCTG CCAATATTAG 11445 .......... .......... .......... .......... .......... .......... 248 CTTGAAAAGA ATGTTGAAAG AGTATAAATT GGAACGGAAA ACTCCGAAAG AACTATGTTC 11505 .......... .......... .......... .......... .......... .......... 248 AAATAAATTT CATAGGATCC TCTTCCTTTA GAACTACAAC ATTGGGTGAT TCTTTGATTG 11565 .......... .......... .......... .......... .......... .......... 248 AACAAGGAAG ATCCCTACAA TAATCTGCGC TCCCACTTGA ATCCAGTGGA ATTTCAAAAT 11625 .......... .......... .......... .......... .......... .......... 248 GAGACGGTTT GATTTCTTAT TTACTAGGAT GTCTGCACTC TATGAGCAGG AGGAGAAAAG 11685 .......... .......... .......... .......... .......... .......... 248 TAGTACAATG AGCTAAAAGG TAGAAAACAT ACCCAGAGGA CTCATCAAAG ATATAATCAC 11745 .......... .......... .......... .......... .......... .......... 248 CACTTGAATC CAGTGGAATT TCAAAATGAG ACGGTTTAAT TTCTTATTTA CTAGGATGTC 11805 .......... .......... .......... .......... .......... .......... 248 TGCACACTAT GAGCAGAAGG AGAAAAGTAG TGCGATGAGC TAAAAGGTAG AAAACATACC 11865 .......... .......... .......... .......... .......... .......... 248 CAGAGGACTC ATCAAAGACA TAATCACCAT GCTGATCACC TACAGTTTAC ATTGAGTGGG 11925 .......... .......... .......... .......... .......... .......... 248 AGTCACGTAT GTGGAAAGGG GAATATGCTT AAAAAGAAAC TTTTAATCTT ATCTCACATA 11985 .......... .......... .......... .......... .......... .......... 248 AAATAATGGA CTAAATTTGT CAATAATGTC AATTGTAGAT GTGTTTAGAG ATCAAATTAC 12045 || || | | | ||| || .......... .......... .......... ........AT GTTTATTTTG ATCGAAA... 267 CTCCATTAGG GGCAGGATTA GCTGGAGTAT TTTCATCGTC TTCACCAAAC ATGTCAAATG 12105 .......... .......... .......... .......... .......... .......... 267 CATCATCGCT CTTGCTAGCT GAGTTATATG AATTAGATGA AGCCACATCT GTCTTATGCA 12165 .......... .......... .......... .......... .......... .......... 267 TAGGATGTCC TTCTGCAGTA GCAGTTGACC CACTGGGGAG GAAACCTTCA TCGAGAATAC 12225 .......... .......... .......... .......... .......... .......... 267 TATAGGGCTT AGGCTGCATT GATTCACTGG ATTTACCCTG TCTTGCTTGA GCTAACTTCT 12285 .......... .......... .......... .......... .......... .......... 267 CGTATCCCTC TGGATCAACA CAAAATGCAA ATAAGATAAT ACCGTCACTC ATGCAGCTCA 12345 .......... .......... .......... .......... .......... .......... 267 ACAGAAATGT CAGCGCATGC AAGTGAAAAT TAATTGTTCT TTACTTCAGA ACCCTAGCAT 12405 .......... .......... .......... .......... .......... .......... 267 AAAACTTAAG TCACCAATAT CATCCTTATA GTAGAAAAAA GGCGAAGCCA GTAACCAGGG 12465 .......... .......... .......... .......... .......... .......... 267 GAAATACTAC TTCCTGTTTT TCTGTATATT TCCCCTCCAC GGCCCCCTTC CCCCCCCCCC 12525 .......... .......... .......... .......... .......... .......... 267 CCCCCCCCCC TAAAAAAAAA GAAAGTTTTA ACCAGTTTGG TTAGGGAAAA GACAAGAATG 12585 .......... .......... .......... .......... .......... .......... 267 TAATGGGAAA GAGACAAGAC TGCCATCATA TATTTTCCAC TTCCTTGAGT TGTGGTCATG 12645 .......... .......... .......... .......... .......... .......... 267 GTGGATATAA TGTCAGAGAA AAGAGGGAAT AACACAATGA TAAGTACCTG CTTCCCGCTG 12705 .......... .......... .......... .......... .......... .......... 267 GAAACTCTCT TGCTTTTCTT CATACACATC TGTGAAACAA GAAATAGACT AAAAGATTAG 12765 .......... .......... .......... .......... .......... .......... 267 AACCGTCCTT GGTATTCTAT TCAACTATTA CCTTTCAATA CAGTTATTAT GCAAACACAC 12825 .......... .......... .......... .......... .......... .......... 267 TTAACTGTAA TCTCCATTCT CCATTAGCTT CATAGCATCT TCTGTTAGCT GATCAAACAG 12885 .......... .......... .......... .......... .......... .......... 267 CTGCTTAGTT TCTCCAGACA TTTTGCCCTT GTTATTGTTT GAGGTACCTT TCAATCTCCT 12945 .......... .......... .......... .......... .......... .......... 267 TAAACCTCGC AAAACCTGTT GGAAGTAAGT TCTTCCCATG AGTCCCAAAG CAATAGAGAA 13005 .......... .......... .......... .......... .......... .......... 267 CAACATCAAC TTCATAGCAC AAAGATTCTT GGCAGAAGTA TTCAAACATA ACAAGTGGAT 13065 .......... .......... .......... .......... .......... .......... 267 AACTTTATCG TACAAGGCCT GCCAGGTTCA TATGAGGCAG CTAATACAGG AATAAAAACT 13125 .......... .......... .......... .......... .......... .......... 267 AAATGGTCTA TGGTCTAAAT TAACAATAAT GTCGAGAGAA CTAGCTGCAA AGCAAATCCG 13185 .......... .......... .......... .......... .......... .......... 267 CTGTGAGCAA ATTGCAAATA GGCAGCACGA TTTGTTTGGT TGGAAATGAA GGGACAAAAA 13245 .......... .......... .......... .......... .......... .......... 267 TCAACCAGCT TCTCAGTTAC CATTATCAAA AAAAAAAAAA TCAACCAGCT TCCAGAAATT 13305 .......... .......... .......... .......... .......... .......... 267 ATCAAAAACA AAATGATTGA TCACAGCTCT GATACCCTAA ATGCTAAACA TGGTAATAAA 13365 .......... .......... .......... .......... .......... .......... 267 ACAAAAGAGT GATACATACT GAAAATAAGA GAGAAGGGTA TCCTGGTGTT CTTAAACACC 13425 .......... .......... .......... .......... .......... .......... 267 ACACCAGATT CAGATATTAA CCTTCCAAGC AAATAGGCAA AGCCTTCTCT CAAACAAAAT 13485 .......... .......... .......... .......... .......... .......... 267 CTACTACCGT CTTCCTTTAA TTGAATAGCA TGTACCCTCA AAGCAACCTA TGTTTAACAG 13545 .......... .......... .......... .......... .......... .......... 267 ATTTTTTGTA GAGAATAGAG AGAGTGACCT GCCAGCACCC CCAATGGACT GGATGCCAGA 13605 | || |||| ||| AATTCATGTA GAGT...... .......... .......... .......... .......... 281 TGACACACCT CTGCCGTGCA GGCATCAGGA ACTTTTGGGT GAAGGCCTTA CACTTGAATA 13665 .......... .......... .......... .......... .......... .......... 281 TCCTGATTGA CAAGGATAGA TGACCAAGGG AGGGAAGGGG AAAAGAATAA ATGGTGTGGT 13725 .......... .......... .......... .......... .......... .......... 281 TTACCAGTAT GCTGGTCTGA TGCAAAGCAT CTTATCATTA ACTTATTCAT ATTTGGAGAG 13785 .......... .......... .......... .......... .......... .......... 281 AGGAAAGCTG TCAGAGGAAG CAAGCAAGTA ACTGACTGAG CAATACAGCA AACAATATGT 13845 .......... .......... .......... .......... .......... .......... 281 TAAATTTACT TGTTATTGAA TGGATGGCTG TGTTTAGAGG AAGTATTTGT AGTGGAAATA 13905 .......... .......... .......... .......... .......... .......... 281 AGTGGAGTTG TCAAAATATC AGATGCAAAG TTGATGGTGC CAATGTCTAA CTACCATGAT 13965 .......... .......... .......... .......... .......... .......... 281 GAAATTTAAT GATGAACATA GCTCCTACAG GGTGCGCAAA ATTTTCGAAA GGATGTGCTG 14025 .......... .......... .......... .......... .......... .......... 281 TTCTGACGGG TACCAAAAGT TCTCCTTCAG AAAAGCCAAT GAGGTATTTA TTATATTGCG 14085 .......... .......... .......... .......... .......... .......... 281 GTGATTCTAA AGTTTTAACC TACATATTTC TGGAATTGGC TTTAACATGC ACAAGTGCAC 14145 .......... .......... .......... .......... .......... .......... 281 ACGACTGTTA AATTCAAATA TTAAATGCCT TGGGAATGAG CCCCCATAAA ATCCACCTAG 14205 .......... .......... .......... .......... .......... .......... 281 TTCTTTTTTA ACTACTCCAA TTCTAATATG ATTCAAGAAA CATGCCTTGA CTCATTCATT 14265 .......... .......... .......... .......... .......... .......... 281 TGTGTTCAAC CAAAATTTGA CAAAAAGTTG TGAAATAACA ATGTAAGGGC CCGTTTGGAT 14325 || | | ||||| |||||||||| .......... .......... .......... .......TCA TTCTTAGGGC CCGTTTGGAT 304 GGGCTTA-AT AAAAGCAGCT TTAAAAAAGT ACTTTTGAAA GTGCTGAAAC TTATTTTTAA 14384 || |||| | || | | || GGACTTAGCT TTAAAAAAGT ACTTTTAA.. .......... .......... .......... 332 AATAAGCAGT TATGCGTTTG GATAAAAGTG ATGAAGTTAA AAAAGCTTGA TGTGTTTGGC 14444 ||| ||||| |||| |||||||||| ||||||| | ......AAGT TATGCATTTG GATAAAAGTG TTGAAGTTGC TATG...... .......... 370 AAATAAGTGC TGATAAACAC CTTTTTAAAT CAAAATGTCT TAAATGCTCT TAAAAGCTGT 14504 .......... .......... .......... .......... .......... .......... 370 TAACATAATA AAAGTTAATT TATTTATATT TTACAGCCAT AAATAATTAT ATTTTGCTAT 14564 .......... .......... .......... .......... .......... .......... 370 CATTCACATA TTTCTTTCTC ATCACAAATT ATTTATAAGA GGAATATAAA CTTATTATAG 14624 .......... .......... .......... .......... .......... .......... 370 ATTTAAAAGA TATATAATTT GAATAGATTA AAGAACGATT TAAGATTTTA TTTTAGTTTC 14684 .......... .......... .......... .......... .......... .......... 370 ATCCATAGGT AATAATAATT GTCTATCATT CACATATTTC TTTATTATCA CAAATTATTT 14744 .......... .......... .......... .......... .......... .......... 370 ATAAGAGGAA TATAATTTTT TATTTAAGTT ATATGTGCAA CTTATTTTAC ATTTAAATAA 14804 .......... .......... .......... .......... .......... .......... 370 TATATAATTT GAATAGATCA CTTGAAAGAT TTAAGATTTA TTTTATTTTC ATTCATTAGT 14864 .......... .......... .......... .......... .......... .......... 370 AATAGTAATT GTCTATCATC CACACGTGAA AAGGAAAAAA TAGAAGAAAG AGATGTTAGG 14924 | || ||||||| || | ||||| | |||||||| ||||||||| .......... .........C CAAACGTGAA AATGGAAAAA TGGAAGAAAG AGATGTTAGA 411 ATTATGTGGG TAATTTGAAG ATTGTATAAA AATATTAAGG GCAAACAGGT AAAAATGTGG 14984 |||||||| ||||||| || |||||||||| |||||||||| ||||| || | |||||||||| GTTATGTGGA TAATTTGGAG ATTGTATAAA AATATTAAGG GCAAAAAGAT AAAAATGTGG 471 TCAACTTAAA ACAGCTTATA AGCTGGGGAA AAAAAGCACC CCTACCCCAG CTTTTAACTT 15044 |||||||||| |||||||||| |||| || |||||||||| |||||||||| |||||||||| TCAACTTAAA ACAGCTTATA AGCT--AAAA AAAAAGCACC CCTACCCCAG CTTTTAACTT 529 TTGACTTAAA ATAAGTTTTT TTT 15067 ||| ||||| |||||||||| ||| TTGGCTTAAT ATAAGTTTTT TTT 552 hqPGS_C04HBa0127E11.1+_SGN-E374844+ (14391 14428,14884 15067) ******************************************************************************** EST sequence 140 -strand 346 n (File: SGN-E391901-) 1 ATACTCTTCA CCCATGAGTT TGGACTGATT GACAAGAAGG AACTGGCTCC ACTTCAAGAG 61 ATTATAGAAT CCATCATCGT CCCATACTGA ACAATCGTGA TATTTCACTG TGCTGCTAAA 121 GCTGGAACTA AATAGTGTAA TGTAATGCAA TAAAGTTTCT CGTGGTCATC CAAAGTGTAT 181 AGCCTCAGCT GACAATTTGA AGTGTCTATG AATGTATAAT GGTTGTAGCT TTTTCTATAT 241 TGCTTTTAAG TAAAGTGCTT TTGTGACCCG TTTGGATGGG CTTAGTAAAA GCAGCTTTAA 301 AAAAGTACTT TTGAAAGGAC TGAAACTTAT TTTTAAAAAA AAAAAA Predicted gene structure (within gDNA segment 11045 to 15066): Exon 1 14315 14389 ( 75 n); cDNA 267 341 ( 75 n); score: 0.947 MATCH C04HBa0127E11.1+ SGN-E391901- 0.947 75 0.217 C PGS_C04HBa0127E11.1+_SGN-E391901- (14315 14389) Alignment (genomic DNA sequence = upper lines): CCCGTTTGGA TGGGCTTAAT AAAAGCAGCT TTAAAAAAGT ACTTTTGAAA GTGCTGAAAC 14374 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| | ||||||| CCCGTTTGGA TGGGCTTAGT AAAAGCAGCT TTAAAAAAGT ACTTTTGAAA GGACTGAAAC 326 TTATTTTTAA AATAA 14389 |||||||||| || || TTATTTTTAA AAAAA 341 hqPGS_C04HBa0127E11.1+_SGN-E391901- (14315 14389) ******************************************************************************** EST sequence 141 -strand 618 n (File: SGN-E249253-) 1 GAAAAGGGAA AAATAGAAGA AAGAGAAGTT AGTGTTATAT GGGTAATTTG GAGATTGTAT 61 AAAAATATTA AGGGAAAAAA CATAAAAATA TGGTCAACTT AAAACAGCTT ATAAGCTAAA 121 AAAAAAAGGC ACACTTTTGG CTTAAAATAA GTTTTTTTAA CTTAAAATAA GCTATTTTGA 181 GTATTGCCAA ACATTTAAAT AAGTCAAAAA CCAGCTTTTA AGTCAGTTTG ACCAGCTTTT 241 AAGCTGAGCC AAACAGGCTC TAAAGCTCGA GATAGTGAAA CTCTAAGATG ATCAATTAAG 301 GAACTGGTGT TGGTTGTTTT TAGTAGATCT CTTACTTGTT CAAATGCAGG CATGAGGAAG 361 AGGAGTCCAG TTTGAAAGTA GTCAATTTGA AGCTCAAGAA TGTCCCATGG TGTCAACTCA 421 ATAATCTTAC AATTATCTGT ATGGTGCTGA CTTTTTCCCT CAGCTTTAAC CGTCCATTTT 481 GAAATGATGG ATACCTTGGA AGCCATAGCT TTCAATCACC TCTGTATTGG GTAAATCTGA 541 AGTTAAATCA GTGTGCTCAG CGGCGGAACA GCTTAATAAC CGGAAAAGTT GCCGGAAACG 601 GGACTTGAAC TGGTAACC Predicted gene structure (within gDNA segment 13823 to 19913): Exon 1 14892 15173 ( 282 n); cDNA 1 264 ( 264 n); score: 0.865 Intron 1 15174 15988 ( 815 n); Pd: 0.000 (s: 1.00), Pa: 0.979 (s: 0) Exon 2 15989 15995 ( 7 n); cDNA 265 271 ( 7 n); score: 0.857 Intron 2 15996 16962 ( 967 n); Pd: 0.000 (s: 0), Pa: 0.950 (s: 0) Exon 3 16963 16968 ( 6 n); cDNA 272 277 ( 6 n); score: 0.833 Intron 3 16969 18901 (1933 n); Pd: 0.000 (s: 0), Pa: 0.914 (s: 0) Exon 4 18902 18925 ( 24 n); cDNA 278 299 ( 22 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-E249253- 0.865 319 0.516 C PGS_C04HBa0127E11.1+_SGN-E249253- (14892 15173,15989 15995,16963 16968,18902 18925) Alignment (genomic DNA sequence = upper lines): GAAAAGGAAA AAATAGAAGA AAGAGATGTT AGGATTATGT GGGTAATTTG AAGATTGTAT 14951 ||||||| || |||||||||| |||||| ||| || |||| | |||||||||| ||||||||| GAAAAGGGAA AAATAGAAGA AAGAGAAGTT AGTGTTATAT GGGTAATTTG GAGATTGTAT 60 AAAAATATTA AGGGCAAACA GGTAAAAATG TGGTCAACTT AAAACAGCTT ATAAGCTGGG 15011 |||||||||| |||| ||| | ||||||| |||||||||| |||||||||| ||||||| AAAAATATTA AGGGAAAAAA CATAAAAATA TGGTCAACTT AAAACAGCTT ATAAGCT--- 117 GAAAAAAAGC ACCCCTACCC CAGCTTTTAA CTTTTGACTT AAAATAAGTT TTTTTTAACT 15071 ||||||| | | || | | |||||| ||| |||||||| | |||||||||| -AAAAAAA-- A-----AAGG CA-C-----A CTTTTGGCTT AAAATAAG-T TTTTTTAACT 162 TAAAATAAGT TGTTTTGAGT ATTGTCAAAC AGCTAAATAA GTCAAAAACC AGCTTTTAAG 15131 ||||||||| | |||||||| |||| ||||| | ||||||| |||||||||| |||||||||| TAAAATAAGC TATTTTGAGT ATTGCCAAAC ATTTAAATAA GTCAAAAACC AGCTTTTAAG 222 TCAGTTTGAC CAGCTTTTAA GCTGAGCCAA ACAGGCTCTA AATCTTAACA GCTCAACCAT 15191 |||||||||| |||||||||| |||||||||| |||||||||| || TCAGTTTGAC CAGCTTTTAA GCTGAGCCAA ACAGGCTCTA AA........ .......... 264 AGCCTCTCCA TTTCTCATTT GAAAACAACA GCAAAAAGCC ACAAAGAACT TTGCTTGGAC 15251 .......... .......... .......... .......... .......... .......... 264 AATGAAGAAA ATATAATATG CAAGCAACAG CAAACACAGT ATCAATATGC AACCATTAGT 15311 .......... .......... .......... .......... .......... .......... 264 ACGAGATAAT ACATGAGGGA AAAGCAGATA AGATTCATGT TGAAACCACC ACTGAAGGAA 15371 .......... .......... .......... .......... .......... .......... 264 CCAGAAATGA GAGCACATAA AATATTTAGA AGATATTAAA AAAAATCTAC AAGCAAATGC 15431 .......... .......... .......... .......... .......... .......... 264 CATCAACAGT ATTTATCCAT TAAAAAAAAT TAACAAAAAA AAACTAGAAA ACACGAGGTG 15491 .......... .......... .......... .......... .......... .......... 264 GGAATAGTTA CTGTTTCTCC TGGTTCGAGC ACATCAGCAA TTCGCCTCTT CATCTTTCCT 15551 .......... .......... .......... .......... .......... .......... 264 AGTTGTTCTG ATGTAAGGTC TTGAATCTCA TCTTCATTTG ATATCTTGAT AGCTTTCTTC 15611 .......... .......... .......... .......... .......... .......... 264 CCAGAATATG TTTTCTCAGT ATCAACACTA TCAAGCCATG CATCCTGTAC ACTTACTAAG 15671 .......... .......... .......... .......... .......... .......... 264 ATCAGGAAAA GATGCAAGGA ATGGGGCCTG GGGTAGAAAA TGTTTGATGT AAGACTAGCA 15731 .......... .......... .......... .......... .......... .......... 264 CCTTTATCTC ATTTTCATTT AAATATTCAA CATAGTTTCC TGATGCATCA AAATAACCTT 15791 .......... .......... .......... .......... .......... .......... 264 CTTCTCTCTC TTTATTCAGA TTAAAAGGTT CTATTGCAAT CCCATCATCA ATGAATGTTT 15851 .......... .......... .......... .......... .......... .......... 264 CATTTTCCTG CAACCAGAGA TATTCCATTA GTTACACCAG AAAGGAATAC AAGAAATACA 15911 .......... .......... .......... .......... .......... .......... 264 AAGTTTAGCC ATAGAGCAAT TAGAATATGC AAAATTTGAC ATTAATGATA ATTCCAAGTA 15971 .......... .......... .......... .......... .......... .......... 264 CTTCAGTTTG TTTATAGGCT GGAGAGCCGA ACCAAAGAAC AAATAACAAT ATAATTCCAC 16031 ||| ||| .......... .......GCT CGAG...... .......... .......... .......... 271 GAATTTAATG TGACAGCACA TGAAGCAGAA ATAATGAAAT TTAATTAACA TTTATGTTTT 16091 .......... .......... .......... .......... .......... .......... 271 GAGAGTTTAA GTAAAAGAAA TAAAATGCTC GGAAAATAAA ACAGAAGGAA ACAAAGGAAG 16151 .......... .......... .......... .......... .......... .......... 271 TAAAGCTACA AATTTTATTT CCATTGTTTC ATTGGCGAGG GAATTATGAA GAACAGGAAA 16211 .......... .......... .......... .......... .......... .......... 271 AATTTATTCA AGGGAACTCA GATAAATTCT TTTCTTCTTT GTAATCCTAT TCTCATCTCT 16271 .......... .......... .......... .......... .......... .......... 271 ATGCAAATTA AAGTACGTGC AGAATTTAAA TCTTACCCAT TTTCTATTTG TAAAGTTCAA 16331 .......... .......... .......... .......... .......... .......... 271 AAACCCACAG TTCATAAAGT CCAAGGAAGA ACTCTACATA AGATAGAATG AGACAAGCCT 16391 .......... .......... .......... .......... .......... .......... 271 ATTGGACACA GAAACAACGA TTCATGCTCA GTGAATTTAA AAGTGAAAAG TGCAAAAAAA 16451 .......... .......... .......... .......... .......... .......... 271 GCGTCTGCGA GGCTTGAAAT GAATAGGAGA GAAGTAAGGC ACATGCTTTA TTAAGTGAAG 16511 .......... .......... .......... .......... .......... .......... 271 CGCACAATTA TTTGATGATG ATTCCTTTAC ACATGGCATG CAACCTTATG CTATTCCTTT 16571 .......... .......... .......... .......... .......... .......... 271 TGATGAGCCG CTATATGCTA AGAAAAAACA CCATTCTGTC TCCTTGACCT TTGTTTCAAG 16631 .......... .......... .......... .......... .......... .......... 271 AGCATAAGGA TTGATATGTA TTAGTGGGGT TTTTAAAATG AAGTTACAGA TGGTCCCTAT 16691 .......... .......... .......... .......... .......... .......... 271 TTTGCTTACG TTACTACTTA CTACTTGGGG AATATAATTA GCAATCATGA TTATTTATGG 16751 .......... .......... .......... .......... .......... .......... 271 TTTTCAATTG TGCATGAGTA CCCATATCTC AGCTCTTTTA AAGAAGATTA CCCATATCTA 16811 .......... .......... .......... .......... .......... .......... 271 AGTTGTTCTA GCTAAACACG CAGCACAAAT CATGCCAAGC CCCAAAAAAG TTTGTAATAA 16871 .......... .......... .......... .......... .......... .......... 271 TCCTAGTATC ACTTCCTTAT CAAGAGATAT GAAGTAGACA TCAGATATCC ACAAAGTACC 16931 .......... .......... .......... .......... .......... .......... 271 TAACTACAAT CAAACAATTA TGGAATAACA GATATTGGAA GGACAAACCT CATATTCCAC 16991 ||| || .......... .......... .......... .ATAGTG... .......... .......... 277 TTCTGCCCGC GATATGTCAG CTATTTCACC TTCGTTTTCT TCATCAAGGA GTTCCGCTGT 17051 .......... .......... .......... .......... .......... .......... 277 TATTTGATTC CGCCGTGCCG AACGCTCTTT GGCTGCATTG CGAGGATCTG TCCGCCCACT 17111 .......... .......... .......... .......... .......... .......... 277 AGGTTTATCT TCACACCCAT CAATCGTGGT ATCGCCCTGC TTTGCCTTCT TACCCTTTGG 17171 .......... .......... .......... .......... .......... .......... 277 GAACCTTACA CGCTTCTGCC TGTGATGTTG AGGAAGAAAG CAACATGTCA ATGCAAACAT 17231 .......... .......... .......... .......... .......... .......... 277 CCTTAAAATC CAGCATCATA AATGAAACTA TTTTGAACCC AACAAATGAG GTTGTCATAG 17291 .......... .......... .......... .......... .......... .......... 277 AGCATGGCAG ACGTCACATG GAAAAAAAAA ACGCTATTTG AAGTTGTATT ACTTGCTATT 17351 .......... .......... .......... .......... .......... .......... 277 GCTGTCTCAT GAAACACATT ATCTTTACAA GGAAAATAAC AGTAGGTAAA AAAGATCTAT 17411 .......... .......... .......... .......... .......... .......... 277 TTTTTCTCGT ACTAAACTCA TGACAGTCTC AACAACAAAA TACAACCTCT AATCTGAAAA 17471 .......... .......... .......... .......... .......... .......... 277 AGAAAGCAGT CTACTTTATC TTCAAAGACA AACTATTGAG CACTGGAATG AAATGATCAC 17531 .......... .......... .......... .......... .......... .......... 277 AGTTAGAGTA AATAGATATA GAGATTACAT ATAACTAATC CAATTAGTTT GGGCATGAGG 17591 .......... .......... .......... .......... .......... .......... 277 CATAGTCACT GTATAATTCC TTAAATCTCC AACAAATAAA GTATTTTCTT GCATAGTTCT 17651 .......... .......... .......... .......... .......... .......... 277 CTCAAGGCCA AACACACCCT TCTTTATTAG ACATTTTCTA GGTACTAAGA ATACACAATC 17711 .......... .......... .......... .......... .......... .......... 277 CACCCATTCC CACTAGATTT TTGCTCCAGG TTCACATCAT ATATGAAATC AACGGTAATT 17771 .......... .......... .......... .......... .......... .......... 277 CAGATTAGGA AAAAACAAGC TAATAGAATC TGGGCGCATT TGCAGAATAA CAAAAATAGA 17831 .......... .......... .......... .......... .......... .......... 277 TAGCAGCTGA AAGAAAGCAA ATCCAAGTAC ATACTCCTGA ACTCCTCTGG GAAGCTCCTA 17891 .......... .......... .......... .......... .......... .......... 277 AAATTCTTAC AATAATGACA TAATAAATCA ATCCCAGCAG AAGCAAAAAA TACTATGTGT 17951 .......... .......... .......... .......... .......... .......... 277 ATTCTCCCTA TCTATTTAAG CCTCAATTGA CACAGTAAAG TGATATCTAT GTGGATGGGA 18011 .......... .......... .......... .......... .......... .......... 277 GGTAGTAGAG ATCCCATAGG ATAGAATTAA TTGAGTTATA AAAACAAAAA TGAGCTTCCT 18071 .......... .......... .......... .......... .......... .......... 277 TACTTATTTA TCTATTTTTA TCTTTCTATT GATACAAAAT ACTCCCCCTA GTTCACTTCT 18131 .......... .......... .......... .......... .......... .......... 277 TTCGTTTTTT AGACAACTGT AGTTACTAGA CCAGCTTATG CGCACCTTAA CTAATTACAT 18191 .......... .......... .......... .......... .......... .......... 277 AGATATCTGT CGCTCCCCAC CAAAACAGCT ATAAAGTAAC TCTATCCTCA AGGCTAGGAC 18251 .......... .......... .......... .......... .......... .......... 277 AGGTAGAAAG AAATCACTTT TCTTCTCTAT GTTGGAATTT GAACCTTAGA CCTCATGGTT 18311 .......... .......... .......... .......... .......... .......... 277 CTCAACTCAC TTCATTAACC ACTAGATCAC ACCCTTCCTT ATTCACTTTT TTATGAAATC 18371 .......... .......... .......... .......... .......... .......... 277 AATGTCATTA AATTTCAATG GTAAAATAAA TTGGTTTCCT TTCGCATTAT GTTTTTATTA 18431 .......... .......... .......... .......... .......... .......... 277 TGATTGTGGT GTTCACGCCA GTTTTCCCAC ACCTCAACTA ATTCCACCTC TCACCATTAA 18491 .......... .......... .......... .......... .......... .......... 277 CAACTATCAG GTAACTCTGT CCACCAAAAC TAGGACAAAT AGAAAAAAAT CATCTAGCAT 18551 .......... .......... .......... .......... .......... .......... 277 TTTTGTCTCT ACTAGAAATT GAACATTAGA CCTCATGATG CTCAACCCAC CTCCCTTGAC 18611 .......... .......... .......... .......... .......... .......... 277 CACTAAGCCA CACCCTTTGA GAAGTTTTTT GTTAATTTTA ATGACCTTGG TATCCAAATA 18671 .......... .......... .......... .......... .......... .......... 277 CATTGGATAC GTCCCACCTC CCACCAAATA ACTTTGTTGT CTTCCCTGAG TTTTATAAGA 18731 .......... .......... .......... .......... .......... .......... 277 CCTCAGAATT CTCAACCACT TCATTAATCA CTAAGCCACA CCCTTGGGGT TTCACCACTA 18791 .......... .......... .......... .......... .......... .......... 277 TGTTTCAAAC ATATACAAAA TATTATTTAC TAAGAAATCA CAAACTTACA GCTCAAATTT 18851 .......... .......... .......... .......... .......... .......... 277 TATATTCCGA AATCAATATA ACAAATGAAT ATGAGCTTTC ATCTGTGCAG AATCCCTAAG 18911 || | ||||| .......... .......... .......... .......... .......... AAACTCTAAG 287 TATGTTCAGA ATAA 18925 ||| ||| | ||| -ATGATCA-A TTAA 299 hqPGS_C04HBa0127E11.1+_SGN-E249253- (14892 15173,15989 15995,16963 16968,18902 18925) ******************************************************************************** EST sequence 40 +strand 666 n (File: SGN-E237992+) 1 ATGTTAGAGT TATGTGGATA ATTTGGAGAT TGTATAAAAA TATTAAGGGC AAAAAGATAA 61 AAATGTGGTC AACTTAAAAC AGCTTATAAG CTAAAAAAAA AGCACCCCTA CCCCAGCTTT 121 TAACTTTTGG CTTAAAATAA GTTTTTTTTT TTAACTTAAA ATAAGTTATT TTGAGTATTG 181 CCAAACAACT AAATAAGTCA AAAATCAGTT TTTAAGTCAG TTTGATCAGC TTTTAAGCTG 241 AACTAAACAA GCTCTTAGAC AATAATTTTT TCTTTTACGT ATCTCCACTT AAATAGTAGA 301 CATTATAAGT TTGAGGCAGT TCTCAACCAT GTAACCTAAG TCACAAATTT ATGAGTTTCC 361 AATTTATGCA CTTTGGTTAA AAAAATAACT ATTCATATAA ATTTCTTTTT TTATTATTTT 421 AATCGAAAAA AATCATCTAG AGTCGATTGT TAGAAATAGT TGCAACTTGC AACTATGTAA 481 CACAGAGATA ATAATTTTGT CTTTTTACGT ATCTCCACTT AAATACCAGA CATCACTAAC 541 TTAAGTCACA AACCCCTTGA CCTTCCCAAT TATATTTAAG CACTAGAAAA CTTATATATA 601 AAAAATCGAA TTTAACGCTT AATATTTATC AACTAACACC TAATTGTCTT TTGTTTCATT 661 TGGAAA Predicted gene structure (within gDNA segment 13804 to 20760): Exon 1 14917 15165 ( 249 n); cDNA 1 250 ( 250 n); score: 0.890 Intron 1 15166 16224 (1059 n); Pd: 0.889 (s: 0.88), Pa: 0.000 (s: 0) Exon 2 16225 16251 ( 27 n); cDNA 251 275 ( 25 n); score: 0.704 Intron 2 16252 20094 (3843 n); Pd: 0.188 (s: 0), Pa: 0.236 (s: 0) Exon 3 20095 20107 ( 13 n); cDNA 276 287 ( 12 n); score: 0.615 MATCH C04HBa0127E11.1+ SGN-E237992+ 0.890 289 0.434 C PGS_C04HBa0127E11.1+_SGN-E237992+ (14917 15165,16225 16251,20095 20107) Alignment (genomic DNA sequence = upper lines): ATGTTAGGAT TATGTGGGTA ATTTGAAGAT TGTATAAAAA TATTAAGGGC AAACAGGTAA 14976 ||||||| | ||||||| || ||||| |||| |||||||||| |||||||||| ||| || ||| ATGTTAGAGT TATGTGGATA ATTTGGAGAT TGTATAAAAA TATTAAGGGC AAAAAGATAA 60 AAATGTGGTC AACTTAAAAC AGCTTATAAG CTGGGGAAAA AAAGCACCCC TACCCCAGCT 15036 |||||||||| |||||||||| |||||||||| || |||| |||||||||| |||||||||| AAATGTGGTC AACTTAAAAC AGCTTATAAG CT--AAAAAA AAAGCACCCC TACCCCAGCT 118 TTTAACTTTT GACTTAAAAT AAG---TTTT TTTTAACTTA AAATAAGTTG TTTTGAGTAT 15093 |||||||||| | |||||||| ||| |||| |||||||||| ||||||||| |||||||||| TTTAACTTTT GGCTTAAAAT AAGTTTTTTT TTTTAACTTA AAATAAGTTA TTTTGAGTAT 178 TGTCAAACAG CTAAATAAGT CAAAAACCAG CTTTTAAGTC AGTTTGACCA GCTTTTAAGC 15153 || |||||| |||||||||| |||||| ||| ||||||||| ||||||| || |||||||||| TGCCAAACAA CTAAATAAGT CAAAAATCAG TTTTTAAGTC AGTTTGATCA GCTTTTAAGC 238 TGAGCCAAAC AGGCTCTAAA TCTTAACAGC TCAACCATAG CCTCTCCATT TCTCATTTGA 15213 ||| | |||| | TGAACTAAAC AA........ .......... .......... .......... .......... 250 AAACAACAGC AAAAAGCCAC AAAGAACTTT GCTTGGACAA TGAAGAAAAT ATAATATGCA 15273 .......... .......... .......... .......... .......... .......... 250 AGCAACAGCA AACACAGTAT CAATATGCAA CCATTAGTAC GAGATAATAC ATGAGGGAAA 15333 .......... .......... .......... .......... .......... .......... 250 AGCAGATAAG ATTCATGTTG AAACCACCAC TGAAGGAACC AGAAATGAGA GCACATAAAA 15393 .......... .......... .......... .......... .......... .......... 250 TATTTAGAAG ATATTAAAAA AAATCTACAA GCAAATGCCA TCAACAGTAT TTATCCATTA 15453 .......... .......... .......... .......... .......... .......... 250 AAAAAAATTA ACAAAAAAAA ACTAGAAAAC ACGAGGTGGG AATAGTTACT GTTTCTCCTG 15513 .......... .......... .......... .......... .......... .......... 250 GTTCGAGCAC ATCAGCAATT CGCCTCTTCA TCTTTCCTAG TTGTTCTGAT GTAAGGTCTT 15573 .......... .......... .......... .......... .......... .......... 250 GAATCTCATC TTCATTTGAT ATCTTGATAG CTTTCTTCCC AGAATATGTT TTCTCAGTAT 15633 .......... .......... .......... .......... .......... .......... 250 CAACACTATC AAGCCATGCA TCCTGTACAC TTACTAAGAT CAGGAAAAGA TGCAAGGAAT 15693 .......... .......... .......... .......... .......... .......... 250 GGGGCCTGGG GTAGAAAATG TTTGATGTAA GACTAGCACC TTTATCTCAT TTTCATTTAA 15753 .......... .......... .......... .......... .......... .......... 250 ATATTCAACA TAGTTTCCTG ATGCATCAAA ATAACCTTCT TCTCTCTCTT TATTCAGATT 15813 .......... .......... .......... .......... .......... .......... 250 AAAAGGTTCT ATTGCAATCC CATCATCAAT GAATGTTTCA TTTTCCTGCA ACCAGAGATA 15873 .......... .......... .......... .......... .......... .......... 250 TTCCATTAGT TACACCAGAA AGGAATACAA GAAATACAAA GTTTAGCCAT AGAGCAATTA 15933 .......... .......... .......... .......... .......... .......... 250 GAATATGCAA AATTTGACAT TAATGATAAT TCCAAGTACT TCAGTTTGTT TATAGGCTGG 15993 .......... .......... .......... .......... .......... .......... 250 AGAGCCGAAC CAAAGAACAA ATAACAATAT AATTCCACGA ATTTAATGTG ACAGCACATG 16053 .......... .......... .......... .......... .......... .......... 250 AAGCAGAAAT AATGAAATTT AATTAACATT TATGTTTTGA GAGTTTAAGT AAAAGAAATA 16113 .......... .......... .......... .......... .......... .......... 250 AAATGCTCGG AAAATAAAAC AGAAGGAAAC AAAGGAAGTA AAGCTACAAA TTTTATTTCC 16173 .......... .......... .......... .......... .......... .......... 250 ATTGTTTCAT TGGCGAGGGA ATTATGAAGA ACAGGAAAAA TTTATTCAAG GGAACTCAGA 16233 | || ||| .......... .......... .......... .......... .......... .GCTCTTAGA 259 TAAATTCTTT TCTTCTTTGT AATCCTATTC TCATCTCTAT GCAAATTAAA GTACGTGCAG 16293 ||| ||| | |||||| -CAATAATTT T-TTCTTT.. .......... .......... .......... .......... 275 AATTTAAATC TTACCCATTT TCTATTTGTA AAGTTCAAAA ACCCACAGTT CATAAAGTCC 16353 .......... .......... .......... .......... .......... .......... 275 AAGGAAGAAC TCTACATAAG ATAGAATGAG ACAAGCCTAT TGGACACAGA AACAACGATT 16413 .......... .......... .......... .......... .......... .......... 275 CATGCTCAGT GAATTTAAAA GTGAAAAGTG CAAAAAAAGC GTCTGCGAGG CTTGAAATGA 16473 .......... .......... .......... .......... .......... .......... 275 ATAGGAGAGA AGTAAGGCAC ATGCTTTATT AAGTGAAGCG CACAATTATT TGATGATGAT 16533 .......... .......... .......... .......... .......... .......... 275 TCCTTTACAC ATGGCATGCA ACCTTATGCT ATTCCTTTTG ATGAGCCGCT ATATGCTAAG 16593 .......... .......... .......... .......... .......... .......... 275 AAAAAACACC ATTCTGTCTC CTTGACCTTT GTTTCAAGAG CATAAGGATT GATATGTATT 16653 .......... .......... .......... .......... .......... .......... 275 AGTGGGGTTT TTAAAATGAA GTTACAGATG GTCCCTATTT TGCTTACGTT ACTACTTACT 16713 .......... .......... .......... .......... .......... .......... 275 ACTTGGGGAA TATAATTAGC AATCATGATT ATTTATGGTT TTCAATTGTG CATGAGTACC 16773 .......... .......... .......... .......... .......... .......... 275 CATATCTCAG CTCTTTTAAA GAAGATTACC CATATCTAAG TTGTTCTAGC TAAACACGCA 16833 .......... .......... .......... .......... .......... .......... 275 GCACAAATCA TGCCAAGCCC CAAAAAAGTT TGTAATAATC CTAGTATCAC TTCCTTATCA 16893 .......... .......... .......... .......... .......... .......... 275 AGAGATATGA AGTAGACATC AGATATCCAC AAAGTACCTA ACTACAATCA AACAATTATG 16953 .......... .......... .......... .......... .......... .......... 275 GAATAACAGA TATTGGAAGG ACAAACCTCA TATTCCACTT CTGCCCGCGA TATGTCAGCT 17013 .......... .......... .......... .......... .......... .......... 275 ATTTCACCTT CGTTTTCTTC ATCAAGGAGT TCCGCTGTTA TTTGATTCCG CCGTGCCGAA 17073 .......... .......... .......... .......... .......... .......... 275 CGCTCTTTGG CTGCATTGCG AGGATCTGTC CGCCCACTAG GTTTATCTTC ACACCCATCA 17133 .......... .......... .......... .......... .......... .......... 275 ATCGTGGTAT CGCCCTGCTT TGCCTTCTTA CCCTTTGGGA ACCTTACACG CTTCTGCCTG 17193 .......... .......... .......... .......... .......... .......... 275 TGATGTTGAG GAAGAAAGCA ACATGTCAAT GCAAACATCC TTAAAATCCA GCATCATAAA 17253 .......... .......... .......... .......... .......... .......... 275 TGAAACTATT TTGAACCCAA CAAATGAGGT TGTCATAGAG CATGGCAGAC GTCACATGGA 17313 .......... .......... .......... .......... .......... .......... 275 AAAAAAAAAC GCTATTTGAA GTTGTATTAC TTGCTATTGC TGTCTCATGA AACACATTAT 17373 .......... .......... .......... .......... .......... .......... 275 CTTTACAAGG AAAATAACAG TAGGTAAAAA AGATCTATTT TTTCTCGTAC TAAACTCATG 17433 .......... .......... .......... .......... .......... .......... 275 ACAGTCTCAA CAACAAAATA CAACCTCTAA TCTGAAAAAG AAAGCAGTCT ACTTTATCTT 17493 .......... .......... .......... .......... .......... .......... 275 CAAAGACAAA CTATTGAGCA CTGGAATGAA ATGATCACAG TTAGAGTAAA TAGATATAGA 17553 .......... .......... .......... .......... .......... .......... 275 GATTACATAT AACTAATCCA ATTAGTTTGG GCATGAGGCA TAGTCACTGT ATAATTCCTT 17613 .......... .......... .......... .......... .......... .......... 275 AAATCTCCAA CAAATAAAGT ATTTTCTTGC ATAGTTCTCT CAAGGCCAAA CACACCCTTC 17673 .......... .......... .......... .......... .......... .......... 275 TTTATTAGAC ATTTTCTAGG TACTAAGAAT ACACAATCCA CCCATTCCCA CTAGATTTTT 17733 .......... .......... .......... .......... .......... .......... 275 GCTCCAGGTT CACATCATAT ATGAAATCAA CGGTAATTCA GATTAGGAAA AAACAAGCTA 17793 .......... .......... .......... .......... .......... .......... 275 ATAGAATCTG GGCGCATTTG CAGAATAACA AAAATAGATA GCAGCTGAAA GAAAGCAAAT 17853 .......... .......... .......... .......... .......... .......... 275 CCAAGTACAT ACTCCTGAAC TCCTCTGGGA AGCTCCTAAA ATTCTTACAA TAATGACATA 17913 .......... .......... .......... .......... .......... .......... 275 ATAAATCAAT CCCAGCAGAA GCAAAAAATA CTATGTGTAT TCTCCCTATC TATTTAAGCC 17973 .......... .......... .......... .......... .......... .......... 275 TCAATTGACA CAGTAAAGTG ATATCTATGT GGATGGGAGG TAGTAGAGAT CCCATAGGAT 18033 .......... .......... .......... .......... .......... .......... 275 AGAATTAATT GAGTTATAAA AACAAAAATG AGCTTCCTTA CTTATTTATC TATTTTTATC 18093 .......... .......... .......... .......... .......... .......... 275 TTTCTATTGA TACAAAATAC TCCCCCTAGT TCACTTCTTT CGTTTTTTAG ACAACTGTAG 18153 .......... .......... .......... .......... .......... .......... 275 TTACTAGACC AGCTTATGCG CACCTTAACT AATTACATAG ATATCTGTCG CTCCCCACCA 18213 .......... .......... .......... .......... .......... .......... 275 AAACAGCTAT AAAGTAACTC TATCCTCAAG GCTAGGACAG GTAGAAAGAA ATCACTTTTC 18273 .......... .......... .......... .......... .......... .......... 275 TTCTCTATGT TGGAATTTGA ACCTTAGACC TCATGGTTCT CAACTCACTT CATTAACCAC 18333 .......... .......... .......... .......... .......... .......... 275 TAGATCACAC CCTTCCTTAT TCACTTTTTT ATGAAATCAA TGTCATTAAA TTTCAATGGT 18393 .......... .......... .......... .......... .......... .......... 275 AAAATAAATT GGTTTCCTTT CGCATTATGT TTTTATTATG ATTGTGGTGT TCACGCCAGT 18453 .......... .......... .......... .......... .......... .......... 275 TTTCCCACAC CTCAACTAAT TCCACCTCTC ACCATTAACA ACTATCAGGT AACTCTGTCC 18513 .......... .......... .......... .......... .......... .......... 275 ACCAAAACTA GGACAAATAG AAAAAAATCA TCTAGCATTT TTGTCTCTAC TAGAAATTGA 18573 .......... .......... .......... .......... .......... .......... 275 ACATTAGACC TCATGATGCT CAACCCACCT CCCTTGACCA CTAAGCCACA CCCTTTGAGA 18633 .......... .......... .......... .......... .......... .......... 275 AGTTTTTTGT TAATTTTAAT GACCTTGGTA TCCAAATACA TTGGATACGT CCCACCTCCC 18693 .......... .......... .......... .......... .......... .......... 275 ACCAAATAAC TTTGTTGTCT TCCCTGAGTT TTATAAGACC TCAGAATTCT CAACCACTTC 18753 .......... .......... .......... .......... .......... .......... 275 ATTAATCACT AAGCCACACC CTTGGGGTTT CACCACTATG TTTCAAACAT ATACAAAATA 18813 .......... .......... .......... .......... .......... .......... 275 TTATTTACTA AGAAATCACA AACTTACAGC TCAAATTTTA TATTCCGAAA TCAATATAAC 18873 .......... .......... .......... .......... .......... .......... 275 AAATGAATAT GAGCTTTCAT CTGTGCAGAA TCCCTAAGTA TGTTCAGAAT AAATTAGGGC 18933 .......... .......... .......... .......... .......... .......... 275 ACAAAATCAC ATGAAATTTT TCAAAAATAA AAAATAAAAA GAAAGAAGGA AGGAAATAGT 18993 .......... .......... .......... .......... .......... .......... 275 TACTCTGGAG CTTTATTGGA GTCATCGTCC TCAACGAAGG GACGTTTGGC ACGTCGCGAT 19053 .......... .......... .......... .......... .......... .......... 275 GAACCTTCTT CCATGGCGTA ATCGGCAATT GATATGAAGG ATTCAGAAAG GAAAAAAAAT 19113 .......... .......... .......... .......... .......... .......... 275 GAAGGGGCAA AGTGAAGAGA GAGCGGTGGT ACTGGTAAAC ATCAAAAAAA ATAATAATAA 19173 .......... .......... .......... .......... .......... .......... 275 TAAATTCTAT CTTACAAACT ATAATACCTT TTTTAAATTG ATAAATATCT AAAATTAACA 19233 .......... .......... .......... .......... .......... .......... 275 TTACCAATAT TAATCTTATT GGATAAATTC AAATAAGTTA TTGATAATAT AGAAAAATAA 19293 .......... .......... .......... .......... .......... .......... 275 TATTATAAAT TATTAGTTGA GAAATGTGAC AACACAAAAA ATATACTAAT AGCTGAGATA 19353 .......... .......... .......... .......... .......... .......... 275 ATTTGTAAAA TAAAATTATC ATTTTACTTT ATTATGGATA TTCATGTCTA CTAGTCATTT 19413 .......... .......... .......... .......... .......... .......... 275 TTATCATTAA TTAATATTTA GGATGATGAT TATTATTATT ATTATTATAT ATATATATAT 19473 .......... .......... .......... .......... .......... .......... 275 ATATATATAT ATATATATAT AAAAGAGATA AAAATGTAAG ATCAAATTGT TTCATAAATA 19533 .......... .......... .......... .......... .......... .......... 275 TATAGAATAA ATTACAATTT ACAAATATTA ATATTTTTTT AATTTAATCA CTCTGTCACA 19593 .......... .......... .......... .......... .......... .......... 275 GTTTTGCATA GATAAAAATG ATCGATAAAT TATTTCGTTC GACATTTGCA CAAGGATTTT 19653 .......... .......... .......... .......... .......... .......... 275 ACTTTTATAA AAATGATATT TCAAAAAAAT TGTATAACTA ATTATTTTCA TAAATAAATT 19713 .......... .......... .......... .......... .......... .......... 275 ACTTATGTTG AATAGTTTAA TTTGGTTATT AGTTCACTAA CTCCTTGTTA TAAAGATACA 19773 .......... .......... .......... .......... .......... .......... 275 ATTTATTTCA TTTTAATGGT ATTATTGAAT AAGTAGTATT ATAGGATTGT TTTGGTATTT 19833 .......... .......... .......... .......... .......... .......... 275 CAATTTTTAT TTTTTTTTTG TTTAACTCAA TATTATAGGA TTATTTGGTA TTTCAAATAT 19893 .......... .......... .......... .......... .......... .......... 275 AATTTTTTGT TTAAGTCAAT ATTCAAATTT TGTGTATAAA AAGTACATAA ATTTGGTATA 19953 .......... .......... .......... .......... .......... .......... 275 AAATATGTAT ATAACTATAT AAAATTTGTA TGAAGCTCAT GTTAGATACT ATTGCATACA 20013 .......... .......... .......... .......... .......... .......... 275 ACATTCATAT CAAACTAAAT ACAACTACAA TACCAACAAA TGATATGTTG CAGTAGATGA 20073 .......... .......... .......... .......... .......... .......... 275 GTTACTCCTG TCGGGTTTCA GATTCGAATC ATCA 20107 | || ||| || .......... .......... .-TACGTATC TCCA 287 hqPGS_C04HBa0127E11.1+_SGN-E237992+ (14917 15165,16225 16251) ******************************************************************************** EST sequence 3 +strand 528 n (File: SGN-E242674+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATCTCCACT TAAATACC Predicted gene structure (within gDNA segment 13794 to 18770): Exon 1 14916 15164 ( 249 n); cDNA 1 250 ( 250 n); score: 0.894 MATCH C04HBa0127E11.1+ SGN-E242674+ 0.894 249 0.472 C PGS_C04HBa0127E11.1+_SGN-E242674+ (14916 15164) Alignment (genomic DNA sequence = upper lines): GATGTTAGGA TTATGTGGGT AATTTGAAGA TTGTATAAAA ATATTAAGGG CAAACAGGTA 14975 |||||||| |||||||| | |||||| ||| |||||||||| |||||||||| |||| || || GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTGGGGAAA AAAAGCACCC CTACCCCAGC 15035 |||||||||| |||||||||| |||||||||| ||| ||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGACTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGTT GTTTTGAGTA 15092 |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| ||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGTCAAACA GCTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTGACC AGCTTTTAAG 15152 ||| |||||| ||||||||| ||||||| || | |||||||| |||||||| | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CA 15164 |||| | ||| || CTGAACTAAA CA 250 hqPGS_C04HBa0127E11.1+_SGN-E242674+ (14916 15164) ******************************************************************************** EST sequence 13 +strand 643 n (File: SGN-E233074+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATCTCCACT TAAATACCAG ACATCACTAA 541 CTTAAGTCAC AAACCCCTTG ACCTTCCCAA TTATATTTAA GCACTAGAAA ACTTATATAT 601 AAAAAATCGA ATTTAACGCT TAATATTTAT CAACTAACAC CTA Predicted gene structure (within gDNA segment 13794 to 19920): Exon 1 14916 15164 ( 249 n); cDNA 1 250 ( 250 n); score: 0.894 MATCH C04HBa0127E11.1+ SGN-E233074+ 0.894 249 0.387 C PGS_C04HBa0127E11.1+_SGN-E233074+ (14916 15164) Alignment (genomic DNA sequence = upper lines): GATGTTAGGA TTATGTGGGT AATTTGAAGA TTGTATAAAA ATATTAAGGG CAAACAGGTA 14975 |||||||| |||||||| | |||||| ||| |||||||||| |||||||||| |||| || || GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTGGGGAAA AAAAGCACCC CTACCCCAGC 15035 |||||||||| |||||||||| |||||||||| ||| ||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGACTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGTT GTTTTGAGTA 15092 |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| ||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGTCAAACA GCTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTGACC AGCTTTTAAG 15152 ||| |||||| ||||||||| ||||||| || | |||||||| |||||||| | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CA 15164 |||| | ||| || CTGAACTAAA CA 250 hqPGS_C04HBa0127E11.1+_SGN-E233074+ (14916 15164) ******************************************************************************** EST sequence 35 +strand 310 n (File: SGN-E233594+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG Predicted gene structure (within gDNA segment 13794 to 16590): Exon 1 14916 15164 ( 249 n); cDNA 1 250 ( 250 n); score: 0.894 MATCH C04HBa0127E11.1+ SGN-E233594+ 0.894 249 0.803 C PGS_C04HBa0127E11.1+_SGN-E233594+ (14916 15164) Alignment (genomic DNA sequence = upper lines): GATGTTAGGA TTATGTGGGT AATTTGAAGA TTGTATAAAA ATATTAAGGG CAAACAGGTA 14975 |||||||| |||||||| | |||||| ||| |||||||||| |||||||||| |||| || || GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTGGGGAAA AAAAGCACCC CTACCCCAGC 15035 |||||||||| |||||||||| |||||||||| ||| ||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGACTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGTT GTTTTGAGTA 15092 |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| ||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGTCAAACA GCTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTGACC AGCTTTTAAG 15152 ||| |||||| ||||||||| ||||||| || | |||||||| |||||||| | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CA 15164 |||| | ||| || CTGAACTAAA CA 250 hqPGS_C04HBa0127E11.1+_SGN-E233594+ (14916 15164) ******************************************************************************** EST sequence 36 +strand 514 n (File: SGN-E233735+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATC Predicted gene structure (within gDNA segment 13794 to 18630): Exon 1 14916 15164 ( 249 n); cDNA 1 250 ( 250 n); score: 0.894 MATCH C04HBa0127E11.1+ SGN-E233735+ 0.894 249 0.484 C PGS_C04HBa0127E11.1+_SGN-E233735+ (14916 15164) Alignment (genomic DNA sequence = upper lines): GATGTTAGGA TTATGTGGGT AATTTGAAGA TTGTATAAAA ATATTAAGGG CAAACAGGTA 14975 |||||||| |||||||| | |||||| ||| |||||||||| |||||||||| |||| || || GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTGGGGAAA AAAAGCACCC CTACCCCAGC 15035 |||||||||| |||||||||| |||||||||| ||| ||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGACTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGTT GTTTTGAGTA 15092 |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| ||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGTCAAACA GCTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTGACC AGCTTTTAAG 15152 ||| |||||| ||||||||| ||||||| || | |||||||| |||||||| | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CA 15164 |||| | ||| || CTGAACTAAA CA 250 hqPGS_C04HBa0127E11.1+_SGN-E233735+ (14916 15164) ******************************************************************************** EST sequence 37 +strand 484 n (File: SGN-E377238+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACAC Predicted gene structure (within gDNA segment 13794 to 18330): Exon 1 14916 15164 ( 249 n); cDNA 1 250 ( 250 n); score: 0.894 MATCH C04HBa0127E11.1+ SGN-E377238+ 0.894 249 0.514 C PGS_C04HBa0127E11.1+_SGN-E377238+ (14916 15164) Alignment (genomic DNA sequence = upper lines): GATGTTAGGA TTATGTGGGT AATTTGAAGA TTGTATAAAA ATATTAAGGG CAAACAGGTA 14975 |||||||| |||||||| | |||||| ||| |||||||||| |||||||||| |||| || || GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTGGGGAAA AAAAGCACCC CTACCCCAGC 15035 |||||||||| |||||||||| |||||||||| ||| ||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGACTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGTT GTTTTGAGTA 15092 |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| ||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGTCAAACA GCTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTGACC AGCTTTTAAG 15152 ||| |||||| ||||||||| ||||||| || | |||||||| |||||||| | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CA 15164 |||| | ||| || CTGAACTAAA CA 250 hqPGS_C04HBa0127E11.1+_SGN-E377238+ (14916 15164) ******************************************************************************** EST sequence 49 +strand 434 n (File: SGN-E240879+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAAT Predicted gene structure (within gDNA segment 13794 to 17830): Exon 1 14916 15164 ( 249 n); cDNA 1 250 ( 250 n); score: 0.894 MATCH C04HBa0127E11.1+ SGN-E240879+ 0.894 249 0.574 C PGS_C04HBa0127E11.1+_SGN-E240879+ (14916 15164) Alignment (genomic DNA sequence = upper lines): GATGTTAGGA TTATGTGGGT AATTTGAAGA TTGTATAAAA ATATTAAGGG CAAACAGGTA 14975 |||||||| |||||||| | |||||| ||| |||||||||| |||||||||| |||| || || GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTGGGGAAA AAAAGCACCC CTACCCCAGC 15035 |||||||||| |||||||||| |||||||||| ||| ||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGACTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGTT GTTTTGAGTA 15092 |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| ||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGTCAAACA GCTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTGACC AGCTTTTAAG 15152 ||| |||||| ||||||||| ||||||| || | |||||||| |||||||| | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CA 15164 |||| | ||| || CTGAACTAAA CA 250 hqPGS_C04HBa0127E11.1+_SGN-E240879+ (14916 15164) ******************************************************************************** EST sequence 39 +strand 748 n (File: SGN-E544203+) 1 TTTTTTTTTT TTTTTTTTTT TTAAAAAGGT AAAAATGTGG TCAACTTAAA ATAGTTTATA 61 AGTTGAAAAA AAGAAGCACT CTTACCCCAG CTTTTAACTT TTGGCTTAAA ATAAGTTTTT 121 TTTAAAACTT AAAATAAGTT ATTTTGAGGA TTGCCAAACA ACTAAATAAG TCAAAAATTA 181 GCTTTTAAGT TAGTTTGACC AGCTTTTAAG CTGAACCAAA CAAGTTCTTT ATCTCCTACT 241 TCTGCCTTTT GTATATCTTT GCCAAGAATG ACTTCAGAAC TGCTTGCACT GCTTTGCTTG 301 GTTGAGCTTC AATGGAGTTG ATCAGCTTTT CATATGTACT CCTCTCATAT TCCAGGTACA 361 CATCCTCAAG TTTGAGATCA TTGTAGAGCG CCTTTACTTT AGCAACACAA GCAGGGTCAT 421 CTTTTCCATA GTTTTCATGT AATAACTTTT TTTGCTCATC ATTGCAGTGT TCTAGGGCTT 481 TCACTACCAA CCAAGAGCAC TTGAAATCTT GAATATCCGT GCCAATCTTA CCCAATACCT 541 CTGGATCAGC AAAGCAGTCC AAGTAATCAT CCTGAACTTG GAAATATATT CCCATTTCGA 601 GTAGTATGTT CTTGACATTA ACATGATTGT CAAGATTCTC TCCTGCCATA AGAAGTGCAC 661 ATGCCACTGG GAGATAAAAT GAATAATAAG CAGTTTTATA CTGGACAATC CGCCTATGAA 721 TAGGCAACGA GTATTTTGAT AAATCTTT Predicted gene structure (within gDNA segment 13607 to 21106): Exon 1 14973 15164 ( 192 n); cDNA 29 222 ( 194 n); score: 0.880 PPA cDNA 22 1 MATCH C04HBa0127E11.1+ SGN-E544203+ 0.880 192 0.257 C PGS_C04HBa0127E11.1+_SGN-E544203+ (14973 15164) Alignment (genomic DNA sequence = upper lines): GTAAAAATGT GGTCAACTTA AAACAGCTTA TAAGCTGGGG AAAAAAAGCA CCCCTACCCC 15032 |||||||||| |||||||||| ||| || ||| |||| || |||| ||||| | | |||||| GTAAAAATGT GGTCAACTTA AAATAGTTTA TAAGTTGAAA AAAAGAAGCA CTCTTACCCC 88 AGCTTTTAAC TTTTGACTTA AAATAAGTTT TTTTT--AAC TTAAAATAAG TTGTTTTGAG 15090 |||||||||| ||||| |||| |||||||||| ||||| ||| |||||||||| || ||||||| AGCTTTTAAC TTTTGGCTTA AAATAAGTTT TTTTTAAAAC TTAAAATAAG TTATTTTGAG 148 TATTGTCAAA CAGCTAAATA AGTCAAAAAC CAGCTTTTAA GTCAGTTTGA CCAGCTTTTA 15150 |||| |||| || ||||||| ||||||||| ||||||||| || ||||||| |||||||||| GATTGCCAAA CAACTAAATA AGTCAAAAAT TAGCTTTTAA GTTAGTTTGA CCAGCTTTTA 208 AGCTGAGCCA AACA 15164 |||||| ||| |||| AGCTGAACCA AACA 222 hqPGS_C04HBa0127E11.1+_SGN-E544203+ (14973 15164) ******************************************************************************** EST sequence 26 +strand 662 n (File: SGN-E376754+) 1 TTTTTTTTTA AAATAAGTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA TTGTCAAACA 61 GCTAAATAAG TCAAAAACCA GCTTTTTAAG TCAGTTTGAC CAGTTTTTAA GCTGAGCCAA 121 ACAGGCTCTA AGAGGATCAA AGAAAGTACA CAAACTTAAA GAAAATAAGT AGAGATCACA 181 CCACTCATAC AATAAAACAT TACATTCAAT GAAGGTTCAA TACATCGAGA TGGTAAGACT 241 AACATTATAC TAGACAAGAG CCTACCCAAT GAATTATTTT TGGATTTTTT CACATTTTTG 301 ACAAGTCTAA ACTTCAAATG TAACAAGAGG ATAATGGAAT TACTTGGCCA TCATGACCTT 361 AACAAACTCC TCATAGTTGA TTTGTCCATC ACCATCAACA TCAGCTTCCC TAATCATCTC 421 ATCGACTTCT TCATCAGTAA GCTTCTCTCC AAGGTTAGTC ATCACATGAC GAAGCTCAGC 481 AGCGGAGATG AAGCCATTTT GATCCTTGTC GAAAACTCTG AATGCCTCTT TCAACTCCTC 541 CTCAGAGTCA GTATCCTTCA TCTTCCTGGC CATAAGGTTT AGAAACTCTG GGAAGTCGAT 601 GGTTCCATTA CCATCTGCAT CCACCTCGTT TATCATGTCC TGGAGCTCAG CTTTAGTAGG 661 GT Predicted gene structure (within gDNA segment 14380 to 21092): Exon 1 15043 15172 ( 130 n); cDNA 1 131 ( 131 n); score: 0.942 Intron 1 15173 15400 ( 228 n); Pd: 0.000 (s: 0.93), Pa: 0.000 (s: 0) Exon 2 15401 15423 ( 23 n); cDNA 132 153 ( 22 n); score: 0.652 Intron 2 15424 15810 ( 387 n); Pd: 0.395 (s: 0), Pa: 0.672 (s: 0) Exon 3 15811 15818 ( 8 n); cDNA 154 161 ( 8 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-E376754+ 0.942 161 0.243 C PGS_C04HBa0127E11.1+_SGN-E376754+ (15043 15172,15401 15423,15811 15818) Alignment (genomic DNA sequence = upper lines): TTTTGACTTA AAATAAGTTT TTTTTAACTT AAAATAAGTT GTTTTGAGTA TTGTCAAACA 15102 |||| ||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTTTTTTTTA AAATAAGTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA TTGTCAAACA 60 GCTAAATAAG TCAAAAACCA GCT-TTTAAG TCAGTTTGAC CAGCTTTTAA GCTGAGCCAA 15161 |||||||||| |||||||||| ||| |||||| |||||||||| ||| |||||| |||||||||| GCTAAATAAG TCAAAAACCA GCTTTTTAAG TCAGTTTGAC CAGTTTTTAA GCTGAGCCAA 120 ACAGGCTCTA AATCTTAACA GCTCAACCAT AGCCTCTCCA TTTCTCATTT GAAAACAACA 15221 |||||||||| | ACAGGCTCTA A......... .......... .......... .......... .......... 131 GCAAAAAGCC ACAAAGAACT TTGCTTGGAC AATGAAGAAA ATATAATATG CAAGCAACAG 15281 .......... .......... .......... .......... .......... .......... 131 CAAACACAGT ATCAATATGC AACCATTAGT ACGAGATAAT ACATGAGGGA AAAGCAGATA 15341 .......... .......... .......... .......... .......... .......... 131 AGATTCATGT TGAAACCACC ACTGAAGGAA CCAGAAATGA GAGCACATAA AATATTTAGA 15401 .......... .......... .......... .......... .......... .........G 132 AGATATTAAA AAAAATCTAC AAGCAAATGC CATCAACAGT ATTTATCCAT TAAAAAAAAT 15461 || || ||| ||| | || || AGG-ATCAAA GAAAGTACAC AA........ .......... .......... .......... 153 TAACAAAAAA AAACTAGAAA ACACGAGGTG GGAATAGTTA CTGTTTCTCC TGGTTCGAGC 15521 .......... .......... .......... .......... .......... .......... 153 ACATCAGCAA TTCGCCTCTT CATCTTTCCT AGTTGTTCTG ATGTAAGGTC TTGAATCTCA 15581 .......... .......... .......... .......... .......... .......... 153 TCTTCATTTG ATATCTTGAT AGCTTTCTTC CCAGAATATG TTTTCTCAGT ATCAACACTA 15641 .......... .......... .......... .......... .......... .......... 153 TCAAGCCATG CATCCTGTAC ACTTACTAAG ATCAGGAAAA GATGCAAGGA ATGGGGCCTG 15701 .......... .......... .......... .......... .......... .......... 153 GGGTAGAAAA TGTTTGATGT AAGACTAGCA CCTTTATCTC ATTTTCATTT AAATATTCAA 15761 .......... .......... .......... .......... .......... .......... 153 CATAGTTTCC TGATGCATCA AAATAACCTT CTTCTCTCTC TTTATTCAGA TTAAAAG 15818 | | |||| .......... .......... .......... .......... .........A CTTAAAG 161 hqPGS_C04HBa0127E11.1+_SGN-E376754+ (15043 15172) ******************************************************************************** EST sequence 10 +strand 385 n (File: SGN-E217478+) 1 TTTTTTTTTT TTTTTGTTGG GGCTTAAAAT AAGTTTTTTT TAACTTAAAA TAAACCATTT 61 TGAGTATTGT CAAACAGTTA AATAAGTTAA AAAAAACTAT TTTGAGTATT GCCAAACAGT 121 TAAATAAGTC AAAAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAAGTA TCTCTGCTTA 181 AAATAACTGT GACATCTTTG CTTTTCTGGG AGTTTGAAAC CCAAAATCAG GTATCCTCAG 241 TCCTTTATCT GCCAATTGAT GCTAGTCAAG AAGACTTCAT GAATTTTCAG CATCCATCCG 301 TTCAATCACA CGACGTGCTT CTTCCTCTGT ACCAGGGACG ACATTCCTAA CTCGTGCACC 361 ATTTTTCAGT GAATCTTGTT GGACA Predicted gene structure (within gDNA segment 14229 to 18562): Exon 1 15067 15130 ( 64 n); cDNA 83 146 ( 64 n); score: 0.891 PPA cDNA 18 1 MATCH C04HBa0127E11.1+ SGN-E217478+ 0.891 64 0.166 C PGS_C04HBa0127E11.1+_SGN-E217478+ (15067 15130) Alignment (genomic DNA sequence = upper lines): TAACTTAAAA TAAGTTGTTT TGAGTATTGT CAAACAGCTA AATAAGTCAA AAACCAGCTT 15126 ||| |||||| || | ||| ||||||||| ||||||| || |||||||||| |||||||||| TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 142 TTAA 15130 |||| TTAA 146 hqPGS_C04HBa0127E11.1+_SGN-E217478+ (15067 15130) ******************************************************************************** EST sequence 22 +strand 468 n (File: SGN-E228654+) 1 TTTTTTTTTT TTTTTTTTTG GGCTTAAAAT AAGTTTTTTT TAACTTAAAA TAAACCATTT 61 TGAGTATTGT CAAACAGTTA AATAAGTTAA AAAAAACTAT TTTGAGTATT GCCAAACAGT 121 TAAATAAGTC AAAAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAAGTA TCTCTGCTTA 181 AAATAACTGG GACATCTTTG CTTTTCTGGG AGTTTGAAAC CCAAAATCAG GTATCCTCAG 241 TCCTTTATCT GCCAATTGAT GCTAGTCAAG AAGACTTCAT GAATTTTCAG CATCCATCCG 301 TTCAATCACA CGACGTGCTT CTTCCTCTGT ACCAGGGACG ACATTCCTAA CTCGTGCACC 361 ATTTTTCAGT GAATCTTGTT GGACAGTGAA AGTGAAATAG AAATTGTTTG AAACCTCGCT 421 AGACCGCAAC TCAGGTCTCA TGACATGAGC TACCACTTCT ACATTGAT Predicted gene structure (within gDNA segment 14229 to 18792): Exon 1 15067 15130 ( 64 n); cDNA 83 146 ( 64 n); score: 0.891 PPA cDNA 19 1 MATCH C04HBa0127E11.1+ SGN-E228654+ 0.891 64 0.137 C PGS_C04HBa0127E11.1+_SGN-E228654+ (15067 15130) Alignment (genomic DNA sequence = upper lines): TAACTTAAAA TAAGTTGTTT TGAGTATTGT CAAACAGCTA AATAAGTCAA AAACCAGCTT 15126 ||| |||||| || | ||| ||||||||| ||||||| || |||||||||| |||||||||| TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 142 TTAA 15130 |||| TTAA 146 hqPGS_C04HBa0127E11.1+_SGN-E228654+ (15067 15130) ******************************************************************************** EST sequence 23 +strand 397 n (File: SGN-E229134+) 1 TTTTTTTTTT TTTTTTTTTT GGCTTAAAAT AAGTTTTTTT TAACTTAAAA TAAACCATTT 61 TGAGTATTGT CAAACAGTTA AATAAGTTAA AAAAAACTAT TTTGAGTATT GCCAAACAGT 121 TAAATAAGTC AAAAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAAGTA TCTCTGCTTA 181 AAATAACTGT GACATCTTTG CTTTTCTGGG AGTTTGAAAC CCAAAATCAG GTATCCTCAG 241 TCCTTTATCT GCCAATTGAT GCTAGTCAAG AAGACTTCAT GAATTTTCAG CATCCATCCG 301 TTCAATCACA CGACGTGCTT CTTCCTCTGT ACCAGGGACG ACATTCCTAA CTCGTGCACC 361 ATTTTTTCAG TGAATCTTGT TGGACAGTGA AAGTGAA Predicted gene structure (within gDNA segment 14229 to 18682): Exon 1 15067 15130 ( 64 n); cDNA 83 146 ( 64 n); score: 0.891 PPA cDNA 20 1 MATCH C04HBa0127E11.1+ SGN-E229134+ 0.891 64 0.161 C PGS_C04HBa0127E11.1+_SGN-E229134+ (15067 15130) Alignment (genomic DNA sequence = upper lines): TAACTTAAAA TAAGTTGTTT TGAGTATTGT CAAACAGCTA AATAAGTCAA AAACCAGCTT 15126 ||| |||||| || | ||| ||||||||| ||||||| || |||||||||| |||||||||| TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 142 TTAA 15130 |||| TTAA 146 hqPGS_C04HBa0127E11.1+_SGN-E229134+ (15067 15130) ******************************************************************************** EST sequence 54 -strand 387 n (File: SGN-E577960-) 1 AACTTAAAAT AAGCTGTTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA AACCAGCTTT 61 TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAGTTGC TCAAAAGTGG 121 TTTTTGGAGC CTTTGGGAGC TTCGAGTGTC GGAATAAAGT TCCATCAATA CCATCAGTAC 181 CGGAATGTGG AATCTGAGTT GTGAGAGTTG TTCGTTTCGT ATTCTGAGTC TTTTTGAGGA 241 TTTGAGGTCC TAAGTTGTGA AATTGTGGGC TTTTGGGTTG ACTTTGGTGA ACATTCGGGG 301 TTTGGATGCT CGGCTCAGAA TTTCCGAGTG TTTTGTTGAA TTTGGGGGAT GATTTTTGAG 361 AGGTTTCGAG CTTGTTTTAC ACTTTTG Predicted gene structure (within gDNA segment 14125 to 18592): Exon 1 15068 15176 ( 109 n); cDNA 1 109 ( 109 n); score: 0.945 Intron 1 15177 15810 ( 634 n); Pd: 0.000 (s: 0.94), Pa: 0.672 (s: 0) Exon 2 15811 15818 ( 8 n); cDNA 110 117 ( 8 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-E577960- 0.945 117 0.302 C PGS_C04HBa0127E11.1+_SGN-E577960- (15068 15176,15811 15818) Alignment (genomic DNA sequence = upper lines): AACTTAAAAT AAGTTGTTTT GAGTATTGTC AAACAGCTAA ATAAGTCAAA AACCAGCTTT 15127 |||||||||| ||| |||||| |||||||| | |||||| ||| |||||||||| |||||||||| AACTTAAAAT AAGCTGTTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA AACCAGCTTT 60 TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAATCTT AACAGCTCAA 15187 |||||||||| |||||||||| |||||||||| |||||||||| ||||| | TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAGTTG. .......... 109 CCATAGCCTC TCCATTTCTC ATTTGAAAAC AACAGCAAAA AGCCACAAAG AACTTTGCTT 15247 .......... .......... .......... .......... .......... .......... 109 GGACAATGAA GAAAATATAA TATGCAAGCA ACAGCAAACA CAGTATCAAT ATGCAACCAT 15307 .......... .......... .......... .......... .......... .......... 109 TAGTACGAGA TAATACATGA GGGAAAAGCA GATAAGATTC ATGTTGAAAC CACCACTGAA 15367 .......... .......... .......... .......... .......... .......... 109 GGAACCAGAA ATGAGAGCAC ATAAAATATT TAGAAGATAT TAAAAAAAAT CTACAAGCAA 15427 .......... .......... .......... .......... .......... .......... 109 ATGCCATCAA CAGTATTTAT CCATTAAAAA AAATTAACAA AAAAAAACTA GAAAACACGA 15487 .......... .......... .......... .......... .......... .......... 109 GGTGGGAATA GTTACTGTTT CTCCTGGTTC GAGCACATCA GCAATTCGCC TCTTCATCTT 15547 .......... .......... .......... .......... .......... .......... 109 TCCTAGTTGT TCTGATGTAA GGTCTTGAAT CTCATCTTCA TTTGATATCT TGATAGCTTT 15607 .......... .......... .......... .......... .......... .......... 109 CTTCCCAGAA TATGTTTTCT CAGTATCAAC ACTATCAAGC CATGCATCCT GTACACTTAC 15667 .......... .......... .......... .......... .......... .......... 109 TAAGATCAGG AAAAGATGCA AGGAATGGGG CCTGGGGTAG AAAATGTTTG ATGTAAGACT 15727 .......... .......... .......... .......... .......... .......... 109 AGCACCTTTA TCTCATTTTC ATTTAAATAT TCAACATAGT TTCCTGATGC ATCAAAATAA 15787 .......... .......... .......... .......... .......... .......... 109 CCTTCTTCTC TCTCTTTATT CAGATTAAAA G 15818 | |||| | .......... .......... ...CTCAAAA G 117 hqPGS_C04HBa0127E11.1+_SGN-E577960- (15068 15176) ******************************************************************************** EST sequence 134 -strand 430 n (File: SGN-E240526-) 1 GCTATTTTAA GTATTGTCAA ACAGTTAAAT AAGTTAAAAA CCAGCTTTTA AGTCAGTTTG 61 ACCAGCTTTT AAGCTGAGCC AAACAAGCTC TTAATTCTGT TTTTGTAGCC AACTAGAAGT 121 TTTTTACCTC TTGGTCCCAT TGCTATCATC CTGCATGTGT TTCTCCAGAA CTGGGCCAAC 181 TCCTAACAAT TTAGTCTGAT ATTGCATTAT TTTGTGGGCT GTCATCATGG GTCAATGGCC 241 TTGTCCACAA TTACACACTC TGACTATACT GATGGTGGTC AATCTCACTG ATCATTTGCT 301 TCACCACGCC CAAGACGGAG GATAAAATAC CAGTTCAATA GTTTTACAAG TTCAGTATAG 361 TACAATGAAT TAAGATTTAC TCGATACAAA GTAACGAAAT AATCCTACTA ATCAAACAAA 421 GTTGACTTGT Predicted gene structure (within gDNA segment 14155 to 19214): Exon 1 15084 15164 ( 81 n); cDNA 5 85 ( 81 n); score: 0.963 MATCH C04HBa0127E11.1+ SGN-E240526- 0.963 81 0.188 C PGS_C04HBa0127E11.1+_SGN-E240526- (15084 15164) Alignment (genomic DNA sequence = upper lines): TTTTGAGTAT TGTCAAACAG CTAAATAAGT CAAAAACCAG CTTTTAAGTC AGTTTGACCA 15143 |||| ||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| TTTTAAGTAT TGTCAAACAG TTAAATAAGT TAAAAACCAG CTTTTAAGTC AGTTTGACCA 64 GCTTTTAAGC TGAGCCAAAC A 15164 |||||||||| |||||||||| | GCTTTTAAGC TGAGCCAAAC A 85 hqPGS_C04HBa0127E11.1+_SGN-E240526- (15084 15164) ******************************************************************************** EST sequence 21 +strand 514 n (File: SGN-E256217+) 1 AAAAACCAGC TTTTAAGTCA GTTTGACCAG CTTTTAAGCT GAGCCAAACA GGCTCTTAAA 61 ATGTCTGCTT AGATGTGCTA TATATATTTG AGCTTTTTTT GAAGTAGTAT ATTATCCTTA 121 AGTTCAACAT AAAAATACAT GCTTTAACAT AGCACATATA GTTAATCAAA AGACGAAATG 181 ATGAATAATT TTGCGAATTT GATTATTCAC AAGAAAAGGG ATAGTTCAAA GTGTACATTT 241 CAAGTAATTG AAGATATCAT AAAGACTAAA ATTAGAAGAA CTAATAATTG AGGGATCAAA 301 AATGTTATTA CCTTATTAAA ATACTATTCC ATTTTCATAT TAAATTAACT AATTAAGAGT 361 GTTTTATAAT CTAATAAAAC ATGCAATAAT TATTGACGAA ATGTGGTTTT GGTACCTATA 421 ATCTTTCTGA ATATTTGCTC TTATTTTTTC TCTTTTTATT TTTCCATGGA TTAGTATTGG 481 AAGCTTAGGA TCTGGAAATT CAGAAGCTTA TGTG Predicted gene structure (within gDNA segment 14515 to 20360): Exon 1 15115 15168 ( 54 n); cDNA 1 54 ( 54 n); score: 1.000 Intron 1 15169 15810 ( 642 n); Pd: 0.000 (s: 1.00), Pa: 0.672 (s: 0) Exon 2 15811 15818 ( 8 n); cDNA 55 62 ( 8 n); score: 0.750 Intron 2 15819 19594 (3776 n); Pd: 0.743 (s: 0), Pa: 0.902 (s: 0) Exon 3 19595 19606 ( 12 n); cDNA 63 74 ( 12 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-E256217+ 1.000 74 0.144 C PGS_C04HBa0127E11.1+_SGN-E256217+ (15115 15168,15811 15818,19595 19606) Alignment (genomic DNA sequence = upper lines): AAAAACCAGC TTTTAAGTCA GTTTGACCAG CTTTTAAGCT GAGCCAAACA GGCTCTAAAT 15174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AAAAACCAGC TTTTAAGTCA GTTTGACCAG CTTTTAAGCT GAGCCAAACA GGCT...... 54 CTTAACAGCT CAACCATAGC CTCTCCATTT CTCATTTGAA AACAACAGCA AAAAGCCACA 15234 .......... .......... .......... .......... .......... .......... 54 AAGAACTTTG CTTGGACAAT GAAGAAAATA TAATATGCAA GCAACAGCAA ACACAGTATC 15294 .......... .......... .......... .......... .......... .......... 54 AATATGCAAC CATTAGTACG AGATAATACA TGAGGGAAAA GCAGATAAGA TTCATGTTGA 15354 .......... .......... .......... .......... .......... .......... 54 AACCACCACT GAAGGAACCA GAAATGAGAG CACATAAAAT ATTTAGAAGA TATTAAAAAA 15414 .......... .......... .......... .......... .......... .......... 54 AATCTACAAG CAAATGCCAT CAACAGTATT TATCCATTAA AAAAAATTAA CAAAAAAAAA 15474 .......... .......... .......... .......... .......... .......... 54 CTAGAAAACA CGAGGTGGGA ATAGTTACTG TTTCTCCTGG TTCGAGCACA TCAGCAATTC 15534 .......... .......... .......... .......... .......... .......... 54 GCCTCTTCAT CTTTCCTAGT TGTTCTGATG TAAGGTCTTG AATCTCATCT TCATTTGATA 15594 .......... .......... .......... .......... .......... .......... 54 TCTTGATAGC TTTCTTCCCA GAATATGTTT TCTCAGTATC AACACTATCA AGCCATGCAT 15654 .......... .......... .......... .......... .......... .......... 54 CCTGTACACT TACTAAGATC AGGAAAAGAT GCAAGGAATG GGGCCTGGGG TAGAAAATGT 15714 .......... .......... .......... .......... .......... .......... 54 TTGATGTAAG ACTAGCACCT TTATCTCATT TTCATTTAAA TATTCAACAT AGTTTCCTGA 15774 .......... .......... .......... .......... .......... .......... 54 TGCATCAAAA TAACCTTCTT CTCTCTCTTT ATTCAGATTA AAAGGTTCTA TTGCAATCCC 15834 ||| ||| .......... .......... .......... ......CTTA AAAT...... .......... 62 ATCATCAATG AATGTTTCAT TTTCCTGCAA CCAGAGATAT TCCATTAGTT ACACCAGAAA 15894 .......... .......... .......... .......... .......... .......... 62 GGAATACAAG AAATACAAAG TTTAGCCATA GAGCAATTAG AATATGCAAA ATTTGACATT 15954 .......... .......... .......... .......... .......... .......... 62 AATGATAATT CCAAGTACTT CAGTTTGTTT ATAGGCTGGA GAGCCGAACC AAAGAACAAA 16014 .......... .......... .......... .......... .......... .......... 62 TAACAATATA ATTCCACGAA TTTAATGTGA CAGCACATGA AGCAGAAATA ATGAAATTTA 16074 .......... .......... .......... .......... .......... .......... 62 ATTAACATTT ATGTTTTGAG AGTTTAAGTA AAAGAAATAA AATGCTCGGA AAATAAAACA 16134 .......... .......... .......... .......... .......... .......... 62 GAAGGAAACA AAGGAAGTAA AGCTACAAAT TTTATTTCCA TTGTTTCATT GGCGAGGGAA 16194 .......... .......... .......... .......... .......... .......... 62 TTATGAAGAA CAGGAAAAAT TTATTCAAGG GAACTCAGAT AAATTCTTTT CTTCTTTGTA 16254 .......... .......... .......... .......... .......... .......... 62 ATCCTATTCT CATCTCTATG CAAATTAAAG TACGTGCAGA ATTTAAATCT TACCCATTTT 16314 .......... .......... .......... .......... .......... .......... 62 CTATTTGTAA AGTTCAAAAA CCCACAGTTC ATAAAGTCCA AGGAAGAACT CTACATAAGA 16374 .......... .......... .......... .......... .......... .......... 62 TAGAATGAGA CAAGCCTATT GGACACAGAA ACAACGATTC ATGCTCAGTG AATTTAAAAG 16434 .......... .......... .......... .......... .......... .......... 62 TGAAAAGTGC AAAAAAAGCG TCTGCGAGGC TTGAAATGAA TAGGAGAGAA GTAAGGCACA 16494 .......... .......... .......... .......... .......... .......... 62 TGCTTTATTA AGTGAAGCGC ACAATTATTT GATGATGATT CCTTTACACA TGGCATGCAA 16554 .......... .......... .......... .......... .......... .......... 62 CCTTATGCTA TTCCTTTTGA TGAGCCGCTA TATGCTAAGA AAAAACACCA TTCTGTCTCC 16614 .......... .......... .......... .......... .......... .......... 62 TTGACCTTTG TTTCAAGAGC ATAAGGATTG ATATGTATTA GTGGGGTTTT TAAAATGAAG 16674 .......... .......... .......... .......... .......... .......... 62 TTACAGATGG TCCCTATTTT GCTTACGTTA CTACTTACTA CTTGGGGAAT ATAATTAGCA 16734 .......... .......... .......... .......... .......... .......... 62 ATCATGATTA TTTATGGTTT TCAATTGTGC ATGAGTACCC ATATCTCAGC TCTTTTAAAG 16794 .......... .......... .......... .......... .......... .......... 62 AAGATTACCC ATATCTAAGT TGTTCTAGCT AAACACGCAG CACAAATCAT GCCAAGCCCC 16854 .......... .......... .......... .......... .......... .......... 62 AAAAAAGTTT GTAATAATCC TAGTATCACT TCCTTATCAA GAGATATGAA GTAGACATCA 16914 .......... .......... .......... .......... .......... .......... 62 GATATCCACA AAGTACCTAA CTACAATCAA ACAATTATGG AATAACAGAT ATTGGAAGGA 16974 .......... .......... .......... .......... .......... .......... 62 CAAACCTCAT ATTCCACTTC TGCCCGCGAT ATGTCAGCTA TTTCACCTTC GTTTTCTTCA 17034 .......... .......... .......... .......... .......... .......... 62 TCAAGGAGTT CCGCTGTTAT TTGATTCCGC CGTGCCGAAC GCTCTTTGGC TGCATTGCGA 17094 .......... .......... .......... .......... .......... .......... 62 GGATCTGTCC GCCCACTAGG TTTATCTTCA CACCCATCAA TCGTGGTATC GCCCTGCTTT 17154 .......... .......... .......... .......... .......... .......... 62 GCCTTCTTAC CCTTTGGGAA CCTTACACGC TTCTGCCTGT GATGTTGAGG AAGAAAGCAA 17214 .......... .......... .......... .......... .......... .......... 62 CATGTCAATG CAAACATCCT TAAAATCCAG CATCATAAAT GAAACTATTT TGAACCCAAC 17274 .......... .......... .......... .......... .......... .......... 62 AAATGAGGTT GTCATAGAGC ATGGCAGACG TCACATGGAA AAAAAAAACG CTATTTGAAG 17334 .......... .......... .......... .......... .......... .......... 62 TTGTATTACT TGCTATTGCT GTCTCATGAA ACACATTATC TTTACAAGGA AAATAACAGT 17394 .......... .......... .......... .......... .......... .......... 62 AGGTAAAAAA GATCTATTTT TTCTCGTACT AAACTCATGA CAGTCTCAAC AACAAAATAC 17454 .......... .......... .......... .......... .......... .......... 62 AACCTCTAAT CTGAAAAAGA AAGCAGTCTA CTTTATCTTC AAAGACAAAC TATTGAGCAC 17514 .......... .......... .......... .......... .......... .......... 62 TGGAATGAAA TGATCACAGT TAGAGTAAAT AGATATAGAG ATTACATATA ACTAATCCAA 17574 .......... .......... .......... .......... .......... .......... 62 TTAGTTTGGG CATGAGGCAT AGTCACTGTA TAATTCCTTA AATCTCCAAC AAATAAAGTA 17634 .......... .......... .......... .......... .......... .......... 62 TTTTCTTGCA TAGTTCTCTC AAGGCCAAAC ACACCCTTCT TTATTAGACA TTTTCTAGGT 17694 .......... .......... .......... .......... .......... .......... 62 ACTAAGAATA CACAATCCAC CCATTCCCAC TAGATTTTTG CTCCAGGTTC ACATCATATA 17754 .......... .......... .......... .......... .......... .......... 62 TGAAATCAAC GGTAATTCAG ATTAGGAAAA AACAAGCTAA TAGAATCTGG GCGCATTTGC 17814 .......... .......... .......... .......... .......... .......... 62 AGAATAACAA AAATAGATAG CAGCTGAAAG AAAGCAAATC CAAGTACATA CTCCTGAACT 17874 .......... .......... .......... .......... .......... .......... 62 CCTCTGGGAA GCTCCTAAAA TTCTTACAAT AATGACATAA TAAATCAATC CCAGCAGAAG 17934 .......... .......... .......... .......... .......... .......... 62 CAAAAAATAC TATGTGTATT CTCCCTATCT ATTTAAGCCT CAATTGACAC AGTAAAGTGA 17994 .......... .......... .......... .......... .......... .......... 62 TATCTATGTG GATGGGAGGT AGTAGAGATC CCATAGGATA GAATTAATTG AGTTATAAAA 18054 .......... .......... .......... .......... .......... .......... 62 ACAAAAATGA GCTTCCTTAC TTATTTATCT ATTTTTATCT TTCTATTGAT ACAAAATACT 18114 .......... .......... .......... .......... .......... .......... 62 CCCCCTAGTT CACTTCTTTC GTTTTTTAGA CAACTGTAGT TACTAGACCA GCTTATGCGC 18174 .......... .......... .......... .......... .......... .......... 62 ACCTTAACTA ATTACATAGA TATCTGTCGC TCCCCACCAA AACAGCTATA AAGTAACTCT 18234 .......... .......... .......... .......... .......... .......... 62 ATCCTCAAGG CTAGGACAGG TAGAAAGAAA TCACTTTTCT TCTCTATGTT GGAATTTGAA 18294 .......... .......... .......... .......... .......... .......... 62 CCTTAGACCT CATGGTTCTC AACTCACTTC ATTAACCACT AGATCACACC CTTCCTTATT 18354 .......... .......... .......... .......... .......... .......... 62 CACTTTTTTA TGAAATCAAT GTCATTAAAT TTCAATGGTA AAATAAATTG GTTTCCTTTC 18414 .......... .......... .......... .......... .......... .......... 62 GCATTATGTT TTTATTATGA TTGTGGTGTT CACGCCAGTT TTCCCACACC TCAACTAATT 18474 .......... .......... .......... .......... .......... .......... 62 CCACCTCTCA CCATTAACAA CTATCAGGTA ACTCTGTCCA CCAAAACTAG GACAAATAGA 18534 .......... .......... .......... .......... .......... .......... 62 AAAAAATCAT CTAGCATTTT TGTCTCTACT AGAAATTGAA CATTAGACCT CATGATGCTC 18594 .......... .......... .......... .......... .......... .......... 62 AACCCACCTC CCTTGACCAC TAAGCCACAC CCTTTGAGAA GTTTTTTGTT AATTTTAATG 18654 .......... .......... .......... .......... .......... .......... 62 ACCTTGGTAT CCAAATACAT TGGATACGTC CCACCTCCCA CCAAATAACT TTGTTGTCTT 18714 .......... .......... .......... .......... .......... .......... 62 CCCTGAGTTT TATAAGACCT CAGAATTCTC AACCACTTCA TTAATCACTA AGCCACACCC 18774 .......... .......... .......... .......... .......... .......... 62 TTGGGGTTTC ACCACTATGT TTCAAACATA TACAAAATAT TATTTACTAA GAAATCACAA 18834 .......... .......... .......... .......... .......... .......... 62 ACTTACAGCT CAAATTTTAT ATTCCGAAAT CAATATAACA AATGAATATG AGCTTTCATC 18894 .......... .......... .......... .......... .......... .......... 62 TGTGCAGAAT CCCTAAGTAT GTTCAGAATA AATTAGGGCA CAAAATCACA TGAAATTTTT 18954 .......... .......... .......... .......... .......... .......... 62 CAAAAATAAA AAATAAAAAG AAAGAAGGAA GGAAATAGTT ACTCTGGAGC TTTATTGGAG 19014 .......... .......... .......... .......... .......... .......... 62 TCATCGTCCT CAACGAAGGG ACGTTTGGCA CGTCGCGATG AACCTTCTTC CATGGCGTAA 19074 .......... .......... .......... .......... .......... .......... 62 TCGGCAATTG ATATGAAGGA TTCAGAAAGG AAAAAAAATG AAGGGGCAAA GTGAAGAGAG 19134 .......... .......... .......... .......... .......... .......... 62 AGCGGTGGTA CTGGTAAACA TCAAAAAAAA TAATAATAAT AAATTCTATC TTACAAACTA 19194 .......... .......... .......... .......... .......... .......... 62 TAATACCTTT TTTAAATTGA TAAATATCTA AAATTAACAT TACCAATATT AATCTTATTG 19254 .......... .......... .......... .......... .......... .......... 62 GATAAATTCA AATAAGTTAT TGATAATATA GAAAAATAAT ATTATAAATT ATTAGTTGAG 19314 .......... .......... .......... .......... .......... .......... 62 AAATGTGACA ACACAAAAAA TATACTAATA GCTGAGATAA TTTGTAAAAT AAAATTATCA 19374 .......... .......... .......... .......... .......... .......... 62 TTTTACTTTA TTATGGATAT TCATGTCTAC TAGTCATTTT TATCATTAAT TAATATTTAG 19434 .......... .......... .......... .......... .......... .......... 62 GATGATGATT ATTATTATTA TTATTATATA TATATATATA TATATATATA TATATATATA 19494 .......... .......... .......... .......... .......... .......... 62 AAAGAGATAA AAATGTAAGA TCAAATTGTT TCATAAATAT ATAGAATAAA TTACAATTTA 19554 .......... .......... .......... .......... .......... .......... 62 CAAATATTAA TATTTTTTTA ATTTAATCAC TCTGTCACAG TTTTGCATAG AT 19606 | ||| ||| || .......... .......... .......... .......... GTCTGCTTAG AT 74 hqPGS_C04HBa0127E11.1+_SGN-E256217+ (15115 15168) ******************************************************************************** EST sequence 151 -strand 401 n (File: SGN-E248186-) 1 CAAAACTGTT TCTCCTGGTT CGAGCACATC AGCAATTCGC CTCTTCATCT TTCCTAGTTG 61 TTCTGATGTA AGGTCTTGAA TCTCATCTTC ATTTGATATC TTGATAGCTT TCTTCCCAGA 121 ATATGTTTTC TCAGTATCAA CACTATCAAG CCATGCATCC TTTATCTCAT TTTCATTTAA 181 ATATTCAACA TAGTTTCTTG ATGCATCAAA ATAACCTTCT TCTCTCTCTT TATTCAGATT 241 AAAAGGTTCT ATTGCAATCC CATCATCAAT GAATGTTTCA TTTTCCTCAT ATTCCACTTC 301 TGCCCGCGAT ATGTCAGCTA TTTCACCTTC GTTTTCTTCA TCAAGGAGTT CCGCTGTTAT 361 TTGATTCCGC CGTGCCGAAC GCTCTTTGGC TGCATTGCGA C Predicted gene structure (within gDNA segment 14851 to 17704): Exon 1 15501 15657 ( 157 n); cDNA 5 161 ( 157 n); score: 1.000 Intron 1 15658 15734 ( 77 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.98) Exon 2 15735 15858 ( 124 n); cDNA 162 285 ( 124 n); score: 0.992 Intron 2 15859 16979 (1121 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 16980 17094 ( 115 n); cDNA 286 400 ( 115 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-E248186- 0.997 396 0.988 C PGS_C04HBa0127E11.1+_SGN-E248186- (15501 15657,15735 15858,16980 17094) Alignment (genomic DNA sequence = upper lines): ACTGTTTCTC CTGGTTCGAG CACATCAGCA ATTCGCCTCT TCATCTTTCC TAGTTGTTCT 15560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTTCTC CTGGTTCGAG CACATCAGCA ATTCGCCTCT TCATCTTTCC TAGTTGTTCT 64 GATGTAAGGT CTTGAATCTC ATCTTCATTT GATATCTTGA TAGCTTTCTT CCCAGAATAT 15620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAAGGT CTTGAATCTC ATCTTCATTT GATATCTTGA TAGCTTTCTT CCCAGAATAT 124 GTTTTCTCAG TATCAACACT ATCAAGCCAT GCATCCTGTA CACTTACTAA GATCAGGAAA 15680 |||||||||| |||||||||| |||||||||| ||||||| GTTTTCTCAG TATCAACACT ATCAAGCCAT GCATCCT... .......... .......... 161 AGATGCAAGG AATGGGGCCT GGGGTAGAAA ATGTTTGATG TAAGACTAGC ACCTTTATCT 15740 |||||| .......... .......... .......... .......... .......... ....TTATCT 167 CATTTTCATT TAAATATTCA ACATAGTTTC CTGATGCATC AAAATAACCT TCTTCTCTCT 15800 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CATTTTCATT TAAATATTCA ACATAGTTTC TTGATGCATC AAAATAACCT TCTTCTCTCT 227 CTTTATTCAG ATTAAAAGGT TCTATTGCAA TCCCATCATC AATGAATGTT TCATTTTCCT 15860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTTTATTCAG ATTAAAAGGT TCTATTGCAA TCCCATCATC AATGAATGTT TCATTTTC.. 285 GCAACCAGAG ATATTCCATT AGTTACACCA GAAAGGAATA CAAGAAATAC AAAGTTTAGC 15920 .......... .......... .......... .......... .......... .......... 285 CATAGAGCAA TTAGAATATG CAAAATTTGA CATTAATGAT AATTCCAAGT ACTTCAGTTT 15980 .......... .......... .......... .......... .......... .......... 285 GTTTATAGGC TGGAGAGCCG AACCAAAGAA CAAATAACAA TATAATTCCA CGAATTTAAT 16040 .......... .......... .......... .......... .......... .......... 285 GTGACAGCAC ATGAAGCAGA AATAATGAAA TTTAATTAAC ATTTATGTTT TGAGAGTTTA 16100 .......... .......... .......... .......... .......... .......... 285 AGTAAAAGAA ATAAAATGCT CGGAAAATAA AACAGAAGGA AACAAAGGAA GTAAAGCTAC 16160 .......... .......... .......... .......... .......... .......... 285 AAATTTTATT TCCATTGTTT CATTGGCGAG GGAATTATGA AGAACAGGAA AAATTTATTC 16220 .......... .......... .......... .......... .......... .......... 285 AAGGGAACTC AGATAAATTC TTTTCTTCTT TGTAATCCTA TTCTCATCTC TATGCAAATT 16280 .......... .......... .......... .......... .......... .......... 285 AAAGTACGTG CAGAATTTAA ATCTTACCCA TTTTCTATTT GTAAAGTTCA AAAACCCACA 16340 .......... .......... .......... .......... .......... .......... 285 GTTCATAAAG TCCAAGGAAG AACTCTACAT AAGATAGAAT GAGACAAGCC TATTGGACAC 16400 .......... .......... .......... .......... .......... .......... 285 AGAAACAACG ATTCATGCTC AGTGAATTTA AAAGTGAAAA GTGCAAAAAA AGCGTCTGCG 16460 .......... .......... .......... .......... .......... .......... 285 AGGCTTGAAA TGAATAGGAG AGAAGTAAGG CACATGCTTT ATTAAGTGAA GCGCACAATT 16520 .......... .......... .......... .......... .......... .......... 285 ATTTGATGAT GATTCCTTTA CACATGGCAT GCAACCTTAT GCTATTCCTT TTGATGAGCC 16580 .......... .......... .......... .......... .......... .......... 285 GCTATATGCT AAGAAAAAAC ACCATTCTGT CTCCTTGACC TTTGTTTCAA GAGCATAAGG 16640 .......... .......... .......... .......... .......... .......... 285 ATTGATATGT ATTAGTGGGG TTTTTAAAAT GAAGTTACAG ATGGTCCCTA TTTTGCTTAC 16700 .......... .......... .......... .......... .......... .......... 285 GTTACTACTT ACTACTTGGG GAATATAATT AGCAATCATG ATTATTTATG GTTTTCAATT 16760 .......... .......... .......... .......... .......... .......... 285 GTGCATGAGT ACCCATATCT CAGCTCTTTT AAAGAAGATT ACCCATATCT AAGTTGTTCT 16820 .......... .......... .......... .......... .......... .......... 285 AGCTAAACAC GCAGCACAAA TCATGCCAAG CCCCAAAAAA GTTTGTAATA ATCCTAGTAT 16880 .......... .......... .......... .......... .......... .......... 285 CACTTCCTTA TCAAGAGATA TGAAGTAGAC ATCAGATATC CACAAAGTAC CTAACTACAA 16940 .......... .......... .......... .......... .......... .......... 285 TCAAACAATT ATGGAATAAC AGATATTGGA AGGACAAACC TCATATTCCA CTTCTGCCCG 17000 | |||||||||| |||||||||| .......... .......... .......... .........C TCATATTCCA CTTCTGCCCG 306 CGATATGTCA GCTATTTCAC CTTCGTTTTC TTCATCAAGG AGTTCCGCTG TTATTTGATT 17060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATGTCA GCTATTTCAC CTTCGTTTTC TTCATCAAGG AGTTCCGCTG TTATTTGATT 366 CCGCCGTGCC GAACGCTCTT TGGCTGCATT GCGA 17094 |||||||||| |||||||||| |||||||||| |||| CCGCCGTGCC GAACGCTCTT TGGCTGCATT GCGA 400 hqPGS_C04HBa0127E11.1+_SGN-E248186- (15501 15657,15735 15858,16980 17094) ******************************************************************************** EST sequence 34 +strand 586 n (File: SGN-E308984+) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 301 AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 421 GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 481 TGGAAAAGTG TAGAGGCTTA CCTCTTGCGA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGGGCT AAACGAATGG AAAAAGGTGA AAGATCACCT TTGGAA Predicted gene structure (within gDNA segment 20619 to 22946): Exon 1 21219 21748 ( 530 n); cDNA 1 529 ( 529 n); score: 0.884 Intron 1 21749 22612 ( 864 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.88) Exon 2 22613 22669 ( 57 n); cDNA 530 586 ( 57 n); score: 0.895 MATCH C04HBa0127E11.1+ SGN-E308984+ 0.885 587 1.002 C PGS_C04HBa0127E11.1+_SGN-E308984+ (21219 21748,22613 22669) Alignment (genomic DNA sequence = upper lines): GCAAGACCAC TCTTGCGAGA AACCTCTACA GAAGTCCTAG TATATAGTCA ATACCTTCCC 21278 |||||||||| |||||| ||| |||||||||| |||||||| | |||||||| |||||| || GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG --TATAGTCA ATACCTGGCC 58 TACACGTGTG TCGATATGTG TTTCTCAAGA GTGCAACACA ATGGATCTTC TTAAGACTAT 21338 |||||||| | |||||||| |||||||||| || ||||||| |||||||||| |||||||||| TACACGTGCT TGGATATGTG TTTCTCAAGA GTACAACACA ATGGATCTTC TTAAGACTAT 118 CATAAAATCC ATCCAAGTTT GCACCAACGA AACTCTTGAT TTGTTGGAAA GGATGGCAGA 21398 |||||||||| ||||||| || |||||| | |||||| | |||||||||| ||||| || CATAAAATCC ATCCAAGGTT GCACCATGGG AACTCTAGGA TTGTTGGAAA AGATGGATGA 178 AAGAGATCTA GAAATTTACC TTCGTAAGCT ATTAACAAAA CACAAATACC TTTTGGTGGT 21458 |||||||||| |||| | ||| ||||| | || | | | | || | |||||||| || | ||||| AAGAGATCTA GAAAATCACC TTCGTGATCT ACTGAAAGAA CGCAAATACC TTGTAGTGGT 238 TGATGGTGTG TGGCTAATAG AAGCATGGAA GAGTTTGAAA AGAGCATTTC CGGATAACAA 21518 ||||| | | |||| | || |||||||| | ||||||||| |||||||| | ||||| | | TGATGATATA TGGCAGAGAG AAGCATGGGA AAGTTTGAAA AGAGCATTCC CGGATGGCGA 298 TAATGGCAGC AGAGTTGTTA TTACCACACG CAAAGTGGAT GTCGCTGAAA GAGCAGACGA 21578 || |||||| ||||| ||| ||||||| || ||||| |||| || ||||||| |||||||||| GAAGGGCAGC AGAGTCATTA TTACCACGCG CAAAGAGGAT GTTGCTGAAA GAGCAGACGA 358 CAGAGGTTTT GTCCATGAAC TTCGTTTCCT AAGCCAAGAA GAAAGTTGGG AT-TCTTTTG 21637 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| || ||||||| CAGAGGTTTT GTTCATAAAC TTCGTTTCCT AAGCCAAGAA GAAAGTTGGG ATCTCTTTTG 418 TAGGAAACTA CTTGATGTTC GATCAATGGT TACAGCAATG GAAAGTCTAG CTAAGGATAT 21697 ||||||||| |||||||||| || ||||||| | ||| |||| |||||||||| || ||||||| CAGGAAACTA CTTGATGTTC GAGCAATGGT TCCAGAAATG GAAAGTCTAG CTGAGGATAT 478 GGTGGAAAAG TGTAGAGGCT TACCTCTTGC AATTGTTGTA TTGAGCGGAT TGTTGTTCAT 21757 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| | GGTGGAAAAG TGTAGAGGCT TACCTCTTGC GATTGTTGTA TTGAGCGGAC T......... 529 CTTGTATTCC AAACATACTT AGAACAAAAC TTTGAACATC TTTGTAAGAA AACAAAGTTT 21817 .......... .......... .......... .......... .......... .......... 529 AAGAACATTT TCACAACTAG AAAATTAAAA CTAGTAGCGA AACTAGAATC AGAAACAGAT 21877 .......... .......... .......... .......... .......... .......... 529 TTTAAAAAAA ATATACGAAA TATTTTTCTT AAAGAGGAAT TGTTGTTAAT ATGTGTCTAA 21937 .......... .......... .......... .......... .......... .......... 529 AGAATCTTAC TGATTCCAAC AAACTTTGCA GAAACACGAA GTTACCAAGT TTAATGAACC 21997 .......... .......... .......... .......... .......... .......... 529 AGTGAAGAAT AGAAGAATAG AAGAACTGAA ATTAATTCAC AAATCTAAAA TTTGTAAAAC 22057 .......... .......... .......... .......... .......... .......... 529 ACGTACCAGA ATCTGAAAAA AAATTTAATA GGAAAAAGAT CAAGTCCACT GAATTCACAG 22117 .......... .......... .......... .......... .......... .......... 529 TGTCCCCTTA AGGAAATTAT TCCCCTCTAG TATCCGAGGT TTGATTTGGA ATATGACCTC 22177 .......... .......... .......... .......... .......... .......... 529 CTAGGGTAAA ATGATCTCAA TCACCAGAGT ATAGATACCA AAAACTCCGG TGTCAGCGAA 22237 .......... .......... .......... .......... .......... .......... 529 CCACTCAACG GCAGTAAAGT ACACTTAGAA TACTAAATTT AGTAGTTGAA GAAGAAGTCC 22297 .......... .......... .......... .......... .......... .......... 529 ATTAATTCTT TTTTTAAAAT GAGAGGAAAT CCCTCAATTT ATAGAAGACA AAGGGTGGTG 22357 .......... .......... .......... .......... .......... .......... 529 CGAAAAGGTT CTTATTGTGC CTTACCGGAA AGGTCACAAA CCTTTGGAAA AGTCACAATC 22417 .......... .......... .......... .......... .......... .......... 529 TTTCAGAATG ATCGTCACCT TTCATAAAAC TCACAACTTT CCATAAAAGT CACAATTTTT 22477 .......... .......... .......... .......... .......... .......... 529 CATAAAAATT GCAACTTTTC ATAAAAGTCA CCACTTTTCA TCAAAGTCGC AACATTTCAT 22537 .......... .......... .......... .......... .......... .......... 529 AAAAGTCACA ACTCTTCATA AAAGTCGCAA CTCTTCATTT TCCATTCACG CCTTTTTTAA 22597 .......... .......... .......... .......... .......... .......... 529 AATCCAACAC GGATTACTTT CGCATAAAAT GGGGCTAGAC GAATGGCAAA AGGTGAAAGA 22657 ||||| ||||||||| ||||||| || |||||| ||| |||||||||| .......... .....ACTTT CGCATAAAAA GGGGCTAAAC GAATGGAAAA AGGTGAAAGA 574 CTGCCTTTGG AA 22669 ||||||| || TCACCTTTGG AA 586 hqPGS_C04HBa0127E11.1+_SGN-E308984+ (21219 21748,22613 22669) ******************************************************************************** EST sequence 92 -strand 641 n (File: SGN-E255576-) 1 CAAGAGTACA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGGTCGCACC 61 ATGGGAACTC TAGGATTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 121 GATCTATTGA AAGAACGCAA ATACCTTGTG GTGGTTGATG ATGTCTGGCA AAGAGAAGCA 181 TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GACAAGAATG GCAGCAGAGT CATTATTACC 241 ACGCGCAAAG AGGATATCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 301 TTCCTAAGTC AAGAAGAAAG TTGGGATCTC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 361 ATGGTTGCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAGTGTAG AGGTTTACCT 421 CTTGCAATTG TTGTATTGAG CGGACTACTT TCGCATAAAA AGGATCTAGA TGAATGGCAA 481 AAGGTGAAAG ATCACCTTTG GAAGAGCATT AAAGAAGATA AATCTGTTGA AATCTCCAAC 541 ATACTATCAC TAAGCTACAA TGATTTGTCA ATTGAGCTCA AGCAGTGTTT TCTCTACTTT 601 GGTATGTTTC CAGAAGATCG AGTGGTCAAG GCTGAAAACA C Predicted gene structure (within gDNA segment 20622 to 24316): Exon 1 21304 21748 ( 445 n); cDNA 1 446 ( 446 n); score: 0.891 Intron 1 21749 22612 ( 864 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.86) Exon 2 22613 22803 ( 191 n); cDNA 447 640 ( 194 n); score: 0.825 MATCH C04HBa0127E11.1+ SGN-E255576- 0.871 636 0.992 C PGS_C04HBa0127E11.1+_SGN-E255576- (21304 21748,22613 22803) Alignment (genomic DNA sequence = upper lines): CAAGAGTGCA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGTTTGCACC 21363 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| || | ||||| CAAGAGTACA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGGTCGCACC 60 AACGAAACTC TTGATTTGTT GGAAAGGATG GCAGAAAGAG ATCTAGAAAT TTACCTTCGT 21423 | | ||||| | | ||||| ||||| |||| | ||||||| ||||||||| |||||||| ATGGGAACTC TAGGATTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 120 AAGCTATTAA CAAAACACAA ATACCTTTTG GTGGTTGATG GTGTGTGGCT AATAGAAGCA 21483 | ||||| | | ||| ||| ||||||| || |||||||||| ||| |||| || ||||||| GATCTATTGA AAGAACGCAA ATACCTTGTG GTGGTTGATG ATGTCTGGCA AAGAGAAGCA 180 TGGAAGAGTT TGAAAAGAGC ATTTCCGGAT AACAATAATG GCAGCAGAGT TGTTATTACC 21543 ||| |||||| |||||||||| ||| |||||| |||| |||| |||||||||| |||||||| TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GACAAGAATG GCAGCAGAGT CATTATTACC 240 ACACGCAAAG TGGATGTCGC TGAAAGAGCA GACGACAGAG GTTTTGTCCA TGAACTTCGT 21603 || ||||||| |||| |||| |||||||||| | |||||||| ||||||| || | |||||||| ACGCGCAAAG AGGATATCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 300 TTCCTAAGCC AAGAAGAAAG TTGGGAT-TC TTTTGTAGGA AACTACTTGA TGTTCGATCA 21662 |||||||| | |||||||||| ||||||| || ||| ||||| |||||||||| ||||||| || TTCCTAAGTC AAGAAGAAAG TTGGGATCTC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 360 ATGGTTACAG CAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAGTGTAG AGGCTTACCT 21722 |||||| ||| ||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ATGGTTGCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAGTGTAG AGGTTTACCT 420 CTTGCAATTG TTGTATTGAG CGGATTGTTG TTCATCTTGT ATTCCAAACA TACTTAGAAC 21782 |||||||||| |||||||||| |||| | CTTGCAATTG TTGTATTGAG CGGACT.... .......... .......... .......... 446 AAAACTTTGA ACATCTTTGT AAGAAAACAA AGTTTAAGAA CATTTTCACA ACTAGAAAAT 21842 .......... .......... .......... .......... .......... .......... 446 TAAAACTAGT AGCGAAACTA GAATCAGAAA CAGATTTTAA AAAAAATATA CGAAATATTT 21902 .......... .......... .......... .......... .......... .......... 446 TTCTTAAAGA GGAATTGTTG TTAATATGTG TCTAAAGAAT CTTACTGATT CCAACAAACT 21962 .......... .......... .......... .......... .......... .......... 446 TTGCAGAAAC ACGAAGTTAC CAAGTTTAAT GAACCAGTGA AGAATAGAAG AATAGAAGAA 22022 .......... .......... .......... .......... .......... .......... 446 CTGAAATTAA TTCACAAATC TAAAATTTGT AAAACACGTA CCAGAATCTG AAAAAAAATT 22082 .......... .......... .......... .......... .......... .......... 446 TAATAGGAAA AAGATCAAGT CCACTGAATT CACAGTGTCC CCTTAAGGAA ATTATTCCCC 22142 .......... .......... .......... .......... .......... .......... 446 TCTAGTATCC GAGGTTTGAT TTGGAATATG ACCTCCTAGG GTAAAATGAT CTCAATCACC 22202 .......... .......... .......... .......... .......... .......... 446 AGAGTATAGA TACCAAAAAC TCCGGTGTCA GCGAACCACT CAACGGCAGT AAAGTACACT 22262 .......... .......... .......... .......... .......... .......... 446 TAGAATACTA AATTTAGTAG TTGAAGAAGA AGTCCATTAA TTCTTTTTTT AAAATGAGAG 22322 .......... .......... .......... .......... .......... .......... 446 GAAATCCCTC AATTTATAGA AGACAAAGGG TGGTGCGAAA AGGTTCTTAT TGTGCCTTAC 22382 .......... .......... .......... .......... .......... .......... 446 CGGAAAGGTC ACAAACCTTT GGAAAAGTCA CAATCTTTCA GAATGATCGT CACCTTTCAT 22442 .......... .......... .......... .......... .......... .......... 446 AAAACTCACA ACTTTCCATA AAAGTCACAA TTTTTCATAA AAATTGCAAC TTTTCATAAA 22502 .......... .......... .......... .......... .......... .......... 446 AGTCACCACT TTTCATCAAA GTCGCAACAT TTCATAAAAG TCACAACTCT TCATAAAAGT 22562 .......... .......... .......... .......... .......... .......... 446 CGCAACTCTT CATTTTCCAT TCACGCCTTT TTTAAAATCC AACACGGATT ACTTTCGCAT 22622 |||||||||| .......... .......... .......... .......... .......... ACTTTCGCAT 456 AAAATGGGGC TAGACGAATG GCAAAAGGTG AAAGACTGCC TTTGGAAGAA CATT---GAA 22679 |||| || | |||| ||||| |||||||||| ||||| || ||||||||| |||| ||| AAAAAGGATC TAGATGAATG GCAAAAGGTG AAAGATCACC TTTGGAAGAG CATTAAAGAA 516 GATGACTCTA TTGAAATCTC CTATATACTA TCATTGAGCT ATAATGATTT GTCAATTGTG 22739 ||| | ||| |||||||||| | | |||||| ||| | |||| | |||||||| |||||||| | GATAAATCTG TTGAAATCTC CAACATACTA TCACTAAGCT ACAATGATTT GTCAATTGAG 576 CTCAAGCAAT GTTTTCTGTA CTTTGATATT TTTCCAGAAG ATCAAGTGGT CGATGTTGAG 22799 |||||||| | ||||||| || ||||| ||| |||||||||| ||| |||||| | | | ||| CTCAAGCAGT GTTTTCTCTA CTTTGGTATG TTTCCAGAAG ATCGAGTGGT CAAGGCTGAA 636 AACA 22803 |||| AACA 640 hqPGS_C04HBa0127E11.1+_SGN-E255576- (21304 21748,22613 22803) ******************************************************************************** EST sequence 127 -strand 469 n (File: SGN-E258424-) 1 GAGAAGCATG GGAGAGTTTG AAAAGAGCAT TCCCGGATGA CAAGAATGGC AGCAGAGTCA 61 TTATTACCAC GCGCAAAGAG GATATCGCTG AAAGAGCAGC CGACAGAGGT TTTGTTCATA 121 AACTTCGTTT CCTAAGTCAA GAAGAAAGTT GGGATCTCTT TCTTAGGAAA CTACTTGATG 181 TTCGAGCAAT GGTTGCAGAA ATGGAAAGTC TAGCTAAGGA TATGGTGGAA AAGTGTAGAG 241 GTTTACCTCT TGCAATTGTT GTATTGAGCG GACTACTTTC GCATAAAAAG GATCTAGATG 301 AATGGCAAAA GGTGAAAGAT CACCTTTGGA AGAGCATTAA AGAAGATAAA TCTGTTGAAA 361 TCTCCAACAT ACTATCACTA AGCTACAATG ATTTGTCAAT TGAGCTCAAG CAGTGTTTTC 421 TCTACTTTGG TATGTTTCCA GAAGATCGAG TGGTCAAGGC TGAAAACAC Predicted gene structure (within gDNA segment 19786 to 24316): Exon 1 21477 21748 ( 272 n); cDNA 2 274 ( 273 n); score: 0.917 Intron 1 21749 22612 ( 864 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.86) Exon 2 22613 22803 ( 191 n); cDNA 275 468 ( 194 n); score: 0.825 MATCH C04HBa0127E11.1+ SGN-E258424- 0.879 463 0.987 C PGS_C04HBa0127E11.1+_SGN-E258424- (21477 21748,22613 22803) Alignment (genomic DNA sequence = upper lines): AGAAGCATGG AAGAGTTTGA AAAGAGCATT TCCGGATAAC AATAATGGCA GCAGAGTTGT 21536 |||||||||| ||||||||| |||||||||| |||||| || || ||||||| ||||||| | AGAAGCATGG GAGAGTTTGA AAAGAGCATT CCCGGATGAC AAGAATGGCA GCAGAGTCAT 61 TATTACCACA CGCAAAGTGG ATGTCGCTGA AAGAGCAGAC GACAGAGGTT TTGTCCATGA 21596 ||||||||| ||||||| || || ||||||| |||||||| | |||||||||| |||| ||| | TATTACCACG CGCAAAGAGG ATATCGCTGA AAGAGCAGCC GACAGAGGTT TTGTTCATAA 121 ACTTCGTTTC CTAAGCCAAG AAGAAAGTTG GGAT-TCTTT TGTAGGAAAC TACTTGATGT 21655 |||||||||| ||||| |||| |||||||||| |||| ||||| |||||||| |||||||||| ACTTCGTTTC CTAAGTCAAG AAGAAAGTTG GGATCTCTTT CTTAGGAAAC TACTTGATGT 181 TCGATCAATG GTTACAGCAA TGGAAAGTCT AGCTAAGGAT ATGGTGGAAA AGTGTAGAGG 21715 |||| ||||| ||| ||| || |||||||||| |||||||||| |||||||||| |||||||||| TCGAGCAATG GTTGCAGAAA TGGAAAGTCT AGCTAAGGAT ATGGTGGAAA AGTGTAGAGG 241 CTTACCTCTT GCAATTGTTG TATTGAGCGG ATTGTTGTTC ATCTTGTATT CCAAACATAC 21775 ||||||||| |||||||||| |||||||||| | | TTTACCTCTT GCAATTGTTG TATTGAGCGG ACT....... .......... .......... 274 TTAGAACAAA ACTTTGAACA TCTTTGTAAG AAAACAAAGT TTAAGAACAT TTTCACAACT 21835 .......... .......... .......... .......... .......... .......... 274 AGAAAATTAA AACTAGTAGC GAAACTAGAA TCAGAAACAG ATTTTAAAAA AAATATACGA 21895 .......... .......... .......... .......... .......... .......... 274 AATATTTTTC TTAAAGAGGA ATTGTTGTTA ATATGTGTCT AAAGAATCTT ACTGATTCCA 21955 .......... .......... .......... .......... .......... .......... 274 ACAAACTTTG CAGAAACACG AAGTTACCAA GTTTAATGAA CCAGTGAAGA ATAGAAGAAT 22015 .......... .......... .......... .......... .......... .......... 274 AGAAGAACTG AAATTAATTC ACAAATCTAA AATTTGTAAA ACACGTACCA GAATCTGAAA 22075 .......... .......... .......... .......... .......... .......... 274 AAAAATTTAA TAGGAAAAAG ATCAAGTCCA CTGAATTCAC AGTGTCCCCT TAAGGAAATT 22135 .......... .......... .......... .......... .......... .......... 274 ATTCCCCTCT AGTATCCGAG GTTTGATTTG GAATATGACC TCCTAGGGTA AAATGATCTC 22195 .......... .......... .......... .......... .......... .......... 274 AATCACCAGA GTATAGATAC CAAAAACTCC GGTGTCAGCG AACCACTCAA CGGCAGTAAA 22255 .......... .......... .......... .......... .......... .......... 274 GTACACTTAG AATACTAAAT TTAGTAGTTG AAGAAGAAGT CCATTAATTC TTTTTTTAAA 22315 .......... .......... .......... .......... .......... .......... 274 ATGAGAGGAA ATCCCTCAAT TTATAGAAGA CAAAGGGTGG TGCGAAAAGG TTCTTATTGT 22375 .......... .......... .......... .......... .......... .......... 274 GCCTTACCGG AAAGGTCACA AACCTTTGGA AAAGTCACAA TCTTTCAGAA TGATCGTCAC 22435 .......... .......... .......... .......... .......... .......... 274 CTTTCATAAA ACTCACAACT TTCCATAAAA GTCACAATTT TTCATAAAAA TTGCAACTTT 22495 .......... .......... .......... .......... .......... .......... 274 TCATAAAAGT CACCACTTTT CATCAAAGTC GCAACATTTC ATAAAAGTCA CAACTCTTCA 22555 .......... .......... .......... .......... .......... .......... 274 TAAAAGTCGC AACTCTTCAT TTTCCATTCA CGCCTTTTTT AAAATCCAAC ACGGATTACT 22615 ||| .......... .......... .......... .......... .......... .......ACT 277 TTCGCATAAA ATGGGGCTAG ACGAATGGCA AAAGGTGAAA GACTGCCTTT GGAAGAACAT 22675 |||||||||| | || |||| | |||||||| |||||||||| || ||||| |||||| ||| TTCGCATAAA AAGGATCTAG ATGAATGGCA AAAGGTGAAA GATCACCTTT GGAAGAGCAT 337 T---GAAGAT GACTCTATTG AAATCTCCTA TATACTATCA TTGAGCTATA ATGATTTGTC 22732 | |||||| | ||| ||| |||||||| | ||||||||| | ||||| | |||||||||| TAAAGAAGAT AAATCTGTTG AAATCTCCAA CATACTATCA CTAAGCTACA ATGATTTGTC 397 AATTGTGCTC AAGCAATGTT TTCTGTACTT TGATATTTTT CCAGAAGATC AAGTGGTCGA 22792 ||||| |||| ||||| |||| |||| ||||| || ||| ||| |||||||||| ||||||| | AATTGAGCTC AAGCAGTGTT TTCTCTACTT TGGTATGTTT CCAGAAGATC GAGTGGTCAA 457 TGTTGAGAAC A 22803 | ||| ||| | GGCTGAAAAC A 468 hqPGS_C04HBa0127E11.1+_SGN-E258424- (21477 21748,22613 22803) ******************************************************************************** EST sequence 121 -strand 396 n (File: SGN-E258522-) 1 AAGAGGATAT CGTTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 61 GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTG 121 CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA 181 TTGTTGTATT GAGCGGACTA CTTTCGCATA AAAAGGATCT AGATGAATGG CAAAAGGTGA 241 AAGATCACCT TTGGAAGAGC ATTAAAGAAG ATAAATCTGT TGAAATCTCC AACATACTAT 301 CACTAAGCTA CAATGATTTG TCAATTGAGC TCAAGCAGTG TTTTCTCTAC TTTGGTATGT 361 TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA ACACAC Predicted gene structure (within gDNA segment 20536 to 24336): Exon 1 21551 21748 ( 198 n); cDNA 1 199 ( 199 n); score: 0.917 Intron 1 21749 22612 ( 864 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.86) Exon 2 22613 22803 ( 191 n); cDNA 200 393 ( 194 n); score: 0.825 MATCH C04HBa0127E11.1+ SGN-E258522- 0.871 389 0.982 C PGS_C04HBa0127E11.1+_SGN-E258522- (21551 21748,22613 22803) Alignment (genomic DNA sequence = upper lines): AAGTGGATGT CGCTGAAAGA GCAGACGACA GAGGTTTTGT CCATGAACTT CGTTTCCTAA 21610 ||| |||| | || ||||||| |||| ||||| |||||||||| ||| ||||| |||||||||| AAGAGGATAT CGTTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 60 GCCAAGAAGA AAGTTGGGAT -TCTTTTGTA GGAAACTACT TGATGTTCGA TCAATGGTTA 21669 | |||||||| |||||||||| ||||| || |||||||||| |||||||||| |||||||| GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTG 120 CAGCAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAGTG TAGAGGCTTA CCTCTTGCAA 21729 ||| |||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA 180 TTGTTGTATT GAGCGGATTG TTGTTCATCT TGTATTCCAA ACATACTTAG AACAAAACTT 21789 |||||||||| ||||||| | TTGTTGTATT GAGCGGACT. .......... .......... .......... .......... 199 TGAACATCTT TGTAAGAAAA CAAAGTTTAA GAACATTTTC ACAACTAGAA AATTAAAACT 21849 .......... .......... .......... .......... .......... .......... 199 AGTAGCGAAA CTAGAATCAG AAACAGATTT TAAAAAAAAT ATACGAAATA TTTTTCTTAA 21909 .......... .......... .......... .......... .......... .......... 199 AGAGGAATTG TTGTTAATAT GTGTCTAAAG AATCTTACTG ATTCCAACAA ACTTTGCAGA 21969 .......... .......... .......... .......... .......... .......... 199 AACACGAAGT TACCAAGTTT AATGAACCAG TGAAGAATAG AAGAATAGAA GAACTGAAAT 22029 .......... .......... .......... .......... .......... .......... 199 TAATTCACAA ATCTAAAATT TGTAAAACAC GTACCAGAAT CTGAAAAAAA ATTTAATAGG 22089 .......... .......... .......... .......... .......... .......... 199 AAAAAGATCA AGTCCACTGA ATTCACAGTG TCCCCTTAAG GAAATTATTC CCCTCTAGTA 22149 .......... .......... .......... .......... .......... .......... 199 TCCGAGGTTT GATTTGGAAT ATGACCTCCT AGGGTAAAAT GATCTCAATC ACCAGAGTAT 22209 .......... .......... .......... .......... .......... .......... 199 AGATACCAAA AACTCCGGTG TCAGCGAACC ACTCAACGGC AGTAAAGTAC ACTTAGAATA 22269 .......... .......... .......... .......... .......... .......... 199 CTAAATTTAG TAGTTGAAGA AGAAGTCCAT TAATTCTTTT TTTAAAATGA GAGGAAATCC 22329 .......... .......... .......... .......... .......... .......... 199 CTCAATTTAT AGAAGACAAA GGGTGGTGCG AAAAGGTTCT TATTGTGCCT TACCGGAAAG 22389 .......... .......... .......... .......... .......... .......... 199 GTCACAAACC TTTGGAAAAG TCACAATCTT TCAGAATGAT CGTCACCTTT CATAAAACTC 22449 .......... .......... .......... .......... .......... .......... 199 ACAACTTTCC ATAAAAGTCA CAATTTTTCA TAAAAATTGC AACTTTTCAT AAAAGTCACC 22509 .......... .......... .......... .......... .......... .......... 199 ACTTTTCATC AAAGTCGCAA CATTTCATAA AAGTCACAAC TCTTCATAAA AGTCGCAACT 22569 .......... .......... .......... .......... .......... .......... 199 CTTCATTTTC CATTCACGCC TTTTTTAAAA TCCAACACGG ATTACTTTCG CATAAAATGG 22629 ||||||| ||||||| || .......... .......... .......... .......... ...ACTTTCG CATAAAAAGG 216 GGCTAGACGA ATGGCAAAAG GTGAAAGACT GCCTTTGGAA GAACATT--- GAAGATGACT 22686 ||||| || |||||||||| |||||||| ||||||||| || |||| |||||| | | ATCTAGATGA ATGGCAAAAG GTGAAAGATC ACCTTTGGAA GAGCATTAAA GAAGATAAAT 276 CTATTGAAAT CTCCTATATA CTATCATTGA GCTATAATGA TTTGTCAATT GTGCTCAAGC 22746 || ||||||| |||| | ||| |||||| | | |||| ||||| |||||||||| | |||||||| CTGTTGAAAT CTCCAACATA CTATCACTAA GCTACAATGA TTTGTCAATT GAGCTCAAGC 336 AATGTTTTCT GTACTTTGAT ATTTTTCCAG AAGATCAAGT GGTCGATGTT GAGAACA 22803 | |||||||| ||||||| | || ||||||| |||||| ||| |||| | | | || |||| AGTGTTTTCT CTACTTTGGT ATGTTTCCAG AAGATCGAGT GGTCAAGGCT GAAAACA 393 hqPGS_C04HBa0127E11.1+_SGN-E258522- (21551 21748,22613 22803) ******************************************************************************** EST sequence 5 +strand 857 n (File: SGN-E538064+) 1 ATTATAATTG CAGACTTAAA GGAGTATAAA ATCACTAAGA TTTTTGTCTC CACCAAAAAT 61 ACAGATTTAA ATAATTTCCT TAAGATTGTT GCCAATCTGT GTTAAGAAAA TCAGAAATTA 121 CTGGTTGTGA TAAATCATTC AGAAACACGA AGTAACTGAG ATTTTTAGAA CCACTAAATA 181 AGATGAACAT AAATTTATTT GTAAAAATAA TTTAATCTGT AAAACTTACC AGAATCTTGA 241 ATACTCTTTT TGATAATTTA GGAAAAAAAT CAAGTCCACT GAATTCACAG TGTCCCCTTA 301 AGGAAATTAT TCCCCTGTAG TATCCGAGGT TTGATTTGGA ATATAACCTC CCAGGGTAAA 361 ATGATCTTAA TCAGTAGAGT ATAGATACCA AAAACTCTAC TGTCAGCGAA TCAATCCACA 421 ACAGGAAAGT ACACGAAGAA AAATGTGTTT TTTAAGAAGT AGGAAGATCA GAAAATTCGT 481 TAGTAAATAT TCTGAAGACT GAATGGTATT TATAGGCAAG AATAATATAT TCTGAAAGGT 541 TGCAACTCTT TCAGAATTGA CACAACCATT AATGAAAGGT TGCAAACTTT CAAATGGTAT 601 TGACTGTTCC TGAAAGTTGC AACCTTTCAG AACAGTGGCG GGAATTTTTA AATATAACGG 661 AATTTAAAAC GGGTCACGCG CGCGGATCCG AGTCGGGTCG GGTTAACTAA AAAGTTGAAA 721 ACAATTCGGT TAATTTCTGT TATCAACTGA TTAATTGAAA ATAATTTTTG GCCATTTAAN 781 NTTATTAATA AATAATTAAA ATAATTTGTC CAAAAAATAT CTCTCGATCA TTTGCCAAGT 841 CGAAGCCGAG CGAGCGA Predicted gene structure (within gDNA segment 18816 to 28511): Exon 1 21641 21672 ( 32 n); cDNA 114 142 ( 29 n); score: 0.719 Intron 1 21673 21968 ( 296 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.59) Exon 2 21969 22315 ( 347 n); cDNA 143 487 ( 345 n); score: 0.716 Intron 2 22316 22435 ( 120 n); Pd: 0.000 (s: 0.52), Pa: 0.000 (s: 0.44) Exon 3 22436 22563 ( 128 n); cDNA 488 618 ( 131 n); score: 0.555 Intron 3 22564 24854 (2291 n); Pd: 0.946 (s: 0.62), Pa: 0.948 (s: 0) Exon 4 24855 24861 ( 7 n); cDNA 619 625 ( 7 n); score: 0.571 Intron 4 24862 27814 (2953 n); Pd: 0.000 (s: 0), Pa: 0.866 (s: 0) Exon 5 27815 27824 ( 10 n); cDNA 626 635 ( 10 n); score: 0.700 MATCH C04HBa0127E11.1+ SGN-E538064+ 0.673 524 0.611 C PGS_C04HBa0127E11.1+_SGN-E538064+ (21641 21672,21969 22315,22436 22563,24855 24861,27815 27824) Alignment (genomic DNA sequence = upper lines): GAAACTACTT GATGTTCGAT CAATGGTTAC AGCAATGGAA AGTCTAGCTA AGGATATGGT 21700 |||| |||| | ||| ||| ||| || | || GAAATTACTG GTTGT--GAT AAATCATT-C AG........ .......... .......... 142 GGAAAAGTGT AGAGGCTTAC CTCTTGCAAT TGTTGTATTG AGCGGATTGT TGTTCATCTT 21760 .......... .......... .......... .......... .......... .......... 142 GTATTCCAAA CATACTTAGA ACAAAACTTT GAACATCTTT GTAAGAAAAC AAAGTTTAAG 21820 .......... .......... .......... .......... .......... .......... 142 AACATTTTCA CAACTAGAAA ATTAAAACTA GTAGCGAAAC TAGAATCAGA AACAGATTTT 21880 .......... .......... .......... .......... .......... .......... 142 AAAAAAAATA TACGAAATAT TTTTCTTAAA GAGGAATTGT TGTTAATATG TGTCTAAAGA 21940 .......... .......... .......... .......... .......... .......... 142 ATCTTACTGA TTCCAACAAA CTTTGCAGAA ACACGAAGTT ACCAAG-TTT AATGAACCAG 21999 || ||||||||| || || ||| |||||| .......... .......... ........AA ACACGAAGTA ACTGAGATTT TTAGAACCAC 174 TGAAGAATA- GAAGA-ATA- GAAGAACTGA AATTAATTCA CAAATCTAAA ATTTGTAAAA 22056 | || || | ||| | | | | | | || ||||| | | | |||| | || | | TAAATAAGAT GAACATAAAT TTATTTGTAA AAATAATTTA -ATCTGTAAA ACTTACCAGA 233 CACGTACCAG AATCTGAAAA AAAATTTAAT AGGAAAAAGA TCAAGTCCAC TGAATTCACA 22116 | | | | ||| | || || | |||||||| | |||||||||| |||||||||| ATCTT-GAAT ACTCTTTTTG ATAA-TT--T AGGAAAAAAA TCAAGTCCAC TGAATTCACA 289 GTGTCCCCTT AAGGAAATTA TTCCCCTCTA GTATCCGAGG TTTGATTTGG AATATGACCT 22176 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||| |||| GTGTCCCCTT AAGGAAATTA TTCCCCTGTA GTATCCGAGG TTTGATTTGG AATATAACCT 349 CCTAGGGTAA AATGATCTCA ATCACCAGAG TATAGATACC AAAAACTCCG GTGTCAGCGA 22236 || ||||||| |||||||| | |||| |||| |||||||||| |||||||| ||||||||| CCCAGGGTAA AATGATCTTA ATCAGTAGAG TATAGATACC AAAAACTCTA CTGTCAGCGA 409 ACCACTCAAC GGCAGTAAAG TACACTTAGA ATACTAAATT TAGTAGTTGA AG-AAGAAGT 22295 | || || || ||| |||| ||||| ||| | | | || | || || || | |||| ATCAATCCAC AACAGGAAAG TACACGAAGA AAAATGTGTT TTTTA--AGA AGTAGGAAGA 467 CCATTAATTC TTTTTTTAAA ATGAGAGGAA ATCCCTCAAT TTATAGAAGA CAAAGGGTGG 22355 || || | || |||| TCAGAAAATT CGTTAGTAAA .......... .......... .......... .......... 487 TGCGAAAAGG TTCTTATTGT GCCTTACCGG AAAGGTCACA AACCTTTGGA AAAGTCACAA 22415 .......... .......... .......... .......... .......... .......... 487 TCTTTCAGAA TGATCGTCAC CTTTCATAAA ACTCACAACT TTCCATA-AA AGTCACAAT- 22473 ||| || ||| | | | ||| | | ||| .......... .......... TATTCTGAAG ACTGAATGGT ATTTATAGGC AAGAATAATA 527 TTTTCATAAA AATTGCAACT -TTTCATAAA AGTCACCACT TTTCATCAAA -GTCGCAACA 22531 | ||| ||| |||||||| ||||| || | ||| || || || ||| || |||| TATTCTGAAA GGTTGCAACT CTTTCAGAAT TGACACAACC ATTAATGAAA GGTTGCAAAC 587 TTTCATAAAA GTCACAACTC TTCATAAAAG TCGCAACTCT TCATTTTCCA TTCACGCCTT 22591 ||||| || || ||| ||| | |||| | TTTCA-AATG GTATTGACTG TTCCTGAAAG TT........ .......... .......... 618 TTTTAAAATC CAACACGGAT TACTTTCGCA TAAAATGGGG CTAGACGAAT GGCAAAAGGT 22651 .......... .......... .......... .......... .......... .......... 618 GAAAGACTGC CTTTGGAAGA ACATTGAAGA TGACTCTATT GAAATCTCCT ATATACTATC 22711 .......... .......... .......... .......... .......... .......... 618 ATTGAGCTAT AATGATTTGT CAATTGTGCT CAAGCAATGT TTTCTGTACT TTGATATTTT 22771 .......... .......... .......... .......... .......... .......... 618 TCCAGAAGAT CAAGTGGTCG ATGTTGAGAA CATAATATGG TTGTGGATGG CCGAGGGTTT 22831 .......... .......... .......... .......... .......... .......... 618 CATACCAAAT GGAGAAGAAA GAATGGAGGA TGTCGCTGAA TGCTACTTGA ATGAGCTGAT 22891 .......... .......... .......... .......... .......... .......... 618 AAGACGAAGC TTGATACAAG TGGTAAATAC ATCTTGAGAA AAAGTTACTT TATGCAGGGT 22951 .......... .......... .......... .......... .......... .......... 618 TCATGATTTA CTTCGTGATC TTGCAATACA AAAGGCATCG GAGATAAACT TCTTTAACAT 23011 .......... .......... .......... .......... .......... .......... 618 TTATGATCCA AGAAATCACT CCATATCCTC TTCATGTATT AGACATGCCA TTCATAGTCA 23071 .......... .......... .......... .......... .......... .......... 618 AGGAAAAAGG TACCTCTAAC CTGATCTTTC TAATTTAAAG TTGAGGTCAA TTATGTTCTT 23131 .......... .......... .......... .......... .......... .......... 618 CGATCCAGAT TTTCATAATC TGTTTGAACT TACAGATGTG TTCCGACGTT TATATGTGTT 23191 .......... .......... .......... .......... .......... .......... 618 GTAAATTGGC AACCTCAAGA ATCTACAGAC ACTTTGTGTT GTAAATGAAA CTGGACGCTT 23251 .......... .......... .......... .......... .......... .......... 618 ATACCAACTA CCCCACGAGA CAGCTGACCT AATAAATCTA AGACATTTAG TTGCTCGGTA 23311 .......... .......... .......... .......... .......... .......... 618 TTGAGAACCT CTGGTACGTA TAAACAAACT CACTAGTCTT CATGTTCTTA AAGACATCTC 23371 .......... .......... .......... .......... .......... .......... 618 TTGTGATCAG TGGGAAGATA TTGACCCTGC TTATTTAATC AATCTTCGAG AATTAACCAT 23431 .......... .......... .......... .......... .......... .......... 618 GCGTAATATT TGGAATTATT ACTCCCTAAA CAACATTAGC AGCTTGACAA ACCTAAGCAC 23491 .......... .......... .......... .......... .......... .......... 618 TCTCACATTG TTTTCTGAAG AAGTAATATC ATTCCCATCC CTTCAATTTG TTAATCGTTG 23551 .......... .......... .......... .......... .......... .......... 618 TGAAAAGCTC CAGAAATTGT ATTTAAATGG GAGAATAGAG AAATTGTCTC CGTTTCCAAA 23611 .......... .......... .......... .......... .......... .......... 618 TTCCATCACA ATGATTGTTC TGAGGGACTC AGTACTGACA GAAGATCCGA TGCCTATTTT 23671 .......... .......... .......... .......... .......... .......... 618 GGGAATGTTG CCAAACCTAA GGAATCTCGA ATTGTGTAGA GCTTATGAAG GAGAAGAAAT 23731 .......... .......... .......... .......... .......... .......... 618 AACGAGCAAT GATAACAGCT TCAGTCAACT AAAGTTCATT TATCTTGGTT TTCTTTCAAA 23791 .......... .......... .......... .......... .......... .......... 618 GCTAGAAAGA TGGAATTTAA GCACAAACGC GATGCCTCTC ATTAAAGCTC TTCATATCGA 23851 .......... .......... .......... .......... .......... .......... 618 TCATTGTCCG AAGCTCATGG AGATTCCAGA GAGAATGAAA GGCGTGAAGC GTATTTGATT 23911 .......... .......... .......... .......... .......... .......... 618 ATAGCAAAGG TAAATATACA AACAAATCCT AATCTTACAT AATTTTGTAG AAAAATCACC 23971 .......... .......... .......... .......... .......... .......... 618 TATAGGAGTT TTTTTTCCAA ACATATATGA AATCTCGTGT ATGAAAACAG CGTAAAATTC 24031 .......... .......... .......... .......... .......... .......... 618 ATATGAAATA TATCTATCTC ACTTAGAGCT TAGAATTTCG TTCATAATTT TTGTGTATGA 24091 .......... .......... .......... .......... .......... .......... 618 ACAATATATA AACTTTGTAT AAAGTTCATT ACTGAAAATC TCATACAACT ACAACAACAT 24151 .......... .......... .......... .......... .......... .......... 618 TGTATACAAT ATTCATATCA AACTAAATAC AACTACAATA CCAGCAAAAG ATATGTTGCA 24211 .......... .......... .......... .......... .......... .......... 618 GACTGCAGTG GATGAAGTTG CTCCTTCCAG GTCTCGGGTT TAAATCCTCG GTATGGAAAA 24271 .......... .......... .......... .......... .......... .......... 618 ATTATTGGTA TGGAGCACTC TCCTCAAATG GCCCCTACGT GGCGTGAATT CGGGATAGTC 24331 .......... .......... .......... .......... .......... .......... 618 AGGCTCCCAC GGATACCAGA CACCAAATGG GAGATCAGAA AAAAATACAA CTATGATAAC 24391 .......... .......... .......... .......... .......... .......... 618 ATAGTAAACT TAAAAACAAT TTACATATAA CTCATCCGGC ATTATATGAT TTTTGATACA 24451 .......... .......... .......... .......... .......... .......... 618 ATTCGTCTGT AGTTTTGAAT TTGAATGAAC TAAAATTACA ATAATCTCAA ATTTTATGTG 24511 .......... .......... .......... .......... .......... .......... 618 TTTCTCAAGA GTACAACACA ATGAATCTTC TTAAAACTAT CATAAAATCC ATCCAAGGTT 24571 .......... .......... .......... .......... .......... .......... 618 ACAACACAAA AACTCTAGAT TTGTCGGAAA AGATGGCAGA AAGAGATCTA GAAAATCACC 24631 .......... .......... .......... .......... .......... .......... 618 TTCGTAAGCT AATAACAAAA CACAAATACC TTGTGGTGAT TGATGATATG TGGCAGCGAG 24691 .......... .......... .......... .......... .......... .......... 618 AAGCGTGGAA GAGTTTGAAA AGAGCATTCT CGGATAGCAA TAATGCCAGC AGAGTTATTA 24751 .......... .......... .......... .......... .......... .......... 618 TTACCACTCG CAAAGTGGGT GTCGCTGAAA GAGCAGACAA CAGAGGTTTT GTCCATGAAC 24811 .......... .......... .......... .......... .......... .......... 618 TTTGTTTCCT AAGACAAGAA GAAAGTTGGG AACTCTTTTG TAGGAAACTA GTTGATGTTC 24871 | ||| .......... .......... .......... .......... ...GCAACCT .......... 625 GAGCAATGAT TCCAGCGATG GTAAGTCTAG TTAAGGATAT GATGGAAACT ATAGAGGCCT 24931 .......... .......... .......... .......... .......... .......... 625 ACCTCTTGCA ATTGTTGTAT TGAGTGGACT ACTTTAGCAT GAAAGGGGAC AAGACGAATG 24991 .......... .......... .......... .......... .......... .......... 625 GCAAAAAGTT AAAGACTGCC TTTGGAAGGA CATTGAAGAA GACTCTATTG AAATCTCCTA 25051 .......... .......... .......... .......... .......... .......... 625 CATACTATCA TTAAGCTTCA ACGATTTTTG TCAGCTACGC TCAAGCGGTA TTTTCTGTAC 25111 .......... .......... .......... .......... .......... .......... 625 TTTGGTATTT TTCCAGAAGA TCAAGTGGTC GAGGCCAATA ACATAATACG GATGTGGATG 25171 .......... .......... .......... .......... .......... .......... 625 GCAGAGGGTT TCACCATACC AAGAGGAGAA GAAAGAATGG AAAATGTCGC TGAAGGCTTG 25231 .......... .......... .......... .......... .......... .......... 625 TTGAATGAGC TGATAAGACG AAGCTTGGTT CAAGTGGCTA AAACATTTTG GAAAAAAGTT 25291 .......... .......... .......... .......... .......... .......... 625 ACTGAAAATG TAGGGTTCAT GATTTACTCC GTGATCTTGC GATATAAAAG GCATCCGACA 25351 .......... .......... .......... .......... .......... .......... 625 TAAACCTCTT TGACATTTAT CATCCAACCA TTCTTAGTCA AGGAGAAAGG TACCACTCAC 25411 .......... .......... .......... .......... .......... .......... 625 TTGATCTTTC TAATTTGAAG TTGAGGTCAA TTATGTTCTT CGATCCAAAT ATTTGTAATG 25471 .......... .......... .......... .......... .......... .......... 625 TGTTCCAACA TATAGATGTG TTTTGATATC TATATGTGTT GTACTTGGAA ATTAAGAAGG 25531 .......... .......... .......... .......... .......... .......... 625 TGTTATACCT TTGTGTTAAT ATTTCTAGAG AAGAAGTTGT ACATGAAGAC ATTCAAGTTC 25591 .......... .......... .......... .......... .......... .......... 625 ATCAACTTGG CTTCTGCAAC ACTTGGATTG TTTCAACTTT CTCCTGTTTT TTTTTTTTTT 25651 .......... .......... .......... .......... .......... .......... 625 TTTTTGCTTG TTTTTAGTGT GGGGAATTGG TTCAAACAAT TATTTTTTTT GGGATTCTAT 25711 .......... .......... .......... .......... .......... .......... 625 TCTAAAATGA TTTTGTGATG ATTTAATTAA GGAAAAAAAG GCTCAAATAT GTCGTCAAAC 25771 .......... .......... .......... .......... .......... .......... 625 TATTATAAAC GACTCATTCA TGTCATTCGC CATTACAAAA CAGGTTTCAT CTTATGCAAC 25831 .......... .......... .......... .......... .......... .......... 625 TCTTGCAAAA ACAGCTGAAT CTAAGAAGTC GTTAAACTTG AACATTAACA AAACTCATTT 25891 .......... .......... .......... .......... .......... .......... 625 TCGCCATCGG TCGTTGAAAG TTTGATTCAT CTATGTCATT TTACCTAACA GGATTCTGAT 25951 .......... .......... .......... .......... .......... .......... 625 GTCATCTTCT TGAACTTTTG ATAAAAAATG ATCGTTCAAG TTTCATAAGC TCCAAAAATA 26011 .......... .......... .......... .......... .......... .......... 625 CTAAAGCTCA CACAACAATC AACGAACGAC CAGGTGATCG ATCTGTCAGT CTCAGCAAGT 26071 .......... .......... .......... .......... .......... .......... 625 CATAAATGAC TTGGGATCGC TATAGGAATG CTCTAAACGA TGCACAGAAG ATAAAATACT 26131 .......... .......... .......... .......... .......... .......... 625 AAAAATGACA AGAAGGGTCA TTACAAAATC ACATGAATAA GTCGTTTCTC AAACGAAATT 26191 .......... .......... .......... .......... .......... .......... 625 GATATAGAAG AAACAAACTT TTAAATTTTG GTGACACTAA ATTATGGATC AGTAAATTTT 26251 .......... .......... .......... .......... .......... .......... 625 ATTAAAGGGA ATAAAATTGT CACTAAAGCT TTGAAGGGTA TTTTCTTTCA TATAAATTTT 26311 .......... .......... .......... .......... .......... .......... 625 ATGCAACTAC AACAACATAC AACACAATTT TTATATAACT CATCAATCAT TATACAATTA 26371 .......... .......... .......... .......... .......... .......... 625 TCAAATTACT TTAATATAAT TTTGAATTCC AACGAAATAA AACTAAAATT CAATACAAAA 26431 .......... .......... .......... .......... .......... .......... 625 GTTGCTCAAT TTTTACTAAA TAAATTTCAT TTTGAGAAAT CACTAAAAAT TAATTTTGAG 26491 .......... .......... .......... .......... .......... .......... 625 AACTTGAACT TCAAGTTCTA ACAAAATCTT TTATGGAATA ACCTCCATGG ATGAATTCGA 26551 .......... .......... .......... .......... .......... .......... 625 ATTAATTTGT GCTGACTTAT CGAATATTTT ATATCTTTCT CTTCAAAGTT ACAAAATGCA 26611 .......... .......... .......... .......... .......... .......... 625 TCTTCAAATT GAAAAGTCAT GCTCCTATTT TTCCCTATAG ATTCCCCAAA CAAGGAAAAT 26671 .......... .......... .......... .......... .......... .......... 625 TATCATTTAA AGATTAAATT TGGAATTTCT TATTTGACTA TTAATAATAT AATTTTTTAA 26731 .......... .......... .......... .......... .......... .......... 625 CCACTATGAA ATTTTTAAAA TCATAAATTT TAAAAATCTT TCGTTCCTAG TTAAAATGTC 26791 .......... .......... .......... .......... .......... .......... 625 GTAACTAGTC TTTCCATAAA ACAGATGTAC AATTAATTAA TTAGCTAATT AAGTGATTTA 26851 .......... .......... .......... .......... .......... .......... 625 GGTGGAGGAA CAATTAAACA AACTCTTCTA ATCTGAATAT TTAAATGCCT TTAGTCTAAT 26911 .......... .......... .......... .......... .......... .......... 625 ATGAGATATC TTTTTAAATA GAGGGAAAAG GGTCTGATAT ACCCCTCAAC TTTGTCATTT 26971 .......... .......... .......... .......... .......... .......... 625 GGAGTTGATA TACCCCTCGT TATAAAAGTG GCTCATATAT GCCCTTACCG TTATATAAAC 27031 .......... .......... .......... .......... .......... .......... 625 GGCTCACATA TACCCCTACC GTTACAAAAT GGCTCACATA TATCCTTCAT TTCACGAAAG 27091 .......... .......... .......... .......... .......... .......... 625 CTAAAAAATT AGTTTTAAAT TTATATTTAT TACTTCTAAA AAAAATTTAA AAATTATTTA 27151 .......... .......... .......... .......... .......... .......... 625 GGGGTATATA TGATTCTTCT ATCAAAGTTC AAGGTATATT TTAATTTTTT TTCATATATT 27211 .......... .......... .......... .......... .......... .......... 625 AATTATTTTT TGACTTCTTT TATTATAATT ATTTGAATTT CTTATTCTTA TTTTGTTTTT 27271 .......... .......... .......... .......... .......... .......... 625 TCTTTCATTC CTTAGTTTAA AGAATAAAAA ATTAAACTAT TTTTTTTGTG TGTATTGTAA 27331 .......... .......... .......... .......... .......... .......... 625 TTTAATTTCG TATTTGAAGA AAAAATTTGG TCATCTACAA TAAGTTTTAC AAGAATATTA 27391 .......... .......... .......... .......... .......... .......... 625 GTGAAACATA AATAAATTTG ATTATCAAAA TAATAATTAT AAACTAGTCA TTGAAACAAA 27451 .......... .......... .......... .......... .......... .......... 625 AAAAAAAGTC AAAGAAAATA TGTTTGACGA GGATTGGGAT TATATTTTTT AGAAAAAAAA 27511 .......... .......... .......... .......... .......... .......... 625 TAATAAAAAT TTAGATTAAA ATTATTTTTT TTTCATTTCC GTTAGAGGAA AAGAGTATAT 27571 .......... .......... .......... .......... .......... .......... 625 CTGAGTCATT TGTTTACAAG TAGGGGTATA TATGAGTCAC TTTCATAATA AGGGGTATAT 27631 .......... .......... .......... .......... .......... .......... 625 CAGCTCTAAA TGACAAAGTT GAGGGGTATA TCAGACCCTT TTCCCTTAAA TAAATAATAG 27691 .......... .......... .......... .......... .......... .......... 625 TTTTTGGAAA TGTATAAGGC CAAAATCATT AGCACAAATA CCCTAATTTT GGGGTGAGTT 27751 .......... .......... .......... .......... .......... .......... 625 TTAAGCTTCA TATAAATGTG TTTTAACTTG ATCTCATTTC ACATTTATGC CCTTCAATTT 27811 .......... .......... .......... .......... .......... .......... 625 TAGGTCTGCA CAG 27824 || | | ||| ...TTCAGAA CAG 635 hqPGS_C04HBa0127E11.1+_SGN-E538064+ (21641 21672,21969 22315) ******************************************************************************** EST sequence 20 +strand 407 n (File: SGN-E268499+) 1 TTATAATTGC AGACTTAAAG GAGTATAAAA TCACTAAGAT TTTTGTCTCC ACCAAAAATA 61 CAGATTTAAA TAATTTCCTT AAGATTGTTG CCAATCTGTG TTAAGAAAAT CAGAAATTAC 121 TGGTTGTGAT AAATCATTCA GAAACACGAA GTAACTGAGA TTTTTAGAAC CACTAAATAA 181 GATGAACATA AATTTATTTG TAAAAATAAT TTAATCTGTA AAACTTACCA GAATCTTGAA 241 TACTCTTTTT GATAATTTAG GAAAAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA 301 GGAAATTATT CCCCTGTAGT ATCCGAGGTT TGATTTGGAA TATAACCTCC CAGGGTAAAA 361 TGATCTTAAT CAGTAGAGTA TAGATACCAA AAACTCTACT GTCAGCG Predicted gene structure (within gDNA segment 18826 to 23421): Exon 1 21641 21672 ( 32 n); cDNA 113 141 ( 29 n); score: 0.719 Intron 1 21673 21968 ( 296 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.59) Exon 2 21969 22235 ( 267 n); cDNA 142 407 ( 266 n); score: 0.749 MATCH C04HBa0127E11.1+ SGN-E268499+ 0.749 299 0.735 C PGS_C04HBa0127E11.1+_SGN-E268499+ (21641 21672,21969 22235) Alignment (genomic DNA sequence = upper lines): GAAACTACTT GATGTTCGAT CAATGGTTAC AGCAATGGAA AGTCTAGCTA AGGATATGGT 21700 |||| |||| | ||| ||| ||| || | || GAAATTACTG GTTGT--GAT AAATCATT-C AG........ .......... .......... 141 GGAAAAGTGT AGAGGCTTAC CTCTTGCAAT TGTTGTATTG AGCGGATTGT TGTTCATCTT 21760 .......... .......... .......... .......... .......... .......... 141 GTATTCCAAA CATACTTAGA ACAAAACTTT GAACATCTTT GTAAGAAAAC AAAGTTTAAG 21820 .......... .......... .......... .......... .......... .......... 141 AACATTTTCA CAACTAGAAA ATTAAAACTA GTAGCGAAAC TAGAATCAGA AACAGATTTT 21880 .......... .......... .......... .......... .......... .......... 141 AAAAAAAATA TACGAAATAT TTTTCTTAAA GAGGAATTGT TGTTAATATG TGTCTAAAGA 21940 .......... .......... .......... .......... .......... .......... 141 ATCTTACTGA TTCCAACAAA CTTTGCAGAA ACACGAAGTT ACCAAG-TTT AATGAACCAG 21999 || ||||||||| || || ||| |||||| .......... .......... ........AA ACACGAAGTA ACTGAGATTT TTAGAACCAC 173 TGAAGAATA- GAAGA-ATA- GAAGAACTGA AATTAATTCA CAAATCTAAA ATTTGTAAAA 22056 | || || | ||| | | | | | | || ||||| | | | |||| | || | | TAAATAAGAT GAACATAAAT TTATTTGTAA AAATAATTTA -ATCTGTAAA ACTTACCAGA 232 CACGTACCAG AATCTGAAAA AAAATTTAAT AGGAAAAAGA TCAAGTCCAC TGAATTCACA 22116 | | | | ||| | || || | |||||||| | |||||||||| |||||||||| ATCTT-GAAT ACTCTTTTTG ATAA-TT--T AGGAAAAAAA TCAAGTCCAC TGAATTCACA 288 GTGTCCCCTT AAGGAAATTA TTCCCCTCTA GTATCCGAGG TTTGATTTGG AATATGACCT 22176 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||| |||| GTGTCCCCTT AAGGAAATTA TTCCCCTGTA GTATCCGAGG TTTGATTTGG AATATAACCT 348 CCTAGGGTAA AATGATCTCA ATCACCAGAG TATAGATACC AAAAACTCCG GTGTCAGCG 22235 || ||||||| |||||||| | |||| |||| |||||||||| |||||||| |||||||| CCCAGGGTAA AATGATCTTA ATCAGTAGAG TATAGATACC AAAAACTCTA CTGTCAGCG 407 hqPGS_C04HBa0127E11.1+_SGN-E268499+ (21641 21672,21969 22235) ******************************************************************************** EST sequence 96 -strand 662 n (File: SGN-E214138-) 1 AAAAAGGAAG ATATGTAAAG TTNGGCAGCC ACATGTAGGT TCACACTAAT CGAAAATTCA 61 GCAACACGAT GCNTAAGATC ANCCTCGTTA GGAAAAGCTT TATTATGCAG ACCCAACTTT 121 GCAGGGGGGT CAAGATTGTA CATTTTCTTT AGGCATTTCT ACGTTGATTT GGACAATGGA 181 ATCGATTACA ACAATGTGTG GACTAAACTA AGAATGAGTA TTGGAGGGCA ACTTGTGAGA 241 ATTCATACGT GGACTCCTAC TTTCAGACCG GATGAAGAAA CACCGATTGT TTCTATTTGG 301 GTAGCCTTTC CGGAGCTCCC TTGGCATTGT TACTACAAGG AATTTTTGAC TGTTCCACTC 361 TCCTCCATTA GAGAAGTCCT ATACCTAGAC ATGGCATCTA CTCAAGACAC TAGAGGAAGT 421 CTAGCCAGAG TAAAAATGAA GGTTGATCTC ACTCAAGACA GGCCCTCCCG TGTGGATTGA 481 CTATGATGAA GAAGATATTA CCGTTGGAAG GTGGCAAGCT GTGCGATATC AAAATATTCC 541 ACACTATTGC ACTCATCTCG TATTTCAAAC ATACTTAGAA TAAAACTTTG AACATCTTTG 601 TAAGACAACA AAGTTTAAGA ACATTTTCAC AAATGAAAAA TTAAAACTAG AGACTAGTTC 661 TC Predicted gene structure (within gDNA segment 14763 to 22733): Exon 1 15811 15818 ( 8 n); cDNA 528 535 ( 8 n); score: 0.750 Intron 1 15819 20094 (4276 n); Pd: 0.743 (s: 0), Pa: 0.236 (s: 0) Exon 2 20095 20111 ( 17 n); cDNA 536 552 ( 17 n); score: 0.471 Intron 2 20112 21753 (1642 n); Pd: 0.305 (s: 0), Pa: 0.000 (s: 0.94) Exon 3 21754 21850 ( 97 n); cDNA 553 649 ( 97 n); score: 0.928 MATCH C04HBa0127E11.1+ SGN-E214138- 0.928 122 0.184 C PGS_C04HBa0127E11.1+_SGN-E214138- (15811 15818,20095 20111,21754 21850) Alignment (genomic DNA sequence = upper lines): ATTAAAAGGT TCTATTGCAA TCCCATCATC AATGAATGTT TCATTTTCCT GCAACCAGAG 15870 || |||| ATCAAAAT.. .......... .......... .......... .......... .......... 535 ATATTCCATT AGTTACACCA GAAAGGAATA CAAGAAATAC AAAGTTTAGC CATAGAGCAA 15930 .......... .......... .......... .......... .......... .......... 535 TTAGAATATG CAAAATTTGA CATTAATGAT AATTCCAAGT ACTTCAGTTT GTTTATAGGC 15990 .......... .......... .......... .......... .......... .......... 535 TGGAGAGCCG AACCAAAGAA CAAATAACAA TATAATTCCA CGAATTTAAT GTGACAGCAC 16050 .......... .......... .......... .......... .......... .......... 535 ATGAAGCAGA AATAATGAAA TTTAATTAAC ATTTATGTTT TGAGAGTTTA AGTAAAAGAA 16110 .......... .......... .......... .......... .......... .......... 535 ATAAAATGCT CGGAAAATAA AACAGAAGGA AACAAAGGAA GTAAAGCTAC AAATTTTATT 16170 .......... .......... .......... .......... .......... .......... 535 TCCATTGTTT CATTGGCGAG GGAATTATGA AGAACAGGAA AAATTTATTC AAGGGAACTC 16230 .......... .......... .......... .......... .......... .......... 535 AGATAAATTC TTTTCTTCTT TGTAATCCTA TTCTCATCTC TATGCAAATT AAAGTACGTG 16290 .......... .......... .......... .......... .......... .......... 535 CAGAATTTAA ATCTTACCCA TTTTCTATTT GTAAAGTTCA AAAACCCACA GTTCATAAAG 16350 .......... .......... .......... .......... .......... .......... 535 TCCAAGGAAG AACTCTACAT AAGATAGAAT GAGACAAGCC TATTGGACAC AGAAACAACG 16410 .......... .......... .......... .......... .......... .......... 535 ATTCATGCTC AGTGAATTTA AAAGTGAAAA GTGCAAAAAA AGCGTCTGCG AGGCTTGAAA 16470 .......... .......... .......... .......... .......... .......... 535 TGAATAGGAG AGAAGTAAGG CACATGCTTT ATTAAGTGAA GCGCACAATT ATTTGATGAT 16530 .......... .......... .......... .......... .......... .......... 535 GATTCCTTTA CACATGGCAT GCAACCTTAT GCTATTCCTT TTGATGAGCC GCTATATGCT 16590 .......... .......... .......... .......... .......... .......... 535 AAGAAAAAAC ACCATTCTGT CTCCTTGACC TTTGTTTCAA GAGCATAAGG ATTGATATGT 16650 .......... .......... .......... .......... .......... .......... 535 ATTAGTGGGG TTTTTAAAAT GAAGTTACAG ATGGTCCCTA TTTTGCTTAC GTTACTACTT 16710 .......... .......... .......... .......... .......... .......... 535 ACTACTTGGG GAATATAATT AGCAATCATG ATTATTTATG GTTTTCAATT GTGCATGAGT 16770 .......... .......... .......... .......... .......... .......... 535 ACCCATATCT CAGCTCTTTT AAAGAAGATT ACCCATATCT AAGTTGTTCT AGCTAAACAC 16830 .......... .......... .......... .......... .......... .......... 535 GCAGCACAAA TCATGCCAAG CCCCAAAAAA GTTTGTAATA ATCCTAGTAT CACTTCCTTA 16890 .......... .......... .......... .......... .......... .......... 535 TCAAGAGATA TGAAGTAGAC ATCAGATATC CACAAAGTAC CTAACTACAA TCAAACAATT 16950 .......... .......... .......... .......... .......... .......... 535 ATGGAATAAC AGATATTGGA AGGACAAACC TCATATTCCA CTTCTGCCCG CGATATGTCA 17010 .......... .......... .......... .......... .......... .......... 535 GCTATTTCAC CTTCGTTTTC TTCATCAAGG AGTTCCGCTG TTATTTGATT CCGCCGTGCC 17070 .......... .......... .......... .......... .......... .......... 535 GAACGCTCTT TGGCTGCATT GCGAGGATCT GTCCGCCCAC TAGGTTTATC TTCACACCCA 17130 .......... .......... .......... .......... .......... .......... 535 TCAATCGTGG TATCGCCCTG CTTTGCCTTC TTACCCTTTG GGAACCTTAC ACGCTTCTGC 17190 .......... .......... .......... .......... .......... .......... 535 CTGTGATGTT GAGGAAGAAA GCAACATGTC AATGCAAACA TCCTTAAAAT CCAGCATCAT 17250 .......... .......... .......... .......... .......... .......... 535 AAATGAAACT ATTTTGAACC CAACAAATGA GGTTGTCATA GAGCATGGCA GACGTCACAT 17310 .......... .......... .......... .......... .......... .......... 535 GGAAAAAAAA AACGCTATTT GAAGTTGTAT TACTTGCTAT TGCTGTCTCA TGAAACACAT 17370 .......... .......... .......... .......... .......... .......... 535 TATCTTTACA AGGAAAATAA CAGTAGGTAA AAAAGATCTA TTTTTTCTCG TACTAAACTC 17430 .......... .......... .......... .......... .......... .......... 535 ATGACAGTCT CAACAACAAA ATACAACCTC TAATCTGAAA AAGAAAGCAG TCTACTTTAT 17490 .......... .......... .......... .......... .......... .......... 535 CTTCAAAGAC AAACTATTGA GCACTGGAAT GAAATGATCA CAGTTAGAGT AAATAGATAT 17550 .......... .......... .......... .......... .......... .......... 535 AGAGATTACA TATAACTAAT CCAATTAGTT TGGGCATGAG GCATAGTCAC TGTATAATTC 17610 .......... .......... .......... .......... .......... .......... 535 CTTAAATCTC CAACAAATAA AGTATTTTCT TGCATAGTTC TCTCAAGGCC AAACACACCC 17670 .......... .......... .......... .......... .......... .......... 535 TTCTTTATTA GACATTTTCT AGGTACTAAG AATACACAAT CCACCCATTC CCACTAGATT 17730 .......... .......... .......... .......... .......... .......... 535 TTTGCTCCAG GTTCACATCA TATATGAAAT CAACGGTAAT TCAGATTAGG AAAAAACAAG 17790 .......... .......... .......... .......... .......... .......... 535 CTAATAGAAT CTGGGCGCAT TTGCAGAATA ACAAAAATAG ATAGCAGCTG AAAGAAAGCA 17850 .......... .......... .......... .......... .......... .......... 535 AATCCAAGTA CATACTCCTG AACTCCTCTG GGAAGCTCCT AAAATTCTTA CAATAATGAC 17910 .......... .......... .......... .......... .......... .......... 535 ATAATAAATC AATCCCAGCA GAAGCAAAAA ATACTATGTG TATTCTCCCT ATCTATTTAA 17970 .......... .......... .......... .......... .......... .......... 535 GCCTCAATTG ACACAGTAAA GTGATATCTA TGTGGATGGG AGGTAGTAGA GATCCCATAG 18030 .......... .......... .......... .......... .......... .......... 535 GATAGAATTA ATTGAGTTAT AAAAACAAAA ATGAGCTTCC TTACTTATTT ATCTATTTTT 18090 .......... .......... .......... .......... .......... .......... 535 ATCTTTCTAT TGATACAAAA TACTCCCCCT AGTTCACTTC TTTCGTTTTT TAGACAACTG 18150 .......... .......... .......... .......... .......... .......... 535 TAGTTACTAG ACCAGCTTAT GCGCACCTTA ACTAATTACA TAGATATCTG TCGCTCCCCA 18210 .......... .......... .......... .......... .......... .......... 535 CCAAAACAGC TATAAAGTAA CTCTATCCTC AAGGCTAGGA CAGGTAGAAA GAAATCACTT 18270 .......... .......... .......... .......... .......... .......... 535 TTCTTCTCTA TGTTGGAATT TGAACCTTAG ACCTCATGGT TCTCAACTCA CTTCATTAAC 18330 .......... .......... .......... .......... .......... .......... 535 CACTAGATCA CACCCTTCCT TATTCACTTT TTTATGAAAT CAATGTCATT AAATTTCAAT 18390 .......... .......... .......... .......... .......... .......... 535 GGTAAAATAA ATTGGTTTCC TTTCGCATTA TGTTTTTATT ATGATTGTGG TGTTCACGCC 18450 .......... .......... .......... .......... .......... .......... 535 AGTTTTCCCA CACCTCAACT AATTCCACCT CTCACCATTA ACAACTATCA GGTAACTCTG 18510 .......... .......... .......... .......... .......... .......... 535 TCCACCAAAA CTAGGACAAA TAGAAAAAAA TCATCTAGCA TTTTTGTCTC TACTAGAAAT 18570 .......... .......... .......... .......... .......... .......... 535 TGAACATTAG ACCTCATGAT GCTCAACCCA CCTCCCTTGA CCACTAAGCC ACACCCTTTG 18630 .......... .......... .......... .......... .......... .......... 535 AGAAGTTTTT TGTTAATTTT AATGACCTTG GTATCCAAAT ACATTGGATA CGTCCCACCT 18690 .......... .......... .......... .......... .......... .......... 535 CCCACCAAAT AACTTTGTTG TCTTCCCTGA GTTTTATAAG ACCTCAGAAT TCTCAACCAC 18750 .......... .......... .......... .......... .......... .......... 535 TTCATTAATC ACTAAGCCAC ACCCTTGGGG TTTCACCACT ATGTTTCAAA CATATACAAA 18810 .......... .......... .......... .......... .......... .......... 535 ATATTATTTA CTAAGAAATC ACAAACTTAC AGCTCAAATT TTATATTCCG AAATCAATAT 18870 .......... .......... .......... .......... .......... .......... 535 AACAAATGAA TATGAGCTTT CATCTGTGCA GAATCCCTAA GTATGTTCAG AATAAATTAG 18930 .......... .......... .......... .......... .......... .......... 535 GGCACAAAAT CACATGAAAT TTTTCAAAAA TAAAAAATAA AAAGAAAGAA GGAAGGAAAT 18990 .......... .......... .......... .......... .......... .......... 535 AGTTACTCTG GAGCTTTATT GGAGTCATCG TCCTCAACGA AGGGACGTTT GGCACGTCGC 19050 .......... .......... .......... .......... .......... .......... 535 GATGAACCTT CTTCCATGGC GTAATCGGCA ATTGATATGA AGGATTCAGA AAGGAAAAAA 19110 .......... .......... .......... .......... .......... .......... 535 AATGAAGGGG CAAAGTGAAG AGAGAGCGGT GGTACTGGTA AACATCAAAA AAAATAATAA 19170 .......... .......... .......... .......... .......... .......... 535 TAATAAATTC TATCTTACAA ACTATAATAC CTTTTTTAAA TTGATAAATA TCTAAAATTA 19230 .......... .......... .......... .......... .......... .......... 535 ACATTACCAA TATTAATCTT ATTGGATAAA TTCAAATAAG TTATTGATAA TATAGAAAAA 19290 .......... .......... .......... .......... .......... .......... 535 TAATATTATA AATTATTAGT TGAGAAATGT GACAACACAA AAAATATACT AATAGCTGAG 19350 .......... .......... .......... .......... .......... .......... 535 ATAATTTGTA AAATAAAATT ATCATTTTAC TTTATTATGG ATATTCATGT CTACTAGTCA 19410 .......... .......... .......... .......... .......... .......... 535 TTTTTATCAT TAATTAATAT TTAGGATGAT GATTATTATT ATTATTATTA TATATATATA 19470 .......... .......... .......... .......... .......... .......... 535 TATATATATA TATATATATA TATAAAAGAG ATAAAAATGT AAGATCAAAT TGTTTCATAA 19530 .......... .......... .......... .......... .......... .......... 535 ATATATAGAA TAAATTACAA TTTACAAATA TTAATATTTT TTTAATTTAA TCACTCTGTC 19590 .......... .......... .......... .......... .......... .......... 535 ACAGTTTTGC ATAGATAAAA ATGATCGATA AATTATTTCG TTCGACATTT GCACAAGGAT 19650 .......... .......... .......... .......... .......... .......... 535 TTTACTTTTA TAAAAATGAT ATTTCAAAAA AATTGTATAA CTAATTATTT TCATAAATAA 19710 .......... .......... .......... .......... .......... .......... 535 ATTACTTATG TTGAATAGTT TAATTTGGTT ATTAGTTCAC TAACTCCTTG TTATAAAGAT 19770 .......... .......... .......... .......... .......... .......... 535 ACAATTTATT TCATTTTAAT GGTATTATTG AATAAGTAGT ATTATAGGAT TGTTTTGGTA 19830 .......... .......... .......... .......... .......... .......... 535 TTTCAATTTT TATTTTTTTT TTGTTTAACT CAATATTATA GGATTATTTG GTATTTCAAA 19890 .......... .......... .......... .......... .......... .......... 535 TATAATTTTT TGTTTAAGTC AATATTCAAA TTTTGTGTAT AAAAAGTACA TAAATTTGGT 19950 .......... .......... .......... .......... .......... .......... 535 ATAAAATATG TATATAACTA TATAAAATTT GTATGAAGCT CATGTTAGAT ACTATTGCAT 20010 .......... .......... .......... .......... .......... .......... 535 ACAACATTCA TATCAAACTA AATACAACTA CAATACCAAC AAATGATATG TTGCAGTAGA 20070 .......... .......... .......... .......... .......... .......... 535 TGAGTTACTC CTGTCGGGTT TCAGATTCGA ATCATCAGTA TGTAAAAATT CTTGATAGAG 20130 |||| | | | | .......... .......... ....ATTCCA CACTATTGCA C......... .......... 552 TGTGTTTTCC CTCAAATGAC CCTACGTGAC ATGAATTTGG GAAAGTCAAG CTTCAGTGGA 20190 .......... .......... .......... .......... .......... .......... 552 TACTTAACAC TTAGTGAGAG ACTAGAAAAA AAAATACAAC TATTATAAAT ATACCAAACT 20250 .......... .......... .......... .......... .......... .......... 552 TAAAAAATAA TTTACTCATA ACTCATCCGC CATATTATGA TTATCATTTG ATTTTTGATA 20310 .......... .......... .......... .......... .......... .......... 552 CAATTGTATG TAATTTTGAA TTTAAACGAA GTAAAATCAA AATTTCAATT CGAAACTAAT 20370 .......... .......... .......... .......... .......... .......... 552 TCGAATTTTA CCCAAATAAT CTCAAATTTT ATATTATTAG TCTCCTCGAA ATTCCATTTC 20430 .......... .......... .......... .......... .......... .......... 552 TTTGGAGAAA TCACCAATTG AAACGAAAGT TTTCCTATAG ATTCCCCAAA CAAGGAAAAT 20490 .......... .......... .......... .......... .......... .......... 552 TAAAAAGAAA TCCTTAATTA TAATCTGATT TCGTTCGATA AAACTTTTAA AATAATGTTT 20550 .......... .......... .......... .......... .......... .......... 552 GTTCTAGGAA GACTTGTTGT TGAGTTTCTT TCTGAAATAG TCTATCTGCC TCCACGAGGT 20610 .......... .......... .......... .......... .......... .......... 552 ACTCGTACGA TCTACATACG CTTTAGCTTT TAATTTTTGT CTAAAGACAC AACTTGTGTC 20670 .......... .......... .......... .......... .......... .......... 552 ACTGAATTTA TAAAGTATAA CTCGTGTCAT GCAATTTTAA ATTCTTGCCT CAACACTTAC 20730 .......... .......... .......... .......... .......... .......... 552 CAGAGAATAT ATACTTTTCT TTACTATTAA CCTTAACTCT TTCTGCTTTA AGACTTTTTC 20790 .......... .......... .......... .......... .......... .......... 552 TAATGTTGGA TTTTCTTAAG CTTTAAATAC TCATTTCCAT CATAACAATT ATCAAACTCT 20850 .......... .......... .......... .......... .......... .......... 552 CAATCTACTG CTATACTTGA GACTTACAAC TTTGAGGCTG GTAAATGTGC TAGTCGTCTC 20910 .......... .......... .......... .......... .......... .......... 552 AAGGCTTGCG TTTGCATATA TAGGAAGGAG AAGAAATTAT AGTATGTGGC AGAGGAGATT 20970 .......... .......... .......... .......... .......... .......... 552 CAATCACTCA AGCAACGAAT CATGGATATC TCTCGCAAAC GAGAGACTTA TCGTATTACA 21030 .......... .......... .......... .......... .......... .......... 552 AATATCAATT CAGGAGATCA AGGGCCAAGT AATCAGGTTA CAATATTGAG GAGAACTACC 21090 .......... .......... .......... .......... .......... .......... 552 TCATATGTGG ATGACCGCGG TTACATTTTT GTTGGATTTC AGGAATGTTG TACAAACATT 21150 .......... .......... .......... .......... .......... .......... 552 GCTAGTTGAA ATTCTCAAAC CAGAGCCTTG TCGAAGTGTC CTCTGCATTT ATGGCATGGG 21210 .......... .......... .......... .......... .......... .......... 552 CGGTGTAGGC AAGACCACTC TTGCGAGAAA CCTCTACAGA AGTCCTAGTA TATAGTCAAT 21270 .......... .......... .......... .......... .......... .......... 552 ACCTTCCCTA CACGTGTGTC GATATGTGTT TCTCAAGAGT GCAACACAAT GGATCTTCTT 21330 .......... .......... .......... .......... .......... .......... 552 AAGACTATCA TAAAATCCAT CCAAGTTTGC ACCAACGAAA CTCTTGATTT GTTGGAAAGG 21390 .......... .......... .......... .......... .......... .......... 552 ATGGCAGAAA GAGATCTAGA AATTTACCTT CGTAAGCTAT TAACAAAACA CAAATACCTT 21450 .......... .......... .......... .......... .......... .......... 552 TTGGTGGTTG ATGGTGTGTG GCTAATAGAA GCATGGAAGA GTTTGAAAAG AGCATTTCCG 21510 .......... .......... .......... .......... .......... .......... 552 GATAACAATA ATGGCAGCAG AGTTGTTATT ACCACACGCA AAGTGGATGT CGCTGAAAGA 21570 .......... .......... .......... .......... .......... .......... 552 GCAGACGACA GAGGTTTTGT CCATGAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT 21630 .......... .......... .......... .......... .......... .......... 552 TCTTTTGTAG GAAACTACTT GATGTTCGAT CAATGGTTAC AGCAATGGAA AGTCTAGCTA 21690 .......... .......... .......... .......... .......... .......... 552 AGGATATGGT GGAAAAGTGT AGAGGCTTAC CTCTTGCAAT TGTTGTATTG AGCGGATTGT 21750 .......... .......... .......... .......... .......... .......... 552 TGTTCATCTT GTATTCCAAA CATACTTAGA ACAAAACTTT GAACATCTTT GTAAGAAAAC 21810 |||||| ||||| |||| |||||||||| | |||||||| |||||||||| |||||| ||| ...TCATCTC GTATTTCAAA CATACTTAGA ATAAAACTTT GAACATCTTT GTAAGACAAC 609 AAAGTTTAAG AACATTTTCA CAACTAGAAA ATTAAAACTA 21850 |||||||||| |||||||||| ||| | ||| |||||||||| AAAGTTTAAG AACATTTTCA CAAATGAAAA ATTAAAACTA 649 hqPGS_C04HBa0127E11.1+_SGN-E214138- (21754 21850) ******************************************************************************** EST sequence 33 +strand 586 n (File: SGN-E308984+) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 301 AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 421 GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 481 TGGAAAAGTG TAGAGGCTTA CCTCTTGCGA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGGGCT AAACGAATGG AAAAAGGTGA AAGATCACCT TTGGAA Predicted gene structure (within gDNA segment 23186 to 29661): Exon 1 24506 25018 ( 513 n); cDNA 73 586 ( 514 n); score: 0.859 MATCH C04HBa0127E11.1+ SGN-E308984+ 0.859 513 0.875 C PGS_C04HBa0127E11.1+_SGN-E308984+ (24506 25018) Alignment (genomic DNA sequence = upper lines): TATGTGTTTC TCAAGAGTAC AACACAATGA ATCTTCTTAA AACTATCATA AAATCCATCC 24565 |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| TATGTGTTTC TCAAGAGTAC AACACAATGG ATCTTCTTAA GACTATCATA AAATCCATCC 132 AAGGTTACAA CACAAAAACT CTAGATTTGT CGGAAAAGAT GGCAGAAAGA GATCTAGAAA 24625 |||||| || || |||| |||| |||| ||||||||| || |||||| |||||||||| AAGGTTGCAC CATGGGAACT CTAGGATTGT TGGAAAAGAT GGATGAAAGA GATCTAGAAA 192 ATCACCTTCG TAAGCTAATA ACAAAACACA AATACCTTGT GGTGATTGAT GATATGTGGC 24685 |||||||||| | | ||| | | | ||| || |||||||||| ||| ||||| ||||| |||| ATCACCTTCG TGATCTACTG AAAGAACGCA AATACCTTGT AGTGGTTGAT GATATATGGC 252 AGCGAGAAGC GTGGAAGAGT TTGAAAAGAG CATTCTCGGA TAGCAATAAT GCCAGCAGAG 24745 || ||||||| ||| | ||| |||||||||| ||||| |||| | || | || | |||||||| AGAGAGAAGC ATGGGAAAGT TTGAAAAGAG CATTCCCGGA TGGCGAGAAG GGCAGCAGAG 312 TTATTATTAC CACTCGCAAA GTGGGTGTCG CTGAAAGAGC AGACAACAGA GGTTTTGTCC 24805 | |||||||| ||| |||||| | || ||| | |||||||||| |||| ||||| |||||||| | TCATTATTAC CACGCGCAAA GAGGATGTTG CTGAAAGAGC AGACGACAGA GGTTTTGTTC 372 ATGAACTTTG TTTCCTAAGA CAAGAAGAAA GTTGGGAACT CTTTTGTAGG AAACTAGTTG 24865 || ||||| | ||||||||| |||||||||| ||||||| || |||||| ||| |||||| ||| ATAAACTTCG TTTCCTAAGC CAAGAAGAAA GTTGGGATCT CTTTTGCAGG AAACTACTTG 432 ATGTTCGAGC AATGATTCCA GCGATGGTAA GTCTAGTTAA GGATATGATG G-AAACTATA 24924 |||||||||| |||| ||||| | |||| || |||||| | | ||||||| || | ||| | || ATGTTCGAGC AATGGTTCCA GAAATGGAAA GTCTAGCTGA GGATATGGTG GAAAAGTGTA 492 GAGGCCTACC TCTTGCAATT GTTGTATTGA GTGGACTACT TTAGCATGAA AGGGGACAAG 24984 ||||| |||| |||||| ||| |||||||||| | |||||||| || |||| || | ||| | | GAGGCTTACC TCTTGCGATT GTTGTATTGA GCGGACTACT TTCGCATAAA AAGGGGCTAA 552 ACGAATGGCA AAAAGTTAAA GACTGCCTTT GGAA 25018 |||||||| | ||| || ||| || ||||| |||| ACGAATGGAA AAAGGTGAAA GATCACCTTT GGAA 586 hqPGS_C04HBa0127E11.1+_SGN-E308984+ (24506 25018) ******************************************************************************** EST sequence 104 +strand 624 n (File: SGN-E542827+) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TTGG Predicted gene structure (within gDNA segment 28322 to 21777): Exon 1 27463 27093 ( 371 n); cDNA 1 367 ( 367 n); score: 0.877 Intron 1 27092 27047 ( 46 n); Pd: 0.000 (s: 0.80), Pa: 0.878 (s: 0) Exon 2 27046 27012 ( 35 n); cDNA 368 398 ( 31 n); score: 0.657 Intron 2 27011 26975 ( 37 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80) Exon 3 26974 26935 ( 40 n); cDNA 399 437 ( 39 n); score: 0.800 Intron 3 26934 26646 ( 289 n); Pd: 0.000 (s: 0.80), Pa: 0.898 (s: 0) Exon 4 26645 26640 ( 6 n); cDNA 438 443 ( 6 n); score: 0.833 Intron 4 26639 26318 ( 322 n); Pd: 0.000 (s: 0), Pa: 0.940 (s: 0) Exon 5 26317 26293 ( 25 n); cDNA 444 465 ( 22 n); score: 0.640 Intron 5 26292 25741 ( 552 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 6 25740 25720 ( 21 n); cDNA 466 485 ( 20 n); score: 0.762 Intron 6 25719 22887 (2833 n); Pd: 0.000 (s: 0), Pa: 0.085 (s: 0) Exon 7 22886 22875 ( 12 n); cDNA 486 497 ( 12 n); score: 0.750 MATCH C04HBa0127E11.1- SGN-E542827+ 0.877 510 0.817 C PGS_C04HBa0127E11.1-_SGN-E542827+ (27463 27093,27046 27012,26974 26935,26645 26640,26317 26293,25740 25720,22886 22875) Alignment (genomic DNA sequence = upper lines): TTGACTTTTT TTTTTGTTTC AATGACTAGT TTATAATTAT TATTTTGATA ATCAAATTTA 27404 || ||| || |||||| || |||||||| | |||||||||| |||||||||| |||||||||| TTTTCTT-TT TTTTTGGTT- AATGACTAAT TTATAATTAT TATTTTGATA ATCAAATTTA 58 TTTATGTTTC ACTAATATTC TTGTAAAACT TATTGTAGAT GACCAAATTT TTTCTTCAAA 27344 ||||| |||| |||||||||| |||||||||| |||||||||| ||||||| || |||||| || TTTATATTTC ACTAATATTC TTGTAAAACT TATTGTAGAT GACCAAAATT TTTCTTTGAA 118 TACGAAATTA AATTACAATA CACACAAAAA AAATAGTTTA ATTTTTTAT- TCTTTAAACT 27285 ||| |||||| |||||||||| |||||||||| |||||||||| |||||| | |||||||||| TACCAAATTA AATTACAATA CACACAAAAA AAATAGTTTA GTTTTTTTTC TCTTTAAACT 178 AAGGAATGAA AGAAAAAACA AAATAAGAAT AAGAAATTCA AATAATTATA ATAAAAGAAG 27225 |||||||||| || |||| | |||| ||||| || ||| ||| |||||||||| |||||||||| AAGGAATGAA AG--AAAA-A AAATTAGAAT AACAAACTCA AATAATTATA ATAAAAGAAG 235 TCAAAAAATA ATTAATATAT GAAAAAAAAT TAAA-ATATA CCTTGAACTT TGATAGAAGA 27166 ||||| |||| ||| || ||| ||||||||| |||| ||| | ||| |||||| |||||||||| TCAAACAATA ATTTATGTAT -AAAAAAAAT TAAATATA-A CCTCGAACTT TGATAGAAGA 293 ATCATATATA CCCCTAAATA A-TTTTTAAA TTTTTTTTAG AAGTAATAAA TATAAATTTA 27107 || ||||||| || |||||| | ||||| || | | |||||||||| |||||||||| ATAATATATA CCTTTAAATA ATTTTTTTAA AAACAATCAA AAGTAATAAA TATAAATTTA 353 AAACTAATTT TTTAGCTTTC GTGAAATGAA GGATATATGT GAGCCATTTT GTAACGGTAG 27047 ||| |||||| |||| AAATTAATTT TTTA...... .......... .......... .......... .......... 367 GGGTATATGT GAGCCGTTTA TATAACGGTA AGGGCATATA TGAGCCACTT TTATAACGAG 26987 ||||| | |||| ||| | |||| | || || --ATATATAT TAGCCATTT- TGTAAC-GAC AGTGC..... .......... .......... 398 GGGTATATCA ACTCCAAATG ACAAAGTTGA GGGGTATATC AGACCCTTTT CCCTCTATTT 26927 | |||||| ||||| |||| | |||||| | | | |||| || .......... ..TGCAAATG ACAAAATTGA GAAATATATC A-AACTTTTT CC........ 437 AAAAAGATAT CTCATATTAG ACTAAAGGCA TTTAAATATT CAGATTAGAA GAGTTTGTTT 26867 .......... .......... .......... .......... .......... .......... 437 AATTGTTCCT CCACCTAAAT CACTTAATTA GCTAATTAAT TAATTGTACA TCTGTTTTAT 26807 .......... .......... .......... .......... .......... .......... 437 GGAAAGACTA GTTACGACAT TTTAACTAGG AACGAAAGAT TTTTAAAATT TATGATTTTA 26747 .......... .......... .......... .......... .......... .......... 437 AAAATTTCAT AGTGGTTAAA AAATTATATT ATTAATAGTC AAATAAGAAA TTCCAAATTT 26687 .......... .......... .......... .......... .......... .......... 437 AATCTTTAAA TGATAATTTT CCTTGTTTGG GGAATCTATA GGGAAAAATA GGAGCATGAC 26627 | |||| .......... .......... .......... .......... .GTAAAA... .......... 443 TTTTCAATTT GAAGATGCAT TTTGTAACTT TGAAGAGAAA GATATAAAAT ATTCGATAAG 26567 .......... .......... .......... .......... .......... .......... 443 TCAGCACAAA TTAATTCGAA TTCATCCATG GAGGTTATTC CATAAAAGAT TTTGTTAGAA 26507 .......... .......... .......... .......... .......... .......... 443 CTTGAAGTTC AAGTTCTCAA AATTAATTTT TAGTGATTTC TCAAAATGAA ATTTATTTAG 26447 .......... .......... .......... .......... .......... .......... 443 TAAAAATTGA GCAACTTTTG TATTGAATTT TAGTTTTATT TCGTTGGAAT TCAAAATTAT 26387 .......... .......... .......... .......... .......... .......... 443 ATTAAAGTAA TTTGATAATT GTATAATGAT TGATGAGTTA TATAAAAATT GTGTTGTATG 26327 .......... .......... .......... .......... .......... .......... 443 TTGTTGTAGT TGCATAAAAT TTATATGAAA GAAAATACCC TTCAAAGCTT TAGTGACAAT 26267 | | || ||| ||| | | | || | .........T AG-AT-AAAC TTAAAAG-AG GATA...... .......... .......... 465 TTTATTCCCT TTAATAAAAT TTACTGATCC ATAATTTAGT GTCACCAAAA TTTAAAAGTT 26207 .......... .......... .......... .......... .......... .......... 465 TGTTTCTTCT ATATCAATTT CGTTTGAGAA ACGACTTATT CATGTGATTT TGTAATGACC 26147 .......... .......... .......... .......... .......... .......... 465 CTTCTTGTCA TTTTTAGTAT TTTATCTTCT GTGCATCGTT TAGAGCATTC CTATAGCGAT 26087 .......... .......... .......... .......... .......... .......... 465 CCCAAGTCAT TTATGACTTG CTGAGACTGA CAGATCGATC ACCTGGTCGT TCGTTGATTG 26027 .......... .......... .......... .......... .......... .......... 465 TTGTGTGAGC TTTAGTATTT TTGGAGCTTA TGAAACTTGA ACGATCATTT TTTATCAAAA 25967 .......... .......... .......... .......... .......... .......... 465 GTTCAAGAAG ATGACATCAG AATCCTGTTA GGTAAAATGA CATAGATGAA TCAAACTTTC 25907 .......... .......... .......... .......... .......... .......... 465 AACGACCGAT GGCGAAAATG AGTTTTGTTA ATGTTCAAGT TTAACGACTT CTTAGATTCA 25847 .......... .......... .......... .......... .......... .......... 465 GCTGTTTTTG CAAGAGTTGC ATAAGATGAA ACCTGTTTTG TAATGGCGAA TGACATGAAT 25787 .......... .......... .......... .......... .......... .......... 465 GAGTCGTTTA TAATAGTTTG ACGACATATT TGAGCCTTTT TTTCCTTAAT TAAATCATCA 25727 | |||| || || .......... .......... .......... .......... ......TTTG TAAA-CAACA 478 CAAAATCATT TTAGAATAGA ATCCCAAAAA AAATAATTGT TTGAACCAAT TCCCCACACT 25667 ||||||| CAAAATC... .......... .......... .......... .......... .......... 485 AAAAACAAGC AAAAAAAAAA AAAAAAAAAC AGGAGAAAGT TGAAACAATC CAAGTGTTGC 25607 .......... .......... .......... .......... .......... .......... 485 AGAAGCCAAG TTGATGAACT TGAATGTCTT CATGTACAAC TTCTTCTCTA GAAATATTAA 25547 .......... .......... .......... .......... .......... .......... 485 CACAAAGGTA TAACACCTTC TTAATTTCCA AGTACAACAC ATATAGATAT CAAAACACAT 25487 .......... .......... .......... .......... .......... .......... 485 CTATATGTTG GAACACATTA CAAATATTTG GATCGAAGAA CATAATTGAC CTCAACTTCA 25427 .......... .......... .......... .......... .......... .......... 485 AATTAGAAAG ATCAAGTGAG TGGTACCTTT CTCCTTGACT AAGAATGGTT GGATGATAAA 25367 .......... .......... .......... .......... .......... .......... 485 TGTCAAAGAG GTTTATGTCG GATGCCTTTT ATATCGCAAG ATCACGGAGT AAATCATGAA 25307 .......... .......... .......... .......... .......... .......... 485 CCCTACATTT TCAGTAACTT TTTTCCAAAA TGTTTTAGCC ACTTGAACCA AGCTTCGTCT 25247 .......... .......... .......... .......... .......... .......... 485 TATCAGCTCA TTCAACAAGC CTTCAGCGAC ATTTTCCATT CTTTCTTCTC CTCTTGGTAT 25187 .......... .......... .......... .......... .......... .......... 485 GGTGAAACCC TCTGCCATCC ACATCCGTAT TATGTTATTG GCCTCGACCA CTTGATCTTC 25127 .......... .......... .......... .......... .......... .......... 485 TGGAAAAATA CCAAAGTACA GAAAATACCG CTTGAGCGTA GCTGACAAAA ATCGTTGAAG 25067 .......... .......... .......... .......... .......... .......... 485 CTTAATGATA GTATGTAGGA GATTTCAATA GAGTCTTCTT CAATGTCCTT CCAAAGGCAG 25007 .......... .......... .......... .......... .......... .......... 485 TCTTTAACTT TTTGCCATTC GTCTTGTCCC CTTTCATGCT AAAGTAGTCC ACTCAATACA 24947 .......... .......... .......... .......... .......... .......... 485 ACAATTGCAA GAGGTAGGCC TCTATAGTTT CCATCATATC CTTAACTAGA CTTACCATCG 24887 .......... .......... .......... .......... .......... .......... 485 CTGGAATCAT TGCTCGAACA TCAACTAGTT TCCTACAAAA GAGTTCCCAA CTTTCTTCTT 24827 .......... .......... .......... .......... .......... .......... 485 GTCTTAGGAA ACAAAGTTCA TGGACAAAAC CTCTGTTGTC TGCTCTTTCA GCGACACCCA 24767 .......... .......... .......... .......... .......... .......... 485 CTTTGCGAGT GGTAATAATA ACTCTGCTGG CATTATTGCT ATCCGAGAAT GCTCTTTTCA 24707 .......... .......... .......... .......... .......... .......... 485 AACTCTTCCA CGCTTCTCGC TGCCACATAT CATCAATCAC CACAAGGTAT TTGTGTTTTG 24647 .......... .......... .......... .......... .......... .......... 485 TTATTAGCTT ACGAAGGTGA TTTTCTAGAT CTCTTTCTGC CATCTTTTCC GACAAATCTA 24587 .......... .......... .......... .......... .......... .......... 485 GAGTTTTTGT GTTGTAACCT TGGATGGATT TTATGATAGT TTTAAGAAGA TTCATTGTGT 24527 .......... .......... .......... .......... .......... .......... 485 TGTACTCTTG AGAAACACAT AAAATTTGAG ATTATTGTAA TTTTAGTTCA TTCAAATTCA 24467 .......... .......... .......... .......... .......... .......... 485 AAACTACAGA CGAATTGTAT CAAAAATCAT ATAATGCCGG ATGAGTTATA TGTAAATTGT 24407 .......... .......... .......... .......... .......... .......... 485 TTTTAAGTTT ACTATGTTAT CATAGTTGTA TTTTTTTCTG ATCTCCCATT TGGTGTCTGG 24347 .......... .......... .......... .......... .......... .......... 485 TATCCGTGGG AGCCTGACTA TCCCGAATTC ACGCCACGTA GGGGCCATTT GAGGAGAGTG 24287 .......... .......... .......... .......... .......... .......... 485 CTCCATACCA ATAATTTTTC CATACCGAGG ATTTAAACCC GAGACCTGGA AGGAGCAACT 24227 .......... .......... .......... .......... .......... .......... 485 TCATCCACTG CAGTCTGCAA CATATCTTTT GCTGGTATTG TAGTTGTATT TAGTTTGATA 24167 .......... .......... .......... .......... .......... .......... 485 TGAATATTGT ATACAATGTT GTTGTAGTTG TATGAGATTT TCAGTAATGA ACTTTATACA 24107 .......... .......... .......... .......... .......... .......... 485 AAGTTTATAT ATTGTTCATA CACAAAAATT ATGAACGAAA TTCTAAGCTC TAAGTGAGAT 24047 .......... .......... .......... .......... .......... .......... 485 AGATATATTT CATATGAATT TTACGCTGTT TTCATACACG AGATTTCATA TATGTTTGGA 23987 .......... .......... .......... .......... .......... .......... 485 AAAAAAACTC CTATAGGTGA TTTTTCTACA AAATTATGTA AGATTAGGAT TTGTTTGTAT 23927 .......... .......... .......... .......... .......... .......... 485 ATTTACCTTT GCTATAATCA AATACGCTTC ACGCCTTTCA TTCTCTCTGG AATCTCCATG 23867 .......... .......... .......... .......... .......... .......... 485 AGCTTCGGAC AATGATCGAT ATGAAGAGCT TTAATGAGAG GCATCGCGTT TGTGCTTAAA 23807 .......... .......... .......... .......... .......... .......... 485 TTCCATCTTT CTAGCTTTGA AAGAAAACCA AGATAAATGA ACTTTAGTTG ACTGAAGCTG 23747 .......... .......... .......... .......... .......... .......... 485 TTATCATTGC TCGTTATTTC TTCTCCTTCA TAAGCTCTAC ACAATTCGAG ATTCCTTAGG 23687 .......... .......... .......... .......... .......... .......... 485 TTTGGCAACA TTCCCAAAAT AGGCATCGGA TCTTCTGTCA GTACTGAGTC CCTCAGAACA 23627 .......... .......... .......... .......... .......... .......... 485 ATCATTGTGA TGGAATTTGG AAACGGAGAC AATTTCTCTA TTCTCCCATT TAAATACAAT 23567 .......... .......... .......... .......... .......... .......... 485 TTCTGGAGCT TTTCACAACG ATTAACAAAT TGAAGGGATG GGAATGATAT TACTTCTTCA 23507 .......... .......... .......... .......... .......... .......... 485 GAAAACAATG TGAGAGTGCT TAGGTTTGTC AAGCTGCTAA TGTTGTTTAG GGAGTAATAA 23447 .......... .......... .......... .......... .......... .......... 485 TTCCAAATAT TACGCATGGT TAATTCTCGA AGATTGATTA AATAAGCAGG GTCAATATCT 23387 .......... .......... .......... .......... .......... .......... 485 TCCCACTGAT CACAAGAGAT GTCTTTAAGA ACATGAAGAC TAGTGAGTTT GTTTATACGT 23327 .......... .......... .......... .......... .......... .......... 485 ACCAGAGGTT CTCAATACCG AGCAACTAAA TGTCTTAGAT TTATTAGGTC AGCTGTCTCG 23267 .......... .......... .......... .......... .......... .......... 485 TGGGGTAGTT GGTATAAGCG TCCAGTTTCA TTTACAACAC AAAGTGTCTG TAGATTCTTG 23207 .......... .......... .......... .......... .......... .......... 485 AGGTTGCCAA TTTACAACAC ATATAAACGT CGGAACACAT CTGTAAGTTC AAACAGATTA 23147 .......... .......... .......... .......... .......... .......... 485 TGAAAATCTG GATCGAAGAA CATAATTGAC CTCAACTTTA AATTAGAAAG ATCAGGTTAG 23087 .......... .......... .......... .......... .......... .......... 485 AGGTACCTTT TTCCTTGACT ATGAATGGCA TGTCTAATAC ATGAAGAGGA TATGGAGTGA 23027 .......... .......... .......... .......... .......... .......... 485 TTTCTTGGAT CATAAATGTT AAAGAAGTTT ATCTCCGATG CCTTTTGTAT TGCAAGATCA 22967 .......... .......... .......... .......... .......... .......... 485 CGAAGTAAAT CATGAACCCT GCATAAAGTA ACTTTTTCTC AAGATGTATT TACCACTTGT 22907 .......... .......... .......... .......... .......... .......... 485 ATCAAGCTTC GTCTTATCAG CTCATTCAAG TA 22875 ||| |||| || .......... .......... TTCAATCAAA TA 497 hqPGS_C04HBa0127E11.1-_SGN-E542827+ (27463 27093,27046 27012,26974 26935,26645 26640,26317 26293,25740 25720) ******************************************************************************** EST sequence 101 +strand 460 n (File: SGN-E243215+) 1 TTATTGTAGA TGACCAATTT TTTCTTCGAA TACGAAATTA AATTACAATA CACACAAAAA 61 AAATATTTGA ATTTTTTTTA TTTAAACTAA GGAATGAAAG AAAAAAACAA AATAAGAATA 121 AGAAACTCAA ATTATTATAA TAAAAGAAGT CAAAAAATAA TTTTTGTATG AAAAAATTAA 181 AATATACCTT GAACTTTGAT AGAAGAATCA TATATATCCC TAAATATTTT TTTTAAAAAA 241 AAATTAGAAG TAACAAATAT AAATTTAAAA CTAATTTTTT AACTTTCGTT AAATGAAGGG 301 TATATGTGAG CCATTTTCTA ACGGCAGGGG TATATGTGAG CCGTTTGTAT AACGATAAGG 361 GCATATATGA ACCACTTTTA TTACGAGGGA TATATCAGCT CTAAATGACA AAGTTGAGAG 421 GTATATCAGA CCCTTTTCCC TATTTTTTAA AATTTCATAC Predicted gene structure (within gDNA segment 27974 to 26133): Exon 1 27374 26922 ( 453 n); cDNA 1 452 ( 452 n); score: 0.900 MATCH C04HBa0127E11.1- SGN-E243215+ 0.900 453 0.985 C PGS_C04HBa0127E11.1-_SGN-E243215+ (27374 26922) Alignment (genomic DNA sequence = upper lines): TTATTGTAGA TGACCAAATT TTTTCTTCAA ATACGAAATT AAATTACAAT ACACACAAAA 27315 |||||||||| ||||| |||| |||||||| | |||||||||| |||||||||| |||||||||| TTATTGTAGA TGACC-AATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 59 AAAATAGTTT AATTTTTTAT TCTTTAAACT AAGGAATGAA AG-AAAAAAC AAAATAAGAA 27256 |||||| || |||||||| | | |||||||| |||||||||| || ||||||| |||||||||| AAAATATTTG AATTTTTT-T TATTTAAACT AAGGAATGAA AGAAAAAAAC AAAATAAGAA 118 TAAGAAATTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTAATATA TGAAAAAAAA 27196 ||||||| || |||| ||||| |||||||||| |||||||||| |||| | || || |||||| TAAGAAACTC AAATTATTAT AATAAAAGAA GTCAAAAAAT AATTTTTGTA TG--AAAAAA 176 TTAAAATATA CCTTGAACTT TGATAGAAGA ATCATATATA CCCCTAAATA --ATTTTTAA 27138 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||| TTAAAATATA CCTTGAACTT TGATAGAAGA ATCATATATA TCCCTAAATA TTTTTTTTAA 236 ATTTTTTTTA GAAGTAATAA ATATAAATTT AAAACTAATT TTTTAGCTTT CGTGAAATGA 27078 | ||| ||||||| || |||||||||| |||||||||| ||||| |||| ||| |||||| AAAAAAATTA GAAGTAACAA ATATAAATTT AAAACTAATT TTTTAACTTT CGTTAAATGA 296 AGGATATATG TGAGCCATTT TGTAACGGTA GGGGTATATG TGAGCCGTTT ATATAACGGT 27018 ||| |||||| |||||||||| | |||||| | |||||||||| |||||||||| ||||||| | AGGGTATATG TGAGCCATTT TCTAACGGCA GGGGTATATG TGAGCCGTTT GTATAACGAT 356 AAGGGCATAT ATGAGCCACT TTTATAACGA GGGGTATATC AACTCCAAAT GACAAAGTTG 26958 |||||||||| |||| ||||| ||||| |||| ||| |||||| | ||| |||| |||||||||| AAGGGCATAT ATGAACCACT TTTATTACGA GGGATATATC AGCTCTAAAT GACAAAGTTG 416 AGGGGTATAT CAGACCCTTT TCCCTCTATT TAAAAA 26922 || ||||||| |||||||||| ||||| | || | |||| AGAGGTATAT CAGACCCTTT TCCCTATTTT TTAAAA 452 hqPGS_C04HBa0127E11.1-_SGN-E243215+ (27374 26922) ******************************************************************************** EST sequence 19 -strand 460 n (File: SGN-E243215-) 1 GTATGAAATT TTAAAAAATA GGGAAAAGGG TCTGATATAC CTCTCAACTT TGTCATTTAG 61 AGCTGATATA TCCCTCGTAA TAAAAGTGGT TCATATATGC CCTTATCGTT ATACAAACGG 121 CTCACATATA CCCCTGCCGT TAGAAAATGG CTCACATATA CCCTTCATTT AACGAAAGTT 181 AAAAAATTAG TTTTAAATTT ATATTTGTTA CTTCTAATTT TTTTTTAAAA AAAATATTTA 241 GGGATATATA TGATTCTTCT ATCAAAGTTC AAGGTATATT TTAATTTTTT CATACAAAAA 301 TTATTTTTTG ACTTCTTTTA TTATAATAAT TTGAGTTTCT TATTCTTATT TTGTTTTTTT 361 CTTTCATTCC TTAGTTTAAA TAAAAAAAAT TCAAATATTT TTTTTGTGTG TATTGTAATT 421 TAATTTCGTA TTCGAAGAAA AAATTGGTCA TCTACAATAA Predicted gene structure (within gDNA segment 28477 to 23127): Exon 1 27675 27522 ( 154 n); cDNA 22 172 ( 151 n); score: 0.753 Intron 1 27521 26646 ( 876 n); Pd: 0.000 (s: 0.60), Pa: 0.898 (s: 0) Exon 2 26645 26610 ( 36 n); cDNA 173 207 ( 35 n); score: 0.611 Intron 2 26609 26318 ( 292 n); Pd: 0.000 (s: 0), Pa: 0.940 (s: 0) Exon 3 26317 26293 ( 25 n); cDNA 208 232 ( 25 n); score: 0.640 Intron 3 26292 25058 (1235 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 4 25057 25025 ( 33 n); cDNA 233 264 ( 32 n); score: 0.682 Intron 4 25024 24506 ( 519 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 5 24505 24472 ( 34 n); cDNA 265 297 ( 33 n); score: 0.691 Intron 5 24471 24414 ( 58 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.64) Exon 6 24413 24353 ( 61 n); cDNA 298 354 ( 57 n); score: 0.656 MATCH C04HBa0127E11.1- SGN-E243215- 0.726 343 0.746 C PGS_C04HBa0127E11.1-_SGN-E243215- (27675 27522,26645 26610,26317 26293,25057 25025,24505 24472,24413 24353) Alignment (genomic DNA sequence = upper lines): GGAAAAGGGT CTGATATACC CCTCAACTTT GTCATTTAGA GCTGATATAC CCCTTATTAT 27616 |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| |||| | || GGAAAAGGGT CTGATATACC TCTCAACTTT GTCATTTAGA GCTGATATAT CCCTCGTAAT 81 GAAAGTGACT CATATATACC CCTACTTGTA AACAAATGAC TCAGATATAC TCTTTTCCTC 27556 |||||| | ||||||| || | || || ||||| | | ||| |||||| | | || AAAAGTGGTT CATATATGCC CTTATCGTTA TACAAACGGC TCACATATAC -CCCTGCC-G 139 TAACGGAAAT GAAAAAAAAA TAATTTTAAT CTAAATTTTT ATTATTTTTT TTCTAAAAAA 27496 | | | |||| | | | | || || || ||| TTA-GAAAAT GGCTCACATA TACCCTTCAT TTAA...... .......... .......... 172 TATAATCCCA ATCCTCGTCA AACATATTTT CTTTGACTTT TTTTTTTGTT TCAATGACTA 27436 .......... .......... .......... .......... .......... .......... 172 GTTTATAATT ATTATTTTGA TAATCAAATT TATTTATGTT TCACTAATAT TCTTGTAAAA 27376 .......... .......... .......... .......... .......... .......... 172 CTTATTGTAG ATGACCAAAT TTTTTCTTCA AATACGAAAT TAAATTACAA TACACACAAA 27316 .......... .......... .......... .......... .......... .......... 172 AAAAATAGTT TAATTTTTTA TTCTTTAAAC TAAGGAATGA AAGAAAAAAC AAAATAAGAA 27256 .......... .......... .......... .......... .......... .......... 172 TAAGAAATTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTAATATA TGAAAAAAAA 27196 .......... .......... .......... .......... .......... .......... 172 TTAAAATATA CCTTGAACTT TGATAGAAGA ATCATATATA CCCCTAAATA ATTTTTAAAT 27136 .......... .......... .......... .......... .......... .......... 172 TTTTTTTAGA AGTAATAAAT ATAAATTTAA AACTAATTTT TTAGCTTTCG TGAAATGAAG 27076 .......... .......... .......... .......... .......... .......... 172 GATATATGTG AGCCATTTTG TAACGGTAGG GGTATATGTG AGCCGTTTAT ATAACGGTAA 27016 .......... .......... .......... .......... .......... .......... 172 GGGCATATAT GAGCCACTTT TATAACGAGG GGTATATCAA CTCCAAATGA CAAAGTTGAG 26956 .......... .......... .......... .......... .......... .......... 172 GGGTATATCA GACCCTTTTC CCTCTATTTA AAAAGATATC TCATATTAGA CTAAAGGCAT 26896 .......... .......... .......... .......... .......... .......... 172 TTAAATATTC AGATTAGAAG AGTTTGTTTA ATTGTTCCTC CACCTAAATC ACTTAATTAG 26836 .......... .......... .......... .......... .......... .......... 172 CTAATTAATT AATTGTACAT CTGTTTTATG GAAAGACTAG TTACGACATT TTAACTAGGA 26776 .......... .......... .......... .......... .......... .......... 172 ACGAAAGATT TTTAAAATTT ATGATTTTAA AAATTTCATA GTGGTTAAAA AATTATATTA 26716 .......... .......... .......... .......... .......... .......... 172 TTAATAGTCA AATAAGAAAT TCCAAATTTA ATCTTTAAAT GATAATTTTC CTTGTTTGGG 26656 .......... .......... .......... .......... .......... .......... 172 GAATCTATAG GGAAAAATAG GAGCATGACT TTTCAATTTG AAGATGCATT TTGTAACTTT 26596 |||| || | || | | ||| ||||| | || .......... CGAAAGTTA- AAAAATTAGT TTTAAATTTA TATTTG.... .......... 207 GAAGAGAAAG ATATAAAATA TTCGATAAGT CAGCACAAAT TAATTCGAAT TCATCCATGG 26536 .......... .......... .......... .......... .......... .......... 207 AGGTTATTCC ATAAAAGATT TTGTTAGAAC TTGAAGTTCA AGTTCTCAAA ATTAATTTTT 26476 .......... .......... .......... .......... .......... .......... 207 AGTGATTTCT CAAAATGAAA TTTATTTAGT AAAAATTGAG CAACTTTTGT ATTGAATTTT 26416 .......... .......... .......... .......... .......... .......... 207 AGTTTTATTT CGTTGGAATT CAAAATTATA TTAAAGTAAT TTGATAATTG TATAATGATT 26356 .......... .......... .......... .......... .......... .......... 207 GATGAGTTAT ATAAAAATTG TGTTGTATGT TGTTGTAGTT GCATAAAATT TATATGAAAG 26296 || | | |||| | | | || .......... .......... .......... ........TT ACTTCTAATT TTTTTTTAAA 229 AAAATACCCT TCAAAGCTTT AGTGACAATT TTATTCCCTT TAATAAAATT TACTGATCCA 26236 ||| AAA....... .......... .......... .......... .......... .......... 232 TAATTTAGTG TCACCAAAAT TTAAAAGTTT GTTTCTTCTA TATCAATTTC GTTTGAGAAA 26176 .......... .......... .......... .......... .......... .......... 232 CGACTTATTC ATGTGATTTT GTAATGACCC TTCTTGTCAT TTTTAGTATT TTATCTTCTG 26116 .......... .......... .......... .......... .......... .......... 232 TGCATCGTTT AGAGCATTCC TATAGCGATC CCAAGTCATT TATGACTTGC TGAGACTGAC 26056 .......... .......... .......... .......... .......... .......... 232 AGATCGATCA CCTGGTCGTT CGTTGATTGT TGTGTGAGCT TTAGTATTTT TGGAGCTTAT 25996 .......... .......... .......... .......... .......... .......... 232 GAAACTTGAA CGATCATTTT TTATCAAAAG TTCAAGAAGA TGACATCAGA ATCCTGTTAG 25936 .......... .......... .......... .......... .......... .......... 232 GTAAAATGAC ATAGATGAAT CAAACTTTCA ACGACCGATG GCGAAAATGA GTTTTGTTAA 25876 .......... .......... .......... .......... .......... .......... 232 TGTTCAAGTT TAACGACTTC TTAGATTCAG CTGTTTTTGC AAGAGTTGCA TAAGATGAAA 25816 .......... .......... .......... .......... .......... .......... 232 CCTGTTTTGT AATGGCGAAT GACATGAATG AGTCGTTTAT AATAGTTTGA CGACATATTT 25756 .......... .......... .......... .......... .......... .......... 232 GAGCCTTTTT TTCCTTAATT AAATCATCAC AAAATCATTT TAGAATAGAA TCCCAAAAAA 25696 .......... .......... .......... .......... .......... .......... 232 AATAATTGTT TGAACCAATT CCCCACACTA AAAACAAGCA AAAAAAAAAA AAAAAAAACA 25636 .......... .......... .......... .......... .......... .......... 232 GGAGAAAGTT GAAACAATCC AAGTGTTGCA GAAGCCAAGT TGATGAACTT GAATGTCTTC 25576 .......... .......... .......... .......... .......... .......... 232 ATGTACAACT TCTTCTCTAG AAATATTAAC ACAAAGGTAT AACACCTTCT TAATTTCCAA 25516 .......... .......... .......... .......... .......... .......... 232 GTACAACACA TATAGATATC AAAACACATC TATATGTTGG AACACATTAC AAATATTTGG 25456 .......... .......... .......... .......... .......... .......... 232 ATCGAAGAAC ATAATTGACC TCAACTTCAA ATTAGAAAGA TCAAGTGAGT GGTACCTTTC 25396 .......... .......... .......... .......... .......... .......... 232 TCCTTGACTA AGAATGGTTG GATGATAAAT GTCAAAGAGG TTTATGTCGG ATGCCTTTTA 25336 .......... .......... .......... .......... .......... .......... 232 TATCGCAAGA TCACGGAGTA AATCATGAAC CCTACATTTT CAGTAACTTT TTTCCAAAAT 25276 .......... .......... .......... .......... .......... .......... 232 GTTTTAGCCA CTTGAACCAA GCTTCGTCTT ATCAGCTCAT TCAACAAGCC TTCAGCGACA 25216 .......... .......... .......... .......... .......... .......... 232 TTTTCCATTC TTTCTTCTCC TCTTGGTATG GTGAAACCCT CTGCCATCCA CATCCGTATT 25156 .......... .......... .......... .......... .......... .......... 232 ATGTTATTGG CCTCGACCAC TTGATCTTCT GGAAAAATAC CAAAGTACAG AAAATACCGC 25096 .......... .......... .......... .......... .......... .......... 232 TTGAGCGTAG CTGACAAAAA TCGTTGAAGC TTAATGATAG TATGTAGGAG ATTTCAATAG 25036 | ||| |||| | || | || | .......... .......... .......... ........AA TATTTAGG-G ATATATAT-G 252 AGTCTTCT-T CAATGTCCTT CCAAAGGCAG TCTTTAACTT TTTGCCATTC GTCTTGTCCC 24977 | |||||| | || ATTCTTCTAT CA........ .......... .......... .......... .......... 264 CTTTCATGCT AAAGTAGTCC ACTCAATACA ACAATTGCAA GAGGTAGGCC TCTATAGTTT 24917 .......... .......... .......... .......... .......... .......... 264 CCATCATATC CTTAACTAGA CTTACCATCG CTGGAATCAT TGCTCGAACA TCAACTAGTT 24857 .......... .......... .......... .......... .......... .......... 264 TCCTACAAAA GAGTTCCCAA CTTTCTTCTT GTCTTAGGAA ACAAAGTTCA TGGACAAAAC 24797 .......... .......... .......... .......... .......... .......... 264 CTCTGTTGTC TGCTCTTTCA GCGACACCCA CTTTGCGAGT GGTAATAATA ACTCTGCTGG 24737 .......... .......... .......... .......... .......... .......... 264 CATTATTGCT ATCCGAGAAT GCTCTTTTCA AACTCTTCCA CGCTTCTCGC TGCCACATAT 24677 .......... .......... .......... .......... .......... .......... 264 CATCAATCAC CACAAGGTAT TTGTGTTTTG TTATTAGCTT ACGAAGGTGA TTTTCTAGAT 24617 .......... .......... .......... .......... .......... .......... 264 CTCTTTCTGC CATCTTTTCC GACAAATCTA GAGTTTTTGT GTTGTAACCT TGGATGGATT 24557 .......... .......... .......... .......... .......... .......... 264 TTATGATAGT TTTAAGAAGA TTCATTGTGT TGTACTCTTG AGAAACACAT AAAATTTGAG 24497 || || || .......... .......... .......... .......... .......... .AAGTTCAAG 273 AT-TATTGTA ATTTTAGTTC ATTCAAATTC AAAACTACAG ACGAATTGTA TCAAAAATCA 24438 | |||| || ||||| ||| || ||| GTATATTTTA ATTTT--TTC ATACAA.... .......... .......... .......... 297 TATAATGCCG GATGAGTTAT ATGTAAATTG TTTTTAAGTT TACTATGTTA TCATAGTTGT 24378 ||||| ||||| | | || | ||| | ||| | | .......... .......... ....AAATTA TTTTT-TGAC TTCT-T-TTA TTATAATAAT 330 ATTTTTTTCT GATCTCCCAT TTGGT 24353 | ||||| || || || || || TTGAGTTTCT TAT-TCTTAT TTTGT 354 hqPGS_C04HBa0127E11.1-_SGN-E243215- (27675 27522) ******************************************************************************** EST sequence 93 +strand 641 n (File: SGN-E255576+) 1 GTGTTTTCAG CCTTGACCAC TCGATCTTCT GGAAACATAC CAAAGTAGAG AAAACACTGC 61 TTGAGCTCAA TTGACAAATC ATTGTAGCTT AGTGATAGTA TGTTGGAGAT TTCAACAGAT 121 TTATCTTCTT TAATGCTCTT CCAAAGGTGA TCTTTCACCT TTTGCCATTC ATCTAGATCC 181 TTTTTATGCG AAAGTAGTCC GCTCAATACA ACAATTGCAA GAGGTAAACC TCTACACTTT 241 TCCACCATAT CCTTAGCTAG ACTTTCCATT TCTGCAACCA TTGCTCGAAC ATCAAGTAGT 301 TTCCTAAGAA AGAGATCCCA ACTTTCTTCT TGACTTAGGA AACGAAGTTT ATGAACAAAA 361 CCTCTGTCGG CTGCTCTTTC AGCGATATCC TCTTTGCGCG TGGTAATAAT GACTCTGCTG 421 CCATTCTTGT CATCCGGGAA TGCTCTTTTC AAACTCTCCC ATGCTTCTCT TTGCCAGACA 481 TCATCAACCA CCACAAGGTA TTTGCGTTCT TTCAATAGAT CACGAAGGTG GTTTTCTAGA 541 TCTCTTTCAT CCATCTTTTC CAACAATCCT AGAGTTCCCA TGGTGCGACC TTGGATGGAT 601 TTTATGATAG TCTTAAGAAG ATCCATTGTG TTGTACTCTT G Predicted gene structure (within gDNA segment 35920 to 28832): Exon 1 34938 34824 ( 115 n); cDNA 3 117 ( 115 n); score: 0.913 Intron 1 34823 33924 ( 900 n); Pd: 0.000 (s: 0.92), Pa: 0.981 (s: 0) Exon 2 33923 33918 ( 6 n); cDNA 118 123 ( 6 n); score: 0.667 Intron 2 33917 29960 (3958 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.84) Exon 3 29959 29442 ( 518 n); cDNA 124 641 ( 518 n); score: 0.886 MATCH C04HBa0127E11.1- SGN-E255576+ 0.891 639 0.997 C PGS_C04HBa0127E11.1-_SGN-E255576+ (34938 34824,33923 33918,29959 29442) Alignment (genomic DNA sequence = upper lines): GTTTTCAGCC TCGAGCTCTT GATCTTCTGG AAAAATACCG AAGTAGAGAA AACACTGCTT 34879 |||||||||| | || | || |||||||||| ||| ||||| |||||||||| |||||||||| GTTTTCAGCC TTGACCACTC GATCTTCTGG AAACATACCA AAGTAGAGAA AACACTGCTT 62 GAGCTCAGTT GACAAATCAT TGTAGCTTAA TGATAGTATG TAGGAGATTT CAATAGAGTC 34819 ||||||| || |||||||||| ||||||||| |||||||||| | |||||||| ||| | GAGCTCAATT GACAAATCAT TGTAGCTTAG TGATAGTATG TTGGAGATTT CAACA..... 117 TTCTTCAATG TTCTTCCAAA GGCGGTCTTT CACCTTTTTC CATTCGCCTG GCCCCCTTTT 34759 .......... .......... .......... .......... .......... .......... 117 ATGCGAAAGT AGTCCGCTCA ATACAACAAT TGCAAGAGGT AAGCCTCCAC ACTTATCCAC 34699 .......... .......... .......... .......... .......... .......... 117 CATATCCTTA GCTAGCCTCT CCATTGTGGA GGTCATTGCT CGAACATCAA GTAGTTTCCT 34639 .......... .......... .......... .......... .......... .......... 117 GCAAAAGAGA TCCCAACTTT CTTCTTGGTT TAGGAAACGA AGTTTATGGA CGAAACCTCT 34579 .......... .......... .......... .......... .......... .......... 117 GTTGTATGCT CTTTCAGCAA CATCTTGCTT GCGCGTGGTG ATAATAACTC TGCTGCCATT 34519 .......... .......... .......... .......... .......... .......... 117 CTTGCTATCC GGAAATGCTC TTTTCAAACT CTCTCATGCT TCTCTCTGCC ATATATCATC 34459 .......... .......... .......... .......... .......... .......... 117 AACCACCACA AGGTATTTGC GTTTTTTTAA AAGATTACGA AGGTAAATTT CTAGATCTCT 34399 .......... .......... .......... .......... .......... .......... 117 CTCTGTCATC CTTTCCAACA AATCTAGAGT TTCCTTGGTG CAACCTTGGA TGGATTTTAT 34339 .......... .......... .......... .......... .......... .......... 117 GATATACCTG AGGAGATCCA CAGTGTTGTA CTCTTGAGAA ACACATATCC AAGCTCGTGT 34279 .......... .......... .......... .......... .......... .......... 117 ATGGAAGCTA TTGACTATAT CAGGACTGAT GTAGAGATTT CTTGCAAGAG TGGTCTTGCC 34219 .......... .......... .......... .......... .......... .......... 117 TAAACCACCC ATGCCATAAA TGGAGATGAC GCTTCGACGA GGCTCTTCTT TGAGAAGTTC 34159 .......... .......... .......... .......... .......... .......... 117 AGATAGCAAT CTTTCTACAA CATCCTGAAA TCCAACAAAA ATGTGATCCT GACCATCCAC 34099 .......... .......... .......... .......... .......... .......... 117 ATAGGAGGTG GTTCTCCTCA ATGTTGTAAC CATGGCAGAT GGATTGTTTG GCCGCTTACT 34039 .......... .......... .......... .......... .......... .......... 117 TGATCCATCT CCTGAATTAG TACTATTGAT ATTTGTAATA CCATAAGTCT CTCGCTTGCG 33979 .......... .......... .......... .......... .......... .......... 117 AGAGATATCC ATAATTCGTT GCTTGAGTGA TTGTATCTCT TTGGATACTT TGTAGAATTT 33919 |||| .......... .......... .......... .......... .......... .....GATTT 122 GGTGTCCTTC TTACAGATGC AAGCGCAACC CTTGAGACAA CTAGCAAATT GATCGTCACC 33859 A......... .......... .......... .......... .......... .......... 123 TTTACCAGCC TTGAAGCTGT AAGTCTCTAG TATAGCGACA GCGTCATTTG CAATAGAGTT 33799 .......... .......... .......... .......... .......... .......... 123 GATCTCAAAC ACCCATTGTT GAACTCTTTG ATCTCCACAT TGCTTTAGTT CTGCATCTCT 33739 .......... .......... .......... .......... .......... .......... 123 GAGGAAAGAC TGCATGAAGA GTAGATCATT TCTCAGCCAT CTAACTTCAT CTCTGAGATT 33679 .......... .......... .......... .......... .......... .......... 123 TGTAAGCAGG GAAACTTCCT GAATGAGGAA ATCACCCAGT TTTTTAACTG CAAATGACAC 33619 .......... .......... .......... .......... .......... .......... 123 AAAGGCATCA GCCATCTTCA GGAGTATTGA TTTTTATCTG GAGAAATGGG GTCTGTATAT 33559 .......... .......... .......... .......... .......... .......... 123 TGGAATACTA GTCAGAAATG AGAGATAGAG ATATACACTC AAAAACAGTT GACATTAATA 33499 .......... .......... .......... .......... .......... .......... 123 CTGATTAAAA GTTGAGTAAA AACGAAAGAA ATAATACATA AACATGACCC TTAACTTGGC 33439 .......... .......... .......... .......... .......... .......... 123 TTCAGCCGAC AACAATGACC TTTAACTTTG GGTGTGCACA ATTAGACACT TAAAAAATTA 33379 .......... .......... .......... .......... .......... .......... 123 TATATAATTG AAGAAAAGAC ATATTCCTCT ATGTACTAGA CCCTTAAGAG TTATGTTTAT 33319 .......... .......... .......... .......... .......... .......... 123 ATACTATGCT TTTTTTGAAA TATGTATTAA AGCTTCTTTA ACTACCATTA CACAACTTGT 33259 .......... .......... .......... .......... .......... .......... 123 GGGAAAATTT ATGTGTGGAG AAAAGTCTAA AAAGTAAATA ATTATAAAAG AATTATGATT 33199 .......... .......... .......... .......... .......... .......... 123 GTCAAATATG TCAAACAAGA ATGTGGAAAA TGAACAAGAA AAAATTAGAG AAATGAAAGT 33139 .......... .......... .......... .......... .......... .......... 123 GAAATGTGAC TCATTTGACT GGGCAAGAGA AAATCAAAGT GTTCCCATTT GAAAAAATTA 33079 .......... .......... .......... .......... .......... .......... 123 GAGTAATGAA ACTATATATG GAGGAAAAGT CTATCAGTAG TAGTTCTGTG TTGTCCAATT 33019 .......... .......... .......... .......... .......... .......... 123 CAATGGTCCA CCTTATAAAT TTATTTGGGT ATGATTATGA AGAGGCTGAA ATAGGACATC 32959 .......... .......... .......... .......... .......... .......... 123 GATATATATA TATATATATA TATATATAGC TTCATCGAAA AGGAGTTCTC TCCACGTCTT 32899 .......... .......... .......... .......... .......... .......... 123 TCATTCTCTC GGGTATCTCT TTTAGCTTTG GACATTGATG GATAGCAAAA CCTTTAATAT 32839 .......... .......... .......... .......... .......... .......... 123 GAGGCGTGGC ACTTGCGGGC TAAATGCCAT TTCCCTAAGT TCTCAAGACG AAGGATCTCC 32779 .......... .......... .......... .......... .......... .......... 123 AGTTGACTGA AGTTGTTATC AATGCATGTA ATTTCTTTTC CTTCATAAGC TCTAAAAAAG 32719 .......... .......... .......... .......... .......... .......... 123 TTCAAGATTC CTTAGGTTTG GCAACATTCC CAAAATAGGC ATCGGATCTT CTGTGAGTTT 32659 .......... .......... .......... .......... .......... .......... 123 TTGAGTCCGA AAGAACCATC ATTACGATGG AATTTGGAAG GCATAATACA TAAATATGCC 32599 .......... .......... .......... .......... .......... .......... 123 CTTTAACTTG ACTTCAAATC ACATTTATGC CCTTCAACTT TGGATGTGCA CAAGTAGACA 32539 .......... .......... .......... .......... .......... .......... 123 CTTAAACTTG TATAAAGTTG AACAAACAGA CACACATGTC CTACATGTCA TCCTACTTGT 32479 .......... .......... .......... .......... .......... .......... 123 CATTTTTTGT CCGACGTGGT GTTCTACGTG TATTGTGTCA TGTAGGACTC ATGTGTTTAT 32419 .......... .......... .......... .......... .......... .......... 123 TTATTTAAAA GTTGGATAGT TAAAGTGTCT GTTTGTGCAT TATGAAAGTT GGAGGTCAAA 32359 .......... .......... .......... .......... .......... .......... 123 GTTAAAATTT GAAGGCAAAT TTAGGGTCCA ATATATGTAT TATGCTGGAA ATTGGTCCGA 32299 .......... .......... .......... .......... .......... .......... 123 CAGAGGCAGC TTCTCAATTC TCCCTTGTAA CCATAATTTG TGGAGATTAT GACAAGAATT 32239 .......... .......... .......... .......... .......... .......... 123 AACAAATTCT AGGGCTGTGA ATGATTCATC ATCTTTACAC AACAATCTGA GAGTGCTAAG 32179 .......... .......... .......... .......... .......... .......... 123 GTTTTTCGAG CTGCTAATGT TGTTTAGGGA GTAGGATTTT CTTAATATTA TGCATTCTTA 32119 .......... .......... .......... .......... .......... .......... 123 ATTATCGAAG ATTGACTAAG TCAATAGGGA GTGATCACAT TGGTTCCTTT TAAGAACTTG 32059 .......... .......... .......... .......... .......... .......... 123 ACGACTAGTT AAGAATTTAA TAAAGTAGAG AAAATTATAG GCTTATGTCA TCTGCGAAAA 31999 .......... .......... .......... .......... .......... .......... 123 TACTGCAAAA AAGAAGTGTT GAAATTAACT GAGACCCTCA ACATCTTCTT CCATACACAG 31939 .......... .......... .......... .......... .......... .......... 123 CCCAATAACC AAAGTTATTC TATGCTTTCT TCATATTCTA TTGAATATAT TTACCATACA 31879 .......... .......... .......... .......... .......... .......... 123 ATTGCATTTT TTTCACCCTC TACCCTGCAT CGAAAGTTCT CCTATGGCTC TTTACATGTT 31819 .......... .......... .......... .......... .......... .......... 123 AGGACTAGGA ATCTTGATCT GGTTTTTGAA ATCAAATTGA ACGATACGAG AAGGTACCTT 31759 .......... .......... .......... .......... .......... .......... 123 TGTTTTGTAG TTTGCACATA TCGAGAATGT TACTACTTAA TGCCTAGAAA TATTGGGATA 31699 .......... .......... .......... .......... .......... .......... 123 GACCAAGTTG CCTGTGGCAT CGATCAGGCG GAATGATTAA TCAAAACATC AGAAAATCAT 31639 .......... .......... .......... .......... .......... .......... 123 TATTTTTACT TAAAATCCCA AAAACAATTC TCTTTTAAAC CAATTCTGCA CACTCAAAAC 31579 .......... .......... .......... .......... .......... .......... 123 GCTCAAAAAA AATATACAAT TTAAACACTA AAAATACACT CCTGAAACCT GATTAATGCT 31519 .......... .......... .......... .......... .......... .......... 123 CCCTTCAACT GCTTCTTTCT CCCACCTGCT CATGACAGTG TCAAGTGTCA ACCAAAAGAT 31459 .......... .......... .......... .......... .......... .......... 123 ATATATTTCT CTTTGAACTT AATGTATGTT TGATACGATA AAAGTCATTT TCGAGGAAAT 31399 .......... .......... .......... .......... .......... .......... 123 ATTTGTATTA TGCTCACCAA AAATAGTTTC ATAACAAAAG AGTGAGTCAT TTTACATAGA 31339 .......... .......... .......... .......... .......... .......... 123 AGTGGTCATT GTGGATTGAG ATATATTACC TCTACGGTTA CGAAACAGGC CAAAAATGAG 31279 .......... .......... .......... .......... .......... .......... 123 TTATCCCCAC ATCTTGCATT CTCTTGGGAA TATGATATAG ATGTGGACAG TATTTGATGT 31219 .......... .......... .......... .......... .......... .......... 123 CAAGACCTTT AATATGAGGC ATGGCACTTG TGGCTAAATG CCATGTTTCT AGCATCTCAA 31159 .......... .......... .......... .......... .......... .......... 123 GACGATGAAG ACGGAGGAAC TCAAGTTGAC TGAAGCTGTT ATCACTGCAC GTTATTTCTT 31099 .......... .......... .......... .......... .......... .......... 123 TTCCTTCATA AGCTTCTTCT AATTCGAGAT TCCTTAGGTT TGGCAACATT CCCAAAATAG 31039 .......... .......... .......... .......... .......... .......... 123 GCATCGGATC TACCCTGAGT TTTGACTTCC AAAGAACCAT CATTGTGATG GAATTTGGAA 30979 .......... .......... .......... .......... .......... .......... 123 ACAGAGGAAG TTTCTTTATT GTCCCTCTTA ACCTCAATTT CTGGAGCTTT TGACAAGAAT 30919 .......... .......... .......... .......... .......... .......... 123 TGACAAATTC AAGAGATGGG AATGATTCAT CAGCATAACA CAATAATCTG AGAGTGCTAA 30859 .......... .......... .......... .......... .......... .......... 123 GGTTTTTCAA GCTGCTAATG TTGTATAGGG AGTAAGATTC GGTAATATCA TGCATGCTTA 30799 .......... .......... .......... .......... .......... .......... 123 GTTCACGAAG ATTGACTAAA TCAACAGGGT CAACATCTTT CCACTGATCA CAACGAATGC 30739 .......... .......... .......... .......... .......... .......... 123 CTTTAAGAAC TTGAAGACTC GTGAGTTTGT TTATACATTT CAGAGGCTCT GAATATGGAG 30679 .......... .......... .......... .......... .......... .......... 123 CAACTAAATG TCTTAGATTT ATTAGGTCAA CTGTCTTTTG GGATAGACGG CTAAACCCTC 30619 .......... .......... .......... .......... .......... .......... 123 CATGGTCATC GACAAGAAGT GTCTGTAAAT TCTTGAGGTT GCTAATGGAA GAGGGAATAT 30559 .......... .......... .......... .......... .......... .......... 123 TACAGACACC TCTCAAGCTT AACAACTTGA GGTAGTACAA ACTTCCTATG ACATCAGACA 30499 .......... .......... .......... .......... .......... .......... 123 TAACATAACC TCCAATATCC AAGTACAACA CGTATATATG TCGGAACACA CTACTGAAGT 30439 .......... .......... .......... .......... .......... .......... 123 TTGTAAGATG GATGTTACGA AAATCTGGAT CGAAGAACAT AATTGACCTC AACTTCAAGT 30379 .......... .......... .......... .......... .......... .......... 123 GAGAAAGATC AAGTGAGAGG TACCTTTCTC CTTGACCATG AATGACATGT CTGATGCATA 30319 .......... .......... .......... .......... .......... .......... 123 AGGAGGATAT GGAGTGCTTT TTTGGATCAT AAATGTCAAA GAATTTTATA TCGAATGCCT 30259 .......... .......... .......... .......... .......... .......... 123 TTTGTACGGC AAGATCACGA AGTAAATCAT GAACCTTACA CACAGTAACC TTTTCCCAAA 30199 .......... .......... .......... .......... .......... .......... 123 AGGAACGTAC CTCTTGTATC AAACTTCGTC TTATCAGCTC ATTCAAGAAT CCTTCAGCGA 30139 .......... .......... .......... .......... .......... .......... 123 CATCCTCCAT TCTTTCTTCT CCATTTGGTA TGAGACCCTC GGCCATCCAC AACAGTATTA 30079 .......... .......... .......... .......... .......... .......... 123 TCTTTTCAGC GTCGACCTCT TGATCTTCTG GGAAAACACC AAAGTACAGA AAACACTGCT 30019 .......... .......... .......... .......... .......... .......... 123 TGAGTGTAGT TGACAAATCG TTGTAGCTCA ATGATAGTAT GTAGGAGATT TGAATGGAGT 29959 | .......... .......... .......... .......... .......... .........T 124 CATCTTGAAT GTTCTGCCAA AAGTGATCTT TCACTTTTTG CCATTGGTCT AGCCCCCTTT 29899 | |||| ||| | ||| |||| | |||||||| |||| ||||| ||||| ||| || || ||| CTTCTTTAAT GCTCTTCCAA AGGTGATCTT TCACCTTTTG CCATTCATCT AGATCCTTTT 184 TATGTGAAAG TAGTCCGCTC AATACAACAA TTGCAAGAGG TAAGCCTCTA CACTTTTCCA 29839 |||| ||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TATGCGAAAG TAGTCCGCTC AATACAACAA TTGCAAGAGG TAAACCTCTA CACTTTTCCA 244 CCATATCTTT AGCTATCCTT ACCATTTCTG GAACCATTGC CCGAACATCA AGTTGTTTCC 29779 ||||||| || ||||| ||| ||||||||| ||||||||| ||||||||| ||| |||||| CCATATCCTT AGCTAGACTT TCCATTTCTG CAACCATTGC TCGAACATCA AGTAGTTTCC 304 TACAAAAGAG GTCCCAACTT TCTTTTTGGC TTAGGAAACG AAGGTTATGG ACAAAACCTC 29719 || |||||| ||||||||| |||| ||| | |||||||||| ||| ||||| |||||||||| TAAGAAAGAG ATCCCAACTT TCTTCTTGAC TTAGGAAACG AAGTTTATGA ACAAAACCTC 364 TGTTGTCAGC TCTTTCCGCA ACATCATGTT TCCGCGTGGT AATAATAACT CTGCTGCCCT 29659 ||| | | || |||||| || | ||| | || | |||||||| |||||| ||| |||||||| | TGTCGGCTGC TCTTTCAGCG ATATCCTCTT TGCGCGTGGT AATAATGACT CTGCTGCCAT 424 TCTTGCTATC TGGGAATGCT CTTTTCAAAC TCTCCCATGC TTCTCTCTGC CATACATCAT 29599 ||||| ||| ||||||||| |||||||||| |||||||||| |||||| ||| || ||||||| TCTTGTCATC CGGGAATGCT CTTTTCAAAC TCTCCCATGC TTCTCTTTGC CAGACATCAT 484 CAACCACTAC AAGGTATTTG CCTTCTTTCA ATAGATCACG AAGGTAAATT TCTAGATCGC 29539 ||||||| || |||||||||| | |||||||| |||||||||| ||||| || |||||||| | CAACCACCAC AAGGTATTTG CGTTCTTTCA ATAGATCACG AAGGTGGTTT TCTAGATCTC 544 TTTCTGTCAT CCTTTCCAAG AAATCTAGAG TTCCCTTAGT GCGACCTTGG ATGGATTTTA 29479 |||| ||| | ||||||| || |||||| ||||| | || |||||||||| |||||||||| TTTCATCCAT CTTTTCCAAC AATCCTAGAG TTCCCATGGT GCGACCTTGG ATGGATTTTA 604 TGATATTCTT AAGAAGATCC ATTGTGTTGT ACTCTTG 29442 ||||| |||| |||||||||| |||||||||| ||||||| TGATAGTCTT AAGAAGATCC ATTGTGTTGT ACTCTTG 641 hqPGS_C04HBa0127E11.1-_SGN-E255576+ (34938 34824,33923 33918,29959 29442) ******************************************************************************** EST sequence 32 -strand 586 n (File: SGN-E308984-) 1 TTCCAAAGGT GATCTTTCAC CTTTTTCCAT TCGTTTAGCC CCTTTTTATG CGAAAGTAGT 61 CCGCTCAATA CAACAATCGC AAGAGGTAAG CCTCTACACT TTTCCACCAT ATCCTCAGCT 121 AGACTTTCCA TTTCTGGAAC CATTGCTCGA ACATCAAGTA GTTTCCTGCA AAAGAGATCC 181 CAACTTTCTT CTTGGCTTAG GAAACGAAGT TTATGAACAA AACCTCTGTC GTCTGCTCTT 241 TCAGCAACAT CCTCTTTGCG CGTGGTAATA ATGACTCTGC TGCCCTTCTC GCCATCCGGG 301 AATGCTCTTT TCAAACTTTC CCATGCTTCT CTCTGCCATA TATCATCAAC CACTACAAGG 361 TATTTGCGTT CTTTCAGTAG ATCACGAAGG TGATTTTCTA GATCTCTTTC ATCCATCTTT 421 TCCAACAATC CTAGAGTTCC CATGGTGCAA CCTTGGATGG ATTTTATGAT AGTCTTAAGA 481 AGATCCATTG TGTTGTACTC TTGAGAAACA CATATCCAAG CACGTGTAGG CCAGGTATTG 541 ACTATACGAG GACTTCTGTA GAGGTTTCTT GCAAGAGTGG TCTTGC Predicted gene structure (within gDNA segment 31013 to 28174): Exon 1 29942 29361 ( 582 n); cDNA 3 584 ( 582 n); score: 0.895 MATCH C04HBa0127E11.1- SGN-E308984- 0.895 582 0.993 C PGS_C04HBa0127E11.1-_SGN-E308984- (29942 29361) Alignment (genomic DNA sequence = upper lines): CCAAAAGTGA TCTTTCACTT TTTGCCATTG GTCTAGCCCC CTTTTATGTG AAAGTAGTCC 29883 ||||| |||| |||||||| | ||| ||||| || ||||||| ||||||| | |||||||||| CCAAAGGTGA TCTTTCACCT TTTTCCATTC GTTTAGCCCC TTTTTATGCG AAAGTAGTCC 62 GCTCAATACA ACAATTGCAA GAGGTAAGCC TCTACACTTT TCCACCATAT CTTTAGCTAT 29823 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| | | ||||| GCTCAATACA ACAATCGCAA GAGGTAAGCC TCTACACTTT TCCACCATAT CCTCAGCTAG 122 CCTTACCATT TCTGGAACCA TTGCCCGAAC ATCAAGTTGT TTCCTACAAA AGAGGTCCCA 29763 ||| ||||| |||||||||| |||| ||||| ||||||| || ||||| |||| |||| ||||| ACTTTCCATT TCTGGAACCA TTGCTCGAAC ATCAAGTAGT TTCCTGCAAA AGAGATCCCA 182 ACTTTCTTTT TGGCTTAGGA AACGAAGGTT ATGGACAAAA CCTCTGTTGT CAGCTCTTTC 29703 |||||||| | |||||||||| ||||||| || ||| |||||| ||||||| || | |||||||| ACTTTCTTCT TGGCTTAGGA AACGAAGTTT ATGAACAAAA CCTCTGTCGT CTGCTCTTTC 242 CGCAACATCA TGTTTCCGCG TGGTAATAAT AACTCTGCTG CCCTTCTTGC TATCTGGGAA 29643 |||||||| | ||| |||| |||||||||| ||||||||| ||||||| || ||| ||||| AGCAACATCC TCTTTGCGCG TGGTAATAAT GACTCTGCTG CCCTTCTCGC CATCCGGGAA 302 TGCTCTTTTC AAACTCTCCC ATGCTTCTCT CTGCCATACA TCATCAACCA CTACAAGGTA 29583 |||||||||| ||||| |||| |||||||||| |||||||| | |||||||||| |||||||||| TGCTCTTTTC AAACTTTCCC ATGCTTCTCT CTGCCATATA TCATCAACCA CTACAAGGTA 362 TTTGCCTTCT TTCAATAGAT CACGAAGGTA AATTTCTAGA TCGCTTTCTG TCATCCTTTC 29523 ||||| |||| |||| ||||| ||||||||| | |||||||| || ||||| |||| |||| TTTGCGTTCT TTCAGTAGAT CACGAAGGTG ATTTTCTAGA TCTCTTTCAT CCATCTTTTC 422 CAAGAAATCT AGAGTTCCCT TAGTGCGACC TTGGATGGAT TTTATGATAT TCTTAAGAAG 29463 ||| || || ||||||||| | |||| ||| |||||||||| ||||||||| |||||||||| CAACAATCCT AGAGTTCCCA TGGTGCAACC TTGGATGGAT TTTATGATAG TCTTAAGAAG 482 ATCCATTGTG TTGTACTCTT GAGAAACACA TATCCAAGCG CGTGTAGGGA AGCTTGACAC 29403 |||||||||| |||||||||| |||||||||| ||||||||| |||||||| || | || ATCCATTGTG TTGTACTCTT GAGAAACACA TATCCAAGCA CGTGTAGGCC AGGTATTGAC 542 TATATTAGGA TTGTTGTAGA GGTTTCTTGC AAGAGTGGTC TT 29361 |||| |||| | |||||| |||||||||| |||||||||| || TATACGAGGA CTTCTGTAGA GGTTTCTTGC AAGAGTGGTC TT 584 hqPGS_C04HBa0127E11.1-_SGN-E308984- (29942 29361) ******************************************************************************** EST sequence 128 +strand 469 n (File: SGN-E258424+) 1 GTGTTTTCAG CCTTGACCAC TCGATCTTCT GGAAACATAC CAAAGTAGAG AAAACACTGC 61 TTGAGCTCAA TTGACAAATC ATTGTAGCTT AGTGATAGTA TGTTGGAGAT TTCAACAGAT 121 TTATCTTCTT TAATGCTCTT CCAAAGGTGA TCTTTCACCT TTTGCCATTC ATCTAGATCC 181 TTTTTATGCG AAAGTAGTCC GCTCAATACA ACAATTGCAA GAGGTAAACC TCTACACTTT 241 TCCACCATAT CCTTAGCTAG ACTTTCCATT TCTGCAACCA TTGCTCGAAC ATCAAGTAGT 301 TTCCTAAGAA AGAGATCCCA ACTTTCTTCT TGACTTAGGA AACGAAGTTT ATGAACAAAA 361 CCTCTGTCGG CTGCTCTTTC AGCGATATCC TCTTTGCGCG TGGTAATAAT GACTCTGCTG 421 CCATTCTTGT CATCCGGGAA TGCTCTTTTC AAACTCTCCC ATGCTTCTC Predicted gene structure (within gDNA segment 32383 to 27042): Exon 1 30076 29614 ( 463 n); cDNA 4 469 ( 466 n); score: 0.852 MATCH C04HBa0127E11.1- SGN-E258424+ 0.852 463 0.987 C PGS_C04HBa0127E11.1-_SGN-E258424+ (30076 29614) Alignment (genomic DNA sequence = upper lines): TTTTCAGCGT CGACCTCTTG ATCTTCTGGG AAAACACCAA AGTACAGAAA ACACTGCTTG 30017 |||||||| | |||| || | ||||||||| || | ||||| |||| ||||| |||||||||| TTTTCAGCCT TGACCACTCG ATCTTCTGGA AACATACCAA AGTAGAGAAA ACACTGCTTG 63 AGTGTAGTTG ACAAATCGTT GTAGCTCAAT GATAGTATGT AGGAGATTTG AATGGAGTCA 29957 || | ||| ||||||| || |||||| | | |||||||||| |||||||| || || | | AGCTCAATTG ACAAATCATT GTAGCTTAGT GATAGTATGT TGGAGATTTC AACAGATTTA 123 TC---TTGAA TGTTCTGCCA AAAGTGATCT TTCACTTTTT GCCATTGGTC TAGCCCCCTT 29900 || || || || ||| ||| || ||||||| ||||| |||| |||||| || ||| || || TCTTCTTTAA TGCTCTTCCA AAGGTGATCT TTCACCTTTT GCCATTCATC TAGATCCTTT 183 TTATGTGAAA GTAGTCCGCT CAATACAACA ATTGCAAGAG GTAAGCCTCT ACACTTTTCC 29840 ||||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TTATGCGAAA GTAGTCCGCT CAATACAACA ATTGCAAGAG GTAAACCTCT ACACTTTTCC 243 ACCATATCTT TAGCTATCCT TACCATTTCT GGAACCATTG CCCGAACATC AAGTTGTTTC 29780 |||||||| | |||||| || | |||||||| | |||||||| | |||||||| |||| ||||| ACCATATCCT TAGCTAGACT TTCCATTTCT GCAACCATTG CTCGAACATC AAGTAGTTTC 303 CTACAAAAGA GGTCCCAACT TTCTTTTTGG CTTAGGAAAC GAAGGTTATG GACAAAACCT 29720 ||| ||||| | |||||||| ||||| ||| |||||||||| |||| ||||| ||||||||| CTAAGAAAGA GATCCCAACT TTCTTCTTGA CTTAGGAAAC GAAGTTTATG AACAAAACCT 363 CTGTTGTCAG CTCTTTCCGC AACATCATGT TTCCGCGTGG TAATAATAAC TCTGCTGCCC 29660 |||| | | | ||||||| || | ||| | | || ||||||| ||||||| || ||||||||| CTGTCGGCTG CTCTTTCAGC GATATCCTCT TTGCGCGTGG TAATAATGAC TCTGCTGCCA 423 TTCTTGCTAT CTGGGAATGC TCTTTTCAAA CTCTCCCATG CTTCTC 29614 |||||| || | |||||||| |||||||||| |||||||||| |||||| TTCTTGTCAT CCGGGAATGC TCTTTTCAAA CTCTCCCATG CTTCTC 469 hqPGS_C04HBa0127E11.1-_SGN-E258424+ (30076 29614) ******************************************************************************** EST sequence 122 +strand 396 n (File: SGN-E258522+) 1 GTGTGTTTTC AGCCTTGACC ACTCGATCTT CTGGAAACAT ACCAAAGTAG AGAAAACACT 61 GCTTGAGCTC AATTGACAAA TCATTGTAGC TTAGTGATAG TATGTTGGAG ATTTCAACAG 121 ATTTATCTTC TTTAATGCTC TTCCAAAGGT GATCTTTCAC CTTTTGCCAT TCATCTAGAT 181 CCTTTTTATG CGAAAGTAGT CCGCTCAATA CAACAATTGC AAGAGGTAAA CCTCTACACT 241 TTTCCACCAT ATCCTTAGCT AGACTTTCCA TTTCTGCAAC CATTGCTCGA ACATCAAGTA 301 GTTTCCTAAG AAAGAGATCC CAACTTTCTT CTTGACTTAG GAAACGAAGT TTATGAACAA 361 AACCTCTGTC GGCTGCTCTT TCAACGATAT CCTCTT Predicted gene structure (within gDNA segment 32403 to 27792): Exon 1 30076 29689 ( 388 n); cDNA 6 396 ( 391 n); score: 0.836 MATCH C04HBa0127E11.1- SGN-E258522+ 0.836 388 0.980 C PGS_C04HBa0127E11.1-_SGN-E258522+ (30076 29689) Alignment (genomic DNA sequence = upper lines): TTTTCAGCGT CGACCTCTTG ATCTTCTGGG AAAACACCAA AGTACAGAAA ACACTGCTTG 30017 |||||||| | |||| || | ||||||||| || | ||||| |||| ||||| |||||||||| TTTTCAGCCT TGACCACTCG ATCTTCTGGA AACATACCAA AGTAGAGAAA ACACTGCTTG 65 AGTGTAGTTG ACAAATCGTT GTAGCTCAAT GATAGTATGT AGGAGATTTG AATGGAGTCA 29957 || | ||| ||||||| || |||||| | | |||||||||| |||||||| || || | | AGCTCAATTG ACAAATCATT GTAGCTTAGT GATAGTATGT TGGAGATTTC AACAGATTTA 125 --T-CTTGAA TGTTCTGCCA AAAGTGATCT TTCACTTTTT GCCATTGGTC TAGCCCCCTT 29900 | ||| || || ||| ||| || ||||||| ||||| |||| |||||| || ||| || || TCTTCTTTAA TGCTCTTCCA AAGGTGATCT TTCACCTTTT GCCATTCATC TAGATCCTTT 185 TTATGTGAAA GTAGTCCGCT CAATACAACA ATTGCAAGAG GTAAGCCTCT ACACTTTTCC 29840 ||||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TTATGCGAAA GTAGTCCGCT CAATACAACA ATTGCAAGAG GTAAACCTCT ACACTTTTCC 245 ACCATATCTT TAGCTATCCT TACCATTTCT GGAACCATTG CCCGAACATC AAGTTGTTTC 29780 |||||||| | |||||| || | |||||||| | |||||||| | |||||||| |||| ||||| ACCATATCCT TAGCTAGACT TTCCATTTCT GCAACCATTG CTCGAACATC AAGTAGTTTC 305 CTACAAAAGA GGTCCCAACT TTCTTTTTGG CTTAGGAAAC GAAGGTTATG GACAAAACCT 29720 ||| ||||| | |||||||| ||||| ||| |||||||||| |||| ||||| ||||||||| CTAAGAAAGA GATCCCAACT TTCTTCTTGA CTTAGGAAAC GAAGTTTATG AACAAAACCT 365 CTGTTGTCAG CTCTTTCCGC AACATCATGT T 29689 |||| | | | ||||||| | | ||| | | | CTGTCGGCTG CTCTTTCAAC GATATCCTCT T 396 hqPGS_C04HBa0127E11.1-_SGN-E258522+ (30076 29689) ******************************************************************************** EST sequence 135 +strand 605 n (File: SGN-E356529+) 1 CACAAGGAAG GCAAATACCT TATGCTTGCT GTTCAGGAAC TGGTTTCAGG AGATCAGTCT 61 GAGGGCAGGT TTGTGTTTGG TCGTGAAAAC AAGAAGCCTA AAGATTCTGA CGCTGATAGA 121 TTTACAAGGG ACGGGACAAA CCCAAAGAGT TTGTTGCAGA CGCTACTTAT GAGGGCGGGT 181 CACTCCCCTC CCAAGTACAA AACAAAGCAT CTAAAAACAA ATGAATTTAG GGCACTTGCA 241 GAGTTCAAGG GAATGCAATT TGTAGGTAAA CCAAAGAGAA ACAAAGCCCT TGCAGAAAAG 301 GATGCTGCAA TAGAAGCACT AGCATGGTTA ACTCAAACAT CTGACAAGAA TCATGGTGAA 361 GATGATAAAT CTCCTCCTGA TGTCACCGAT AACATGCTGA AGCTTCTTGG TAAACGCAGG 421 AGATCAAAGC GTCGCTGAGG TGATAAGACT AATTGATTGT AGGCATAATA CATAAATATG 481 CCCTTTAACT TGGCTTCGAA TTACATTTAT GACCTTCAAC TTTGGATTTG CACAAGTAGA 541 CACTTAAATT TGTATAAAGT TGAACAAATA GACACACATG TCCTATATGT CATTTTTTTT 601 ATCCT Predicted gene structure (within gDNA segment 37820 to 31686): Exon 1 36807 36776 ( 32 n); cDNA 309 338 ( 30 n); score: 0.594 Intron 1 36775 35654 (1122 n); Pd: 0.512 (s: 0), Pa: 0.279 (s: 0) Exon 2 35653 35635 ( 19 n); cDNA 339 358 ( 20 n); score: 0.553 Intron 2 35634 33924 (1711 n); Pd: 0.000 (s: 0), Pa: 0.981 (s: 0) Exon 3 33923 33918 ( 6 n); cDNA 359 364 ( 6 n); score: 0.667 Intron 3 33917 33883 ( 35 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 33882 33841 ( 42 n); cDNA 365 404 ( 40 n); score: 0.643 Intron 4 33840 33180 ( 661 n); Pd: 0.839 (s: 0.64), Pa: 0.243 (s: 0.52) Exon 5 33179 33117 ( 63 n); cDNA 405 460 ( 56 n); score: 0.556 Intron 5 33116 32621 ( 496 n); Pd: 0.354 (s: 0.54), Pa: 0.000 (s: 0.94) Exon 6 32620 32478 ( 143 n); cDNA 461 603 ( 143 n); score: 0.909 MATCH C04HBa0127E11.1- SGN-E356529+ 0.801 305 0.504 C PGS_C04HBa0127E11.1-_SGN-E356529+ (36807 36776,35653 35635,33923 33918,33882 33841,33179 33117,32620 32478) Alignment (genomic DNA sequence = upper lines): AATGGAATGA ATGTGTCAGC GTTTAAGCAG ACGTAAGAAG GCATCATCTG CCATTCATGA 36748 ||| ||| | | | || ||| | || || AATAGAA-GC A-CTAGCATG GTTAACTCAA AC........ .......... .......... 338 TGCAGTGATT GGATTATTTT GGTACGTATT GCATCTCTAC TTTTGCATTA AAAGTCGAGT 36688 .......... .......... .......... .......... .......... .......... 338 CTTTTGTAGT TTACAGGATC TGTTCTAAAA CAGAAAGAAC GAGGCATCGG ATTTTTGAGC 36628 .......... .......... .......... .......... .......... .......... 338 TTGTGTGTAC AGAATCAGAA AACCCAAAAA TTAGGTACTA AAGCTAGTTA GATGAATGAA 36568 .......... .......... .......... .......... .......... .......... 338 CTCCTTCGCT ATGCCATCAT GAAGAGAAAA TGATCAAAAT GCTCCTTGAT AAATGAGCTT 36508 .......... .......... .......... .......... .......... .......... 338 TGGTTCATTT AGTCAATACA TGGCCTACTT AGGCCTCGAA ACAGGGTAGA GACAATGCAA 36448 .......... .......... .......... .......... .......... .......... 338 ATCCTATAAT GCTTTGTGCA AAAATCCATC TAAAGCTCAC AATCAGTAGC TGGATGAAAG 36388 .......... .......... .......... .......... .......... .......... 338 TACACAGCAT ACTTTTCATT CTTTTTTTTG AATCTGATGC AACTTCAAAC ACTCATGTCG 36328 .......... .......... .......... .......... .......... .......... 338 ACCTAAACCT TTAATAACAG GCATGGGACT TGTAGCTGAA TGCCAACTCT CAATGTATCG 36268 .......... .......... .......... .......... .......... .......... 338 AAGATCAACA AAGACGAACA AACTCCAACT GACAAAAAAT GTCTTCAAGT GACAGCTTCC 36208 .......... .......... .......... .......... .......... .......... 338 TCGCCTGTTT AACCGAAATA TTATTAACAC ACTATTTATG AAATAAGACT TCATGTATGC 36148 .......... .......... .......... .......... .......... .......... 338 TTGAAAAGCT TCGCGTCTTT CATTCTCTGG GGAATCTTGT TCAGCTTTTT ACAGTGATCA 36088 .......... .......... .......... .......... .......... .......... 338 ATACGAAGAC CTTTAATCAG AGGCATGGCA CTTGTGGCTA AATGTCATGT GTCTAGGTTC 36028 .......... .......... .......... .......... .......... .......... 338 TCAAGACAAG CAAGACTAAG GAACTCGAGT TGAGGGAAGC TATTATCACT GCAGAATATT 35968 .......... .......... .......... .......... .......... .......... 338 TCTTTTCCTT GATAAGCTCT AAGAACTTCG AGTTTTCTTA GGTTTGGCAA CATTCCCAAA 35908 .......... .......... .......... .......... .......... .......... 338 ATAGGCATCG GATCTTCCAT GAGTTTTGAG TCCAAAAGAA CCATCATTGT GATGGAATTT 35848 .......... .......... .......... .......... .......... .......... 338 GGTAACAGAG ACAGTTTCTG TATTCTCCCA TCTAACCACA ATTTCTGAAG CTTTTCACAA 35788 .......... .......... .......... .......... .......... .......... 338 TAATAAAGAA ATTCAAGGTC TGGGAATGAT TGACCATCTC TACAAAACAA TTTGAGAGTG 35728 .......... .......... .......... .......... .......... .......... 338 CTAAGGTTTT TCAAGCTGCT AATGTTGTTT AGGGAGTAAG ATTTGGTTAT ATCAATCATG 35668 .......... .......... .......... .......... .......... .......... 338 CTTAATTCTC GAAGAT-TGA CTAAAATCAA CAGGGTCAAC ATCTTTCCAC TGATCACAAG 35609 || ||| | | ||||| | .......... ....ATCTGA CAAGAATCAT GGTG...... .......... .......... 358 AGATGTCTTT AAGAATTTGA AGACTAGTGA GTTTACTTAT ACGTACCAGA GGTTCAGAAT 35549 .......... .......... .......... .......... .......... .......... 358 ACGGAGCAAC TAAATGCCTT AGATTTATTA GGTCAGCTGT CTCGGGGGGT AGTTGGCACA 35489 .......... .......... .......... .......... .......... .......... 358 AATGTCTAAA TTCACTTTTG ACACAAAGTG TCTGCAAATT CTTGAGGTTG CCAATGGAGG 35429 .......... .......... .......... .......... .......... .......... 358 AGGGAAGATT ACCAATACCT CCCAAGCTTA AGAATTTGAG ATGGTATAAA CTTCCTATGG 35369 .......... .......... .......... .......... .......... .......... 358 CATGAGGTAC AGTTCCACCA AGAGTATCCA ACTACAACAC ATATATATGT TGGAACACAC 35309 .......... .......... .......... .......... .......... .......... 358 TACAGAAGTT TATAAGATTC ATGTTCCGAA AATCTGGATC GAAGAACATA ATTGACCTCA 35249 .......... .......... .......... .......... .......... .......... 358 ACTTTAAGTT AGAAAGATCA AGTGAGAGGT ACTTTTCTCC TTGATCATGA ATGGCATGCC 35189 .......... .......... .......... .......... .......... .......... 358 TGATACATAA GGAAGATATG GAGTGGTTTC TTGGATCATA AATGTCAAAG AAGTTTACCT 35129 .......... .......... .......... .......... .......... .......... 358 CCAATGCCTT TTGTATGGCA AGATCACGAA GTAAATCATG AACCTTACAT TCAGAAACTT 35069 .......... .......... .......... .......... .......... .......... 358 TTTCCCAAAA TGTTCGAGCC ACTTGAACCA AGCTTCGTCT TATTAGCTCA TTCAAGAAGC 35009 .......... .......... .......... .......... .......... .......... 358 CTTCAGCTAC ATCCTCCATT CTTTCTTGTC CTCTTGGTAT GAAACCCTCA GCCATCCACA 34949 .......... .......... .......... .......... .......... .......... 358 GCCGTATTAC GTTTTCAGCC TCGAGCTCTT GATCTTCTGG AAAAATACCG AAGTAGAGAA 34889 .......... .......... .......... .......... .......... .......... 358 AACACTGCTT GAGCTCAGTT GACAAATCAT TGTAGCTTAA TGATAGTATG TAGGAGATTT 34829 .......... .......... .......... .......... .......... .......... 358 CAATAGAGTC TTCTTCAATG TTCTTCCAAA GGCGGTCTTT CACCTTTTTC CATTCGCCTG 34769 .......... .......... .......... .......... .......... .......... 358 GCCCCCTTTT ATGCGAAAGT AGTCCGCTCA ATACAACAAT TGCAAGAGGT AAGCCTCCAC 34709 .......... .......... .......... .......... .......... .......... 358 ACTTATCCAC CATATCCTTA GCTAGCCTCT CCATTGTGGA GGTCATTGCT CGAACATCAA 34649 .......... .......... .......... .......... .......... .......... 358 GTAGTTTCCT GCAAAAGAGA TCCCAACTTT CTTCTTGGTT TAGGAAACGA AGTTTATGGA 34589 .......... .......... .......... .......... .......... .......... 358 CGAAACCTCT GTTGTATGCT CTTTCAGCAA CATCTTGCTT GCGCGTGGTG ATAATAACTC 34529 .......... .......... .......... .......... .......... .......... 358 TGCTGCCATT CTTGCTATCC GGAAATGCTC TTTTCAAACT CTCTCATGCT TCTCTCTGCC 34469 .......... .......... .......... .......... .......... .......... 358 ATATATCATC AACCACCACA AGGTATTTGC GTTTTTTTAA AAGATTACGA AGGTAAATTT 34409 .......... .......... .......... .......... .......... .......... 358 CTAGATCTCT CTCTGTCATC CTTTCCAACA AATCTAGAGT TTCCTTGGTG CAACCTTGGA 34349 .......... .......... .......... .......... .......... .......... 358 TGGATTTTAT GATATACCTG AGGAGATCCA CAGTGTTGTA CTCTTGAGAA ACACATATCC 34289 .......... .......... .......... .......... .......... .......... 358 AAGCTCGTGT ATGGAAGCTA TTGACTATAT CAGGACTGAT GTAGAGATTT CTTGCAAGAG 34229 .......... .......... .......... .......... .......... .......... 358 TGGTCTTGCC TAAACCACCC ATGCCATAAA TGGAGATGAC GCTTCGACGA GGCTCTTCTT 34169 .......... .......... .......... .......... .......... .......... 358 TGAGAAGTTC AGATAGCAAT CTTTCTACAA CATCCTGAAA TCCAACAAAA ATGTGATCCT 34109 .......... .......... .......... .......... .......... .......... 358 GACCATCCAC ATAGGAGGTG GTTCTCCTCA ATGTTGTAAC CATGGCAGAT GGATTGTTTG 34049 .......... .......... .......... .......... .......... .......... 358 GCCGCTTACT TGATCCATCT CCTGAATTAG TACTATTGAT ATTTGTAATA CCATAAGTCT 33989 .......... .......... .......... .......... .......... .......... 358 CTCGCTTGCG AGAGATATCC ATAATTCGTT GCTTGAGTGA TTGTATCTCT TTGGATACTT 33929 .......... .......... .......... .......... .......... .......... 358 TGTAGAATTT GGTGTCCTTC TTACAGATGC AAGCGCAACC CTTGAGACAA CTAGCAAATT 33869 || | | | || | | | .....AAGAT G......... .......... .......... ......ATAA ATCTCCTCCT 378 GATCGTCACC TTTACCAGCC TTGAAGCTGT AAGTCTCTAG TATAGCGACA GCGTCATTTG 33809 ||| |||||| || || | ||||||| GAT-GTCACC GATAACATGC -TGAAGCT.. .......... .......... .......... 404 CAATAGAGTT GATCTCAAAC ACCCATTGTT GAACTCTTTG ATCTCCACAT TGCTTTAGTT 33749 .......... .......... .......... .......... .......... .......... 404 CTGCATCTCT GAGGAAAGAC TGCATGAAGA GTAGATCATT TCTCAGCCAT CTAACTTCAT 33689 .......... .......... .......... .......... .......... .......... 404 CTCTGAGATT TGTAAGCAGG GAAACTTCCT GAATGAGGAA ATCACCCAGT TTTTTAACTG 33629 .......... .......... .......... .......... .......... .......... 404 CAAATGACAC AAAGGCATCA GCCATCTTCA GGAGTATTGA TTTTTATCTG GAGAAATGGG 33569 .......... .......... .......... .......... .......... .......... 404 GTCTGTATAT TGGAATACTA GTCAGAAATG AGAGATAGAG ATATACACTC AAAAACAGTT 33509 .......... .......... .......... .......... .......... .......... 404 GACATTAATA CTGATTAAAA GTTGAGTAAA AACGAAAGAA ATAATACATA AACATGACCC 33449 .......... .......... .......... .......... .......... .......... 404 TTAACTTGGC TTCAGCCGAC AACAATGACC TTTAACTTTG GGTGTGCACA ATTAGACACT 33389 .......... .......... .......... .......... .......... .......... 404 TAAAAAATTA TATATAATTG AAGAAAAGAC ATATTCCTCT ATGTACTAGA CCCTTAAGAG 33329 .......... .......... .......... .......... .......... .......... 404 TTATGTTTAT ATACTATGCT TTTTTTGAAA TATGTATTAA AGCTTCTTTA ACTACCATTA 33269 .......... .......... .......... .......... .......... .......... 404 CACAACTTGT GGGAAAATTT ATGTGTGGAG AAAAGTCTAA AAAGTAAATA ATTATAAAAG 33209 .......... .......... .......... .......... .......... .......... 404 AATTATGATT GTCAAATATG TCAAACAAGA ATGTGGAAAA TGAACAAGAA AAAATTAGAG 33149 | ||| ||| | | ||| ||| | .......... .......... .........T CT-TGGTAAA CGCAGGAGAT CAAA-GCG-T 432 AAATGAAAGT GAAATGTGAC TCATTTGACT GGGCAAGAGA AAATCAAAGT GTTCCCATTT 33089 || | || | || ||| | | |||| | | CGCTG-AGGT G--ATAAGAC T-AATTGATT GT........ .......... .......... 460 GAAAAAATTA GAGTAATGAA ACTATATATG GAGGAAAAGT CTATCAGTAG TAGTTCTGTG 33029 .......... .......... .......... .......... .......... .......... 460 TTGTCCAATT CAATGGTCCA CCTTATAAAT TTATTTGGGT ATGATTATGA AGAGGCTGAA 32969 .......... .......... .......... .......... .......... .......... 460 ATAGGACATC GATATATATA TATATATATA TATATATAGC TTCATCGAAA AGGAGTTCTC 32909 .......... .......... .......... .......... .......... .......... 460 TCCACGTCTT TCATTCTCTC GGGTATCTCT TTTAGCTTTG GACATTGATG GATAGCAAAA 32849 .......... .......... .......... .......... .......... .......... 460 CCTTTAATAT GAGGCGTGGC ACTTGCGGGC TAAATGCCAT TTCCCTAAGT TCTCAAGACG 32789 .......... .......... .......... .......... .......... .......... 460 AAGGATCTCC AGTTGACTGA AGTTGTTATC AATGCATGTA ATTTCTTTTC CTTCATAAGC 32729 .......... .......... .......... .......... .......... .......... 460 TCTAAAAAAG TTCAAGATTC CTTAGGTTTG GCAACATTCC CAAAATAGGC ATCGGATCTT 32669 .......... .......... .......... .......... .......... .......... 460 CTGTGAGTTT TTGAGTCCGA AAGAACCATC ATTACGATGG AATTTGGAAG GCATAATACA 32609 || |||||||||| .......... .......... .......... .......... ........AG GCATAATACA 472 TAAATATGCC CTTTAACTTG ACTTCAAATC ACATTTATGC CCTTCAACTT TGGATGTGCA 32549 |||||||||| |||||||||| |||| ||| ||||||||| |||||||||| ||||| |||| TAAATATGCC CTTTAACTTG GCTTCGAATT ACATTTATGA CCTTCAACTT TGGATTTGCA 532 CAAGTAGACA CTTAAACTTG TATAAAGTTG AACAAACAGA CACACATGTC CTACATGTCA 32489 |||||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| ||| |||||| CAAGTAGACA CTTAAATTTG TATAAAGTTG AACAAATAGA CACACATGTC CTATATGTCA 592 TCCTACTTGT C 32478 | | || | | TTTTTTTTAT C 603 hqPGS_C04HBa0127E11.1-_SGN-E356529+ (32620 32478) ******************************************************************************** EST sequence 31 -strand 586 n (File: SGN-E308984-) 1 TTCCAAAGGT GATCTTTCAC CTTTTTCCAT TCGTTTAGCC CCTTTTTATG CGAAAGTAGT 61 CCGCTCAATA CAACAATCGC AAGAGGTAAG CCTCTACACT TTTCCACCAT ATCCTCAGCT 121 AGACTTTCCA TTTCTGGAAC CATTGCTCGA ACATCAAGTA GTTTCCTGCA AAAGAGATCC 181 CAACTTTCTT CTTGGCTTAG GAAACGAAGT TTATGAACAA AACCTCTGTC GTCTGCTCTT 241 TCAGCAACAT CCTCTTTGCG CGTGGTAATA ATGACTCTGC TGCCCTTCTC GCCATCCGGG 301 AATGCTCTTT TCAAACTTTC CCATGCTTCT CTCTGCCATA TATCATCAAC CACTACAAGG 361 TATTTGCGTT CTTTCAGTAG ATCACGAAGG TGATTTTCTA GATCTCTTTC ATCCATCTTT 421 TCCAACAATC CTAGAGTTCC CATGGTGCAA CCTTGGATGG ATTTTATGAT AGTCTTAAGA 481 AGATCCATTG TGTTGTACTC TTGAGAAACA CATATCCAAG CACGTGTAGG CCAGGTATTG 541 ACTATACGAG GACTTCTGTA GAGGTTTCTT GCAAGAGTGG TCTTGC Predicted gene structure (within gDNA segment 35523 to 33035): Exon 1 34805 34220 ( 586 n); cDNA 1 586 ( 586 n); score: 0.883 MATCH C04HBa0127E11.1- SGN-E308984- 0.883 586 1.000 C PGS_C04HBa0127E11.1-_SGN-E308984- (34805 34220) Alignment (genomic DNA sequence = upper lines): TTCCAAAGGC GGTCTTTCAC CTTTTTCCAT TCGCCTGGCC CCCTTTTATG CGAAAGTAGT 34746 ||||||||| | |||||||| |||||||||| ||| | ||| || ||||||| |||||||||| TTCCAAAGGT GATCTTTCAC CTTTTTCCAT TCGTTTAGCC CCTTTTTATG CGAAAGTAGT 60 CCGCTCAATA CAACAATTGC AAGAGGTAAG CCTCCACACT TATCCACCAT ATCCTTAGCT 34686 |||||||||| ||||||| || |||||||||| |||| ||||| | |||||||| ||||| |||| CCGCTCAATA CAACAATCGC AAGAGGTAAG CCTCTACACT TTTCCACCAT ATCCTCAGCT 120 AGCCTCTCCA -TTGTGGAGG TCATTGCTCG AACATCAAGT AGTTTCCTGC AAAAGAGATC 34627 || || |||| || |||| ||||||||| |||||||||| |||||||||| |||||||||| AGACTTTCCA TTTCTGGA-A CCATTGCTCG AACATCAAGT AGTTTCCTGC AAAAGAGATC 179 CCAACTTTCT TCTTGGTTTA GGAAACGAAG TTTATGGACG AAACCTCTGT TGTATGCTCT 34567 |||||||||| |||||| ||| |||||||||| |||||| || |||||||||| || |||||| CCAACTTTCT TCTTGGCTTA GGAAACGAAG TTTATGAACA AAACCTCTGT CGTCTGCTCT 239 TTCAGCAACA TCTTGCTTGC GCGTGGTGAT AATAACTCTG CTGCCATTCT TGCTATCCGG 34507 |||||||||| || | |||| ||||||| || ||| |||||| ||||| |||| || |||||| TTCAGCAACA TCCTCTTTGC GCGTGGTAAT AATGACTCTG CTGCCCTTCT CGCCATCCGG 299 AAATGCTCTT TTCAAACTCT CTCATGCTTC TCTCTGCCAT ATATCATCAA CCACCACAAG 34447 ||||||||| |||||||| | | |||||||| |||||||||| |||||||||| |||| ||||| GAATGCTCTT TTCAAACTTT CCCATGCTTC TCTCTGCCAT ATATCATCAA CCACTACAAG 359 GTATTTGCGT TTTTTTAAAA GATTACGAAG GTAAATTTCT AGATCTCTCT CTGTCATCCT 34387 |||||||||| | ||| | | ||| |||||| || | ||||| |||||||| | | |||| | GTATTTGCGT TCTTTCAGTA GATCACGAAG GTGATTTTCT AGATCTCTTT CATCCATCTT 419 TTCCAACAAA TCTAGAGTTT CCTTGGTGCA ACCTTGGATG GATTTTATGA TATACCTGAG 34327 ||||||||| |||||||| || ||||||| |||||||||| |||||||||| || | | || TTCCAACAAT CCTAGAGTTC CCATGGTGCA ACCTTGGATG GATTTTATGA TAGTCTTAAG 479 GAGATCCACA GTGTTGTACT CTTGAGAAAC ACATATCCAA GCTCGTGTAT GGAAGCTATT 34267 ||||||| |||||||||| |||||||||| |||||||||| || |||||| | || |||| AAGATCCATT GTGTTGTACT CTTGAGAAAC ACATATCCAA GCACGTGTAG GCCAGGTATT 539 GACTATATCA GGACTGATGT AGAGATTTCT TGCAAGAGTG GTCTTGC 34220 ||||||| | ||||| ||| |||| ||||| |||||||||| ||||||| GACTATACGA GGACTTCTGT AGAGGTTTCT TGCAAGAGTG GTCTTGC 586 hqPGS_C04HBa0127E11.1-_SGN-E308984- (34805 34220) ******************************************************************************** EST sequence 129 +strand 469 n (File: SGN-E258424+) 1 GTGTTTTCAG CCTTGACCAC TCGATCTTCT GGAAACATAC CAAAGTAGAG AAAACACTGC 61 TTGAGCTCAA TTGACAAATC ATTGTAGCTT AGTGATAGTA TGTTGGAGAT TTCAACAGAT 121 TTATCTTCTT TAATGCTCTT CCAAAGGTGA TCTTTCACCT TTTGCCATTC ATCTAGATCC 181 TTTTTATGCG AAAGTAGTCC GCTCAATACA ACAATTGCAA GAGGTAAACC TCTACACTTT 241 TCCACCATAT CCTTAGCTAG ACTTTCCATT TCTGCAACCA TTGCTCGAAC ATCAAGTAGT 301 TTCCTAAGAA AGAGATCCCA ACTTTCTTCT TGACTTAGGA AACGAAGTTT ATGAACAAAA 361 CCTCTGTCGG CTGCTCTTTC AGCGATATCC TCTTTGCGCG TGGTAATAAT GACTCTGCTG 421 CCATTCTTGT CATCCGGGAA TGCTCTTTTC AAACTCTCCC ATGCTTCTC Predicted gene structure (within gDNA segment 35918 to 33766): Exon 1 34938 34475 ( 464 n); cDNA 3 469 ( 467 n); score: 0.865 MATCH C04HBa0127E11.1- SGN-E258424+ 0.865 464 0.989 C PGS_C04HBa0127E11.1-_SGN-E258424+ (34938 34475) Alignment (genomic DNA sequence = upper lines): GTTTTCAGCC TCGAGCTCTT GATCTTCTGG AAAAATACCG AAGTAGAGAA AACACTGCTT 34879 |||||||||| | || | || |||||||||| ||| ||||| |||||||||| |||||||||| GTTTTCAGCC TTGACCACTC GATCTTCTGG AAACATACCA AAGTAGAGAA AACACTGCTT 62 GAGCTCAGTT GACAAATCAT TGTAGCTTAA TGATAGTATG TAGGAGATTT CAATAGA--- 34822 ||||||| || |||||||||| ||||||||| |||||||||| | |||||||| ||| ||| GAGCTCAATT GACAAATCAT TGTAGCTTAG TGATAGTATG TTGGAGATTT CAACAGATTT 122 GTCTTCTTCA ATGTTCTTCC AAAGGCGGTC TTTCACCTTT TTCCATTCGC CTGGCCCCCT 34762 ||||||| | ||| |||||| ||||| | || |||||||||| | |||||| || | || | ATCTTCTTTA ATGCTCTTCC AAAGGTGATC TTTCACCTTT TGCCATTCAT CTAGATCCTT 182 TTTATGCGAA AGTAGTCCGC TCAATACAAC AATTGCAAGA GGTAAGCCTC CACACTTATC 34702 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||| || TTTATGCGAA AGTAGTCCGC TCAATACAAC AATTGCAAGA GGTAAACCTC TACACTTTTC 242 CACCATATCC TTAGCTAGCC TCTCCATTGT GGAGGTCATT GCTCGAACAT CAAGTAGTTT 34642 |||||||||| |||||||| | | |||||| | |||| |||||||||| |||||||||| CACCATATCC TTAGCTAGAC TTTCCATTTC TGCAACCATT GCTCGAACAT CAAGTAGTTT 302 CCTGCAAAAG AGATCCCAAC TTTCTTCTTG GTTTAGGAAA CGAAGTTTAT GGACGAAACC 34582 ||| |||| |||||||||| |||||||||| |||||||| |||||||||| | || ||||| CCTAAGAAAG AGATCCCAAC TTTCTTCTTG ACTTAGGAAA CGAAGTTTAT GAACAAAACC 362 TCTGTTGTAT GCTCTTTCAG CAACATCTTG CTTGCGCGTG GTGATAATAA CTCTGCTGCC 34522 ||||| | | |||||||||| | | ||| | ||||||||| || ||||| | |||||||||| TCTGTCGGCT GCTCTTTCAG CGATATCCTC TTTGCGCGTG GTAATAATGA CTCTGCTGCC 422 ATTCTTGCTA TCCGGAAATG CTCTTTTCAA ACTCTCTCAT GCTTCTC 34475 ||||||| | ||||| |||| |||||||||| |||||| ||| ||||||| ATTCTTGTCA TCCGGGAATG CTCTTTTCAA ACTCTCCCAT GCTTCTC 469 hqPGS_C04HBa0127E11.1-_SGN-E258424+ (34938 34475) ******************************************************************************** EST sequence 123 +strand 396 n (File: SGN-E258522+) 1 GTGTGTTTTC AGCCTTGACC ACTCGATCTT CTGGAAACAT ACCAAAGTAG AGAAAACACT 61 GCTTGAGCTC AATTGACAAA TCATTGTAGC TTAGTGATAG TATGTTGGAG ATTTCAACAG 121 ATTTATCTTC TTTAATGCTC TTCCAAAGGT GATCTTTCAC CTTTTGCCAT TCATCTAGAT 181 CCTTTTTATG CGAAAGTAGT CCGCTCAATA CAACAATTGC AAGAGGTAAA CCTCTACACT 241 TTTCCACCAT ATCCTTAGCT AGACTTTCCA TTTCTGCAAC CATTGCTCGA ACATCAAGTA 301 GTTTCCTAAG AAAGAGATCC CAACTTTCTT CTTGACTTAG GAAACGAAGT TTATGAACAA 361 AACCTCTGTC GGCTGCTCTT TCAACGATAT CCTCTT Predicted gene structure (within gDNA segment 35938 to 33571): Exon 1 34938 34555 ( 384 n); cDNA 5 391 ( 387 n); score: 0.858 MATCH C04HBa0127E11.1- SGN-E258522+ 0.858 384 0.970 C PGS_C04HBa0127E11.1-_SGN-E258522+ (34938 34555) Alignment (genomic DNA sequence = upper lines): GTTTTCAGCC TCGAGCTCTT GATCTTCTGG AAAAATACCG AAGTAGAGAA AACACTGCTT 34879 |||||||||| | || | || |||||||||| ||| ||||| |||||||||| |||||||||| GTTTTCAGCC TTGACCACTC GATCTTCTGG AAACATACCA AAGTAGAGAA AACACTGCTT 64 GAGCTCAGTT GACAAATCAT TGTAGCTTAA TGATAGTATG TAGGAGATTT CAATAGA--- 34822 ||||||| || |||||||||| ||||||||| |||||||||| | |||||||| ||| ||| GAGCTCAATT GACAAATCAT TGTAGCTTAG TGATAGTATG TTGGAGATTT CAACAGATTT 124 GTCTTCTTCA ATGTTCTTCC AAAGGCGGTC TTTCACCTTT TTCCATTCGC CTGGCCCCCT 34762 ||||||| | ||| |||||| ||||| | || |||||||||| | |||||| || | || | ATCTTCTTTA ATGCTCTTCC AAAGGTGATC TTTCACCTTT TGCCATTCAT CTAGATCCTT 184 TTTATGCGAA AGTAGTCCGC TCAATACAAC AATTGCAAGA GGTAAGCCTC CACACTTATC 34702 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||| || TTTATGCGAA AGTAGTCCGC TCAATACAAC AATTGCAAGA GGTAAACCTC TACACTTTTC 244 CACCATATCC TTAGCTAGCC TCTCCATTGT GGAGGTCATT GCTCGAACAT CAAGTAGTTT 34642 |||||||||| |||||||| | | |||||| | |||| |||||||||| |||||||||| CACCATATCC TTAGCTAGAC TTTCCATTTC TGCAACCATT GCTCGAACAT CAAGTAGTTT 304 CCTGCAAAAG AGATCCCAAC TTTCTTCTTG GTTTAGGAAA CGAAGTTTAT GGACGAAACC 34582 ||| |||| |||||||||| |||||||||| |||||||| |||||||||| | || ||||| CCTAAGAAAG AGATCCCAAC TTTCTTCTTG ACTTAGGAAA CGAAGTTTAT GAACAAAACC 364 TCTGTTGTAT GCTCTTTCAG CAACATC 34555 ||||| | | ||||||||| | | ||| TCTGTCGGCT GCTCTTTCAA CGATATC 391 hqPGS_C04HBa0127E11.1-_SGN-E258522+ (34938 34555) ******************************************************************************** EST sequence 30 +strand 586 n (File: SGN-E308984+) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 301 AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 421 GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 481 TGGAAAAGTG TAGAGGCTTA CCTCTTGCGA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGGGCT AAACGAATGG AAAAAGGTGA AAGATCACCT TTGGAA Predicted gene structure (within gDNA segment 37941 to 40781): Exon 1 39126 39712 ( 587 n); cDNA 1 586 ( 586 n); score: 0.913 MATCH C04HBa0127E11.1+ SGN-E308984+ 0.913 587 1.002 C PGS_C04HBa0127E11.1+_SGN-E308984+ (39126 39712) Alignment (genomic DNA sequence = upper lines): GCAAGACCAC TCTTGCAAGA AACCTTTACA TCAATCCTAA TATAGCCTCT AGCTTCTCTA 39185 |||||||||| |||||||||| ||||| |||| | |||| ||||| | | | || ||| GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 60 CACACGCTTG GATATGTGTT TCTCAAGAGT ATAACACAAT GGATCTTCTT AAAACTATTA 39245 ||| ||||| |||||||||| |||||||||| | |||||||| |||||||||| || ||||| | CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 120 TAAAATCCAT CCGAGGTCGC ACCAAGGAAA CTCTGGATTT GTTGGAAAAG ATGGATGAAA 39305 |||||||||| || |||| || |||| || || |||| | || |||||||||| |||||||||| TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 180 GAGATCTAGA AAACCACCTT CGTGATCTAT TGAAAGAACG CAAATACCTC GTGGTGGTTG 39365 |||||||||| ||| |||||| ||||||||| |||||||||| ||||||||| || ||||||| GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 240 ATGATGTCTG GCAGAGAGAA GCATGGGAGA GTTTGAAAAG AGCATTCCCG GATGGCAAGA 39425 ||||| | || |||||||||| |||||||| | |||||||||| |||||||||| |||||| ||| ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 300 ATGGCAGCAG AGTCATTGTT ACCACGCGCA AAGAGGATGT CGCTGAAAGA GCAGCCGACA 39485 | |||||||| ||||||| || |||||||||| |||||||||| ||||||||| |||| ||||| AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 360 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CACTTTCTTA 39545 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| | |||| | GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 420 GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT AAGGATATGG 39605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 480 TGGAAAAAGT GTAGAGGCTT ACCTCTTGCA ATTGTTGTAT TGAGCGGACT ACTTTCACAT 39665 ||| |||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| TGG-AAAAGT GTAGAGGCTT ACCTCTTGCG ATTGTTGTAT TGAGCGGACT ACTTTCGCAT 539 AAAAAGGAGC TAGATGAATG GCAAAAGGTG AAAGACCACC TTTGGAA 39712 ||||||| || || | ||||| | |||||||| ||||| |||| ||||||| AAAAAGGGGC TAAACGAATG GAAAAAGGTG AAAGATCACC TTTGGAA 586 hqPGS_C04HBa0127E11.1+_SGN-E308984+ (39126 39712) ******************************************************************************** EST sequence 94 -strand 641 n (File: SGN-E255576-) 1 CAAGAGTACA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGGTCGCACC 61 ATGGGAACTC TAGGATTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 121 GATCTATTGA AAGAACGCAA ATACCTTGTG GTGGTTGATG ATGTCTGGCA AAGAGAAGCA 181 TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GACAAGAATG GCAGCAGAGT CATTATTACC 241 ACGCGCAAAG AGGATATCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 301 TTCCTAAGTC AAGAAGAAAG TTGGGATCTC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 361 ATGGTTGCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAGTGTAG AGGTTTACCT 421 CTTGCAATTG TTGTATTGAG CGGACTACTT TCGCATAAAA AGGATCTAGA TGAATGGCAA 481 AAGGTGAAAG ATCACCTTTG GAAGAGCATT AAAGAAGATA AATCTGTTGA AATCTCCAAC 541 ATACTATCAC TAAGCTACAA TGATTTGTCA ATTGAGCTCA AGCAGTGTTT TCTCTACTTT 601 GGTATGTTTC CAGAAGATCG AGTGGTCAAG GCTGAAAACA C Predicted gene structure (within gDNA segment 37924 to 41800): Exon 1 39209 39846 ( 638 n); cDNA 1 640 ( 640 n); score: 0.930 MATCH C04HBa0127E11.1+ SGN-E255576- 0.930 638 0.995 C PGS_C04HBa0127E11.1+_SGN-E255576- (39209 39846) Alignment (genomic DNA sequence = upper lines): CAAGAGTATA ACACAATGGA TCTTCTTAAA ACTATTATAA AATCCATCCG AGGTCGCACC 39268 |||||||| | |||||||||| ||||||||| ||||| |||| ||||||||| |||||||||| CAAGAGTACA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGGTCGCACC 60 AAGGAAACTC TGGATTTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 39328 | || ||||| | | ||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGAACTC TAGGATTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 120 GATCTATTGA AAGAACGCAA ATACCTCGTG GTGGTTGATG ATGTCTGGCA GAGAGAAGCA 39388 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| GATCTATTGA AAGAACGCAA ATACCTTGTG GTGGTTGATG ATGTCTGGCA AAGAGAAGCA 180 TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GGCAAGAATG GCAGCAGAGT CATTGTTACC 39448 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||| ||||| TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GACAAGAATG GCAGCAGAGT CATTATTACC 240 ACGCGCAAAG AGGATGTCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 39508 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCGCAAAG AGGATATCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 300 TTCCTAAGTC AAGAAGAAAG TTGGGATCAC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 39568 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTCCTAAGTC AAGAAGAAAG TTGGGATCTC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 360 ATGGTTCCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAAGTGTA GAGGCTTACC 39628 |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| |||| ||||| ATGGTTGCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG -AAAAGTGTA GAGGTTTACC 419 TCTTGCAATT GTTGTATTGA GCGGACTACT TTCACATAAA AAGGAGCTAG ATGAATGGCA 39688 |||||||||| |||||||||| |||||||||| ||| |||||| ||||| |||| |||||||||| TCTTGCAATT GTTGTATTGA GCGGACTACT TTCGCATAAA AAGGATCTAG ATGAATGGCA 479 AAAGGTGAAA GACCACCTTT GGAAGAACAT T--A-AAGAT GACTCTACTG AAATCTCCTA 39745 |||||||||| || ||||||| |||||| ||| | | ||||| | ||| || |||||||| | AAAGGTGAAA GATCACCTTT GGAAGAGCAT TAAAGAAGAT AAATCTGTTG AAATCTCCAA 539 CATACTATCA TTAAGCTACA ACGATTTGTC AACTGCACTC AAGCAGTGTT TTCTCTACTT 39805 |||||||||| ||||||||| | |||||||| || || ||| |||||||||| |||||||||| CATACTATCA CTAAGCTACA ATGATTTGTC AATTGAGCTC AAGCAGTGTT TTCTCTACTT 599 TGGTATTTTT CCAGAAGATC AAGAGCTCGA GGCTGAAAAC A 39846 |||||| ||| |||||||||| || | || | |||||||||| | TGGTATGTTT CCAGAAGATC GAGTGGTCAA GGCTGAAAAC A 640 hqPGS_C04HBa0127E11.1+_SGN-E255576- (39209 39846) ******************************************************************************** EST sequence 130 -strand 469 n (File: SGN-E258424-) 1 GAGAAGCATG GGAGAGTTTG AAAAGAGCAT TCCCGGATGA CAAGAATGGC AGCAGAGTCA 61 TTATTACCAC GCGCAAAGAG GATATCGCTG AAAGAGCAGC CGACAGAGGT TTTGTTCATA 121 AACTTCGTTT CCTAAGTCAA GAAGAAAGTT GGGATCTCTT TCTTAGGAAA CTACTTGATG 181 TTCGAGCAAT GGTTGCAGAA ATGGAAAGTC TAGCTAAGGA TATGGTGGAA AAGTGTAGAG 241 GTTTACCTCT TGCAATTGTT GTATTGAGCG GACTACTTTC GCATAAAAAG GATCTAGATG 301 AATGGCAAAA GGTGAAAGAT CACCTTTGGA AGAGCATTAA AGAAGATAAA TCTGTTGAAA 361 TCTCCAACAT ACTATCACTA AGCTACAATG ATTTGTCAAT TGAGCTCAAG CAGTGTTTTC 421 TCTACTTTGG TATGTTTCCA GAAGATCGAG TGGTCAAGGC TGAAAACAC Predicted gene structure (within gDNA segment 38771 to 41800): Exon 1 39381 39846 ( 466 n); cDNA 1 468 ( 468 n); score: 0.928 MATCH C04HBa0127E11.1+ SGN-E258424- 0.928 466 0.994 C PGS_C04HBa0127E11.1+_SGN-E258424- (39381 39846) Alignment (genomic DNA sequence = upper lines): GAGAAGCATG GGAGAGTTTG AAAAGAGCAT TCCCGGATGG CAAGAATGGC AGCAGAGTCA 39440 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAGAAGCATG GGAGAGTTTG AAAAGAGCAT TCCCGGATGA CAAGAATGGC AGCAGAGTCA 60 TTGTTACCAC GCGCAAAGAG GATGTCGCTG AAAGAGCAGC CGACAGAGGT TTTGTTCATA 39500 || ||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TTATTACCAC GCGCAAAGAG GATATCGCTG AAAGAGCAGC CGACAGAGGT TTTGTTCATA 120 AACTTCGTTT CCTAAGTCAA GAAGAAAGTT GGGATCACTT TCTTAGGAAA CTACTTGATG 39560 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| AACTTCGTTT CCTAAGTCAA GAAGAAAGTT GGGATCTCTT TCTTAGGAAA CTACTTGATG 180 TTCGAGCAAT GGTTCCAGAA ATGGAAAGTC TAGCTAAGGA TATGGTGGAA AAAGTGTAGA 39620 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||| | |||||||||| TTCGAGCAAT GGTTGCAGAA ATGGAAAGTC TAGCTAAGGA TATGGTGG-A AAAGTGTAGA 239 GGCTTACCTC TTGCAATTGT TGTATTGAGC GGACTACTTT CACATAAAAA GGAGCTAGAT 39680 || ||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||| |||||| GGTTTACCTC TTGCAATTGT TGTATTGAGC GGACTACTTT CGCATAAAAA GGATCTAGAT 299 GAATGGCAAA AGGTGAAAGA CCACCTTTGG AAGAACATT- -A-AAGATGA CTCTACTGAA 39737 |||||||||| |||||||||| ||||||||| |||| |||| | ||||| | ||| |||| GAATGGCAAA AGGTGAAAGA TCACCTTTGG AAGAGCATTA AAGAAGATAA ATCTGTTGAA 359 ATCTCCTACA TACTATCATT AAGCTACAAC GATTTGTCAA CTGCACTCAA GCAGTGTTTT 39797 |||||| ||| |||||||| | ||||||||| |||||||||| || ||||| |||||||||| ATCTCCAACA TACTATCACT AAGCTACAAT GATTTGTCAA TTGAGCTCAA GCAGTGTTTT 419 CTCTACTTTG GTATTTTTCC AGAAGATCAA GAGCTCGAGG CTGAAAACA 39846 |||||||||| |||| ||||| |||||||| | | | || ||| ||||||||| CTCTACTTTG GTATGTTTCC AGAAGATCGA GTGGTCAAGG CTGAAAACA 468 hqPGS_C04HBa0127E11.1+_SGN-E258424- (39381 39846) ******************************************************************************** EST sequence 124 -strand 396 n (File: SGN-E258522-) 1 AAGAGGATAT CGTTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 61 GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTG 121 CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA 181 TTGTTGTATT GAGCGGACTA CTTTCGCATA AAAAGGATCT AGATGAATGG CAAAAGGTGA 241 AAGATCACCT TTGGAAGAGC ATTAAAGAAG ATAAATCTGT TGAAATCTCC AACATACTAT 301 CACTAAGCTA CAATGATTTG TCAATTGAGC TCAAGCAGTG TTTTCTCTAC TTTGGTATGT 361 TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA ACACAC Predicted gene structure (within gDNA segment 38729 to 41820): Exon 1 39456 39846 ( 391 n); cDNA 1 393 ( 393 n); score: 0.917 MATCH C04HBa0127E11.1+ SGN-E258522- 0.917 391 0.987 C PGS_C04HBa0127E11.1+_SGN-E258522- (39456 39846) Alignment (genomic DNA sequence = upper lines): AAGAGGATGT CGCTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 39515 |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGATAT CGTTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 60 GTCAAGAAGA AAGTTGGGAT CACTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTC 39575 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTG 120 CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAAGT GTAGAGGCTT ACCTCTTGCA 39635 |||||||||| |||||||||| |||||||||| ||| |||||| ||||||| || |||||||||| CAGAAATGGA AAGTCTAGCT AAGGATATGG TGG-AAAAGT GTAGAGGTTT ACCTCTTGCA 179 ATTGTTGTAT TGAGCGGACT ACTTTCACAT AAAAAGGAGC TAGATGAATG GCAAAAGGTG 39695 |||||||||| |||||||||| |||||| ||| |||||||| | |||||||||| |||||||||| ATTGTTGTAT TGAGCGGACT ACTTTCGCAT AAAAAGGATC TAGATGAATG GCAAAAGGTG 239 AAAGACCACC TTTGGAAGAA CATT--A-AA GATGACTCTA CTGAAATCTC CTACATACTA 39752 ||||| |||| ||||||||| |||| | || ||| | ||| ||||||||| | |||||||| AAAGATCACC TTTGGAAGAG CATTAAAGAA GATAAATCTG TTGAAATCTC CAACATACTA 299 TCATTAAGCT ACAACGATTT GTCAACTGCA CTCAAGCAGT GTTTTCTCTA CTTTGGTATT 39812 ||| |||||| |||| ||||| ||||| || |||||||||| |||||||||| ||||||||| TCACTAAGCT ACAATGATTT GTCAATTGAG CTCAAGCAGT GTTTTCTCTA CTTTGGTATG 359 TTTCCAGAAG ATCAAGAGCT CGAGGCTGAA AACA 39846 |||||||||| ||| || | | | |||||||| |||| TTTCCAGAAG ATCGAGTGGT CAAGGCTGAA AACA 393 hqPGS_C04HBa0127E11.1+_SGN-E258522- (39456 39846) ******************************************************************************** EST sequence 51 -strand 710 n (File: SGN-E369657-) 1 GCATTTCCCT GAAAAAGTTT ATGAGTCTAA AGAGAATTTG CGCAAGTGTG CTGAGTCTGC 61 CTTAGAATCT TTCATTGGAG ATCTTTCACA TACATATTTT GTTGGAAATG CCCCTATGGG 121 TCATATGGTC ATGCAACCCA CTGAAGACAA GAAAATCCCT TCAATCAAGC GCTTCTTCTT 181 CAAATCCCAA GTTATTGCAG CCAACAAATT TGATATTAGG AAATGTGATG ATTTTGTCTG 241 GGTGACCAAA GATGAACTGT TGGAATACTT TCCCGAGCAA GCTGAATTCC TGAACAAGAT 301 GATCATCAGC TGACGTTAGT TTCTGCTCAA ACTTCAGGCT TCGTAGGATA GCGGAAATAG 361 TTTTGATCTG AAAAATCCAT TTCTTCCCGC AAATGCAATG GGCTTGGACT GCTGGAGACT 421 GATTTTTATG TCTCGACAGT CTGACTAGCA TGCCATTCAT CAAGTCCTGT AGAATTTTGA 481 ACATAGGATA CCTAAATTAT GATAGCCTTC TGCCTCAGCT ATCACCAATC CTCTTTGTGA 541 GAAGCTATGC TAAAAACTCT GAAATAGTCA TGAATTTTAG TATGAATATG CTTTTGTAGA 601 TGCACGATTT CATCTCGCGT CATAAAATAA ACAAAACAAA TTACATGTTG CAGCCTTAAC 661 GAGTTGCGAG CTTTGTTTCA TAGCTGCATT GTGCATAGAG AAAAAAAAAA Predicted gene structure (within gDNA segment 44343 to 42113): Exon 1 43733 43688 ( 46 n); cDNA 1 46 ( 46 n); score: 0.978 Intron 1 43687 43602 ( 86 n); Pd: 0.998 (s: 0.98), Pa: 0.950 (s: 1.00) Exon 2 43601 43479 ( 123 n); cDNA 47 169 ( 123 n); score: 1.000 Intron 2 43478 43326 ( 153 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 43325 42793 ( 533 n); cDNA 170 702 ( 533 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E369657- 1.000 702 0.989 C PGS_C04HBa0127E11.1-_SGN-E369657- (43733 43688,43601 43479,43325 42793) Alignment (genomic DNA sequence = upper lines): GCATTTCCCT GAAAAAGTTT ATGAGTCTGA AGAGAATTTG CGCAAGGTAA ATAGTACTTA 43674 |||||||||| |||||||||| |||||||| | |||||||||| |||||| GCATTTCCCT GAAAAAGTTT ATGAGTCTAA AGAGAATTTG CGCAAG.... .......... 46 TCAGTCCATT TCTATGCTGA TTTCAGTAAT TTGGGTTAGG AAAATGAAAA TATAAGTTGC 43614 .......... .......... .......... .......... .......... .......... 46 AACTATTTGC AGTGTGCTGA GTCTGCCTTA GAATCTTTCA TTGGAGATCT TTCACATACA 43554 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..TGTGCTGA GTCTGCCTTA GAATCTTTCA TTGGAGATCT TTCACATACA 94 TATTTTGTTG GAAATGCCCC TATGGGTCAT ATGGTCATGC AACCCACTGA AGACAAGAAA 43494 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTGTTG GAAATGCCCC TATGGGTCAT ATGGTCATGC AACCCACTGA AGACAAGAAA 154 ATCCCTTCAA TCAAGGTATG TACATTTTAA TTATTGAAAG TATTGAAGAA AAAGAGAGTA 43434 |||||||||| ||||| ATCCCTTCAA TCAAG..... .......... .......... .......... .......... 169 AAGAAATTCT CTCATCCCAC GGTGAGTGAG GGACGGAAGG AGGGAAATTT CCTGATAGCT 43374 .......... .......... .......... .......... .......... .......... 169 TCTGCAAATT TTTGTGCTTC TTATATATTC TATATTTTAT TGTGGCAGCG CTTCTTCTTC 43314 || |||||||||| .......... .......... .......... .......... ........CG CTTCTTCTTC 181 AAATCCCAAG TTATTGCAGC CAACAAATTT GATATTAGGA AATGTGATGA TTTTGTCTGG 43254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCCCAAG TTATTGCAGC CAACAAATTT GATATTAGGA AATGTGATGA TTTTGTCTGG 241 GTGACCAAAG ATGAACTGTT GGAATACTTT CCCGAGCAAG CTGAATTCCT GAACAAGATG 43194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCAAAG ATGAACTGTT GGAATACTTT CCCGAGCAAG CTGAATTCCT GAACAAGATG 301 ATCATCAGCT GACGTTAGTT TCTGCTCAAA CTTCAGGCTT CGTAGGATAG CGGAAATAGT 43134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCAGCT GACGTTAGTT TCTGCTCAAA CTTCAGGCTT CGTAGGATAG CGGAAATAGT 361 TTTGATCTGA AAAATCCATT TCTTCCCGCA AATGCAATGG GCTTGGACTG CTGGAGACTG 43074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATCTGA AAAATCCATT TCTTCCCGCA AATGCAATGG GCTTGGACTG CTGGAGACTG 421 ATTTTTATGT CTCGACAGTC TGACTAGCAT GCCATTCATC AAGTCCTGTA GAATTTTGAA 43014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTATGT CTCGACAGTC TGACTAGCAT GCCATTCATC AAGTCCTGTA GAATTTTGAA 481 CATAGGATAC CTAAATTATG ATAGCCTTCT GCCTCAGCTA TCACCAATCC TCTTTGTGAG 42954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGGATAC CTAAATTATG ATAGCCTTCT GCCTCAGCTA TCACCAATCC TCTTTGTGAG 541 AAGCTATGCT AAAAACTCTG AAATAGTCAT GAATTTTAGT ATGAATATGC TTTTGTAGAT 42894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTATGCT AAAAACTCTG AAATAGTCAT GAATTTTAGT ATGAATATGC TTTTGTAGAT 601 GCACGATTTC ATCTCGCGTC ATAAAATAAA CAAAACAAAT TACATGTTGC AGCCTTAACG 42834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACGATTTC ATCTCGCGTC ATAAAATAAA CAAAACAAAT TACATGTTGC AGCCTTAACG 661 AGTTGCGAGC TTTGTTTCAT AGCTGCATTG TGCATAGAGA A 42793 |||||||||| |||||||||| |||||||||| |||||||||| | AGTTGCGAGC TTTGTTTCAT AGCTGCATTG TGCATAGAGA A 702 hqPGS_C04HBa0127E11.1-_SGN-E369657- (43733 43688,43601 43479,43325 42793) ******************************************************************************** EST sequence 50 -strand 859 n (File: SGN-E546310-) 1 AGAGTATCCA GAAAGTTTTC TGAAGAAGTC TGATACCAGG GGAAAAGGTG ATTATCAAAT 61 TGATTATAAA CCAGCTCCTC GAATCTCAGA AGCAGATAAG ACTAATGATC AAAGGTCATT 121 ACAGCGAGCA CTAGACAAGA GACTCTATCT TCTAGTCCAT GGTACCACAC AAGGTAGTGG 181 AAAGCCTGTC TGGCATTTCC CTGAAAAAGC TTACGAGTCT GAAGAGAATT TGCGCAAGTG 241 TGCTGAGTCT GCCTTGGAAT CTTTCATTGG AGATCTTTCA CATACATATT TTGTTGGAAA 301 TGCCCCTATG GGTCATATGG TCATGCAACC CACTGAAGAC AACAAAATCC CTTCAATCAA 361 GCGCTTCTTC TTCAAATCCC AAGTTATTGC AGCCAACAAA TTTGATATTA GGAAATGTGA 421 TGATTTTGTC TGGCTGACCA AAGATGAACT GTTGGAATAC TTTCCTGAGC AAGCTGAATT 481 CCTGAACAAG ATGATCATCA GCTGATGTTA GTTTCTGCTC AAACTTCAGG CTTCGTAGGA 541 TAGCGGAAAT AGTTTTGATC TGAAAAATCC ATTTCTTCCC GCAAATGCAA TGGCTTGGAC 601 TGCTGGAGAC AGATTTTTAT GTCTCGACAG TCTGACTAGC GTGCCATTCA TCAAGTCCTG 661 TAGAATTTTG AACATAGGAT ACCTAAATTA TGATAGCCTT CTGCCTCAGC TATCACCAAT 721 CCTCTTTGTG AGAAGCTATG CTAAGAACTC TGAAGTAGTG ATGAATTCAG TATGAATATG 781 CTTTTGTAGA TGCACGATTT CATCTCGTGT CGTAAAATAA ACAGAACANA ATTACATGTT 841 GCAGCCTTAA AAAAAAAAA Predicted gene structure (within gDNA segment 45402 to 41758): Exon 1 44792 44754 ( 39 n); cDNA 1 39 ( 39 n); score: 1.000 Intron 1 44753 44336 ( 418 n); Pd: 0.750 (s: 0), Pa: 0.977 (s: 1.00) Exon 2 44335 44261 ( 75 n); cDNA 40 114 ( 75 n); score: 1.000 Intron 2 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 3 43811 43688 ( 124 n); cDNA 115 238 ( 124 n); score: 0.984 Intron 3 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 4 43601 43479 ( 123 n); cDNA 239 361 ( 123 n); score: 0.984 Intron 4 43478 43326 ( 153 n); Pd: 0.999 (s: 0.98), Pa: 0.992 (s: 1.00) Exon 5 43325 42833 ( 493 n); cDNA 362 853 ( 492 n); score: 0.962 Intron 5 42832 42246 ( 587 n); Pd: 0.000 (s: 0.85), Pa: 0.228 (s: 0) Exon 6 42245 42240 ( 6 n); cDNA 854 859 ( 6 n); score: 0.667 MATCH C04HBa0127E11.1- SGN-E546310- 0.972 860 1.001 C PGS_C04HBa0127E11.1-_SGN-E546310- (44792 44754,44335 44261,43811 43688,43601 43479,43325 42833,42245 42240) Alignment (genomic DNA sequence = upper lines): AGAGTATCCA GAAAGTTTTC TGAAGAAGTC TGATACCAGG TACATTGATG TTGCATTTTT 44733 |||||||||| |||||||||| |||||||||| ||||||||| AGAGTATCCA GAAAGTTTTC TGAAGAAGTC TGATACCAG. .......... .......... 39 TGAATTACAC CTTGCCATTG AATACCTTTC CTTGTGAATT ATGTATCTTC ATTTATGATG 44673 .......... .......... .......... .......... .......... .......... 39 AAATATTAAC TAATGAATGG TATGAAGAGT GTGCATAGGA TGTATGAAAT AAGTTTAAAC 44613 .......... .......... .......... .......... .......... .......... 39 ATAATAGACC AGTGAAATTG ATTTAGGAGC TGAATAGCAC AAAGAGAGCA TAAAAGTCGA 44553 .......... .......... .......... .......... .......... .......... 39 AAAGTGATGA AGATTTTCTG AGCGTTTTTC TTTACTCTAG AAATAGAGTT TGTCTAAATT 44493 .......... .......... .......... .......... .......... .......... 39 GCTTGTGTAG TATTATTGCC TTTTCAAGCA TGTGTTCTTC CTTATTAGCC ATTAAATATG 44433 .......... .......... .......... .......... .......... .......... 39 TGCATGGTTC TTCTTGAACA TGCTATCACA TACTGTTCTG TCTAGTGTCA AATGCCACAT 44373 .......... .......... .......... .......... .......... .......... 39 GGTCAGTGAC TCGGTTACAT CTATATGTTA CATGCAGGGG AAAAGGTGAT TATCAAATTG 44313 ||| |||||||||| |||||||||| .......... .......... .......... .......GGG AAAAGGTGAT TATCAAATTG 62 ATTATAAACC AGCTCCTCGA ATCTCAGAAG CAGATAAGAC TAATGATCAA AGGTACCAAA 44253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ATTATAAACC AGCTCCTCGA ATCTCAGAAG CAGATAAGAC TAATGATCAA AG........ 114 GCTTGGACTT CTAACTTTTG TCAAATATTA TACAAGAATT TGAATATGGA CATTGCACTA 44193 .......... .......... .......... .......... .......... .......... 114 GAAGATATTT TTCTTTCAAG AGTTGCTTTA CTAAATTCAG CAGACTCGTA TTTCCTGACA 44133 .......... .......... .......... .......... .......... .......... 114 ATAGATGATT ATTGACTTCT AATTGTTTAC CATAACTAAA TTTTTGATGT TGAAATGCCT 44073 .......... .......... .......... .......... .......... .......... 114 TAATATTGTC TCGAAGTAAT TGATGTGTTA GTTACATGAG ATTTTTCAAT TGCGCATTGT 44013 .......... .......... .......... .......... .......... .......... 114 GTAAGTACTT AAAATTAGGA ATGCAGCGCT ACTGTTTTTT TTTTTACCTT TTATTTGCCT 43953 .......... .......... .......... .......... .......... .......... 114 TCTTCACCCT CTCTACCCCA CAAAATAAAG CTTGCGTCTT TTTTTTCAAC TCATCACTTG 43893 .......... .......... .......... .......... .......... .......... 114 GTCAAAATTT GCTAAAAGGT GCTAACCCTA CACAAAACCT TTTCATGTTA CTAATTATGA 43833 .......... .......... .......... .......... .......... .......... 114 GATTTTATTG ATATGCATAA GGTCATTACA GCGAGCACTA GACAAGAGAC TCTATCTTCT 43773 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTCATTACA GCGAGCACTA GACAAGAGAC TCTATCTTCT 153 AGTCCATGGT ACCACACAAG GTAGTGGAAA GCCTGTCTGG CATTTCCCTG AAAAAGTTTA 43713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AGTCCATGGT ACCACACAAG GTAGTGGAAA GCCTGTCTGG CATTTCCCTG AAAAAGCTTA 213 TGAGTCTGAA GAGAATTTGC GCAAGGTAAA TAGTACTTAT CAGTCCATTT CTATGCTGAT 43653 ||||||||| |||||||||| ||||| CGAGTCTGAA GAGAATTTGC GCAAG..... .......... .......... .......... 238 TTCAGTAATT TGGGTTAGGA AAATGAAAAT ATAAGTTGCA ACTATTTGCA GTGTGCTGAG 43593 ||||||||| .......... .......... .......... .......... .......... .TGTGCTGAG 247 TCTGCCTTAG AATCTTTCAT TGGAGATCTT TCACATACAT ATTTTGTTGG AAATGCCCCT 43533 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCCTTGG AATCTTTCAT TGGAGATCTT TCACATACAT ATTTTGTTGG AAATGCCCCT 307 ATGGGTCATA TGGTCATGCA ACCCACTGAA GACAAGAAAA TCCCTTCAAT CAAGGTATGT 43473 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||| ATGGGTCATA TGGTCATGCA ACCCACTGAA GACAACAAAA TCCCTTCAAT CAAG...... 361 ACATTTTAAT TATTGAAAGT ATTGAAGAAA AAGAGAGTAA AGAAATTCTC TCATCCCACG 43413 .......... .......... .......... .......... .......... .......... 361 GTGAGTGAGG GACGGAAGGA GGGAAATTTC CTGATAGCTT CTGCAAATTT TTGTGCTTCT 43353 .......... .......... .......... .......... .......... .......... 361 TATATATTCT ATATTTTATT GTGGCAGCGC TTCTTCTTCA AATCCCAAGT TATTGCAGCC 43293 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......CGC TTCTTCTTCA AATCCCAAGT TATTGCAGCC 394 AACAAATTTG ATATTAGGAA ATGTGATGAT TTTGTCTGGG TGACCAAAGA TGAACTGTTG 43233 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AACAAATTTG ATATTAGGAA ATGTGATGAT TTTGTCTGGC TGACCAAAGA TGAACTGTTG 454 GAATACTTTC CCGAGCAAGC TGAATTCCTG AACAAGATGA TCATCAGCTG ACGTTAGTTT 43173 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| | |||||||| GAATACTTTC CTGAGCAAGC TGAATTCCTG AACAAGATGA TCATCAGCTG ATGTTAGTTT 514 CTGCTCAAAC TTCAGGCTTC GTAGGATAGC GGAAATAGTT TTGATCTGAA AAATCCATTT 43113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTCAAAC TTCAGGCTTC GTAGGATAGC GGAAATAGTT TTGATCTGAA AAATCCATTT 574 CTTCCCGCAA ATGCAATGGG CTTGGACTGC TGGAGACTGA TTTTTATGTC TCGACAGTCT 43053 |||||||||| ||||||| || |||||||||| ||||||| || |||||||||| |||||||||| CTTCCCGCAA ATGCAAT-GG CTTGGACTGC TGGAGACAGA TTTTTATGTC TCGACAGTCT 633 GACTAGCATG CCATTCATCA AGTCCTGTAG AATTTTGAAC ATAGGATACC TAAATTATGA 42993 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTAGCGTG CCATTCATCA AGTCCTGTAG AATTTTGAAC ATAGGATACC TAAATTATGA 693 TAGCCTTCTG CCTCAGCTAT CACCAATCCT CTTTGTGAGA AGCTATGCTA AAAACTCTGA 42933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TAGCCTTCTG CCTCAGCTAT CACCAATCCT CTTTGTGAGA AGCTATGCTA AGAACTCTGA 753 AATAGTCATG AATTTTAGTA TGAATATGCT TTTGTAGATG CACGATTTCA TCTCGCGTCA 42873 | |||| ||| || || |||| |||||||||| |||||||||| |||||||||| ||||| ||| AGTAGTGATG AA-TTCAGTA TGAATATGCT TTTGTAGATG CACGATTTCA TCTCGTGTCG 812 TAAAATAAAC AAAACA-AAT TACATGTTGC AGCCTTAACG AGTTGCGAGC TTTGTTTCAT 42814 |||||||||| | |||| ||| |||||||||| |||||||| | TAAAATAAAC AGAACANAAT TACATGTTGC AGCCTTAAAA A......... .......... 853 AGCTGCATTG TGCATAGAGA ATACTCTGAT TGTGATTGTA TTTGATTGTT AACTGGATGA 42754 .......... .......... .......... .......... .......... .......... 853 TCTTAAGATA CACTTGATCG ACCAAGTACT TAGACATAGA CTTTGTAGCC TTATTTGGCT 42694 .......... .......... .......... .......... .......... .......... 853 CTTGGGATCA AATGAGCAAC CTTTATCAAG GTATTACAAT AGCTATGAGA ATGACATTTT 42634 .......... .......... .......... .......... .......... .......... 853 ATTTGGACTA GTGAAAAACT TCAAATACAA CATACCGAAC ATAATCCAAT AAGTGGGGTC 42574 .......... .......... .......... .......... .......... .......... 853 TGAGAAAGGT AGTATGTACC CAGACTTTAT CCCTACCGTG AGAGATTTGA GAAAAGAAAA 42514 .......... .......... .......... .......... .......... .......... 853 CAACTAGAAG TCTGCAAAAT ACTAAAGTTT ACTGCAGTAA CTAAAGACAA TTTTCAACAA 42454 .......... .......... .......... .......... .......... .......... 853 TCTTTCTACA ACATCCTGAA ATCCAACAAA ATGTTCACCT TGATCATCCA CATTGGAGTT 42394 .......... .......... .......... .......... .......... .......... 853 GGTTCTCCTC AATATTGTTA CCATGGAAGA CTGTTCCCCT GCATTATTAT CGATATTTGT 42334 .......... .......... .......... .......... .......... .......... 853 AATACCATAA GTCTCTCATT TGCGAGAGAT ATCCATGATT CTTTGCTTGA GTGATTGAAT 42274 .......... .......... .......... .......... .......... .......... 853 CTCCTTGGCA TCTTGGCGAC ATTTGTAGAA TTAA 42240 || || .......... .......... ........AA AAAA 859 hqPGS_C04HBa0127E11.1-_SGN-E546310- (44792 44754,44335 44261,43811 43688,43601 43479,43325 42833) ******************************************************************************** EST sequence 106 +strand 635 n (File: SGN-E353373+) 1 AGAATTTGCG CAAGTGTGCT GAGTCTGCCT TAGAATCTTT CATTGGAGAT CTTTCACATA 61 CATATTTTGT TGGAAATGCC CCTATGGGTC ATATGGTCAT GCAACCCACT GAAGACAAGA 121 AAATCCCTTC AATCAAGCGC TTCTTCTTCA AATCCCAAGT TATTGCAGCC AACAAATTTG 181 ATATTAGGAA ATGTGATGAT TTTGTCTGGG TGACCAAAGA TGAACTGTTG GAATACTTTC 241 CCGAGCAAGC TGAATTCCTG AACAAGATGA TCATCAGCTG ACGTTAGTTT CTGCTCAAAC 301 TTCAGGCTTC GTAGGATAGC GGAAATAGTT TTGATCTGAA AAATCCATTT CTTCCCGCAA 361 ATGCAATGGG CTTGGACTGC TGGAGACTGA TTTTTATGTC TCGACAGTCT GACTAGCATG 421 CCATTCATCA AGTCCTGTAG AATTTTGAAC ATAGGATACC TAAATTATGA TAGCCTTCTG 481 CCTCAGCTAT CACCAATCCT CTTTGTGAGA AGCTATGCTA AAAACTCTGA AATAGTCATG 541 AATTTTAGTA TGAATATGCT TTTGTAGATG CACGATTTCA TCTCGCGTCA TAAAATAAAC 601 AAAACAAATT ACATGTTGCA GCCTTTAAAA AAAAA Predicted gene structure (within gDNA segment 44323 to 42128): Exon 1 43701 43688 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 43687 43602 ( 86 n); Pd: 0.998 (s: 0), Pa: 0.950 (s: 1.00) Exon 2 43601 43479 ( 123 n); cDNA 15 137 ( 123 n); score: 1.000 Intron 2 43478 43326 ( 153 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 43325 42838 ( 488 n); cDNA 138 625 ( 488 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E353373+ 1.000 625 0.984 C PGS_C04HBa0127E11.1-_SGN-E353373+ (43701 43688,43601 43479,43325 42838) Alignment (genomic DNA sequence = upper lines): AGAATTTGCG CAAGGTAAAT AGTACTTATC AGTCCATTTC TATGCTGATT TCAGTAATTT 43642 |||||||||| |||| AGAATTTGCG CAAG...... .......... .......... .......... .......... 14 GGGTTAGGAA AATGAAAATA TAAGTTGCAA CTATTTGCAG TGTGCTGAGT CTGCCTTAGA 43582 |||||||||| |||||||||| .......... .......... .......... .......... TGTGCTGAGT CTGCCTTAGA 34 ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA AATGCCCCTA TGGGTCATAT 43522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA AATGCCCCTA TGGGTCATAT 94 GGTCATGCAA CCCACTGAAG ACAAGAAAAT CCCTTCAATC AAGGTATGTA CATTTTAATT 43462 |||||||||| |||||||||| |||||||||| |||||||||| ||| GGTCATGCAA CCCACTGAAG ACAAGAAAAT CCCTTCAATC AAG....... .......... 137 ATTGAAAGTA TTGAAGAAAA AGAGAGTAAA GAAATTCTCT CATCCCACGG TGAGTGAGGG 43402 .......... .......... .......... .......... .......... .......... 137 ACGGAAGGAG GGAAATTTCC TGATAGCTTC TGCAAATTTT TGTGCTTCTT ATATATTCTA 43342 .......... .......... .......... .......... .......... .......... 137 TATTTTATTG TGGCAGCGCT TCTTCTTCAA ATCCCAAGTT ATTGCAGCCA ACAAATTTGA 43282 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......CGCT TCTTCTTCAA ATCCCAAGTT ATTGCAGCCA ACAAATTTGA 181 TATTAGGAAA TGTGATGATT TTGTCTGGGT GACCAAAGAT GAACTGTTGG AATACTTTCC 43222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGGAAA TGTGATGATT TTGTCTGGGT GACCAAAGAT GAACTGTTGG AATACTTTCC 241 CGAGCAAGCT GAATTCCTGA ACAAGATGAT CATCAGCTGA CGTTAGTTTC TGCTCAAACT 43162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGCAAGCT GAATTCCTGA ACAAGATGAT CATCAGCTGA CGTTAGTTTC TGCTCAAACT 301 TCAGGCTTCG TAGGATAGCG GAAATAGTTT TGATCTGAAA AATCCATTTC TTCCCGCAAA 43102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGGCTTCG TAGGATAGCG GAAATAGTTT TGATCTGAAA AATCCATTTC TTCCCGCAAA 361 TGCAATGGGC TTGGACTGCT GGAGACTGAT TTTTATGTCT CGACAGTCTG ACTAGCATGC 43042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAATGGGC TTGGACTGCT GGAGACTGAT TTTTATGTCT CGACAGTCTG ACTAGCATGC 421 CATTCATCAA GTCCTGTAGA ATTTTGAACA TAGGATACCT AAATTATGAT AGCCTTCTGC 42982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCATCAA GTCCTGTAGA ATTTTGAACA TAGGATACCT AAATTATGAT AGCCTTCTGC 481 CTCAGCTATC ACCAATCCTC TTTGTGAGAA GCTATGCTAA AAACTCTGAA ATAGTCATGA 42922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGCTATC ACCAATCCTC TTTGTGAGAA GCTATGCTAA AAACTCTGAA ATAGTCATGA 541 ATTTTAGTAT GAATATGCTT TTGTAGATGC ACGATTTCAT CTCGCGTCAT AAAATAAACA 42862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAGTAT GAATATGCTT TTGTAGATGC ACGATTTCAT CTCGCGTCAT AAAATAAACA 601 AAACAAATTA CATGTTGCAG CCTT 42838 |||||||||| |||||||||| |||| AAACAAATTA CATGTTGCAG CCTT 625 hqPGS_C04HBa0127E11.1-_SGN-E353373+ (43701 43688,43601 43479,43325 42838) ******************************************************************************** EST sequence 133 +strand 567 n (File: SGN-E240622+) 1 TCACATACAT ATTTTGTTGG AAACGCCCCT ATGGGTCATA TGGTCATACA ACCCACTGAA 61 GACAAGAAAA TTCTGTCAAT CAAGCGCTTC TTCTTCAAAT CCCAAGTCAT TGCAGTCAAC 121 AAATTTGATA TTAGAAAGTG TGATGATTTT GTCTGGGTGA CAAAAGATGA ATTGTTGGAA 181 TACTTTCCTG AGCAAGCTGA ATTCCTGAAC AAGATGATCA TCAGCTGATG TTTGTTTCTG 241 CTCAAACTTC AGGCTTGGTA GGATAGCTAG CGGTTTGAGT ATATCCTGAT CTGAAAAATC 301 CACTTCTTTC CGCAAATGTA ATGGCTTTGA TTACTGGAGA CCAATTTTAT GTACTGGCAG 361 CAAGAAGACC TGACTGCAAT TTGCCAGTGT GCCATTCATC AAGTTTTGTA GAATTTTGAA 421 CATAGGGATA CCTTAAGTTG TGATGGCCTT CTATCTCAGC TATCACCATT CCTATTTGGG 481 AGAAGCTATG CTCAGAACTC TGAACTGGTC ATGCAATTTA GTATGAATAT ACTTGTAGAT 541 GCATGATTTC ATCTCGTGTC ATGAAAT Predicted gene structure (within gDNA segment 44162 to 39434): Exon 1 43562 43479 ( 84 n); cDNA 1 84 ( 84 n); score: 0.940 Intron 1 43478 43326 ( 153 n); Pd: 0.999 (s: 0.92), Pa: 0.992 (s: 0.96) Exon 2 43325 42867 ( 459 n); cDNA 85 567 ( 483 n); score: 0.746 MATCH C04HBa0127E11.1- SGN-E240622+ 0.776 543 0.958 C PGS_C04HBa0127E11.1-_SGN-E240622+ (43562 43479,43325 42867) Alignment (genomic DNA sequence = upper lines): TCACATACAT ATTTTGTTGG AAATGCCCCT ATGGGTCATA TGGTCATGCA ACCCACTGAA 43503 |||||||||| |||||||||| ||| |||||| |||||||||| ||||||| || |||||||||| TCACATACAT ATTTTGTTGG AAACGCCCCT ATGGGTCATA TGGTCATACA ACCCACTGAA 60 GACAAGAAAA TCCCTTCAAT CAAGGTATGT ACATTTTAAT TATTGAAAGT ATTGAAGAAA 43443 |||||||||| | | ||||| |||| GACAAGAAAA TTCTGTCAAT CAAG...... .......... .......... .......... 84 AAGAGAGTAA AGAAATTCTC TCATCCCACG GTGAGTGAGG GACGGAAGGA GGGAAATTTC 43383 .......... .......... .......... .......... .......... .......... 84 CTGATAGCTT CTGCAAATTT TTGTGCTTCT TATATATTCT ATATTTTATT GTGGCAGCGC 43323 ||| .......... .......... .......... .......... .......... .......CGC 87 TTCTTCTTCA AATCCCAAGT TATTGCAGCC AACAAATTTG ATATTAGGAA ATGTGATGAT 43263 |||||||||| |||||||||| ||||||| | |||||||||| ||||||| || ||||||||| TTCTTCTTCA AATCCCAAGT CATTGCAGTC AACAAATTTG ATATTAGAAA GTGTGATGAT 147 TTTGTCTGGG TGACCAAAGA TGAACTGTTG GAATACTTTC CCGAGCAAGC TGAATTCCTG 43203 |||||||||| |||| ||||| |||| ||||| |||||||||| | |||||||| |||||||||| TTTGTCTGGG TGACAAAAGA TGAATTGTTG GAATACTTTC CTGAGCAAGC TGAATTCCTG 207 AACAAGATGA TCATCAGCTG ACGTTAGTTT CTGCTCAAAC TTCAGGCTTC GTAGGATAGC 43143 |||||||||| |||||||||| | ||| |||| |||||||||| ||||||||| |||||||||| AACAAGATGA TCATCAGCTG ATGTTTGTTT CTGCTCAAAC TTCAGGCTTG GTAGGATAGC 267 --G-GAAAT- AGT-T-T--T GATCTGAAAA ATCCATTTCT TCCCGCAAAT GCAATGGGCT 43091 | | | ||| | | | |||||||||| ||||| |||| | |||||||| | ||| |||| TAGCGGTTTG AGTATATCCT GATCTGAAAA ATCCACTTCT TTCCGCAAAT GTAAT-GGCT 326 TGGACTGCTG GAGACTGA-T TT-T-TA-TG TC-TCGA-CA G-TCTGACT- --A---G-CA 43045 | || | ||| ||||| | | || | || || | | | | | |||||| | | || TTGATTACTG GAGACCAATT TTATGTACTG GCAGCAAGAA GACCTGACTG CAATTTGCCA 386 ---TGCCATT CATCAAGTCC TGTAGAATTT TGAACATA-G GATACC-TAA ATTATGATAG 42990 ||||||| |||||||| |||||||||| |||||||| | |||||| ||| || |||| | GTGTGCCATT CATCAAGTTT TGTAGAATTT TGAACATAGG GATACCTTAA GTTGTGATGG 446 CCTTCTGCCT CAGCTATCAC CAATCCTCTT TGTGAGAAGC TATGCTAAAA ACTCTGAAAT 42930 |||||| || |||||||||| || |||| || || ||||||| |||||| | | |||||||| | CCTTCTATCT CAGCTATCAC CATTCCTATT TGGGAGAAGC TATGCTCAGA ACTCTGAACT 506 AGTCATGAAT TTTAGTATGA ATATGCTTTT GTAGATGCAC GATTTCATCT CGCGTCATAA 42870 |||||| | |||||||||| |||| | || ||||||||| |||||||||| || ||||| | GGTCATGCAA TTTAGTATGA ATATAC--TT GTAGATGCAT GATTTCATCT CGTGTCATGA 564 AAT 42867 ||| AAT 567 hqPGS_C04HBa0127E11.1-_SGN-E240622+ (43562 43479,43325 42867) ******************************************************************************** EST sequence 12 -strand 815 n (File: SGN-E540533-) 1 TCAAGAATTT TGTTTCGTTG AGGGCAGCAA TATCGGCGAG AGTATCCAGA AAGTTTTCTG 61 AAGAAGTCTG ATACCAGGGG AAAAGTTGAT TATCAAATTG ATTATAAACC AGCTCCTCGA 121 ATCTCAGAAG CAGATAAGAC TAATGATCAA AGGTCATTAC AGCGAGCACT AGACAAGAGA 181 CTCTATCTTC TAGTCCATGG TACCACACAA GGTAGTGGAA AGCCTGTCTG GCATTTCCCT 241 GAAAAAGTTT ATGAGTCTGA AGAGAATTTG CGCAAGTGTG CTGAGTCTGC CTTAGAATCT 301 TTCATTGGAG ATCTTTCACA TACATATTTT GTTGGAAATG CCCCTATGGG TCATATGGTC 361 ATGCAACCCA CTGAAGACAA GAAAATCCCT TCAATCAAGC GCTTCTTCTT CAAATCCCAA 421 GTTATTGCAG CCAACAAATT TGATATTAGG AAATGTGATG ATTTTGTCTG GGTGACCAAA 481 GATGAACTGT TGGAATACTT TCCCGAGCAA GCTGAATTCC TGAACAAGAT GATCATCAGC 541 TGACGTTAGT TTCTGCTCAA ACTTCAGGCT TCGTAGGATA GCGGAAATAG TTTTGATCTG 601 AAAAATCCAT TTCTTCCCGC AAATGCAATG GGCTTGGACT GCTGGAGACT GATTTTTATG 661 TCTCGACAGT CTGACTAGCA TGCCATTCAT CAAGTCCTGT AGAATTTTGA ACATAGGATA 721 CCTAAATTAT GATAGCCTTC TGCCTCAGCT ATCACCAATC CTCTTTGTGA GAAGCTATGC 781 TAAAAACTCT GAAATAGTCA TGAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 45638 to 42211): Exon 1 45374 45363 ( 12 n); cDNA 1 11 ( 11 n); score: 0.917 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 12 77 ( 66 n); score: 0.970 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 1.00), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 78 152 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 4 43811 43688 ( 124 n); cDNA 153 276 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 43601 43479 ( 123 n); cDNA 277 399 ( 123 n); score: 1.000 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 6 43325 42921 ( 405 n); cDNA 400 804 ( 405 n); score: 1.000 PPA cDNA 805 815 MATCH C04HBa0127E11.1- SGN-E540533- 0.996 805 0.988 C PGS_C04HBa0127E11.1-_SGN-E540533- (45374 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42921) Alignment (genomic DNA sequence = upper lines): TCAAGAATTT TCGTAAGTTT TTTCTTTTTT TCTGTTCAAT TGTTGCACGA AATCGAAGTG 45315 |||||||||| | TCAAGAATTT T-........ .......... .......... .......... .......... 11 TAATCAATCC CTTTTGTAAT CCAATTACAA TGATTTACTT TTAGAGCGAT AATTGCTGGT 45255 .......... .......... .......... .......... .......... .......... 11 TCGTATAATA GAATGATCAA AACATTTACT AGTGTTGATT TTTTTTTTCG CTTTTCAGAA 45195 .......... .......... .......... .......... .......... .......... 11 ACTGTGCTGG TTAATTAGGG ATTAAGGGGT ACTTTGATAT GTTTGCTTGA GAAAAATAGT 45135 .......... .......... .......... .......... .......... .......... 11 GCTAAAAAAC AATAATTTTA TGCCTTAGTC AGGTCAAATT ATGAATCTTC GCTATTTTGT 45075 .......... .......... .......... .......... .......... .......... 11 AAGTTTGATG AAGTAAATCT ACGAAAGAAA ATAGTTTCTT TTGTCCAAAA TTTTGCAGTG 45015 .......... .......... .......... .......... .......... .......... 11 GTTTCTAATG CTTAGGAGAT AATGTGTAAT GAAGTTGAGA ATAATGAGGT TATAGAATGG 44955 .......... .......... .......... .......... .......... .......... 11 GTTAGAAGGA GAAAATGAGA ATAAAAAAGA GCAAAGGTTC ATGAACAAGA GTTGGCGAAT 44895 .......... .......... .......... .......... .......... .......... 11 GACAATGTAG ATGATTGTTT AACGTAATTG GTGTTTAGTT GATTGCAGTA ATTTTATGAT 44835 .......... .......... .......... .......... .......... .......... 11 TAATTTCTTT TATAGGTTTC GTTGGAGGCA GCAATATCGG CGAGAGTATC CAGAAAGTTT 44775 ||||| |||| |||| |||||||||| |||||||||| |||||||||| .......... .....GTTTC GTTGAGGGCA GCAATATCGG CGAGAGTATC CAGAAAGTTT 56 TCTGAAGAAG TCTGATACCA GGTACATTGA TGTTGCATTT TTTGAATTAC ACCTTGCCAT 44715 |||||||||| |||||||||| | TCTGAAGAAG TCTGATACCA G......... .......... .......... .......... 77 TGAATACCTT TCCTTGTGAA TTATGTATCT TCATTTATGA TGAAATATTA ACTAATGAAT 44655 .......... .......... .......... .......... .......... .......... 77 GGTATGAAGA GTGTGCATAG GATGTATGAA ATAAGTTTAA ACATAATAGA CCAGTGAAAT 44595 .......... .......... .......... .......... .......... .......... 77 TGATTTAGGA GCTGAATAGC ACAAAGAGAG CATAAAAGTC GAAAAGTGAT GAAGATTTTC 44535 .......... .......... .......... .......... .......... .......... 77 TGAGCGTTTT TCTTTACTCT AGAAATAGAG TTTGTCTAAA TTGCTTGTGT AGTATTATTG 44475 .......... .......... .......... .......... .......... .......... 77 CCTTTTCAAG CATGTGTTCT TCCTTATTAG CCATTAAATA TGTGCATGGT TCTTCTTGAA 44415 .......... .......... .......... .......... .......... .......... 77 CATGCTATCA CATACTGTTC TGTCTAGTGT CAAATGCCAC ATGGTCAGTG ACTCGGTTAC 44355 .......... .......... .......... .......... .......... .......... 77 ATCTATATGT TACATGCAGG GGAAAAGGTG ATTATCAAAT TGATTATAAA CCAGCTCCTC 44295 | ||||||| || |||||||||| |||||||||| |||||||||| .......... .........G GGAAAAGTTG ATTATCAAAT TGATTATAAA CCAGCTCCTC 118 GAATCTCAGA AGCAGATAAG ACTAATGATC AAAGGTACCA AAGCTTGGAC TTCTAACTTT 44235 |||||||||| |||||||||| |||||||||| |||| GAATCTCAGA AGCAGATAAG ACTAATGATC AAAG...... .......... .......... 152 TGTCAAATAT TATACAAGAA TTTGAATATG GACATTGCAC TAGAAGATAT TTTTCTTTCA 44175 .......... .......... .......... .......... .......... .......... 152 AGAGTTGCTT TACTAAATTC AGCAGACTCG TATTTCCTGA CAATAGATGA TTATTGACTT 44115 .......... .......... .......... .......... .......... .......... 152 CTAATTGTTT ACCATAACTA AATTTTTGAT GTTGAAATGC CTTAATATTG TCTCGAAGTA 44055 .......... .......... .......... .......... .......... .......... 152 ATTGATGTGT TAGTTACATG AGATTTTTCA ATTGCGCATT GTGTAAGTAC TTAAAATTAG 43995 .......... .......... .......... .......... .......... .......... 152 GAATGCAGCG CTACTGTTTT TTTTTTTACC TTTTATTTGC CTTCTTCACC CTCTCTACCC 43935 .......... .......... .......... .......... .......... .......... 152 CACAAAATAA AGCTTGCGTC TTTTTTTTCA ACTCATCACT TGGTCAAAAT TTGCTAAAAG 43875 .......... .......... .......... .......... .......... .......... 152 GTGCTAACCC TACACAAAAC CTTTTCATGT TACTAATTAT GAGATTTTAT TGATATGCAT 43815 .......... .......... .......... .......... .......... .......... 152 AAGGTCATTA CAGCGAGCAC TAGACAAGAG ACTCTATCTT CTAGTCCATG GTACCACACA 43755 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTCATTA CAGCGAGCAC TAGACAAGAG ACTCTATCTT CTAGTCCATG GTACCACACA 209 AGGTAGTGGA AAGCCTGTCT GGCATTTCCC TGAAAAAGTT TATGAGTCTG AAGAGAATTT 43695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTAGTGGA AAGCCTGTCT GGCATTTCCC TGAAAAAGTT TATGAGTCTG AAGAGAATTT 269 GCGCAAGGTA AATAGTACTT ATCAGTCCAT TTCTATGCTG ATTTCAGTAA TTTGGGTTAG 43635 ||||||| GCGCAAG... .......... .......... .......... .......... .......... 276 GAAAATGAAA ATATAAGTTG CAACTATTTG CAGTGTGCTG AGTCTGCCTT AGAATCTTTC 43575 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TGTGCTG AGTCTGCCTT AGAATCTTTC 303 ATTGGAGATC TTTCACATAC ATATTTTGTT GGAAATGCCC CTATGGGTCA TATGGTCATG 43515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGAGATC TTTCACATAC ATATTTTGTT GGAAATGCCC CTATGGGTCA TATGGTCATG 363 CAACCCACTG AAGACAAGAA AATCCCTTCA ATCAAGGTAT GTACATTTTA ATTATTGAAA 43455 |||||||||| |||||||||| |||||||||| |||||| CAACCCACTG AAGACAAGAA AATCCCTTCA ATCAAG.... .......... .......... 399 GTATTGAAGA AAAAGAGAGT AAAGAAATTC TCTCATCCCA CGGTGAGTGA GGGACGGAAG 43395 .......... .......... .......... .......... .......... .......... 399 GAGGGAAATT TCCTGATAGC TTCTGCAAAT TTTTGTGCTT CTTATATATT CTATATTTTA 43335 .......... .......... .......... .......... .......... .......... 399 TTGTGGCAGC GCTTCTTCTT CAAATCCCAA GTTATTGCAG CCAACAAATT TGATATTAGG 43275 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C GCTTCTTCTT CAAATCCCAA GTTATTGCAG CCAACAAATT TGATATTAGG 450 AAATGTGATG ATTTTGTCTG GGTGACCAAA GATGAACTGT TGGAATACTT TCCCGAGCAA 43215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGTGATG ATTTTGTCTG GGTGACCAAA GATGAACTGT TGGAATACTT TCCCGAGCAA 510 GCTGAATTCC TGAACAAGAT GATCATCAGC TGACGTTAGT TTCTGCTCAA ACTTCAGGCT 43155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAATTCC TGAACAAGAT GATCATCAGC TGACGTTAGT TTCTGCTCAA ACTTCAGGCT 570 TCGTAGGATA GCGGAAATAG TTTTGATCTG AAAAATCCAT TTCTTCCCGC AAATGCAATG 43095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTAGGATA GCGGAAATAG TTTTGATCTG AAAAATCCAT TTCTTCCCGC AAATGCAATG 630 GGCTTGGACT GCTGGAGACT GATTTTTATG TCTCGACAGT CTGACTAGCA TGCCATTCAT 43035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTGGACT GCTGGAGACT GATTTTTATG TCTCGACAGT CTGACTAGCA TGCCATTCAT 690 CAAGTCCTGT AGAATTTTGA ACATAGGATA CCTAAATTAT GATAGCCTTC TGCCTCAGCT 42975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTCCTGT AGAATTTTGA ACATAGGATA CCTAAATTAT GATAGCCTTC TGCCTCAGCT 750 ATCACCAATC CTCTTTGTGA GAAGCTATGC TAAAAACTCT GAAATAGTCA TGAA 42921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATCACCAATC CTCTTTGTGA GAAGCTATGC TAAAAACTCT GAAATAGTCA TGAA 804 hqPGS_C04HBa0127E11.1-_SGN-E540533- (44819 44754,44335 44261,43811 43688,43601 43479,43325 42921) ******************************************************************************** EST sequence 76 +strand 777 n (File: SGN-E540536+) 1 TTTAGGGTTT ATGAAAATGC AGAGGTGCTG TTCATCTGCG ATAGGTAAAC GATGGTTTTC 61 TTCATTCAAC AATGATAAAA TTGTGGCTTC AGTGCTCTTT GAAAGATTAC CGGTAGTGGT 121 ACCCAAAATC GATCCTACTG TATATGCTTT TCAAGAATTT TCGTTTCGTT GGAGGCAGCA 181 ATATCGGCGA GAGTATCCAG AAAGTTTTCT GAAGAAGTCT GATACCAGGG GAAAAGGTGA 241 TTATCAAATT GATTATAAAC CAGCTCCTCG AATCTCAGAA GCAGATAAGA CTAATGATCA 301 AAGGTCATTA CAGCGAGCAC TAGACAAGAG ACTCTATCTT CTAGTCCATG GTACCACACA 361 AGGTAGTGGA AAGCCTGTCT GGCATTTCCC TGAAAAAGTT TATGAGTCTG AAGAGAATTT 421 GCGCAAGTGT GCTGAGTCTG CCTTAGAATC TTTCATTGGA GATCTTTCAC ATACATATTT 481 TGTTGGAAAT GCCCCTATGG GTCATATGGT CATGCAACCC ACTGAAGACA AGAAAATCCC 541 TTCAATCAAG CGCTTCTTCT TCAAATCCCA AGTTATTGCA GCCAACAAAT TTGATATTAG 601 GAAATGTGAT GATTTTGTCT GGGTGACCAA AGATGAACTG TTGGAATACT TTCCCGAGCA 661 AGCTGAATTC CTGAACAAGA TGATCATCAG CTGACGTTAG TTTCTGCTCA ACTTCAGGCT 721 TCGTAGGATA GCGGAAATAG TTTTGATCTG AAAAATCCAT TTCTTCCCGC AAATGCA Predicted gene structure (within gDNA segment 46124 to 42488): Exon 1 45524 45363 ( 162 n); cDNA 1 162 ( 162 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 44819 44754 ( 66 n); cDNA 163 228 ( 66 n); score: 1.000 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 44335 44261 ( 75 n); cDNA 229 303 ( 75 n); score: 1.000 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 4 43811 43688 ( 124 n); cDNA 304 427 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 43601 43479 ( 123 n); cDNA 428 550 ( 123 n); score: 1.000 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 6 43325 43098 ( 228 n); cDNA 551 777 ( 227 n); score: 0.996 MATCH C04HBa0127E11.1- SGN-E540536+ 0.999 778 1.001 C PGS_C04HBa0127E11.1-_SGN-E540536+ (45524 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43098) Alignment (genomic DNA sequence = upper lines): TTTAGGGTTT ATGAAAATGC AGAGGTGCTG TTCATCTGCG ATAGGTAAAC GATGGTTTTC 45465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGGGTTT ATGAAAATGC AGAGGTGCTG TTCATCTGCG ATAGGTAAAC GATGGTTTTC 60 TTCATTCAAC AATGATAAAA TTGTGGCTTC AGTGCTCTTT GAAAGATTAC CGGTAGTGGT 45405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTCAAC AATGATAAAA TTGTGGCTTC AGTGCTCTTT GAAAGATTAC CGGTAGTGGT 120 ACCCAAAATC GATCCTACTG TATATGCTTT TCAAGAATTT TCGTAAGTTT TTTCTTTTTT 45345 |||||||||| |||||||||| |||||||||| |||||||||| || ACCCAAAATC GATCCTACTG TATATGCTTT TCAAGAATTT TC........ .......... 162 TCTGTTCAAT TGTTGCACGA AATCGAAGTG TAATCAATCC CTTTTGTAAT CCAATTACAA 45285 .......... .......... .......... .......... .......... .......... 162 TGATTTACTT TTAGAGCGAT AATTGCTGGT TCGTATAATA GAATGATCAA AACATTTACT 45225 .......... .......... .......... .......... .......... .......... 162 AGTGTTGATT TTTTTTTTCG CTTTTCAGAA ACTGTGCTGG TTAATTAGGG ATTAAGGGGT 45165 .......... .......... .......... .......... .......... .......... 162 ACTTTGATAT GTTTGCTTGA GAAAAATAGT GCTAAAAAAC AATAATTTTA TGCCTTAGTC 45105 .......... .......... .......... .......... .......... .......... 162 AGGTCAAATT ATGAATCTTC GCTATTTTGT AAGTTTGATG AAGTAAATCT ACGAAAGAAA 45045 .......... .......... .......... .......... .......... .......... 162 ATAGTTTCTT TTGTCCAAAA TTTTGCAGTG GTTTCTAATG CTTAGGAGAT AATGTGTAAT 44985 .......... .......... .......... .......... .......... .......... 162 GAAGTTGAGA ATAATGAGGT TATAGAATGG GTTAGAAGGA GAAAATGAGA ATAAAAAAGA 44925 .......... .......... .......... .......... .......... .......... 162 GCAAAGGTTC ATGAACAAGA GTTGGCGAAT GACAATGTAG ATGATTGTTT AACGTAATTG 44865 .......... .......... .......... .......... .......... .......... 162 GTGTTTAGTT GATTGCAGTA ATTTTATGAT TAATTTCTTT TATAGGTTTC GTTGGAGGCA 44805 ||||| |||||||||| .......... .......... .......... .......... .....GTTTC GTTGGAGGCA 177 GCAATATCGG CGAGAGTATC CAGAAAGTTT TCTGAAGAAG TCTGATACCA GGTACATTGA 44745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GCAATATCGG CGAGAGTATC CAGAAAGTTT TCTGAAGAAG TCTGATACCA G......... 228 TGTTGCATTT TTTGAATTAC ACCTTGCCAT TGAATACCTT TCCTTGTGAA TTATGTATCT 44685 .......... .......... .......... .......... .......... .......... 228 TCATTTATGA TGAAATATTA ACTAATGAAT GGTATGAAGA GTGTGCATAG GATGTATGAA 44625 .......... .......... .......... .......... .......... .......... 228 ATAAGTTTAA ACATAATAGA CCAGTGAAAT TGATTTAGGA GCTGAATAGC ACAAAGAGAG 44565 .......... .......... .......... .......... .......... .......... 228 CATAAAAGTC GAAAAGTGAT GAAGATTTTC TGAGCGTTTT TCTTTACTCT AGAAATAGAG 44505 .......... .......... .......... .......... .......... .......... 228 TTTGTCTAAA TTGCTTGTGT AGTATTATTG CCTTTTCAAG CATGTGTTCT TCCTTATTAG 44445 .......... .......... .......... .......... .......... .......... 228 CCATTAAATA TGTGCATGGT TCTTCTTGAA CATGCTATCA CATACTGTTC TGTCTAGTGT 44385 .......... .......... .......... .......... .......... .......... 228 CAAATGCCAC ATGGTCAGTG ACTCGGTTAC ATCTATATGT TACATGCAGG GGAAAAGGTG 44325 | |||||||||| .......... .......... .......... .......... .........G GGAAAAGGTG 239 ATTATCAAAT TGATTATAAA CCAGCTCCTC GAATCTCAGA AGCAGATAAG ACTAATGATC 44265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATCAAAT TGATTATAAA CCAGCTCCTC GAATCTCAGA AGCAGATAAG ACTAATGATC 299 AAAGGTACCA AAGCTTGGAC TTCTAACTTT TGTCAAATAT TATACAAGAA TTTGAATATG 44205 |||| AAAG...... .......... .......... .......... .......... .......... 303 GACATTGCAC TAGAAGATAT TTTTCTTTCA AGAGTTGCTT TACTAAATTC AGCAGACTCG 44145 .......... .......... .......... .......... .......... .......... 303 TATTTCCTGA CAATAGATGA TTATTGACTT CTAATTGTTT ACCATAACTA AATTTTTGAT 44085 .......... .......... .......... .......... .......... .......... 303 GTTGAAATGC CTTAATATTG TCTCGAAGTA ATTGATGTGT TAGTTACATG AGATTTTTCA 44025 .......... .......... .......... .......... .......... .......... 303 ATTGCGCATT GTGTAAGTAC TTAAAATTAG GAATGCAGCG CTACTGTTTT TTTTTTTACC 43965 .......... .......... .......... .......... .......... .......... 303 TTTTATTTGC CTTCTTCACC CTCTCTACCC CACAAAATAA AGCTTGCGTC TTTTTTTTCA 43905 .......... .......... .......... .......... .......... .......... 303 ACTCATCACT TGGTCAAAAT TTGCTAAAAG GTGCTAACCC TACACAAAAC CTTTTCATGT 43845 .......... .......... .......... .......... .......... .......... 303 TACTAATTAT GAGATTTTAT TGATATGCAT AAGGTCATTA CAGCGAGCAC TAGACAAGAG 43785 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTCATTA CAGCGAGCAC TAGACAAGAG 330 ACTCTATCTT CTAGTCCATG GTACCACACA AGGTAGTGGA AAGCCTGTCT GGCATTTCCC 43725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTATCTT CTAGTCCATG GTACCACACA AGGTAGTGGA AAGCCTGTCT GGCATTTCCC 390 TGAAAAAGTT TATGAGTCTG AAGAGAATTT GCGCAAGGTA AATAGTACTT ATCAGTCCAT 43665 |||||||||| |||||||||| |||||||||| ||||||| TGAAAAAGTT TATGAGTCTG AAGAGAATTT GCGCAAG... .......... .......... 427 TTCTATGCTG ATTTCAGTAA TTTGGGTTAG GAAAATGAAA ATATAAGTTG CAACTATTTG 43605 .......... .......... .......... .......... .......... .......... 427 CAGTGTGCTG AGTCTGCCTT AGAATCTTTC ATTGGAGATC TTTCACATAC ATATTTTGTT 43545 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TGTGCTG AGTCTGCCTT AGAATCTTTC ATTGGAGATC TTTCACATAC ATATTTTGTT 484 GGAAATGCCC CTATGGGTCA TATGGTCATG CAACCCACTG AAGACAAGAA AATCCCTTCA 43485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAATGCCC CTATGGGTCA TATGGTCATG CAACCCACTG AAGACAAGAA AATCCCTTCA 544 ATCAAGGTAT GTACATTTTA ATTATTGAAA GTATTGAAGA AAAAGAGAGT AAAGAAATTC 43425 |||||| ATCAAG.... .......... .......... .......... .......... .......... 550 TCTCATCCCA CGGTGAGTGA GGGACGGAAG GAGGGAAATT TCCTGATAGC TTCTGCAAAT 43365 .......... .......... .......... .......... .......... .......... 550 TTTTGTGCTT CTTATATATT CTATATTTTA TTGTGGCAGC GCTTCTTCTT CAAATCCCAA 43305 | |||||||||| |||||||||| .......... .......... .......... .........C GCTTCTTCTT CAAATCCCAA 571 GTTATTGCAG CCAACAAATT TGATATTAGG AAATGTGATG ATTTTGTCTG GGTGACCAAA 43245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATTGCAG CCAACAAATT TGATATTAGG AAATGTGATG ATTTTGTCTG GGTGACCAAA 631 GATGAACTGT TGGAATACTT TCCCGAGCAA GCTGAATTCC TGAACAAGAT GATCATCAGC 43185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAACTGT TGGAATACTT TCCCGAGCAA GCTGAATTCC TGAACAAGAT GATCATCAGC 691 TGACGTTAGT TTCTGCTCAA ACTTCAGGCT TCGTAGGATA GCGGAAATAG TTTTGATCTG 43125 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TGACGTTAGT TTCTGCTC-A ACTTCAGGCT TCGTAGGATA GCGGAAATAG TTTTGATCTG 750 AAAAATCCAT TTCTTCCCGC AAATGCA 43098 |||||||||| |||||||||| ||||||| AAAAATCCAT TTCTTCCCGC AAATGCA 777 hqPGS_C04HBa0127E11.1-_SGN-E540536+ (45524 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43098) ******************************************************************************** EST sequence 146 +strand 677 n (File: SGN-E369658+) 1 AAATTGTGGC TTCAGTGCTC TTTGAAAGAT TACCGGTAGT GGTACCCAAA ATCGATCCTA 61 CTGTATATGC TTTTCAAGAA TTTTCGTTTC GTTGGAGGCA GCAATATCGG CGAGAGTATC 121 CAGAAAGTTT TCTGAAGAAG TCTGATACCA GGGGAAAAGG TGATTATCAA ATTGATTATA 181 AACCAGCTCC TCGAATCTCA GAAGCAGATA AGACTAATGA TCAAAGGTCA TTACAGCGAG 241 CACTAGACAA GAGACTCTAT CTTCTAGTCC ATGGTACCAC ACAAGGTAGT GGAAAGCCTG 301 TCTGGCATTT CCCTGAAAAA GTTTATGAGT CTGAAGAGAA TTTGCGCAAG TGTGCTGAGT 361 CTGCCTTAGA ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA AATGCCCCTA 421 TGGGTCATAT GGTCATGCAA CCCACTGAAG ACAAGAAAAT CCCTTCAATC AAGCGCTTCT 481 TCTTCAAATC CCAAGTTATT GCAGCCAACA AATTTGATAT TAGGAAATGT GATGATTTTG 541 TCTGGGTGAC CAAAGATGAA CTGTTGGAAT ACTTTCCCGA GCAAGCTGAA TTCCTGAACA 601 AGATGATCAT CAGCTGACGT TAGTTTCTGC TCAAACTTCA GGCTTCGTAG GATAGCGGAA 661 ATAGTTTTGA TCTGAAA Predicted gene structure (within gDNA segment 46047 to 42512): Exon 1 45447 45363 ( 85 n); cDNA 1 85 ( 85 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 44819 44754 ( 66 n); cDNA 86 151 ( 66 n); score: 1.000 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 44335 44261 ( 75 n); cDNA 152 226 ( 75 n); score: 1.000 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 4 43811 43688 ( 124 n); cDNA 227 350 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 43601 43479 ( 123 n); cDNA 351 473 ( 123 n); score: 1.000 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 6 43325 43122 ( 204 n); cDNA 474 677 ( 204 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E369658+ 1.000 677 1.000 C PGS_C04HBa0127E11.1-_SGN-E369658+ (45447 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43122) Alignment (genomic DNA sequence = upper lines): AAATTGTGGC TTCAGTGCTC TTTGAAAGAT TACCGGTAGT GGTACCCAAA ATCGATCCTA 45388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGTGGC TTCAGTGCTC TTTGAAAGAT TACCGGTAGT GGTACCCAAA ATCGATCCTA 60 CTGTATATGC TTTTCAAGAA TTTTCGTAAG TTTTTTCTTT TTTTCTGTTC AATTGTTGCA 45328 |||||||||| |||||||||| ||||| CTGTATATGC TTTTCAAGAA TTTTC..... .......... .......... .......... 85 CGAAATCGAA GTGTAATCAA TCCCTTTTGT AATCCAATTA CAATGATTTA CTTTTAGAGC 45268 .......... .......... .......... .......... .......... .......... 85 GATAATTGCT GGTTCGTATA ATAGAATGAT CAAAACATTT ACTAGTGTTG ATTTTTTTTT 45208 .......... .......... .......... .......... .......... .......... 85 TCGCTTTTCA GAAACTGTGC TGGTTAATTA GGGATTAAGG GGTACTTTGA TATGTTTGCT 45148 .......... .......... .......... .......... .......... .......... 85 TGAGAAAAAT AGTGCTAAAA AACAATAATT TTATGCCTTA GTCAGGTCAA ATTATGAATC 45088 .......... .......... .......... .......... .......... .......... 85 TTCGCTATTT TGTAAGTTTG ATGAAGTAAA TCTACGAAAG AAAATAGTTT CTTTTGTCCA 45028 .......... .......... .......... .......... .......... .......... 85 AAATTTTGCA GTGGTTTCTA ATGCTTAGGA GATAATGTGT AATGAAGTTG AGAATAATGA 44968 .......... .......... .......... .......... .......... .......... 85 GGTTATAGAA TGGGTTAGAA GGAGAAAATG AGAATAAAAA AGAGCAAAGG TTCATGAACA 44908 .......... .......... .......... .......... .......... .......... 85 AGAGTTGGCG AATGACAATG TAGATGATTG TTTAACGTAA TTGGTGTTTA GTTGATTGCA 44848 .......... .......... .......... .......... .......... .......... 85 GTAATTTTAT GATTAATTTC TTTTATAGGT TTCGTTGGAG GCAGCAATAT CGGCGAGAGT 44788 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT TTCGTTGGAG GCAGCAATAT CGGCGAGAGT 117 ATCCAGAAAG TTTTCTGAAG AAGTCTGATA CCAGGTACAT TGATGTTGCA TTTTTTGAAT 44728 |||||||||| |||||||||| |||||||||| |||| ATCCAGAAAG TTTTCTGAAG AAGTCTGATA CCAG...... .......... .......... 151 TACACCTTGC CATTGAATAC CTTTCCTTGT GAATTATGTA TCTTCATTTA TGATGAAATA 44668 .......... .......... .......... .......... .......... .......... 151 TTAACTAATG AATGGTATGA AGAGTGTGCA TAGGATGTAT GAAATAAGTT TAAACATAAT 44608 .......... .......... .......... .......... .......... .......... 151 AGACCAGTGA AATTGATTTA GGAGCTGAAT AGCACAAAGA GAGCATAAAA GTCGAAAAGT 44548 .......... .......... .......... .......... .......... .......... 151 GATGAAGATT TTCTGAGCGT TTTTCTTTAC TCTAGAAATA GAGTTTGTCT AAATTGCTTG 44488 .......... .......... .......... .......... .......... .......... 151 TGTAGTATTA TTGCCTTTTC AAGCATGTGT TCTTCCTTAT TAGCCATTAA ATATGTGCAT 44428 .......... .......... .......... .......... .......... .......... 151 GGTTCTTCTT GAACATGCTA TCACATACTG TTCTGTCTAG TGTCAAATGC CACATGGTCA 44368 .......... .......... .......... .......... .......... .......... 151 GTGACTCGGT TACATCTATA TGTTACATGC AGGGGAAAAG GTGATTATCA AATTGATTAT 44308 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GGGAAAAG GTGATTATCA AATTGATTAT 179 AAACCAGCTC CTCGAATCTC AGAAGCAGAT AAGACTAATG ATCAAAGGTA CCAAAGCTTG 44248 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAACCAGCTC CTCGAATCTC AGAAGCAGAT AAGACTAATG ATCAAAG... .......... 226 GACTTCTAAC TTTTGTCAAA TATTATACAA GAATTTGAAT ATGGACATTG CACTAGAAGA 44188 .......... .......... .......... .......... .......... .......... 226 TATTTTTCTT TCAAGAGTTG CTTTACTAAA TTCAGCAGAC TCGTATTTCC TGACAATAGA 44128 .......... .......... .......... .......... .......... .......... 226 TGATTATTGA CTTCTAATTG TTTACCATAA CTAAATTTTT GATGTTGAAA TGCCTTAATA 44068 .......... .......... .......... .......... .......... .......... 226 TTGTCTCGAA GTAATTGATG TGTTAGTTAC ATGAGATTTT TCAATTGCGC ATTGTGTAAG 44008 .......... .......... .......... .......... .......... .......... 226 TACTTAAAAT TAGGAATGCA GCGCTACTGT TTTTTTTTTT ACCTTTTATT TGCCTTCTTC 43948 .......... .......... .......... .......... .......... .......... 226 ACCCTCTCTA CCCCACAAAA TAAAGCTTGC GTCTTTTTTT TCAACTCATC ACTTGGTCAA 43888 .......... .......... .......... .......... .......... .......... 226 AATTTGCTAA AAGGTGCTAA CCCTACACAA AACCTTTTCA TGTTACTAAT TATGAGATTT 43828 .......... .......... .......... .......... .......... .......... 226 TATTGATATG CATAAGGTCA TTACAGCGAG CACTAGACAA GAGACTCTAT CTTCTAGTCC 43768 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTCA TTACAGCGAG CACTAGACAA GAGACTCTAT CTTCTAGTCC 270 ATGGTACCAC ACAAGGTAGT GGAAAGCCTG TCTGGCATTT CCCTGAAAAA GTTTATGAGT 43708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTACCAC ACAAGGTAGT GGAAAGCCTG TCTGGCATTT CCCTGAAAAA GTTTATGAGT 330 CTGAAGAGAA TTTGCGCAAG GTAAATAGTA CTTATCAGTC CATTTCTATG CTGATTTCAG 43648 |||||||||| |||||||||| CTGAAGAGAA TTTGCGCAAG .......... .......... .......... .......... 350 TAATTTGGGT TAGGAAAATG AAAATATAAG TTGCAACTAT TTGCAGTGTG CTGAGTCTGC 43588 |||| |||||||||| .......... .......... .......... .......... ......TGTG CTGAGTCTGC 364 CTTAGAATCT TTCATTGGAG ATCTTTCACA TACATATTTT GTTGGAAATG CCCCTATGGG 43528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGAATCT TTCATTGGAG ATCTTTCACA TACATATTTT GTTGGAAATG CCCCTATGGG 424 TCATATGGTC ATGCAACCCA CTGAAGACAA GAAAATCCCT TCAATCAAGG TATGTACATT 43468 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCATATGGTC ATGCAACCCA CTGAAGACAA GAAAATCCCT TCAATCAAG. .......... 473 TTAATTATTG AAAGTATTGA AGAAAAAGAG AGTAAAGAAA TTCTCTCATC CCACGGTGAG 43408 .......... .......... .......... .......... .......... .......... 473 TGAGGGACGG AAGGAGGGAA ATTTCCTGAT AGCTTCTGCA AATTTTTGTG CTTCTTATAT 43348 .......... .......... .......... .......... .......... .......... 473 ATTCTATATT TTATTGTGGC AGCGCTTCTT CTTCAAATCC CAAGTTATTG CAGCCAACAA 43288 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..CGCTTCTT CTTCAAATCC CAAGTTATTG CAGCCAACAA 511 ATTTGATATT AGGAAATGTG ATGATTTTGT CTGGGTGACC AAAGATGAAC TGTTGGAATA 43228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGATATT AGGAAATGTG ATGATTTTGT CTGGGTGACC AAAGATGAAC TGTTGGAATA 571 CTTTCCCGAG CAAGCTGAAT TCCTGAACAA GATGATCATC AGCTGACGTT AGTTTCTGCT 43168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCCCGAG CAAGCTGAAT TCCTGAACAA GATGATCATC AGCTGACGTT AGTTTCTGCT 631 CAAACTTCAG GCTTCGTAGG ATAGCGGAAA TAGTTTTGAT CTGAAA 43122 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CAAACTTCAG GCTTCGTAGG ATAGCGGAAA TAGTTTTGAT CTGAAA 677 hqPGS_C04HBa0127E11.1-_SGN-E369658+ (45447 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43122) ******************************************************************************** EST sequence 64 +strand 712 n (File: SGN-E213384+) 1 AAATGCAGAG GTGCTGTTCG TCTGCTGGTC GATCTGTGAC ATCTAAACGA TGGTTTTCTT 61 CATCAAGCAC TGATAAAATT GTTGCTTCAG TGCTCTTCGA GAGATTACCA GTTATAGTTC 121 CCAAAATCGA TCCTACTGTA TATGCTTTTC AAGAATTTTC GTTTCGTTGG AGGCAGCAGT 181 ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA TACTAGGGGA AAAGGTGATT 241 ATCAAATTGA TTATAAACCA GCTCCGCGAA TCTCAGAAGC AGATAAGACT AATGATCAAA 301 GGTCATTACA GCGAGCACTA GACAGGAGAC TCTATCTTCT AGTCCATGGT ACCACACATG 361 GTAGTGGAAA GCCCGTCTGG CATTTTCCTG AAAAAGTTTA TGAGTCTGAA GAGAACTTGC 421 GCAAGTGTGC TGAGTCTGCC CTAGAATCTT TCATTGGAGA TCTTTCACAT ACATATTTTG 481 TTGGAAACGC CCCTATGGGT CATATGGTCA TACAACCCAC TGAAGACAAG AAAATTCTGT 541 CAATCAAGCG CTTCTTCTTC AAATCCCAAG TCATTGCAGT CAACAAATTT GATATTAGAA 601 AGTGTGATGA TTTTGTCTGG GTGACAAAGA TGAATTGTTG GAATACTTTC CTGAGCAAGC 661 TGAATTCCTG AACAAGATGA TCATCAGCTG ATGTTTGTTT CTGCTCAAAC TT Predicted gene structure (within gDNA segment 47193 to 42551): Exon 1 45479 45363 ( 117 n); cDNA 44 160 ( 117 n); score: 0.897 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 161 226 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 227 301 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 302 425 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43479 ( 123 n); cDNA 426 548 ( 123 n); score: 0.951 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.92), Pa: 0.992 (s: 0.96) Exon 6 43325 43161 ( 165 n); cDNA 549 712 ( 164 n); score: 0.945 MATCH C04HBa0127E11.1- SGN-E213384+ 0.945 670 0.941 C PGS_C04HBa0127E11.1-_SGN-E213384+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43161) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| || || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCGAGAG 103 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 160 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 160 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 160 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 160 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 160 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 160 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 160 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 160 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 160 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 160 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 220 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 226 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 226 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 226 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 226 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 226 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 226 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 226 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG 282 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 301 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 301 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 301 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 301 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 301 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 301 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 301 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 313 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGT CCATGGTACC ACACATGGTA GTGGAAAGCC 373 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| || ||||||| || CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG AACTTGCGCA AG........ 425 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 425 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT GCCTTAGAAT CTTTCATTGG AGATCTTTCA 43560 || |||||||||| ||| |||||| |||||||||| |||||||||| .......... ........TG TGCTGAGTCT GCCCTAGAAT CTTTCATTGG AGATCTTTCA 467 CATACATATT TTGTTGGAAA TGCCCCTATG GGTCATATGG TCATGCAACC CACTGAAGAC 43500 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| CATACATATT TTGTTGGAAA CGCCCCTATG GGTCATATGG TCATACAACC CACTGAAGAC 527 AAGAAAATCC CTTCAATCAA GGTATGTACA TTTTAATTAT TGAAAGTATT GAAGAAAAAG 43440 |||||||| | |||||||| | AAGAAAATTC TGTCAATCAA G......... .......... .......... .......... 548 AGAGTAAAGA AATTCTCTCA TCCCACGGTG AGTGAGGGAC GGAAGGAGGG AAATTTCCTG 43380 .......... .......... .......... .......... .......... .......... 548 ATAGCTTCTG CAAATTTTTG TGCTTCTTAT ATATTCTATA TTTTATTGTG GCAGCGCTTC 43320 |||||| .......... .......... .......... .......... .......... ....CGCTTC 554 TTCTTCAAAT CCCAAGTTAT TGCAGCCAAC AAATTTGATA TTAGGAAATG TGATGATTTT 43260 |||||||||| ||||||| || ||||| |||| |||||||||| |||| || || |||||||||| TTCTTCAAAT CCCAAGTCAT TGCAGTCAAC AAATTTGATA TTAGAAAGTG TGATGATTTT 614 GTCTGGGTGA CCAAAGATGA ACTGTTGGAA TACTTTCCCG AGCAAGCTGA ATTCCTGAAC 43200 |||||||||| ||||||||| | |||||||| |||||||| | |||||||||| |||||||||| GTCTGGGTGA -CAAAGATGA ATTGTTGGAA TACTTTCCTG AGCAAGCTGA ATTCCTGAAC 673 AAGATGATCA TCAGCTGACG TTAGTTTCTG CTCAAACTT 43161 |||||||||| |||||||| | || ||||||| ||||||||| AAGATGATCA TCAGCTGATG TTTGTTTCTG CTCAAACTT 712 hqPGS_C04HBa0127E11.1-_SGN-E213384+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43161) ******************************************************************************** EST sequence 90 +strand 556 n (File: SGN-E267684+) 1 CAAAATCGAT CCTACTGTAT GTGCTTTTCA AGAATTTTCG TTTCGTTGGA GGCAGCAGTA 61 TCGACGAGAG TATCCAGAAA GTTTTCTGAA GAAGTCGGAT ACTAGGGGAA AAGGTGATTA 121 TCAAATTGAT TATAAACCAG CTCCGCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG 181 GTCATTACAG CGAGCACTAG ACAGGAGACT CTATCTTCTA GTCCATGGTA CCACACATGG 241 TAGTGGAAAG CCCGTCTGGC ATTTTCCTGA AAAAGTTTAT GAGTCTGAAG AGAACTTGCG 301 CAAGTGTGCT GAGTCTGCCC TAGAATCTTT CATTGGAGAT CTTTCACATA CATATTTTGT 361 TGGAAACGCC CCTATGGGTC ATATGGTCAT ACAACCCACT GAAGACAAGA AAATTCTGTC 421 AATCAAGCGC TTCTTCTTCA AATCCCAAGT CATTGCAGTC AACAAATTTG ATATTAGAAA 481 GTGTGATGAT TTTGTCTGGG TGACAAAAGA TGAATTGTTG GAATACTTTT CCTGAGCAAG 541 CTGAATTCCT GAACAA Predicted gene structure (within gDNA segment 46001 to 41876): Exon 1 45401 45363 ( 39 n); cDNA 1 39 ( 39 n); score: 0.974 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 40 105 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 106 180 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 181 304 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43479 ( 123 n); cDNA 305 427 ( 123 n); score: 0.951 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.92), Pa: 0.992 (s: 0.96) Exon 6 43325 43198 ( 128 n); cDNA 428 556 ( 129 n); score: 0.926 MATCH C04HBa0127E11.1- SGN-E267684+ 0.951 555 0.998 C PGS_C04HBa0127E11.1-_SGN-E267684+ (45401 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43198) Alignment (genomic DNA sequence = upper lines): CAAAATCGAT CCTACTGTAT ATGCTTTTCA AGAATTTTCG TAAGTTTTTT CTTTTTTTCT 45342 |||||||||| |||||||||| ||||||||| ||||||||| CAAAATCGAT CCTACTGTAT GTGCTTTTCA AGAATTTTC. .......... .......... 39 GTTCAATTGT TGCACGAAAT CGAAGTGTAA TCAATCCCTT TTGTAATCCA ATTACAATGA 45282 .......... .......... .......... .......... .......... .......... 39 TTTACTTTTA GAGCGATAAT TGCTGGTTCG TATAATAGAA TGATCAAAAC ATTTACTAGT 45222 .......... .......... .......... .......... .......... .......... 39 GTTGATTTTT TTTTTCGCTT TTCAGAAACT GTGCTGGTTA ATTAGGGATT AAGGGGTACT 45162 .......... .......... .......... .......... .......... .......... 39 TTGATATGTT TGCTTGAGAA AAATAGTGCT AAAAAACAAT AATTTTATGC CTTAGTCAGG 45102 .......... .......... .......... .......... .......... .......... 39 TCAAATTATG AATCTTCGCT ATTTTGTAAG TTTGATGAAG TAAATCTACG AAAGAAAATA 45042 .......... .......... .......... .......... .......... .......... 39 GTTTCTTTTG TCCAAAATTT TGCAGTGGTT TCTAATGCTT AGGAGATAAT GTGTAATGAA 44982 .......... .......... .......... .......... .......... .......... 39 GTTGAGAATA ATGAGGTTAT AGAATGGGTT AGAAGGAGAA AATGAGAATA AAAAAGAGCA 44922 .......... .......... .......... .......... .......... .......... 39 AAGGTTCATG AACAAGAGTT GGCGAATGAC AATGTAGATG ATTGTTTAAC GTAATTGGTG 44862 .......... .......... .......... .......... .......... .......... 39 TTTAGTTGAT TGCAGTAATT TTATGATTAA TTTCTTTTAT AGGTTTCGTT GGAGGCAGCA 44802 |||||||| |||||||||| .......... .......... .......... .......... ..GTTTCGTT GGAGGCAGCA 57 ATATCGGCGA GAGTATCCAG AAAGTTTTCT GAAGAAGTCT GATACCAGGT ACATTGATGT 44742 ||||| ||| |||||||||| |||||||||| ||||||||| ||||| || GTATCGACGA GAGTATCCAG AAAGTTTTCT GAAGAAGTCG GATACTAG.. .......... 105 TGCATTTTTT GAATTACACC TTGCCATTGA ATACCTTTCC TTGTGAATTA TGTATCTTCA 44682 .......... .......... .......... .......... .......... .......... 105 TTTATGATGA AATATTAACT AATGAATGGT ATGAAGAGTG TGCATAGGAT GTATGAAATA 44622 .......... .......... .......... .......... .......... .......... 105 AGTTTAAACA TAATAGACCA GTGAAATTGA TTTAGGAGCT GAATAGCACA AAGAGAGCAT 44562 .......... .......... .......... .......... .......... .......... 105 AAAAGTCGAA AAGTGATGAA GATTTTCTGA GCGTTTTTCT TTACTCTAGA AATAGAGTTT 44502 .......... .......... .......... .......... .......... .......... 105 GTCTAAATTG CTTGTGTAGT ATTATTGCCT TTTCAAGCAT GTGTTCTTCC TTATTAGCCA 44442 .......... .......... .......... .......... .......... .......... 105 TTAAATATGT GCATGGTTCT TCTTGAACAT GCTATCACAT ACTGTTCTGT CTAGTGTCAA 44382 .......... .......... .......... .......... .......... .......... 105 ATGCCACATG GTCAGTGACT CGGTTACATC TATATGTTAC ATGCAGGGGA AAAGGTGATT 44322 |||| |||||||||| .......... .......... .......... .......... ......GGGA AAAGGTGATT 119 ATCAAATTGA TTATAAACCA GCTCCTCGAA TCTCAGAAGC AGATAAGACT AATGATCAAA 44262 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ATCAAATTGA TTATAAACCA GCTCCGCGAA TCTCAGAAGC AGATAAGACT AATGATCAAA 179 GGTACCAAAG CTTGGACTTC TAACTTTTGT CAAATATTAT ACAAGAATTT GAATATGGAC 44202 | G......... .......... .......... .......... .......... .......... 180 ATTGCACTAG AAGATATTTT TCTTTCAAGA GTTGCTTTAC TAAATTCAGC AGACTCGTAT 44142 .......... .......... .......... .......... .......... .......... 180 TTCCTGACAA TAGATGATTA TTGACTTCTA ATTGTTTACC ATAACTAAAT TTTTGATGTT 44082 .......... .......... .......... .......... .......... .......... 180 GAAATGCCTT AATATTGTCT CGAAGTAATT GATGTGTTAG TTACATGAGA TTTTTCAATT 44022 .......... .......... .......... .......... .......... .......... 180 GCGCATTGTG TAAGTACTTA AAATTAGGAA TGCAGCGCTA CTGTTTTTTT TTTTACCTTT 43962 .......... .......... .......... .......... .......... .......... 180 TATTTGCCTT CTTCACCCTC TCTACCCCAC AAAATAAAGC TTGCGTCTTT TTTTTCAACT 43902 .......... .......... .......... .......... .......... .......... 180 CATCACTTGG TCAAAATTTG CTAAAAGGTG CTAACCCTAC ACAAAACCTT TTCATGTTAC 43842 .......... .......... .......... .......... .......... .......... 180 TAATTATGAG ATTTTATTGA TATGCATAAG GTCATTACAG CGAGCACTAG ACAAGAGACT 43782 |||||||||| |||||||||| ||| |||||| .......... .......... .......... GTCATTACAG CGAGCACTAG ACAGGAGACT 210 CTATCTTCTA GTCCATGGTA CCACACAAGG TAGTGGAAAG CCTGTCTGGC ATTTCCCTGA 43722 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| |||| ||||| CTATCTTCTA GTCCATGGTA CCACACATGG TAGTGGAAAG CCCGTCTGGC ATTTTCCTGA 270 AAAAGTTTAT GAGTCTGAAG AGAATTTGCG CAAGGTAAAT AGTACTTATC AGTCCATTTC 43662 |||||||||| |||||||||| |||| ||||| |||| AAAAGTTTAT GAGTCTGAAG AGAACTTGCG CAAG...... .......... .......... 304 TATGCTGATT TCAGTAATTT GGGTTAGGAA AATGAAAATA TAAGTTGCAA CTATTTGCAG 43602 .......... .......... .......... .......... .......... .......... 304 TGTGCTGAGT CTGCCTTAGA ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA 43542 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCTGAGT CTGCCCTAGA ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA 364 AATGCCCCTA TGGGTCATAT GGTCATGCAA CCCACTGAAG ACAAGAAAAT CCCTTCAATC 43482 || ||||||| |||||||||| |||||| ||| |||||||||| |||||||||| | |||||| AACGCCCCTA TGGGTCATAT GGTCATACAA CCCACTGAAG ACAAGAAAAT TCTGTCAATC 424 AAGGTATGTA CATTTTAATT ATTGAAAGTA TTGAAGAAAA AGAGAGTAAA GAAATTCTCT 43422 ||| AAG....... .......... .......... .......... .......... .......... 427 CATCCCACGG TGAGTGAGGG ACGGAAGGAG GGAAATTTCC TGATAGCTTC TGCAAATTTT 43362 .......... .......... .......... .......... .......... .......... 427 TGTGCTTCTT ATATATTCTA TATTTTATTG TGGCAGCGCT TCTTCTTCAA ATCCCAAGTT 43302 |||| |||||||||| ||||||||| .......... .......... .......... ......CGCT TCTTCTTCAA ATCCCAAGTC 451 ATTGCAGCCA ACAAATTTGA TATTAGGAAA TGTGATGATT TTGTCTGGGT GACCAAAGAT 43242 ||||||| || |||||||||| |||||| || |||||||||| |||||||||| ||| |||||| ATTGCAGTCA ACAAATTTGA TATTAGAAAG TGTGATGATT TTGTCTGGGT GACAAAAGAT 511 GAACTGTTGG AATAC-TTTC CCGAGCAAGC TGAATTCCTG AACAA 43198 ||| |||||| ||||| |||| | |||||||| |||||||||| ||||| GAATTGTTGG AATACTTTTC CTGAGCAAGC TGAATTCCTG AACAA 556 hqPGS_C04HBa0127E11.1-_SGN-E267684+ (45401 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43198) ******************************************************************************** EST sequence 137 +strand 572 n (File: SGN-E248848+) 1 AAATTGTGGC TTCAGTGCTC TTTGAAAGAT TACCGGTAGT GGTACCCAAA ATCGATCCTA 61 CTGTATATGC TTTTCAAGAA TTTTCGTTTC GTTGGAGGCA GCAATATCGG CGAGAGTATC 121 CAGAAAGTTT TCTGAAGAAG TCTGATACCA GGGGAAAAGG TGATTATCAA ATTGATTATA 181 AACCAGCTCC TCGAATCTCA GAAGCAGATA AGACTAATGA TCAAAGGTCA TTACAGCGAG 241 CACTAGACAA GAGACTCTAT CTTCTAGTCC ATGGTACCAC ACAAGGTAGT GGAAAGCCTG 301 TCTGGCATTT CCCTGAAAAA GTTTATGAGT CTGAAGAGAA TTTGCGCAAG TGTGCTGAGT 361 CTGCCTTAGA ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA AATGCCCCTA 421 TGGGTCATAT GGTCATGCAA CCCACTGAAG ACAAGAAAAT CCCTTCAATC AAGCGCTTCT 481 TCTTCAAATC CCAAGTTATT GCAGCCAACA AATTTGATAT TAGGAAATGT GATGATTTTG 541 TCTGGGTGAC CAAAGATGAA CTGTTGGAAT AC Predicted gene structure (within gDNA segment 46047 to 42617): Exon 1 45447 45363 ( 85 n); cDNA 1 85 ( 85 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 44819 44754 ( 66 n); cDNA 86 151 ( 66 n); score: 1.000 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 44335 44261 ( 75 n); cDNA 152 226 ( 75 n); score: 1.000 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 4 43811 43688 ( 124 n); cDNA 227 350 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 43601 43479 ( 123 n); cDNA 351 473 ( 123 n); score: 1.000 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 6 43325 43227 ( 99 n); cDNA 474 572 ( 99 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E248848+ 1.000 572 1.000 C PGS_C04HBa0127E11.1-_SGN-E248848+ (45447 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43227) Alignment (genomic DNA sequence = upper lines): AAATTGTGGC TTCAGTGCTC TTTGAAAGAT TACCGGTAGT GGTACCCAAA ATCGATCCTA 45388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGTGGC TTCAGTGCTC TTTGAAAGAT TACCGGTAGT GGTACCCAAA ATCGATCCTA 60 CTGTATATGC TTTTCAAGAA TTTTCGTAAG TTTTTTCTTT TTTTCTGTTC AATTGTTGCA 45328 |||||||||| |||||||||| ||||| CTGTATATGC TTTTCAAGAA TTTTC..... .......... .......... .......... 85 CGAAATCGAA GTGTAATCAA TCCCTTTTGT AATCCAATTA CAATGATTTA CTTTTAGAGC 45268 .......... .......... .......... .......... .......... .......... 85 GATAATTGCT GGTTCGTATA ATAGAATGAT CAAAACATTT ACTAGTGTTG ATTTTTTTTT 45208 .......... .......... .......... .......... .......... .......... 85 TCGCTTTTCA GAAACTGTGC TGGTTAATTA GGGATTAAGG GGTACTTTGA TATGTTTGCT 45148 .......... .......... .......... .......... .......... .......... 85 TGAGAAAAAT AGTGCTAAAA AACAATAATT TTATGCCTTA GTCAGGTCAA ATTATGAATC 45088 .......... .......... .......... .......... .......... .......... 85 TTCGCTATTT TGTAAGTTTG ATGAAGTAAA TCTACGAAAG AAAATAGTTT CTTTTGTCCA 45028 .......... .......... .......... .......... .......... .......... 85 AAATTTTGCA GTGGTTTCTA ATGCTTAGGA GATAATGTGT AATGAAGTTG AGAATAATGA 44968 .......... .......... .......... .......... .......... .......... 85 GGTTATAGAA TGGGTTAGAA GGAGAAAATG AGAATAAAAA AGAGCAAAGG TTCATGAACA 44908 .......... .......... .......... .......... .......... .......... 85 AGAGTTGGCG AATGACAATG TAGATGATTG TTTAACGTAA TTGGTGTTTA GTTGATTGCA 44848 .......... .......... .......... .......... .......... .......... 85 GTAATTTTAT GATTAATTTC TTTTATAGGT TTCGTTGGAG GCAGCAATAT CGGCGAGAGT 44788 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT TTCGTTGGAG GCAGCAATAT CGGCGAGAGT 117 ATCCAGAAAG TTTTCTGAAG AAGTCTGATA CCAGGTACAT TGATGTTGCA TTTTTTGAAT 44728 |||||||||| |||||||||| |||||||||| |||| ATCCAGAAAG TTTTCTGAAG AAGTCTGATA CCAG...... .......... .......... 151 TACACCTTGC CATTGAATAC CTTTCCTTGT GAATTATGTA TCTTCATTTA TGATGAAATA 44668 .......... .......... .......... .......... .......... .......... 151 TTAACTAATG AATGGTATGA AGAGTGTGCA TAGGATGTAT GAAATAAGTT TAAACATAAT 44608 .......... .......... .......... .......... .......... .......... 151 AGACCAGTGA AATTGATTTA GGAGCTGAAT AGCACAAAGA GAGCATAAAA GTCGAAAAGT 44548 .......... .......... .......... .......... .......... .......... 151 GATGAAGATT TTCTGAGCGT TTTTCTTTAC TCTAGAAATA GAGTTTGTCT AAATTGCTTG 44488 .......... .......... .......... .......... .......... .......... 151 TGTAGTATTA TTGCCTTTTC AAGCATGTGT TCTTCCTTAT TAGCCATTAA ATATGTGCAT 44428 .......... .......... .......... .......... .......... .......... 151 GGTTCTTCTT GAACATGCTA TCACATACTG TTCTGTCTAG TGTCAAATGC CACATGGTCA 44368 .......... .......... .......... .......... .......... .......... 151 GTGACTCGGT TACATCTATA TGTTACATGC AGGGGAAAAG GTGATTATCA AATTGATTAT 44308 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GGGAAAAG GTGATTATCA AATTGATTAT 179 AAACCAGCTC CTCGAATCTC AGAAGCAGAT AAGACTAATG ATCAAAGGTA CCAAAGCTTG 44248 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAACCAGCTC CTCGAATCTC AGAAGCAGAT AAGACTAATG ATCAAAG... .......... 226 GACTTCTAAC TTTTGTCAAA TATTATACAA GAATTTGAAT ATGGACATTG CACTAGAAGA 44188 .......... .......... .......... .......... .......... .......... 226 TATTTTTCTT TCAAGAGTTG CTTTACTAAA TTCAGCAGAC TCGTATTTCC TGACAATAGA 44128 .......... .......... .......... .......... .......... .......... 226 TGATTATTGA CTTCTAATTG TTTACCATAA CTAAATTTTT GATGTTGAAA TGCCTTAATA 44068 .......... .......... .......... .......... .......... .......... 226 TTGTCTCGAA GTAATTGATG TGTTAGTTAC ATGAGATTTT TCAATTGCGC ATTGTGTAAG 44008 .......... .......... .......... .......... .......... .......... 226 TACTTAAAAT TAGGAATGCA GCGCTACTGT TTTTTTTTTT ACCTTTTATT TGCCTTCTTC 43948 .......... .......... .......... .......... .......... .......... 226 ACCCTCTCTA CCCCACAAAA TAAAGCTTGC GTCTTTTTTT TCAACTCATC ACTTGGTCAA 43888 .......... .......... .......... .......... .......... .......... 226 AATTTGCTAA AAGGTGCTAA CCCTACACAA AACCTTTTCA TGTTACTAAT TATGAGATTT 43828 .......... .......... .......... .......... .......... .......... 226 TATTGATATG CATAAGGTCA TTACAGCGAG CACTAGACAA GAGACTCTAT CTTCTAGTCC 43768 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTCA TTACAGCGAG CACTAGACAA GAGACTCTAT CTTCTAGTCC 270 ATGGTACCAC ACAAGGTAGT GGAAAGCCTG TCTGGCATTT CCCTGAAAAA GTTTATGAGT 43708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTACCAC ACAAGGTAGT GGAAAGCCTG TCTGGCATTT CCCTGAAAAA GTTTATGAGT 330 CTGAAGAGAA TTTGCGCAAG GTAAATAGTA CTTATCAGTC CATTTCTATG CTGATTTCAG 43648 |||||||||| |||||||||| CTGAAGAGAA TTTGCGCAAG .......... .......... .......... .......... 350 TAATTTGGGT TAGGAAAATG AAAATATAAG TTGCAACTAT TTGCAGTGTG CTGAGTCTGC 43588 |||| |||||||||| .......... .......... .......... .......... ......TGTG CTGAGTCTGC 364 CTTAGAATCT TTCATTGGAG ATCTTTCACA TACATATTTT GTTGGAAATG CCCCTATGGG 43528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGAATCT TTCATTGGAG ATCTTTCACA TACATATTTT GTTGGAAATG CCCCTATGGG 424 TCATATGGTC ATGCAACCCA CTGAAGACAA GAAAATCCCT TCAATCAAGG TATGTACATT 43468 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCATATGGTC ATGCAACCCA CTGAAGACAA GAAAATCCCT TCAATCAAG. .......... 473 TTAATTATTG AAAGTATTGA AGAAAAAGAG AGTAAAGAAA TTCTCTCATC CCACGGTGAG 43408 .......... .......... .......... .......... .......... .......... 473 TGAGGGACGG AAGGAGGGAA ATTTCCTGAT AGCTTCTGCA AATTTTTGTG CTTCTTATAT 43348 .......... .......... .......... .......... .......... .......... 473 ATTCTATATT TTATTGTGGC AGCGCTTCTT CTTCAAATCC CAAGTTATTG CAGCCAACAA 43288 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..CGCTTCTT CTTCAAATCC CAAGTTATTG CAGCCAACAA 511 ATTTGATATT AGGAAATGTG ATGATTTTGT CTGGGTGACC AAAGATGAAC TGTTGGAATA 43228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGATATT AGGAAATGTG ATGATTTTGT CTGGGTGACC AAAGATGAAC TGTTGGAATA 571 C 43227 | C 572 hqPGS_C04HBa0127E11.1-_SGN-E248848+ (45447 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43227) ******************************************************************************** EST sequence 74 +strand 669 n (File: SGN-E268276+) 1 ACACATTCAC GGAGAAATTT TAATTTGGGT TTTTAGGGTT TGTGAAAATG CAGAGGTGCT 61 GTTCGTCTGC TGGTCGATCT GTGACATCTA AACGATGGTT TTCTTCATCA AGCACTGATA 121 AAATTGTTGC TTCAGTGCTC TTCGAGAGAT TACCAGTTAT AGTTCCCAAA ATCGATCCTA 181 CTGTATATGC TTTTCAAGAA TTTTCGTTTC GTTGGAGGCA GCAGTATCGA CGAGAGTATC 241 CAGAAAGTTT TCTGAAGAAG TCGGATACTA GGGGAAAAGG TGATTATCAA ATTGATTATA 301 AACCAGCTCC GCGAATCTCA GAAGCAGATA AGACTAATGA TCAAAGGTCA TTACAGCGAG 361 CACTAGACAG GAGACTCTAT CTTCTAGTCC ATGGTACCAC ACATGGTAGT GGAAAGCCCG 421 TCTGGCATTT TCCTGAAAAA GTTTATGAGT CTGAAGAGAA CTTGCGCAAG TGTGCTGAGT 481 CTGCCCTAGA ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA AACGCCCCTA 541 TGGGTCATAT GGTCATACAA CCCACTGAAG ACAAGAAAAT TCTGTCAATC AAGCGCTTCT 601 TCTTCAAATC CCAAGTCATT GCAGTCAACA AATTTGATAT TAGAAAGTGT GATGATTTTG 661 TCTGGGTGA Predicted gene structure (within gDNA segment 46344 to 42406): Exon 1 45499 45363 ( 137 n); cDNA 68 205 ( 138 n); score: 0.858 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 206 271 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 272 346 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 347 470 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43479 ( 123 n); cDNA 471 593 ( 123 n); score: 0.951 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.92), Pa: 0.992 (s: 0.96) Exon 6 43325 43250 ( 76 n); cDNA 594 669 ( 76 n); score: 0.947 MATCH C04HBa0127E11.1- SGN-E268276+ 0.934 601 0.898 C PGS_C04HBa0127E11.1-_SGN-E268276+ (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43250) Alignment (genomic DNA sequence = upper lines): TGCTGTTC-A TCTGCGATAG GTAAACGATG GTTTTCTTCA TTCAACAATG ATAAAATTGT 45441 ||||| || | |||| || | ||||||||| |||||||||| | | || || |||||||||| TGCTGGTCGA TCTGTGACAT CTAAACGATG GTTTTCTTCA TCAAGCACTG ATAAAATTGT 127 GGCTTCAGTG CTCTTTGAAA GATTACCGGT AGTGGTACCC AAAATCGATC CTACTGTATA 45381 ||||||||| ||||| || | ||||||| || | || ||| |||||||||| |||||||||| TGCTTCAGTG CTCTTCGAGA GATTACCAGT TATAGTTCCC AAAATCGATC CTACTGTATA 187 TGCTTTTCAA GAATTTTCGT AAGTTTTTTC TTTTTTTCTG TTCAATTGTT GCACGAAATC 45321 |||||||||| |||||||| TGCTTTTCAA GAATTTTC.. .......... .......... .......... .......... 205 GAAGTGTAAT CAATCCCTTT TGTAATCCAA TTACAATGAT TTACTTTTAG AGCGATAATT 45261 .......... .......... .......... .......... .......... .......... 205 GCTGGTTCGT ATAATAGAAT GATCAAAACA TTTACTAGTG TTGATTTTTT TTTTCGCTTT 45201 .......... .......... .......... .......... .......... .......... 205 TCAGAAACTG TGCTGGTTAA TTAGGGATTA AGGGGTACTT TGATATGTTT GCTTGAGAAA 45141 .......... .......... .......... .......... .......... .......... 205 AATAGTGCTA AAAAACAATA ATTTTATGCC TTAGTCAGGT CAAATTATGA ATCTTCGCTA 45081 .......... .......... .......... .......... .......... .......... 205 TTTTGTAAGT TTGATGAAGT AAATCTACGA AAGAAAATAG TTTCTTTTGT CCAAAATTTT 45021 .......... .......... .......... .......... .......... .......... 205 GCAGTGGTTT CTAATGCTTA GGAGATAATG TGTAATGAAG TTGAGAATAA TGAGGTTATA 44961 .......... .......... .......... .......... .......... .......... 205 GAATGGGTTA GAAGGAGAAA ATGAGAATAA AAAAGAGCAA AGGTTCATGA ACAAGAGTTG 44901 .......... .......... .......... .......... .......... .......... 205 GCGAATGACA ATGTAGATGA TTGTTTAACG TAATTGGTGT TTAGTTGATT GCAGTAATTT 44841 .......... .......... .......... .......... .......... .......... 205 TATGATTAAT TTCTTTTATA GGTTTCGTTG GAGGCAGCAA TATCGGCGAG AGTATCCAGA 44781 ||||||||| ||||||||| ||||| |||| |||||||||| .......... .......... .GTTTCGTTG GAGGCAGCAG TATCGACGAG AGTATCCAGA 244 AAGTTTTCTG AAGAAGTCTG ATACCAGGTA CATTGATGTT GCATTTTTTG AATTACACCT 44721 |||||||||| |||||||| | |||| || AAGTTTTCTG AAGAAGTCGG ATACTAG... .......... .......... .......... 271 TGCCATTGAA TACCTTTCCT TGTGAATTAT GTATCTTCAT TTATGATGAA ATATTAACTA 44661 .......... .......... .......... .......... .......... .......... 271 ATGAATGGTA TGAAGAGTGT GCATAGGATG TATGAAATAA GTTTAAACAT AATAGACCAG 44601 .......... .......... .......... .......... .......... .......... 271 TGAAATTGAT TTAGGAGCTG AATAGCACAA AGAGAGCATA AAAGTCGAAA AGTGATGAAG 44541 .......... .......... .......... .......... .......... .......... 271 ATTTTCTGAG CGTTTTTCTT TACTCTAGAA ATAGAGTTTG TCTAAATTGC TTGTGTAGTA 44481 .......... .......... .......... .......... .......... .......... 271 TTATTGCCTT TTCAAGCATG TGTTCTTCCT TATTAGCCAT TAAATATGTG CATGGTTCTT 44421 .......... .......... .......... .......... .......... .......... 271 CTTGAACATG CTATCACATA CTGTTCTGTC TAGTGTCAAA TGCCACATGG TCAGTGACTC 44361 .......... .......... .......... .......... .......... .......... 271 GGTTACATCT ATATGTTACA TGCAGGGGAA AAGGTGATTA TCAAATTGAT TATAAACCAG 44301 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGGAA AAGGTGATTA TCAAATTGAT TATAAACCAG 306 CTCCTCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG GTACCAAAGC TTGGACTTCT 44241 |||| ||||| |||||||||| |||||||||| |||||||||| CTCCGCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG .......... .......... 346 AACTTTTGTC AAATATTATA CAAGAATTTG AATATGGACA TTGCACTAGA AGATATTTTT 44181 .......... .......... .......... .......... .......... .......... 346 CTTTCAAGAG TTGCTTTACT AAATTCAGCA GACTCGTATT TCCTGACAAT AGATGATTAT 44121 .......... .......... .......... .......... .......... .......... 346 TGACTTCTAA TTGTTTACCA TAACTAAATT TTTGATGTTG AAATGCCTTA ATATTGTCTC 44061 .......... .......... .......... .......... .......... .......... 346 GAAGTAATTG ATGTGTTAGT TACATGAGAT TTTTCAATTG CGCATTGTGT AAGTACTTAA 44001 .......... .......... .......... .......... .......... .......... 346 AATTAGGAAT GCAGCGCTAC TGTTTTTTTT TTTACCTTTT ATTTGCCTTC TTCACCCTCT 43941 .......... .......... .......... .......... .......... .......... 346 CTACCCCACA AAATAAAGCT TGCGTCTTTT TTTTCAACTC ATCACTTGGT CAAAATTTGC 43881 .......... .......... .......... .......... .......... .......... 346 TAAAAGGTGC TAACCCTACA CAAAACCTTT TCATGTTACT AATTATGAGA TTTTATTGAT 43821 .......... .......... .......... .......... .......... .......... 346 ATGCATAAGG TCATTACAGC GAGCACTAGA CAAGAGACTC TATCTTCTAG TCCATGGTAC 43761 | |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| .........G TCATTACAGC GAGCACTAGA CAGGAGACTC TATCTTCTAG TCCATGGTAC 397 CACACAAGGT AGTGGAAAGC CTGTCTGGCA TTTCCCTGAA AAAGTTTATG AGTCTGAAGA 43701 |||||| ||| |||||||||| | |||||||| ||| |||||| |||||||||| |||||||||| CACACATGGT AGTGGAAAGC CCGTCTGGCA TTTTCCTGAA AAAGTTTATG AGTCTGAAGA 457 GAATTTGCGC AAGGTAAATA GTACTTATCA GTCCATTTCT ATGCTGATTT CAGTAATTTG 43641 ||| |||||| ||| GAACTTGCGC AAG....... .......... .......... .......... .......... 470 GGTTAGGAAA ATGAAAATAT AAGTTGCAAC TATTTGCAGT GTGCTGAGTC TGCCTTAGAA 43581 | |||||||||| |||| ||||| .......... .......... .......... .........T GTGCTGAGTC TGCCCTAGAA 491 TCTTTCATTG GAGATCTTTC ACATACATAT TTTGTTGGAA ATGCCCCTAT GGGTCATATG 43521 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TCTTTCATTG GAGATCTTTC ACATACATAT TTTGTTGGAA ACGCCCCTAT GGGTCATATG 551 GTCATGCAAC CCACTGAAGA CAAGAAAATC CCTTCAATCA AGGTATGTAC ATTTTAATTA 43461 ||||| |||| |||||||||| ||||||||| | ||||||| || GTCATACAAC CCACTGAAGA CAAGAAAATT CTGTCAATCA AG........ .......... 593 TTGAAAGTAT TGAAGAAAAA GAGAGTAAAG AAATTCTCTC ATCCCACGGT GAGTGAGGGA 43401 .......... .......... .......... .......... .......... .......... 593 CGGAAGGAGG GAAATTTCCT GATAGCTTCT GCAAATTTTT GTGCTTCTTA TATATTCTAT 43341 .......... .......... .......... .......... .......... .......... 593 ATTTTATTGT GGCAGCGCTT CTTCTTCAAA TCCCAAGTTA TTGCAGCCAA CAAATTTGAT 43281 ||||| |||||||||| |||||||| | |||||| ||| |||||||||| .......... .....CGCTT CTTCTTCAAA TCCCAAGTCA TTGCAGTCAA CAAATTTGAT 638 ATTAGGAAAT GTGATGATTT TGTCTGGGTG A 43250 ||||| || | |||||||||| |||||||||| | ATTAGAAAGT GTGATGATTT TGTCTGGGTG A 669 hqPGS_C04HBa0127E11.1-_SGN-E268276+ (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43250) ******************************************************************************** EST sequence 79 +strand 643 n (File: SGN-E342279+) 1 GAGAAATTTT AATTTGGGTT TTTAGGGTTT GTGAAAATGC AGAGGTGCTG TTCGTCTGCT 61 GGTCGATCTG TGACATCTAA ACGATGGTTT TCTTCATCAA GCACTGATAA AATTGTTGCT 121 TCAGTGCTCT TCGAGAGATT ACCAGTTATA GTTCCCAAAA TCGATCCTAC TGTATATGCT 181 TTTCAAGAAT TTTCGTTTCG TTGGAGGCAG CAGTATCGAC GAGAGTATCC AGAAAGTTTT 241 CTGAAGAAGT CGGATACTAG GGGAAAAGGT GATTATCAAA TTGATTATAA ACCAGCTCCG 301 CGAATCTCAG AAGCAGATAA GACTAATGAT CAAAGGTCAT TACAGCGAGC ACTAGACAGG 361 AGACTCTATC TTCTAGTCCA TGGTACCACA CATGGTAGTG GAAAGCCCGT CTGGCATTTT 421 CCTGAAAAAG TTTATGAGTC TGAAGAGAAC TTGCGCAAGT GTGCTGAGTC TGCCCTAGAA 481 TCTTTCATTG GAGATCTTTC ACATACATAT TTTGTTGGAA ACGCCCCTAT GGGTCATATG 541 GTCATACAAC CCACTGAAGA CAAGAAAATT CTGTCAATCA AGCGCTTCTT CTTCAAATCC 601 CAGTCATTGC AGTCAACAAA TTTGATATTA GAAAGTGTGA TGA Predicted gene structure (within gDNA segment 46234 to 42546): Exon 1 45479 45363 ( 117 n); cDNA 78 194 ( 117 n); score: 0.897 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 195 260 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 261 335 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 336 459 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43479 ( 123 n); cDNA 460 582 ( 123 n); score: 0.951 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.92), Pa: 0.992 (s: 0.94) Exon 6 43325 43264 ( 62 n); cDNA 583 643 ( 61 n); score: 0.919 MATCH C04HBa0127E11.1- SGN-E342279+ 0.942 567 0.882 C PGS_C04HBa0127E11.1-_SGN-E342279+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43264) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| || || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCGAGAG 137 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 194 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 194 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 194 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 194 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 194 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 194 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 194 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 194 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 194 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 194 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 254 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 260 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 260 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 260 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 260 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 260 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 260 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 260 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG 316 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 335 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 335 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 335 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 335 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 335 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 335 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 335 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 347 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGT CCATGGTACC ACACATGGTA GTGGAAAGCC 407 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| || ||||||| || CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG AACTTGCGCA AG........ 459 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 459 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT GCCTTAGAAT CTTTCATTGG AGATCTTTCA 43560 || |||||||||| ||| |||||| |||||||||| |||||||||| .......... ........TG TGCTGAGTCT GCCCTAGAAT CTTTCATTGG AGATCTTTCA 501 CATACATATT TTGTTGGAAA TGCCCCTATG GGTCATATGG TCATGCAACC CACTGAAGAC 43500 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| CATACATATT TTGTTGGAAA CGCCCCTATG GGTCATATGG TCATACAACC CACTGAAGAC 561 AAGAAAATCC CTTCAATCAA GGTATGTACA TTTTAATTAT TGAAAGTATT GAAGAAAAAG 43440 |||||||| | |||||||| | AAGAAAATTC TGTCAATCAA G......... .......... .......... .......... 582 AGAGTAAAGA AATTCTCTCA TCCCACGGTG AGTGAGGGAC GGAAGGAGGG AAATTTCCTG 43380 .......... .......... .......... .......... .......... .......... 582 ATAGCTTCTG CAAATTTTTG TGCTTCTTAT ATATTCTATA TTTTATTGTG GCAGCGCTTC 43320 |||||| .......... .......... .......... .......... .......... ....CGCTTC 588 TTCTTCAAAT CCCAAGTTAT TGCAGCCAAC AAATTTGATA TTAGGAAATG TGATGA 43264 |||||||||| ||| ||| || ||||| |||| |||||||||| |||| || || |||||| TTCTTCAAAT CCC-AGTCAT TGCAGTCAAC AAATTTGATA TTAGAAAGTG TGATGA 643 hqPGS_C04HBa0127E11.1-_SGN-E342279+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43264) ******************************************************************************** EST sequence 65 +strand 598 n (File: SGN-E325293+) 1 GTTTGTGAAA ATGCAGAGGT GCTGTTCGTC TGCTGGTCGA TCTGTGACAT CTAAACGATG 61 GTTTTCTTCA TCAAGCACTG ATAAAATTGT TGCTTCAGTG CTCTTCGAGA GATTACCAGT 121 TATAGTTCCC AAAATCGATC CTACTGTATA TGCTTTTCAA GAATTTTCGT TTCGTTGGAG 181 GCAGCAGTAT CGACGAGAGT ATCCAGAAAG TTTTCTGAAG AAGTCGGATA CTAGGGGAAA 241 AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG ATAAGACTAA 301 TGATCAAAGG TCATTACAGC GAGCACTAGA CAGGAGACTC TATCTTCTAG TCCATGGTAC 361 CACACATGGT AGTGGAAAGC CCGTCTGGCA TTTTCCTGAA AAAGTTTATG AGTCTGAAGA 421 GAACTTGCGC AAGTGTGCTG AGTCTGCCCT AGAATCTTTC ATTGGAGATC TTTCACATAC 481 ATATTTTGTT GGAAACGCCC CTATGGGTCA TATGGTCATA CAACCCACTG AAGACAAGAA 541 AATTCTGTCA ATCAAGCGCT TCTTCTTCAA ATCCCAAGTC ATTGCAGTCA ACAAATTT Predicted gene structure (within gDNA segment 47273 to 42332): Exon 1 45479 45363 ( 117 n); cDNA 52 168 ( 117 n); score: 0.897 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 169 234 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 235 309 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 310 433 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43479 ( 123 n); cDNA 434 556 ( 123 n); score: 0.951 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.92), Pa: 0.992 (s: 0.95) Exon 6 43325 43284 ( 42 n); cDNA 557 598 ( 42 n); score: 0.952 MATCH C04HBa0127E11.1- SGN-E325293+ 0.945 547 0.915 C PGS_C04HBa0127E11.1-_SGN-E325293+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43284) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| || || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCGAGAG 111 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 168 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 168 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 168 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 168 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 168 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 168 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 168 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 168 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 168 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 168 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 228 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 234 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 234 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 234 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 234 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 234 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 234 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 234 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG 290 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 309 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 309 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 309 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 309 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 309 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 309 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 309 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 321 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGT CCATGGTACC ACACATGGTA GTGGAAAGCC 381 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| || ||||||| || CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG AACTTGCGCA AG........ 433 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 433 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT GCCTTAGAAT CTTTCATTGG AGATCTTTCA 43560 || |||||||||| ||| |||||| |||||||||| |||||||||| .......... ........TG TGCTGAGTCT GCCCTAGAAT CTTTCATTGG AGATCTTTCA 475 CATACATATT TTGTTGGAAA TGCCCCTATG GGTCATATGG TCATGCAACC CACTGAAGAC 43500 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| CATACATATT TTGTTGGAAA CGCCCCTATG GGTCATATGG TCATACAACC CACTGAAGAC 535 AAGAAAATCC CTTCAATCAA GGTATGTACA TTTTAATTAT TGAAAGTATT GAAGAAAAAG 43440 |||||||| | |||||||| | AAGAAAATTC TGTCAATCAA G......... .......... .......... .......... 556 AGAGTAAAGA AATTCTCTCA TCCCACGGTG AGTGAGGGAC GGAAGGAGGG AAATTTCCTG 43380 .......... .......... .......... .......... .......... .......... 556 ATAGCTTCTG CAAATTTTTG TGCTTCTTAT ATATTCTATA TTTTATTGTG GCAGCGCTTC 43320 |||||| .......... .......... .......... .......... .......... ....CGCTTC 562 TTCTTCAAAT CCCAAGTTAT TGCAGCCAAC AAATTT 43284 |||||||||| ||||||| || ||||| |||| |||||| TTCTTCAAAT CCCAAGTCAT TGCAGTCAAC AAATTT 598 hqPGS_C04HBa0127E11.1-_SGN-E325293+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43284) ******************************************************************************** EST sequence 66 +strand 553 n (File: SGN-E316469+) 1 TCTGCTGGTC GATCTGTGAC ATCTAAACGA TGGTTTTCTT CATCAAGCAC TGATAAAATT 61 GTTGCTTCAG TGCTCTTCCA GAGATTACCA GTTATAGTTC CCAAAATCGA TCCTACTGTA 121 TATGCTTTTC AAGAATTTTC GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA 181 AGTTTTCTGA ATAAGTCGGA TACTAGGGGA AAAGGTGATT ATCGAATTGA TTATAAACCA 241 GCTCCGCGAA TCTCACAAGC AGATAAGACT AATGATCAAA GGGCATTACA GCGAGCACTA 301 GACAGGAGAC TCTATCTTCT AGGCCATGGT ACCACACATG GTAGTGGAAA GCCCGTCTGG 361 CATTTTCCTG AAAAAGGTTA TGAGTCTGAA GAGAACTTGC GCAAGTGTGC TGAGTCTGCC 421 CTAGAATCTT TCATTGGAGA TCTTTCACAT ACATATTTTG GTGGAAACGC CCCTATGGGT 481 CATATGGTCA TACTACCCAC TGAAGACTAG AAAATTCTGT CAATCAAGCG CTTCTTCCTC 541 AAATCCCAAG TCA Predicted gene structure (within gDNA segment 46993 to 42286): Exon 1 45499 45363 ( 137 n); cDNA 3 140 ( 138 n); score: 0.850 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 141 206 ( 66 n); score: 0.924 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.90), Pa: 0.977 (s: 0.94) Exon 3 44335 44261 ( 75 n); cDNA 207 281 ( 75 n); score: 0.960 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.96), Pa: 0.620 (s: 0.94) Exon 4 43811 43688 ( 124 n); cDNA 282 405 ( 124 n); score: 0.935 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.94), Pa: 0.950 (s: 0.98) Exon 5 43601 43479 ( 123 n); cDNA 406 528 ( 123 n); score: 0.927 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.88), Pa: 0.992 (s: 0) Exon 6 43325 43303 ( 23 n); cDNA 529 551 ( 23 n); score: 0.957 MATCH C04HBa0127E11.1- SGN-E316469+ 0.913 548 0.991 C PGS_C04HBa0127E11.1-_SGN-E316469+ (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43303) Alignment (genomic DNA sequence = upper lines): TGCTGTTC-A TCTGCGATAG GTAAACGATG GTTTTCTTCA TTCAACAATG ATAAAATTGT 45441 ||||| || | |||| || | ||||||||| |||||||||| | | || || |||||||||| TGCTGGTCGA TCTGTGACAT CTAAACGATG GTTTTCTTCA TCAAGCACTG ATAAAATTGT 62 GGCTTCAGTG CTCTTTGAAA GATTACCGGT AGTGGTACCC AAAATCGATC CTACTGTATA 45381 ||||||||| ||||| | | ||||||| || | || ||| |||||||||| |||||||||| TGCTTCAGTG CTCTTCCAGA GATTACCAGT TATAGTTCCC AAAATCGATC CTACTGTATA 122 TGCTTTTCAA GAATTTTCGT AAGTTTTTTC TTTTTTTCTG TTCAATTGTT GCACGAAATC 45321 |||||||||| |||||||| TGCTTTTCAA GAATTTTC.. .......... .......... .......... .......... 140 GAAGTGTAAT CAATCCCTTT TGTAATCCAA TTACAATGAT TTACTTTTAG AGCGATAATT 45261 .......... .......... .......... .......... .......... .......... 140 GCTGGTTCGT ATAATAGAAT GATCAAAACA TTTACTAGTG TTGATTTTTT TTTTCGCTTT 45201 .......... .......... .......... .......... .......... .......... 140 TCAGAAACTG TGCTGGTTAA TTAGGGATTA AGGGGTACTT TGATATGTTT GCTTGAGAAA 45141 .......... .......... .......... .......... .......... .......... 140 AATAGTGCTA AAAAACAATA ATTTTATGCC TTAGTCAGGT CAAATTATGA ATCTTCGCTA 45081 .......... .......... .......... .......... .......... .......... 140 TTTTGTAAGT TTGATGAAGT AAATCTACGA AAGAAAATAG TTTCTTTTGT CCAAAATTTT 45021 .......... .......... .......... .......... .......... .......... 140 GCAGTGGTTT CTAATGCTTA GGAGATAATG TGTAATGAAG TTGAGAATAA TGAGGTTATA 44961 .......... .......... .......... .......... .......... .......... 140 GAATGGGTTA GAAGGAGAAA ATGAGAATAA AAAAGAGCAA AGGTTCATGA ACAAGAGTTG 44901 .......... .......... .......... .......... .......... .......... 140 GCGAATGACA ATGTAGATGA TTGTTTAACG TAATTGGTGT TTAGTTGATT GCAGTAATTT 44841 .......... .......... .......... .......... .......... .......... 140 TATGATTAAT TTCTTTTATA GGTTTCGTTG GAGGCAGCAA TATCGGCGAG AGTATCCAGA 44781 ||||||||| ||||||||| ||||| |||| |||||||||| .......... .......... .GTTTCGTTG GAGGCAGCAG TATCGACGAG AGTATCCAGA 179 AAGTTTTCTG AAGAAGTCTG ATACCAGGTA CATTGATGTT GCATTTTTTG AATTACACCT 44721 |||||||||| || ||||| | |||| || AAGTTTTCTG AATAAGTCGG ATACTAG... .......... .......... .......... 206 TGCCATTGAA TACCTTTCCT TGTGAATTAT GTATCTTCAT TTATGATGAA ATATTAACTA 44661 .......... .......... .......... .......... .......... .......... 206 ATGAATGGTA TGAAGAGTGT GCATAGGATG TATGAAATAA GTTTAAACAT AATAGACCAG 44601 .......... .......... .......... .......... .......... .......... 206 TGAAATTGAT TTAGGAGCTG AATAGCACAA AGAGAGCATA AAAGTCGAAA AGTGATGAAG 44541 .......... .......... .......... .......... .......... .......... 206 ATTTTCTGAG CGTTTTTCTT TACTCTAGAA ATAGAGTTTG TCTAAATTGC TTGTGTAGTA 44481 .......... .......... .......... .......... .......... .......... 206 TTATTGCCTT TTCAAGCATG TGTTCTTCCT TATTAGCCAT TAAATATGTG CATGGTTCTT 44421 .......... .......... .......... .......... .......... .......... 206 CTTGAACATG CTATCACATA CTGTTCTGTC TAGTGTCAAA TGCCACATGG TCAGTGACTC 44361 .......... .......... .......... .......... .......... .......... 206 GGTTACATCT ATATGTTACA TGCAGGGGAA AAGGTGATTA TCAAATTGAT TATAAACCAG 44301 ||||| |||||||||| || ||||||| |||||||||| .......... .......... .....GGGAA AAGGTGATTA TCGAATTGAT TATAAACCAG 241 CTCCTCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG GTACCAAAGC TTGGACTTCT 44241 |||| ||||| |||| ||||| |||||||||| |||||||||| CTCCGCGAAT CTCACAAGCA GATAAGACTA ATGATCAAAG .......... .......... 281 AACTTTTGTC AAATATTATA CAAGAATTTG AATATGGACA TTGCACTAGA AGATATTTTT 44181 .......... .......... .......... .......... .......... .......... 281 CTTTCAAGAG TTGCTTTACT AAATTCAGCA GACTCGTATT TCCTGACAAT AGATGATTAT 44121 .......... .......... .......... .......... .......... .......... 281 TGACTTCTAA TTGTTTACCA TAACTAAATT TTTGATGTTG AAATGCCTTA ATATTGTCTC 44061 .......... .......... .......... .......... .......... .......... 281 GAAGTAATTG ATGTGTTAGT TACATGAGAT TTTTCAATTG CGCATTGTGT AAGTACTTAA 44001 .......... .......... .......... .......... .......... .......... 281 AATTAGGAAT GCAGCGCTAC TGTTTTTTTT TTTACCTTTT ATTTGCCTTC TTCACCCTCT 43941 .......... .......... .......... .......... .......... .......... 281 CTACCCCACA AAATAAAGCT TGCGTCTTTT TTTTCAACTC ATCACTTGGT CAAAATTTGC 43881 .......... .......... .......... .......... .......... .......... 281 TAAAAGGTGC TAACCCTACA CAAAACCTTT TCATGTTACT AATTATGAGA TTTTATTGAT 43821 .......... .......... .......... .......... .......... .......... 281 ATGCATAAGG TCATTACAGC GAGCACTAGA CAAGAGACTC TATCTTCTAG TCCATGGTAC 43761 | ||||||||| |||||||||| || ||||||| |||||||||| ||||||||| .........G GCATTACAGC GAGCACTAGA CAGGAGACTC TATCTTCTAG GCCATGGTAC 332 CACACAAGGT AGTGGAAAGC CTGTCTGGCA TTTCCCTGAA AAAGTTTATG AGTCTGAAGA 43701 |||||| ||| |||||||||| | |||||||| ||| |||||| |||| ||||| |||||||||| CACACATGGT AGTGGAAAGC CCGTCTGGCA TTTTCCTGAA AAAGGTTATG AGTCTGAAGA 392 GAATTTGCGC AAGGTAAATA GTACTTATCA GTCCATTTCT ATGCTGATTT CAGTAATTTG 43641 ||| |||||| ||| GAACTTGCGC AAG....... .......... .......... .......... .......... 405 GGTTAGGAAA ATGAAAATAT AAGTTGCAAC TATTTGCAGT GTGCTGAGTC TGCCTTAGAA 43581 | |||||||||| |||| ||||| .......... .......... .......... .........T GTGCTGAGTC TGCCCTAGAA 426 TCTTTCATTG GAGATCTTTC ACATACATAT TTTGTTGGAA ATGCCCCTAT GGGTCATATG 43521 |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| |||||||||| TCTTTCATTG GAGATCTTTC ACATACATAT TTTGGTGGAA ACGCCCCTAT GGGTCATATG 486 GTCATGCAAC CCACTGAAGA CAAGAAAATC CCTTCAATCA AGGTATGTAC ATTTTAATTA 43461 ||||| | || |||||||||| | ||||||| | ||||||| || GTCATACTAC CCACTGAAGA CTAGAAAATT CTGTCAATCA AG........ .......... 528 TTGAAAGTAT TGAAGAAAAA GAGAGTAAAG AAATTCTCTC ATCCCACGGT GAGTGAGGGA 43401 .......... .......... .......... .......... .......... .......... 528 CGGAAGGAGG GAAATTTCCT GATAGCTTCT GCAAATTTTT GTGCTTCTTA TATATTCTAT 43341 .......... .......... .......... .......... .......... .......... 528 ATTTTATTGT GGCAGCGCTT CTTCTTCAAA TCCCAAGT 43303 ||||| |||| ||||| |||||||| .......... .....CGCTT CTTCCTCAAA TCCCAAGT 551 hqPGS_C04HBa0127E11.1-_SGN-E316469+ (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43303) ******************************************************************************** EST sequence 139 +strand 568 n (File: SGN-E391665+) 1 AATGCAGAGG TGCTGTTCGT CTGCTGGTCG ATCTGTGACA TCTAAACGAT GGTTTTCTTC 61 ATCAAGCACT GATAAAATTG TTGCTTCAGT GCTCTTCGAG AGATTACCAG TTATAGTTCC 121 CAAAATCGAT CCTACTGTAT ATGCTTTTCA AGAATTTTCG TTTCGTTGGA GGCAGCAGTA 181 TCGACGAGAG TATCCAGAAA GTTTTCTGAA GAAGTCGGAT ACTAGGGGAA AAGGTGATTA 241 TCAAATTGAT TATAAACCAG CTCCGCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG 301 GTCATTACAG CGAGCACTAG ACAGGAGACT CTATCTTCTA GTCCATGGTA CCACACATGG 361 TAGTGGAAAG CCCGTCTGGC ATTTTCCTGA AAAAGTTTAT GAGTCTGAAG AGGGGGGGGG 421 GCGGTGTGCT GAGTCTGCCC TAGAATCTTT CATTGGAAAT CTTTCACATA CATATTTTGT 481 TGGAAACGCC CCTATGGGTC ATATGGTCAT ACAACCCACT GAAGAACAGA AAATTCTGTC 541 CATCAAGCGC TTCTTCTTCA AATCCCAA Predicted gene structure (within gDNA segment 47183 to 42326): Exon 1 45479 45363 ( 117 n); cDNA 43 159 ( 117 n); score: 0.897 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 160 225 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 226 300 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 301 424 ( 124 n); score: 0.895 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.80), Pa: 0.950 (s: 0.96) Exon 5 43601 43479 ( 123 n); cDNA 425 547 ( 123 n); score: 0.919 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.86), Pa: 0.992 (s: 0) Exon 6 43325 43305 ( 21 n); cDNA 548 568 ( 21 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E391665+ 0.921 526 0.926 C PGS_C04HBa0127E11.1-_SGN-E391665+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43305) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| || || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCGAGAG 102 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 159 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 159 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 159 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 159 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 159 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 159 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 159 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 159 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 159 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 159 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 219 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 225 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 225 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 225 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 225 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 225 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 225 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 225 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG 281 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 300 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 300 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 300 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 300 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 300 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 300 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 300 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 312 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGT CCATGGTACC ACACATGGTA GTGGAAAGCC 372 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| | | | CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG GGGGGGGGGC GG........ 424 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 424 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT GCCTTAGAAT CTTTCATTGG AGATCTTTCA 43560 || |||||||||| ||| |||||| |||||||||| | |||||||| .......... ........TG TGCTGAGTCT GCCCTAGAAT CTTTCATTGG AAATCTTTCA 466 CATACATATT TTGTTGGAAA TGCCCCTATG GGTCATATGG TCATGCAACC CACTGAAGAC 43500 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| ||||||||| CATACATATT TTGTTGGAAA CGCCCCTATG GGTCATATGG TCATACAACC CACTGAAGAA 526 AAGAAAATCC CTTCAATCAA GGTATGTACA TTTTAATTAT TGAAAGTATT GAAGAAAAAG 43440 ||||||| | || ||||| | CAGAAAATTC TGTCCATCAA G......... .......... .......... .......... 547 AGAGTAAAGA AATTCTCTCA TCCCACGGTG AGTGAGGGAC GGAAGGAGGG AAATTTCCTG 43380 .......... .......... .......... .......... .......... .......... 547 ATAGCTTCTG CAAATTTTTG TGCTTCTTAT ATATTCTATA TTTTATTGTG GCAGCGCTTC 43320 |||||| .......... .......... .......... .......... .......... ....CGCTTC 553 TTCTTCAAAT CCCAA 43305 |||||||||| ||||| TTCTTCAAAT CCCAA 568 hqPGS_C04HBa0127E11.1-_SGN-E391665+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43305) ******************************************************************************** EST sequence 55 +strand 541 n (File: SGN-E314036+) 1 GAAAATGCAG AGGTGCTGTT CGTCTGCTGG TCGATCTGTG ACATCTAAAC GATGGTTTTC 61 TTCATCAAGC ACTGATAAAA TTGTTGCTTC AGTGCTCTTC GAGAGATTAC CAGTTATAGT 121 TCCCAAAATC GATCCTACTG TATATGCTTT TCAAGAATTT TCGTTTCGTT GGAGGCAGCA 181 GTATCGACGA GAGTATCCAG AAAGTTTTCT GAAGAAGTCG GATACTAGGG GAAAAGGTGA 241 TTATCAAATT GATTATAAAC CAGCTCCGCG AATCTCAGAA GCAGATAAGA CTAATGATCA 301 AAGGTCATTA CAGCGAGCAC TAGACAGGAG ACTCTATCTT CTAGTCCATG GTACCACACA 361 TGGTAGTGGA AAGCCCGTCT GGCATTTTCC TGAAAAAGTT TATGAGTCTG AAGAGAACTT 421 GCGCAAGTGT GCTGAGTCTG CCCTAGAATC TTTCATTGGA GATCTTTCAC ATACATATTT 481 TGTTGGAAAC GCCCCTATGG GTCATATGGT CATACAACCC ACTGAAGACA AGAAAATTCT 541 G Predicted gene structure (within gDNA segment 47213 to 42842): Exon 1 45479 45363 ( 117 n); cDNA 46 162 ( 117 n); score: 0.897 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 163 228 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 229 303 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 304 427 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43492 ( 110 n); cDNA 428 537 ( 110 n); score: 0.973 MATCH C04HBa0127E11.1- SGN-E314036+ 0.949 492 0.909 C PGS_C04HBa0127E11.1-_SGN-E314036+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43492) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| || || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCGAGAG 105 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 162 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 162 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 162 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 162 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 162 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 162 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 162 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 162 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 162 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 162 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 222 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 228 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 228 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 228 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 228 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 228 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 228 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 228 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG 284 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 303 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 303 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 303 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 303 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 303 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 303 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 303 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 315 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGT CCATGGTACC ACACATGGTA GTGGAAAGCC 375 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| || ||||||| || CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG AACTTGCGCA AG........ 427 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 427 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT GCCTTAGAAT CTTTCATTGG AGATCTTTCA 43560 || |||||||||| ||| |||||| |||||||||| |||||||||| .......... ........TG TGCTGAGTCT GCCCTAGAAT CTTTCATTGG AGATCTTTCA 469 CATACATATT TTGTTGGAAA TGCCCCTATG GGTCATATGG TCATGCAACC CACTGAAGAC 43500 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| CATACATATT TTGTTGGAAA CGCCCCTATG GGTCATATGG TCATACAACC CACTGAAGAC 529 AAGAAAAT 43492 |||||||| AAGAAAAT 537 hqPGS_C04HBa0127E11.1-_SGN-E314036+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43492) ******************************************************************************** EST sequence 61 +strand 552 n (File: SGN-E336151+) 1 TCACTTTCAG TACTGTGGAA TTTGGGTTTT TAGGGTTTAT GAAAATGCAG AGGTGCTGTT 61 CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA TGATAAAATT GTGGCTTCAG 121 TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA TCCTACTGTA TATGCTTTTC 181 AAGAATTTTC GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA 241 AGAAGTCTGA TACCAGGGGA AAAGGTGATT ATCAAATTGA TTATAAACCA GCTCCTCGAA 301 TCTCAGAAGC AGATAAGACT AATGATCAAA GGTCATTACA GCGAGCACTA GACAAGAGAC 361 TCTATCTTCT AGTCCATGGT ACCACACAAG GTAGTGGAAA GCCTGTCTGG CATTTCCCTG 421 AAAAAGTTTA TGAGTCTGAA GAGAATTTGC GCAAGTGTGC TGAGTCTGCC TTAGAATCTT 481 TCATTGGAGA TCTTTCACAT ACATATTTTG TTGGAAATGC CCCTATGGGT CATATGGTCA 541 TGCAACCCAC TG Predicted gene structure (within gDNA segment 46152 to 42895): Exon 1 45552 45363 ( 190 n); cDNA 1 190 ( 190 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 44819 44754 ( 66 n); cDNA 191 256 ( 66 n); score: 1.000 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 44335 44261 ( 75 n); cDNA 257 331 ( 75 n); score: 1.000 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 4 43811 43688 ( 124 n); cDNA 332 455 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 43601 43505 ( 97 n); cDNA 456 552 ( 97 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E336151+ 1.000 552 1.000 C PGS_C04HBa0127E11.1-_SGN-E336151+ (45552 45363,44819 44754,44335 44261,43811 43688,43601 43505) Alignment (genomic DNA sequence = upper lines): TCACTTTCAG TACTGTGGAA TTTGGGTTTT TAGGGTTTAT GAAAATGCAG AGGTGCTGTT 45493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTTTCAG TACTGTGGAA TTTGGGTTTT TAGGGTTTAT GAAAATGCAG AGGTGCTGTT 60 CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA TGATAAAATT GTGGCTTCAG 45433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA TGATAAAATT GTGGCTTCAG 120 TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA TCCTACTGTA TATGCTTTTC 45373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA TCCTACTGTA TATGCTTTTC 180 AAGAATTTTC GTAAGTTTTT TCTTTTTTTC TGTTCAATTG TTGCACGAAA TCGAAGTGTA 45313 |||||||||| AAGAATTTTC .......... .......... .......... .......... .......... 190 ATCAATCCCT TTTGTAATCC AATTACAATG ATTTACTTTT AGAGCGATAA TTGCTGGTTC 45253 .......... .......... .......... .......... .......... .......... 190 GTATAATAGA ATGATCAAAA CATTTACTAG TGTTGATTTT TTTTTTCGCT TTTCAGAAAC 45193 .......... .......... .......... .......... .......... .......... 190 TGTGCTGGTT AATTAGGGAT TAAGGGGTAC TTTGATATGT TTGCTTGAGA AAAATAGTGC 45133 .......... .......... .......... .......... .......... .......... 190 TAAAAAACAA TAATTTTATG CCTTAGTCAG GTCAAATTAT GAATCTTCGC TATTTTGTAA 45073 .......... .......... .......... .......... .......... .......... 190 GTTTGATGAA GTAAATCTAC GAAAGAAAAT AGTTTCTTTT GTCCAAAATT TTGCAGTGGT 45013 .......... .......... .......... .......... .......... .......... 190 TTCTAATGCT TAGGAGATAA TGTGTAATGA AGTTGAGAAT AATGAGGTTA TAGAATGGGT 44953 .......... .......... .......... .......... .......... .......... 190 TAGAAGGAGA AAATGAGAAT AAAAAAGAGC AAAGGTTCAT GAACAAGAGT TGGCGAATGA 44893 .......... .......... .......... .......... .......... .......... 190 CAATGTAGAT GATTGTTTAA CGTAATTGGT GTTTAGTTGA TTGCAGTAAT TTTATGATTA 44833 .......... .......... .......... .......... .......... .......... 190 ATTTCTTTTA TAGGTTTCGT TGGAGGCAGC AATATCGGCG AGAGTATCCA GAAAGTTTTC 44773 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTTTCGT TGGAGGCAGC AATATCGGCG AGAGTATCCA GAAAGTTTTC 237 TGAAGAAGTC TGATACCAGG TACATTGATG TTGCATTTTT TGAATTACAC CTTGCCATTG 44713 |||||||||| ||||||||| TGAAGAAGTC TGATACCAG. .......... .......... .......... .......... 256 AATACCTTTC CTTGTGAATT ATGTATCTTC ATTTATGATG AAATATTAAC TAATGAATGG 44653 .......... .......... .......... .......... .......... .......... 256 TATGAAGAGT GTGCATAGGA TGTATGAAAT AAGTTTAAAC ATAATAGACC AGTGAAATTG 44593 .......... .......... .......... .......... .......... .......... 256 ATTTAGGAGC TGAATAGCAC AAAGAGAGCA TAAAAGTCGA AAAGTGATGA AGATTTTCTG 44533 .......... .......... .......... .......... .......... .......... 256 AGCGTTTTTC TTTACTCTAG AAATAGAGTT TGTCTAAATT GCTTGTGTAG TATTATTGCC 44473 .......... .......... .......... .......... .......... .......... 256 TTTTCAAGCA TGTGTTCTTC CTTATTAGCC ATTAAATATG TGCATGGTTC TTCTTGAACA 44413 .......... .......... .......... .......... .......... .......... 256 TGCTATCACA TACTGTTCTG TCTAGTGTCA AATGCCACAT GGTCAGTGAC TCGGTTACAT 44353 .......... .......... .......... .......... .......... .......... 256 CTATATGTTA CATGCAGGGG AAAAGGTGAT TATCAAATTG ATTATAAACC AGCTCCTCGA 44293 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GGG AAAAGGTGAT TATCAAATTG ATTATAAACC AGCTCCTCGA 299 ATCTCAGAAG CAGATAAGAC TAATGATCAA AGGTACCAAA GCTTGGACTT CTAACTTTTG 44233 |||||||||| |||||||||| |||||||||| || ATCTCAGAAG CAGATAAGAC TAATGATCAA AG........ .......... .......... 331 TCAAATATTA TACAAGAATT TGAATATGGA CATTGCACTA GAAGATATTT TTCTTTCAAG 44173 .......... .......... .......... .......... .......... .......... 331 AGTTGCTTTA CTAAATTCAG CAGACTCGTA TTTCCTGACA ATAGATGATT ATTGACTTCT 44113 .......... .......... .......... .......... .......... .......... 331 AATTGTTTAC CATAACTAAA TTTTTGATGT TGAAATGCCT TAATATTGTC TCGAAGTAAT 44053 .......... .......... .......... .......... .......... .......... 331 TGATGTGTTA GTTACATGAG ATTTTTCAAT TGCGCATTGT GTAAGTACTT AAAATTAGGA 43993 .......... .......... .......... .......... .......... .......... 331 ATGCAGCGCT ACTGTTTTTT TTTTTACCTT TTATTTGCCT TCTTCACCCT CTCTACCCCA 43933 .......... .......... .......... .......... .......... .......... 331 CAAAATAAAG CTTGCGTCTT TTTTTTCAAC TCATCACTTG GTCAAAATTT GCTAAAAGGT 43873 .......... .......... .......... .......... .......... .......... 331 GCTAACCCTA CACAAAACCT TTTCATGTTA CTAATTATGA GATTTTATTG ATATGCATAA 43813 .......... .......... .......... .......... .......... .......... 331 GGTCATTACA GCGAGCACTA GACAAGAGAC TCTATCTTCT AGTCCATGGT ACCACACAAG 43753 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTCATTACA GCGAGCACTA GACAAGAGAC TCTATCTTCT AGTCCATGGT ACCACACAAG 390 GTAGTGGAAA GCCTGTCTGG CATTTCCCTG AAAAAGTTTA TGAGTCTGAA GAGAATTTGC 43693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTGGAAA GCCTGTCTGG CATTTCCCTG AAAAAGTTTA TGAGTCTGAA GAGAATTTGC 450 GCAAGGTAAA TAGTACTTAT CAGTCCATTT CTATGCTGAT TTCAGTAATT TGGGTTAGGA 43633 ||||| GCAAG..... .......... .......... .......... .......... .......... 455 AAATGAAAAT ATAAGTTGCA ACTATTTGCA GTGTGCTGAG TCTGCCTTAG AATCTTTCAT 43573 ||||||||| |||||||||| |||||||||| .......... .......... .......... .TGTGCTGAG TCTGCCTTAG AATCTTTCAT 484 TGGAGATCTT TCACATACAT ATTTTGTTGG AAATGCCCCT ATGGGTCATA TGGTCATGCA 43513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGATCTT TCACATACAT ATTTTGTTGG AAATGCCCCT ATGGGTCATA TGGTCATGCA 544 ACCCACTG 43505 |||||||| ACCCACTG 552 hqPGS_C04HBa0127E11.1-_SGN-E336151+ (45552 45363,44819 44754,44335 44261,43811 43688,43601 43505) ******************************************************************************** EST sequence 119 +strand 519 n (File: SGN-E247388+) 1 ATGCAGAGGT GCTGTTCGTC TGCTGGTCGA TCTGTGACAT CTAAACGATG GTTTTCTTCA 61 TCAAGCACTG ATAAAATTGT TGCTTCAGTG CTCTTCGAGA GATTACCAGT TATAGTTCCC 121 AAAATCGATC CTACTGTATA TGCTTTTCAA GAATTTTCGT TTCGTTGGAG GCAGCAGTAT 181 CGACGAGAGT ATCCAGAAAG TTTTCTGAAG AAGTCGGATA CTAGGGGAAA AGGTGATTAT 241 CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG ATAAGACTAA TGATCAAAGG 301 TCATTACAGC GAGCACTAGA CAGGAGACTC TATCTTCTAG TCCATGGTAC CACACATGGT 361 AGTGGAAAGC CCGTCTGGCA TTTTCCTGAA AAAGTTTATG AGTCTGAAGA GAACTTGCGC 421 AAGTGTGCTG AGTCTGCCCT AGAATCTTTC ATTGGAGATC TTTCACATAC ATATTTTGTT 481 GGAAACGCCC CTATGGGTCA TATGGTCATA CAACCCACT Predicted gene structure (within gDNA segment 47173 to 42806): Exon 1 45479 45363 ( 117 n); cDNA 42 158 ( 117 n); score: 0.897 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 159 224 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 225 299 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 300 423 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43506 ( 96 n); cDNA 424 519 ( 96 n); score: 0.969 MATCH C04HBa0127E11.1- SGN-E247388+ 0.948 478 0.921 C PGS_C04HBa0127E11.1-_SGN-E247388+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43506) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| || || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCGAGAG 101 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 158 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 158 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 158 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 158 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 158 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 158 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 158 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 158 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 158 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 158 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 218 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 224 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 224 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 224 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 224 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 224 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 224 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 224 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG 280 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 299 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 299 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 299 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 299 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 299 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 299 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 299 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 311 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGT CCATGGTACC ACACATGGTA GTGGAAAGCC 371 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| || ||||||| || CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG AACTTGCGCA AG........ 423 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 423 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT GCCTTAGAAT CTTTCATTGG AGATCTTTCA 43560 || |||||||||| ||| |||||| |||||||||| |||||||||| .......... ........TG TGCTGAGTCT GCCCTAGAAT CTTTCATTGG AGATCTTTCA 465 CATACATATT TTGTTGGAAA TGCCCCTATG GGTCATATGG TCATGCAACC CACT 43506 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||| CATACATATT TTGTTGGAAA CGCCCCTATG GGTCATATGG TCATACAACC CACT 519 hqPGS_C04HBa0127E11.1-_SGN-E247388+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43506) ******************************************************************************** EST sequence 110 +strand 513 n (File: SGN-E290360+) 1 TTAGGGTTTA TGAAAATGCA GAGGTGCTGT TCATCTGCGA TAGGTCAACG ATGGTTTTCT 61 TCATTCAACA ATGATAAAAT TGTGGCTTCA GTGCTCTTTG AAAGATTACC GGTAGCGGTA 121 CCCAAAATCG ATCCTACTGT ATATGCTTTT CAAGAATTTT CGTTTCGTTG GAGGCAGCAA 181 TATCGGCGAG AGTATCCAGA AAGTTTTCTG AAGAAGTCTG ATACCAACGG AAAAGGTGAT 241 TATCAAATTG ATTATAAACC AGCTCCTCGA ATCTCAGAAG CAGATAAGAC TAATGATCAA 301 AGGTCATTAC AGCGAGCACT AGACAAGAGA CTCTATCTTC TAGTCCATGG TACCACACAA 361 GGTAGTGGAA AGCCTGTCTG GCATTTCCCT GAAAAAGTTT ATGAGTCTGA AGAGAATTTG 421 CGCAAGTGTG CTGAGTCTGC CTTAGAATCT TTCATTGGAG ATCTTTCACA TACATATTTT 481 GTTGGAAATG CCCCTATGGG TCATATGGTC ATG Predicted gene structure (within gDNA segment 46123 to 42905): Exon 1 45523 45363 ( 161 n); cDNA 1 161 ( 161 n); score: 0.988 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 2 44819 44754 ( 66 n); cDNA 162 227 ( 66 n); score: 0.985 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.98), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 228 302 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 4 43811 43688 ( 124 n); cDNA 303 426 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 43601 43515 ( 87 n); cDNA 427 513 ( 87 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E290360+ 0.992 513 1.000 C PGS_C04HBa0127E11.1-_SGN-E290360+ (45523 45363,44819 44754,44335 44261,43811 43688,43601 43515) Alignment (genomic DNA sequence = upper lines): TTAGGGTTTA TGAAAATGCA GAGGTGCTGT TCATCTGCGA TAGGTAAACG ATGGTTTTCT 45464 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TTAGGGTTTA TGAAAATGCA GAGGTGCTGT TCATCTGCGA TAGGTCAACG ATGGTTTTCT 60 TCATTCAACA ATGATAAAAT TGTGGCTTCA GTGCTCTTTG AAAGATTACC GGTAGTGGTA 45404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TCATTCAACA ATGATAAAAT TGTGGCTTCA GTGCTCTTTG AAAGATTACC GGTAGCGGTA 120 CCCAAAATCG ATCCTACTGT ATATGCTTTT CAAGAATTTT CGTAAGTTTT TTCTTTTTTT 45344 |||||||||| |||||||||| |||||||||| |||||||||| | CCCAAAATCG ATCCTACTGT ATATGCTTTT CAAGAATTTT C......... .......... 161 CTGTTCAATT GTTGCACGAA ATCGAAGTGT AATCAATCCC TTTTGTAATC CAATTACAAT 45284 .......... .......... .......... .......... .......... .......... 161 GATTTACTTT TAGAGCGATA ATTGCTGGTT CGTATAATAG AATGATCAAA ACATTTACTA 45224 .......... .......... .......... .......... .......... .......... 161 GTGTTGATTT TTTTTTTCGC TTTTCAGAAA CTGTGCTGGT TAATTAGGGA TTAAGGGGTA 45164 .......... .......... .......... .......... .......... .......... 161 CTTTGATATG TTTGCTTGAG AAAAATAGTG CTAAAAAACA ATAATTTTAT GCCTTAGTCA 45104 .......... .......... .......... .......... .......... .......... 161 GGTCAAATTA TGAATCTTCG CTATTTTGTA AGTTTGATGA AGTAAATCTA CGAAAGAAAA 45044 .......... .......... .......... .......... .......... .......... 161 TAGTTTCTTT TGTCCAAAAT TTTGCAGTGG TTTCTAATGC TTAGGAGATA ATGTGTAATG 44984 .......... .......... .......... .......... .......... .......... 161 AAGTTGAGAA TAATGAGGTT ATAGAATGGG TTAGAAGGAG AAAATGAGAA TAAAAAAGAG 44924 .......... .......... .......... .......... .......... .......... 161 CAAAGGTTCA TGAACAAGAG TTGGCGAATG ACAATGTAGA TGATTGTTTA ACGTAATTGG 44864 .......... .......... .......... .......... .......... .......... 161 TGTTTAGTTG ATTGCAGTAA TTTTATGATT AATTTCTTTT ATAGGTTTCG TTGGAGGCAG 44804 |||||| |||||||||| .......... .......... .......... .......... ....GTTTCG TTGGAGGCAG 177 CAATATCGGC GAGAGTATCC AGAAAGTTTT CTGAAGAAGT CTGATACCAG GTACATTGAT 44744 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAATATCGGC GAGAGTATCC AGAAAGTTTT CTGAAGAAGT CTGATACCAA .......... 227 GTTGCATTTT TTGAATTACA CCTTGCCATT GAATACCTTT CCTTGTGAAT TATGTATCTT 44684 .......... .......... .......... .......... .......... .......... 227 CATTTATGAT GAAATATTAA CTAATGAATG GTATGAAGAG TGTGCATAGG ATGTATGAAA 44624 .......... .......... .......... .......... .......... .......... 227 TAAGTTTAAA CATAATAGAC CAGTGAAATT GATTTAGGAG CTGAATAGCA CAAAGAGAGC 44564 .......... .......... .......... .......... .......... .......... 227 ATAAAAGTCG AAAAGTGATG AAGATTTTCT GAGCGTTTTT CTTTACTCTA GAAATAGAGT 44504 .......... .......... .......... .......... .......... .......... 227 TTGTCTAAAT TGCTTGTGTA GTATTATTGC CTTTTCAAGC ATGTGTTCTT CCTTATTAGC 44444 .......... .......... .......... .......... .......... .......... 227 CATTAAATAT GTGCATGGTT CTTCTTGAAC ATGCTATCAC ATACTGTTCT GTCTAGTGTC 44384 .......... .......... .......... .......... .......... .......... 227 AAATGCCACA TGGTCAGTGA CTCGGTTACA TCTATATGTT ACATGCAGGG GAAAAGGTGA 44324 | |||||||||| .......... .......... .......... .......... ........CG GAAAAGGTGA 239 TTATCAAATT GATTATAAAC CAGCTCCTCG AATCTCAGAA GCAGATAAGA CTAATGATCA 44264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAAATT GATTATAAAC CAGCTCCTCG AATCTCAGAA GCAGATAAGA CTAATGATCA 299 AAGGTACCAA AGCTTGGACT TCTAACTTTT GTCAAATATT ATACAAGAAT TTGAATATGG 44204 ||| AAG....... .......... .......... .......... .......... .......... 302 ACATTGCACT AGAAGATATT TTTCTTTCAA GAGTTGCTTT ACTAAATTCA GCAGACTCGT 44144 .......... .......... .......... .......... .......... .......... 302 ATTTCCTGAC AATAGATGAT TATTGACTTC TAATTGTTTA CCATAACTAA ATTTTTGATG 44084 .......... .......... .......... .......... .......... .......... 302 TTGAAATGCC TTAATATTGT CTCGAAGTAA TTGATGTGTT AGTTACATGA GATTTTTCAA 44024 .......... .......... .......... .......... .......... .......... 302 TTGCGCATTG TGTAAGTACT TAAAATTAGG AATGCAGCGC TACTGTTTTT TTTTTTACCT 43964 .......... .......... .......... .......... .......... .......... 302 TTTATTTGCC TTCTTCACCC TCTCTACCCC ACAAAATAAA GCTTGCGTCT TTTTTTTCAA 43904 .......... .......... .......... .......... .......... .......... 302 CTCATCACTT GGTCAAAATT TGCTAAAAGG TGCTAACCCT ACACAAAACC TTTTCATGTT 43844 .......... .......... .......... .......... .......... .......... 302 ACTAATTATG AGATTTTATT GATATGCATA AGGTCATTAC AGCGAGCACT AGACAAGAGA 43784 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTCATTAC AGCGAGCACT AGACAAGAGA 330 CTCTATCTTC TAGTCCATGG TACCACACAA GGTAGTGGAA AGCCTGTCTG GCATTTCCCT 43724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTATCTTC TAGTCCATGG TACCACACAA GGTAGTGGAA AGCCTGTCTG GCATTTCCCT 390 GAAAAAGTTT ATGAGTCTGA AGAGAATTTG CGCAAGGTAA ATAGTACTTA TCAGTCCATT 43664 |||||||||| |||||||||| |||||||||| |||||| GAAAAAGTTT ATGAGTCTGA AGAGAATTTG CGCAAG.... .......... .......... 426 TCTATGCTGA TTTCAGTAAT TTGGGTTAGG AAAATGAAAA TATAAGTTGC AACTATTTGC 43604 .......... .......... .......... .......... .......... .......... 426 AGTGTGCTGA GTCTGCCTTA GAATCTTTCA TTGGAGATCT TTCACATACA TATTTTGTTG 43544 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TGTGCTGA GTCTGCCTTA GAATCTTTCA TTGGAGATCT TTCACATACA TATTTTGTTG 484 GAAATGCCCC TATGGGTCAT ATGGTCATG 43515 |||||||||| |||||||||| ||||||||| GAAATGCCCC TATGGGTCAT ATGGTCATG 513 hqPGS_C04HBa0127E11.1-_SGN-E290360+ (45523 45363,44819 44754,44335 44261,43811 43688,43601 43515) ******************************************************************************** EST sequence 138 +strand 477 n (File: SGN-E378266+) 1 ATGCAGAGGT GCTGTTCGTC TGCTGGTCGA TCTGTGACAT CTAAACGATG GTTTTCTTCA 61 TCAAGCACTG ATAAAATTGT TGCTTCAGTG CTCTTCGAGA GATTACCAGT TATAGTTCCC 121 AAAATCGATC CTACTGTATA TGCTTTTCAA GAATTTTCGT TTCGTTGGAG GCAGCAGTAT 181 CGACGAGAGT ATCCAGAAAG TTTTCTGAAG AAGTCGGATA CTAGGGGAAA AGGTGATTAT 241 CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG ATAAGACTAA TGATCAAAGG 301 TCATTACAGC GAGCACTAGA CAGGAGACTC TATCTTCTAG TCCATGGTAC CACACATGGT 361 AGTGGAAAGC CCGTCTGGCA TTTTCCTGAA AAAGTTTATG AGTCTGAAGA GAACTTGCGN 421 CAGTGTGCTG AGTCTGCCCT AGAATCTTTC ATTGGAGATC TTTCACATAC ATATTTT Predicted gene structure (within gDNA segment 47173 to 42938): Exon 1 45479 45363 ( 117 n); cDNA 42 158 ( 117 n); score: 0.897 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 159 224 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 225 299 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 300 423 ( 124 n); score: 0.944 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.92), Pa: 0.950 (s: 0.98) Exon 5 43601 43548 ( 54 n); cDNA 424 477 ( 54 n); score: 0.981 MATCH C04HBa0127E11.1- SGN-E378266+ 0.943 436 0.914 C PGS_C04HBa0127E11.1-_SGN-E378266+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43548) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| || || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCGAGAG 101 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 158 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 158 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 158 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 158 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 158 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 158 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 158 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 158 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 158 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 158 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCGACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 218 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 224 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 224 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 224 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 224 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 224 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 224 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 224 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCAG 280 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 299 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 299 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 299 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 299 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 299 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 299 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 299 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 311 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGT CCATGGTACC ACACATGGTA GTGGAAAGCC 371 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| || ||||| || CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG AACTTGCGNC AG........ 423 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 423 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT GCCTTAGAAT CTTTCATTGG AGATCTTTCA 43560 || |||||||||| ||| |||||| |||||||||| |||||||||| .......... ........TG TGCTGAGTCT GCCCTAGAAT CTTTCATTGG AGATCTTTCA 465 CATACATATT TT 43548 |||||||||| || CATACATATT TT 477 hqPGS_C04HBa0127E11.1-_SGN-E378266+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43548) ******************************************************************************** EST sequence 88 +strand 348 n (File: SGN-E267651+) 1 CAAAATCGAT CCTACTGTAT ATGCTTTTCA AGAATTTTCG TTTCGTTGGA GGCAGCAGTA 61 TCGACGAGAG TATCCAGAAA GTTTTCTGAA GAAGTCGGAT ACTAGGGGAA AAGGTGATTA 121 TCAAATTGAT TATAAACCAG CTCCGCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG 181 GTCATTACAG CGAGCACTAG ACAGGAGACT CTATCTTCTA GTCCATGGTA CCACACATGG 241 TAGTGGAAAG CCCGTCTGGC ATTTTCCTGA AAAAGGTTAT GAGTCTGAAG AGAACTTGCG 301 CAAGTGTGCT GAGTCTGCCC TAGAATCTTT CATTGGAGAT CTTTCACA Predicted gene structure (within gDNA segment 46001 to 42948): Exon 1 45401 45363 ( 39 n); cDNA 1 39 ( 39 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 40 105 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 106 180 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 181 304 ( 124 n); score: 0.952 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.94), Pa: 0.950 (s: 0.98) Exon 5 43601 43558 ( 44 n); cDNA 305 348 ( 44 n); score: 0.977 MATCH C04HBa0127E11.1- SGN-E267651+ 0.958 348 1.000 C PGS_C04HBa0127E11.1-_SGN-E267651+ (45401 45363,44819 44754,44335 44261,43811 43688,43601 43558) Alignment (genomic DNA sequence = upper lines): CAAAATCGAT CCTACTGTAT ATGCTTTTCA AGAATTTTCG TAAGTTTTTT CTTTTTTTCT 45342 |||||||||| |||||||||| |||||||||| ||||||||| CAAAATCGAT CCTACTGTAT ATGCTTTTCA AGAATTTTC. .......... .......... 39 GTTCAATTGT TGCACGAAAT CGAAGTGTAA TCAATCCCTT TTGTAATCCA ATTACAATGA 45282 .......... .......... .......... .......... .......... .......... 39 TTTACTTTTA GAGCGATAAT TGCTGGTTCG TATAATAGAA TGATCAAAAC ATTTACTAGT 45222 .......... .......... .......... .......... .......... .......... 39 GTTGATTTTT TTTTTCGCTT TTCAGAAACT GTGCTGGTTA ATTAGGGATT AAGGGGTACT 45162 .......... .......... .......... .......... .......... .......... 39 TTGATATGTT TGCTTGAGAA AAATAGTGCT AAAAAACAAT AATTTTATGC CTTAGTCAGG 45102 .......... .......... .......... .......... .......... .......... 39 TCAAATTATG AATCTTCGCT ATTTTGTAAG TTTGATGAAG TAAATCTACG AAAGAAAATA 45042 .......... .......... .......... .......... .......... .......... 39 GTTTCTTTTG TCCAAAATTT TGCAGTGGTT TCTAATGCTT AGGAGATAAT GTGTAATGAA 44982 .......... .......... .......... .......... .......... .......... 39 GTTGAGAATA ATGAGGTTAT AGAATGGGTT AGAAGGAGAA AATGAGAATA AAAAAGAGCA 44922 .......... .......... .......... .......... .......... .......... 39 AAGGTTCATG AACAAGAGTT GGCGAATGAC AATGTAGATG ATTGTTTAAC GTAATTGGTG 44862 .......... .......... .......... .......... .......... .......... 39 TTTAGTTGAT TGCAGTAATT TTATGATTAA TTTCTTTTAT AGGTTTCGTT GGAGGCAGCA 44802 |||||||| |||||||||| .......... .......... .......... .......... ..GTTTCGTT GGAGGCAGCA 57 ATATCGGCGA GAGTATCCAG AAAGTTTTCT GAAGAAGTCT GATACCAGGT ACATTGATGT 44742 ||||| ||| |||||||||| |||||||||| ||||||||| ||||| || GTATCGACGA GAGTATCCAG AAAGTTTTCT GAAGAAGTCG GATACTAG.. .......... 105 TGCATTTTTT GAATTACACC TTGCCATTGA ATACCTTTCC TTGTGAATTA TGTATCTTCA 44682 .......... .......... .......... .......... .......... .......... 105 TTTATGATGA AATATTAACT AATGAATGGT ATGAAGAGTG TGCATAGGAT GTATGAAATA 44622 .......... .......... .......... .......... .......... .......... 105 AGTTTAAACA TAATAGACCA GTGAAATTGA TTTAGGAGCT GAATAGCACA AAGAGAGCAT 44562 .......... .......... .......... .......... .......... .......... 105 AAAAGTCGAA AAGTGATGAA GATTTTCTGA GCGTTTTTCT TTACTCTAGA AATAGAGTTT 44502 .......... .......... .......... .......... .......... .......... 105 GTCTAAATTG CTTGTGTAGT ATTATTGCCT TTTCAAGCAT GTGTTCTTCC TTATTAGCCA 44442 .......... .......... .......... .......... .......... .......... 105 TTAAATATGT GCATGGTTCT TCTTGAACAT GCTATCACAT ACTGTTCTGT CTAGTGTCAA 44382 .......... .......... .......... .......... .......... .......... 105 ATGCCACATG GTCAGTGACT CGGTTACATC TATATGTTAC ATGCAGGGGA AAAGGTGATT 44322 |||| |||||||||| .......... .......... .......... .......... ......GGGA AAAGGTGATT 119 ATCAAATTGA TTATAAACCA GCTCCTCGAA TCTCAGAAGC AGATAAGACT AATGATCAAA 44262 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ATCAAATTGA TTATAAACCA GCTCCGCGAA TCTCAGAAGC AGATAAGACT AATGATCAAA 179 GGTACCAAAG CTTGGACTTC TAACTTTTGT CAAATATTAT ACAAGAATTT GAATATGGAC 44202 | G......... .......... .......... .......... .......... .......... 180 ATTGCACTAG AAGATATTTT TCTTTCAAGA GTTGCTTTAC TAAATTCAGC AGACTCGTAT 44142 .......... .......... .......... .......... .......... .......... 180 TTCCTGACAA TAGATGATTA TTGACTTCTA ATTGTTTACC ATAACTAAAT TTTTGATGTT 44082 .......... .......... .......... .......... .......... .......... 180 GAAATGCCTT AATATTGTCT CGAAGTAATT GATGTGTTAG TTACATGAGA TTTTTCAATT 44022 .......... .......... .......... .......... .......... .......... 180 GCGCATTGTG TAAGTACTTA AAATTAGGAA TGCAGCGCTA CTGTTTTTTT TTTTACCTTT 43962 .......... .......... .......... .......... .......... .......... 180 TATTTGCCTT CTTCACCCTC TCTACCCCAC AAAATAAAGC TTGCGTCTTT TTTTTCAACT 43902 .......... .......... .......... .......... .......... .......... 180 CATCACTTGG TCAAAATTTG CTAAAAGGTG CTAACCCTAC ACAAAACCTT TTCATGTTAC 43842 .......... .......... .......... .......... .......... .......... 180 TAATTATGAG ATTTTATTGA TATGCATAAG GTCATTACAG CGAGCACTAG ACAAGAGACT 43782 |||||||||| |||||||||| ||| |||||| .......... .......... .......... GTCATTACAG CGAGCACTAG ACAGGAGACT 210 CTATCTTCTA GTCCATGGTA CCACACAAGG TAGTGGAAAG CCTGTCTGGC ATTTCCCTGA 43722 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| |||| ||||| CTATCTTCTA GTCCATGGTA CCACACATGG TAGTGGAAAG CCCGTCTGGC ATTTTCCTGA 270 AAAAGTTTAT GAGTCTGAAG AGAATTTGCG CAAGGTAAAT AGTACTTATC AGTCCATTTC 43662 ||||| |||| |||||||||| |||| ||||| |||| AAAAGGTTAT GAGTCTGAAG AGAACTTGCG CAAG...... .......... .......... 304 TATGCTGATT TCAGTAATTT GGGTTAGGAA AATGAAAATA TAAGTTGCAA CTATTTGCAG 43602 .......... .......... .......... .......... .......... .......... 304 TGTGCTGAGT CTGCCTTAGA ATCTTTCATT GGAGATCTTT CACA 43558 |||||||||| ||||| |||| |||||||||| |||||||||| |||| TGTGCTGAGT CTGCCCTAGA ATCTTTCATT GGAGATCTTT CACA 348 hqPGS_C04HBa0127E11.1-_SGN-E267651+ (45401 45363,44819 44754,44335 44261,43811 43688,43601 43558) ******************************************************************************** EST sequence 126 +strand 469 n (File: SGN-E287107+) 1 AAATTTTAAT TTGGGTTTTT AGGGTTTGTG AAAATGCAGA GGTGCTGTTC GTCTGCTGGT 61 CGATCTGTGA CATCTAAACG ATGGTTTTCT TCATCAAGCA CTGATAAAAT TGTTGCTTCA 121 GTGCTCTTCC AGAGATTACC AGTTATAGTT CCCAAAATCG ATCCTACTGT ATATGCTTTT 181 CAAGAATTTT CGTTTCGTTG GAGGCAGCAG TATCCACGAG AGTATCCAGA AAGTTTTCTG 241 AAGAAGTCGG ATACTAGGGG AAAAGGTGAT TATCAAATTG ATTATAAACC AGCTCCGCGA 301 ATCTCAGAAG CCGATAAGAC TAATGATCAA AGGTCATTAC AGCGAGCACT AGACAGGAGA 361 CTCTATCTTC TAGGCCATGG TACCACACAT GGTAGTGGAA AGCCCGTCTG GCATTTTCCT 421 GAAAAAGTTT ATGAGTCTGA AGAGAACTTG CGCAAGTGTG CTGAGTCTG Predicted gene structure (within gDNA segment 46204 to 42201): Exon 1 45479 45363 ( 117 n); cDNA 75 191 ( 117 n); score: 0.889 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.94) Exon 2 44819 44754 ( 66 n); cDNA 192 257 ( 66 n); score: 0.924 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.90), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 258 332 ( 75 n); score: 0.973 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.96), Pa: 0.620 (s: 0.96) Exon 4 43811 43688 ( 124 n); cDNA 333 456 ( 124 n); score: 0.952 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0) Exon 5 43601 43589 ( 13 n); cDNA 457 469 ( 13 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E287107+ 0.932 395 0.842 C PGS_C04HBa0127E11.1-_SGN-E287107+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43589) Alignment (genomic DNA sequence = upper lines): TAAACGATGG TTTTCTTCAT TCAACAATGA TAAAATTGTG GCTTCAGTGC TCTTTGAAAG 45420 |||||||||| |||||||||| | || ||| ||||||||| |||||||||| |||| | || TAAACGATGG TTTTCTTCAT CAAGCACTGA TAAAATTGTT GCTTCAGTGC TCTTCCAGAG 134 ATTACCGGTA GTGGTACCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTCGTA 45360 |||||| || | || |||| |||||||||| |||||||||| |||||||||| ||||||| ATTACCAGTT ATAGTTCCCA AAATCGATCC TACTGTATAT GCTTTTCAAG AATTTTC... 191 AGTTTTTTCT TTTTTTCTGT TCAATTGTTG CACGAAATCG AAGTGTAATC AATCCCTTTT 45300 .......... .......... .......... .......... .......... .......... 191 GTAATCCAAT TACAATGATT TACTTTTAGA GCGATAATTG CTGGTTCGTA TAATAGAATG 45240 .......... .......... .......... .......... .......... .......... 191 ATCAAAACAT TTACTAGTGT TGATTTTTTT TTTCGCTTTT CAGAAACTGT GCTGGTTAAT 45180 .......... .......... .......... .......... .......... .......... 191 TAGGGATTAA GGGGTACTTT GATATGTTTG CTTGAGAAAA ATAGTGCTAA AAAACAATAA 45120 .......... .......... .......... .......... .......... .......... 191 TTTTATGCCT TAGTCAGGTC AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA 45060 .......... .......... .......... .......... .......... .......... 191 AATCTACGAA AGAAAATAGT TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG 45000 .......... .......... .......... .......... .......... .......... 191 GAGATAATGT GTAATGAAGT TGAGAATAAT GAGGTTATAG AATGGGTTAG AAGGAGAAAA 44940 .......... .......... .......... .......... .......... .......... 191 TGAGAATAAA AAAGAGCAAA GGTTCATGAA CAAGAGTTGG CGAATGACAA TGTAGATGAT 44880 .......... .......... .......... .......... .......... .......... 191 TGTTTAACGT AATTGGTGTT TAGTTGATTG CAGTAATTTT ATGATTAATT TCTTTTATAG 44820 .......... .......... .......... .......... .......... .......... 191 GTTTCGTTGG AGGCAGCAAT ATCGGCGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCTGA 44760 |||||||||| |||||||| | ||| ||||| |||||||||| |||||||||| ||||||| || GTTTCGTTGG AGGCAGCAGT ATCCACGAGA GTATCCAGAA AGTTTTCTGA AGAAGTCGGA 251 TACCAGGTAC ATTGATGTTG CATTTTTTGA ATTACACCTT GCCATTGAAT ACCTTTCCTT 44700 ||| || TACTAG.... .......... .......... .......... .......... .......... 257 GTGAATTATG TATCTTCATT TATGATGAAA TATTAACTAA TGAATGGTAT GAAGAGTGTG 44640 .......... .......... .......... .......... .......... .......... 257 CATAGGATGT ATGAAATAAG TTTAAACATA ATAGACCAGT GAAATTGATT TAGGAGCTGA 44580 .......... .......... .......... .......... .......... .......... 257 ATAGCACAAA GAGAGCATAA AAGTCGAAAA GTGATGAAGA TTTTCTGAGC GTTTTTCTTT 44520 .......... .......... .......... .......... .......... .......... 257 ACTCTAGAAA TAGAGTTTGT CTAAATTGCT TGTGTAGTAT TATTGCCTTT TCAAGCATGT 44460 .......... .......... .......... .......... .......... .......... 257 GTTCTTCCTT ATTAGCCATT AAATATGTGC ATGGTTCTTC TTGAACATGC TATCACATAC 44400 .......... .......... .......... .......... .......... .......... 257 TGTTCTGTCT AGTGTCAAAT GCCACATGGT CAGTGACTCG GTTACATCTA TATGTTACAT 44340 .......... .......... .......... .......... .......... .......... 257 GCAGGGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCTCGAATC TCAGAAGCAG 44280 |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| | ....GGGAAA AGGTGATTAT CAAATTGATT ATAAACCAGC TCCGCGAATC TCAGAAGCCG 313 ATAAGACTAA TGATCAAAGG TACCAAAGCT TGGACTTCTA ACTTTTGTCA AATATTATAC 44220 |||||||||| ||||||||| ATAAGACTAA TGATCAAAG. .......... .......... .......... .......... 332 AAGAATTTGA ATATGGACAT TGCACTAGAA GATATTTTTC TTTCAAGAGT TGCTTTACTA 44160 .......... .......... .......... .......... .......... .......... 332 AATTCAGCAG ACTCGTATTT CCTGACAATA GATGATTATT GACTTCTAAT TGTTTACCAT 44100 .......... .......... .......... .......... .......... .......... 332 AACTAAATTT TTGATGTTGA AATGCCTTAA TATTGTCTCG AAGTAATTGA TGTGTTAGTT 44040 .......... .......... .......... .......... .......... .......... 332 ACATGAGATT TTTCAATTGC GCATTGTGTA AGTACTTAAA ATTAGGAATG CAGCGCTACT 43980 .......... .......... .......... .......... .......... .......... 332 GTTTTTTTTT TTACCTTTTA TTTGCCTTCT TCACCCTCTC TACCCCACAA AATAAAGCTT 43920 .......... .......... .......... .......... .......... .......... 332 GCGTCTTTTT TTTCAACTCA TCACTTGGTC AAAATTTGCT AAAAGGTGCT AACCCTACAC 43860 .......... .......... .......... .......... .......... .......... 332 AAAACCTTTT CATGTTACTA ATTATGAGAT TTTATTGATA TGCATAAGGT CATTACAGCG 43800 || |||||||||| .......... .......... .......... .......... ........GT CATTACAGCG 344 AGCACTAGAC AAGAGACTCT ATCTTCTAGT CCATGGTACC ACACAAGGTA GTGGAAAGCC 43740 |||||||||| | |||||||| ||||||||| |||||||||| ||||| |||| |||||||||| AGCACTAGAC AGGAGACTCT ATCTTCTAGG CCATGGTACC ACACATGGTA GTGGAAAGCC 404 TGTCTGGCAT TTCCCTGAAA AAGTTTATGA GTCTGAAGAG AATTTGCGCA AGGTAAATAG 43680 ||||||||| || ||||||| |||||||||| |||||||||| || ||||||| || CGTCTGGCAT TTTCCTGAAA AAGTTTATGA GTCTGAAGAG AACTTGCGCA AG........ 456 TACTTATCAG TCCATTTCTA TGCTGATTTC AGTAATTTGG GTTAGGAAAA TGAAAATATA 43620 .......... .......... .......... .......... .......... .......... 456 AGTTGCAACT ATTTGCAGTG TGCTGAGTCT G 43589 || |||||||||| | .......... ........TG TGCTGAGTCT G 469 hqPGS_C04HBa0127E11.1-_SGN-E287107+ (45479 45363,44819 44754,44335 44261,43811 43688,43601 43589) ******************************************************************************** EST sequence 100 +strand 444 n (File: SGN-E288262+) 1 AAATTTGATA TTAGAAAGTG TGATGATTTT GTCTGGGTGA CAAAAGATGA ATTGTTGGAA 61 TACTTTCCTG AGCAAGCTGA ATTCCTGAAC AAGATGATCA TCAGCTGATG TTTGTTTCTG 121 CTCAAACTTC ATGCTTGGTA GGATAGCTAG CGGTTTGAGT ATATCCTGAT CTGAAAAATC 181 CACTTCTTTC CGCAAATGTA ATGGCTTTGA TTACTGGAGA CCAATTTTAT GTACTGGCAG 241 CAAGAAGACC TGACTGCAAT TTGCCAGTGT GCCATTCATC AAGTTTTGTA GAATTTTGAA 301 CATAGGGATA CCTTAAGTTG TGATGGCCTT CTATCTCAGC TATCACCATT CCTATATGGG 361 AGAAGCTATG CTCAGAACTC TGAACTGGTC ATGCAATTTA GTATGAATAT ACTTGTAGAT 421 GCATGATTTC ATCTCGTGTC ATGA Predicted gene structure (within gDNA segment 44051 to 39419): Exon 1 43289 42872 ( 418 n); cDNA 1 442 ( 442 n); score: 0.724 MATCH C04HBa0127E11.1- SGN-E288262+ 0.724 418 0.941 C PGS_C04HBa0127E11.1-_SGN-E288262+ (43289 42872) Alignment (genomic DNA sequence = upper lines): AAATTTGATA TTAGGAAATG TGATGATTTT GTCTGGGTGA CCAAAGATGA ACTGTTGGAA 43230 |||||||||| |||| || || |||||||||| |||||||||| | |||||||| | |||||||| AAATTTGATA TTAGAAAGTG TGATGATTTT GTCTGGGTGA CAAAAGATGA ATTGTTGGAA 60 TACTTTCCCG AGCAAGCTGA ATTCCTGAAC AAGATGATCA TCAGCTGACG TTAGTTTCTG 43170 |||||||| | |||||||||| |||||||||| |||||||||| |||||||| | || ||||||| TACTTTCCTG AGCAAGCTGA ATTCCTGAAC AAGATGATCA TCAGCTGATG TTTGTTTCTG 120 CTCAAACTTC AGGCTTCGTA GGATAGC--G -GAAAT-AGT -T-T--TGAT CTGAAAAATC 43118 |||||||||| | |||| ||| ||||||| | | | ||| | | |||| |||||||||| CTCAAACTTC ATGCTTGGTA GGATAGCTAG CGGTTTGAGT ATATCCTGAT CTGAAAAATC 180 CATTTCTTCC CGCAAATGCA ATGGGCTTGG ACTGCTGGAG ACTGA-TTT- T-TA-TGTC- 43063 || ||||| | |||||||| | || ||||| | | | |||||| || | ||| | || || | CACTTCTTTC CGCAAATGTA AT-GGCTTTG ATTACTGGAG ACCAATTTTA TGTACTGGCA 239 TCGA-CAG-T CTGACT---A ---G-CA--- TGCCATTCAT CAAGTCCTGT AGAATTTTGA 43015 | | || |||||| | | || |||||||||| ||||| ||| |||||||||| GCAAGAAGAC CTGACTGCAA TTTGCCAGTG TGCCATTCAT CAAGTTTTGT AGAATTTTGA 299 ACATA-GGAT ACC-TAAATT ATGATAGCCT TCTGCCTCAG CTATCACCAA TCCTCTTTGT 42957 ||||| |||| ||| ||| || |||| |||| ||| ||||| ||||||||| |||| | || ACATAGGGAT ACCTTAAGTT GTGATGGCCT TCTATCTCAG CTATCACCAT TCCTATATGG 359 GAGAAGCTAT GCTAAAAACT CTGAAATAGT CATGAATTTT AGTATGAATA TGCTTTTGTA 42897 |||||||||| ||| | |||| ||||| | || |||| | ||| |||||||||| | | ||||| GAGAAGCTAT GCTCAGAACT CTGAACTGGT CATGCAATTT AGTATGAATA TAC--TTGTA 417 GATGCACGAT TTCATCTCGC GTCAT 42872 |||||| ||| ||||||||| ||||| GATGCATGAT TTCATCTCGT GTCAT 442 hqPGS_C04HBa0127E11.1-_SGN-E288262+ (43289 42872) ******************************************************************************** EST sequence 45 -strand 315 n (File: SGN-E234972-) 1 TGATCATCAG CTGACGTTAG TTTCTGCTCA AACTTCAGGC TTCGTAGGAT AGCGGAAATA 61 GTTTTGATCT GAAAAATCCA TTTCTTCCCG CAAATGCAAT GGGCTTGGAC TGCTGGAGAC 121 TGATTTTTAT GTCTCGACAG TCTGACTAGC ATGCCATTCA TCAAGTCCTG TAGAATTTTG 181 AACATAGGAT ACCTAAATTA TGATAGCCTT CTGCCTCAGC TATCACCAAT CCTCTTTGTG 241 AGAAGCTATG CTAAAAACTC TGAAATAGTC ATGAATTTTA GTATGAATAT GCTTTTGTAA 301 AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 43805 to 42137): Exon 1 43195 42910 ( 286 n); cDNA 1 286 ( 286 n); score: 1.000 PPA cDNA 299 315 MATCH C04HBa0127E11.1- SGN-E234972- 1.000 286 0.908 C PGS_C04HBa0127E11.1-_SGN-E234972- (43195 42910) Alignment (genomic DNA sequence = upper lines): TGATCATCAG CTGACGTTAG TTTCTGCTCA AACTTCAGGC TTCGTAGGAT AGCGGAAATA 43136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCATCAG CTGACGTTAG TTTCTGCTCA AACTTCAGGC TTCGTAGGAT AGCGGAAATA 60 GTTTTGATCT GAAAAATCCA TTTCTTCCCG CAAATGCAAT GGGCTTGGAC TGCTGGAGAC 43076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGATCT GAAAAATCCA TTTCTTCCCG CAAATGCAAT GGGCTTGGAC TGCTGGAGAC 120 TGATTTTTAT GTCTCGACAG TCTGACTAGC ATGCCATTCA TCAAGTCCTG TAGAATTTTG 43016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTTTTAT GTCTCGACAG TCTGACTAGC ATGCCATTCA TCAAGTCCTG TAGAATTTTG 180 AACATAGGAT ACCTAAATTA TGATAGCCTT CTGCCTCAGC TATCACCAAT CCTCTTTGTG 42956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATAGGAT ACCTAAATTA TGATAGCCTT CTGCCTCAGC TATCACCAAT CCTCTTTGTG 240 AGAAGCTATG CTAAAAACTC TGAAATAGTC ATGAATTTTA GTATGA 42910 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGAAGCTATG CTAAAAACTC TGAAATAGTC ATGAATTTTA GTATGA 286 hqPGS_C04HBa0127E11.1-_SGN-E234972- (43195 42910) ******************************************************************************** EST sequence 44 -strand 178 n (File: SGN-E234684-) 1 AGTCTGACTA GGCATGCCAT TCATCAAGTC CTGTAGAATT TTGAACATAG GATACCTAAA 61 TTATGATAGC CTTCTGCCTC AGCTATCACC AATCCTCTTT GTGAGAAGCT ATGCTAAAAA 121 CTCTGAAATA GTCATGAATT TTAGTATGAA TATGCTTTTG TAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 43767 to 42137): Exon 1 43057 42910 ( 148 n); cDNA 1 149 ( 149 n); score: 0.983 PPA cDNA 162 178 MATCH C04HBa0127E11.1- SGN-E234684- 0.983 148 0.831 C PGS_C04HBa0127E11.1-_SGN-E234684- (43057 42910) Alignment (genomic DNA sequence = upper lines): AGTCTGACTA -GCATGCCAT TCATCAAGTC CTGTAGAATT TTGAACATAG GATACCTAAA 42999 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTGACTA GGCATGCCAT TCATCAAGTC CTGTAGAATT TTGAACATAG GATACCTAAA 60 TTATGATAGC CTTCTGCCTC AGCTATCACC AATCCTCTTT GTGAGAAGCT ATGCTAAAAA 42939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGATAGC CTTCTGCCTC AGCTATCACC AATCCTCTTT GTGAGAAGCT ATGCTAAAAA 120 CTCTGAAATA GTCATGAATT TTAGTATGA 42910 |||||||||| |||||||||| ||||||||| CTCTGAAATA GTCATGAATT TTAGTATGA 149 hqPGS_C04HBa0127E11.1-_SGN-E234684- (43057 42910) ******************************************************************************** EST sequence 145 +strand 529 n (File: SGN-E546270+) 1 GAAAATGCAG AGGTGCTGTT CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA 61 TGATAAAATT GTCGCTTCAG TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA 121 TCCTACTGTA TATGCTTTTC AAGAATTTTC GTAAGTTTTT CTTTTTTTTC TGTTCAATTG 181 TTGCACGAAA TCGATCCTTT TTGTAATCCA ATTACAATGA TTTACTTTTA GAGCGATAAA 241 TTCTGGTTCA TATAATAGAA TGATCAAAAC ATTTACTAGT GTTGATTTTT TTTTTCGCTT 301 TCTAAAAACT GTGATGGTTA ATTAGGGATT AAGGGGTACT CTGATATGTT TGCTTGCGAA 361 AAATAGTACT CAAAAACAAT AATTATGCCT CAATTGCATT AGTCAGGTCA AATTATGAAT 421 CTTCACTATT TTGTAAGTTT GATGAAGTAA ATCTACAAAA GAAAATAGTT TCTTTTGTCC 481 AAAATTTTGC AGTGGTTTCT AATGCTTAGG AGATAATGTG TAATGAAGT Predicted gene structure (within gDNA segment 46112 to 44370): Exon 1 45512 44980 ( 533 n); cDNA 1 529 ( 529 n); score: 0.913 MATCH C04HBa0127E11.1- SGN-E546270+ 0.913 533 1.008 C PGS_C04HBa0127E11.1-_SGN-E546270+ (45512 44980) Alignment (genomic DNA sequence = upper lines): GAAAATGCAG AGGTGCTGTT CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA 45453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATGCAG AGGTGCTGTT CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA 60 TGATAAAATT GTGGCTTCAG TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA 45393 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAAAATT GTCGCTTCAG TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA 120 TCCTACTGTA TATGCTTTTC AAGAATTTTC GTAAGTTTTT TCTTTTTTTC TGTTCAATTG 45333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| TCCTACTGTA TATGCTTTTC AAGAATTTTC GTAAGTTTTT CTTTTTTTTC TGTTCAATTG 180 TTGCACGAAA TCGAAGTGTA ATCAATCCCT TTTGTAATCC AATTACAATG ATTTACTTTT 45273 |||||||||| || | |||| | |||||||||| |||||||||| |||||||||| TTGCACGAAA TC-----G-- ----ATCCTT TTTGTAATCC AATTACAATG ATTTACTTTT 229 AGAGCGATAA TTGCTGGTTC GTATAATAGA ATGATCAAAA CATTTACTAG TGTTGATTTT 45213 |||||||||| | ||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGAGCGATAA ATTCTGGTTC ATATAATAGA ATGATCAAAA CATTTACTAG TGTTGATTTT 289 TTTTTTCGCT TTTCAGAAAC TGTGCTGGTT AATTAGGGAT TAAGGGGTAC TTTGATATGT 45153 |||||||||| || | |||| |||| ||||| |||||||||| |||||||||| | |||||||| TTTTTTCGCT TTCTAAAAAC TGTGATGGTT AATTAGGGAT TAAGGGGTAC TCTGATATGT 349 TTGCTTGAGA AAAATAGTGC TAAAAAACAA TAATT-T--- T-A--TGCCT TAGTCAGGTC 45100 ||||||| || |||||||| | | |||||||| ||||| | | | ||| | |||||||||| TTGCTTGCGA AAAATAGTAC TCAAAAACAA TAATTATGCC TCAATTGCAT TAGTCAGGTC 409 AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA AATCTACGAA AGAAAATAGT 45040 |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| || |||||||||| AAATTATGAA TCTTCACTAT TTTGTAAGTT TGATGAAGTA AATCTACAAA AGAAAATAGT 469 TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG GAGATAATGT GTAATGAAGT 44980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG GAGATAATGT GTAATGAAGT 529 hqPGS_C04HBa0127E11.1-_SGN-E546270+ (45512 44980) ******************************************************************************** EST sequence 29 +strand 586 n (File: SGN-E308984+) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 301 AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 421 GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 481 TGGAAAAGTG TAGAGGCTTA CCTCTTGCGA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGGGCT AAACGAATGG AAAAAGGTGA AAGATCACCT TTGGAA Predicted gene structure (within gDNA segment 47189 to 48984): Exon 1 47789 48374 ( 586 n); cDNA 1 586 ( 586 n); score: 0.930 MATCH C04HBa0127E11.1+ SGN-E308984+ 0.930 586 1.000 C PGS_C04HBa0127E11.1+_SGN-E308984+ (47789 48374) Alignment (genomic DNA sequence = upper lines): GCAAGACCAC TCTTGCAAGA AACCTCTACA AAAATCCTAA TATATCCTCT CGCTTCCCTA 47848 |||||||||| |||||||||| |||||||||| || |||| |||| | | || |||| GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 60 CACACGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 47908 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 120 TAAAATCCAT CCAAGGTCGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 47968 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 180 GAGATCTAGA AAACCACCTT CGTGATCTAT TGAAAGAACG CAAATACCTT GTGGTGGTTG 48028 |||||||||| ||| |||||| ||||||||| |||||||||| |||||||||| || ||||||| GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 240 ATGATGTCTG GCAAAGAGAA GCATGGGAGA GTTTGAAAAG AGCATTCCCG GATGACAAGA 48088 ||||| | || ||| |||||| |||||||| | |||||||||| |||||||||| |||| | ||| ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 300 ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 48148 | |||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||| ||||| AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 360 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 48208 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||| | GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 420 GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 48268 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 480 TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 48328 |||||||||| |||||| ||| |||||||| | |||||||||| |||||||||| |||||||||| TGGAAAAGTG TAGAGGCTTA CCTCTTGCGA TTGTTGTATT GAGCGGACTA CTTTCGCATA 540 AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAA 48374 |||||| || | | |||||| ||||||||| |||||||||| |||||| AAAAGGGGCT AAACGAATGG AAAAAGGTGA AAGATCACCT TTGGAA 586 hqPGS_C04HBa0127E11.1+_SGN-E308984+ (47789 48374) ******************************************************************************** EST sequence 95 -strand 641 n (File: SGN-E255576-) 1 CAAGAGTACA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGGTCGCACC 61 ATGGGAACTC TAGGATTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 121 GATCTATTGA AAGAACGCAA ATACCTTGTG GTGGTTGATG ATGTCTGGCA AAGAGAAGCA 181 TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GACAAGAATG GCAGCAGAGT CATTATTACC 241 ACGCGCAAAG AGGATATCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 301 TTCCTAAGTC AAGAAGAAAG TTGGGATCTC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 361 ATGGTTGCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAGTGTAG AGGTTTACCT 421 CTTGCAATTG TTGTATTGAG CGGACTACTT TCGCATAAAA AGGATCTAGA TGAATGGCAA 481 AAGGTGAAAG ATCACCTTTG GAAGAGCATT AAAGAAGATA AATCTGTTGA AATCTCCAAC 541 ATACTATCAC TAAGCTACAA TGATTTGTCA ATTGAGCTCA AGCAGTGTTT TCTCTACTTT 601 GGTATGTTTC CAGAAGATCG AGTGGTCAAG GCTGAAAACA C Predicted gene structure (within gDNA segment 47262 to 49112): Exon 1 47872 48512 ( 641 n); cDNA 1 641 ( 641 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-E255576- 1.000 641 1.000 C PGS_C04HBa0127E11.1+_SGN-E255576- (47872 48512) Alignment (genomic DNA sequence = upper lines): CAAGAGTACA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGGTCGCACC 47931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGTACA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA AGGTCGCACC 60 ATGGGAACTC TAGGATTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 47991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGAACTC TAGGATTGTT GGAAAAGATG GATGAAAGAG ATCTAGAAAA CCACCTTCGT 120 GATCTATTGA AAGAACGCAA ATACCTTGTG GTGGTTGATG ATGTCTGGCA AAGAGAAGCA 48051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTATTGA AAGAACGCAA ATACCTTGTG GTGGTTGATG ATGTCTGGCA AAGAGAAGCA 180 TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GACAAGAATG GCAGCAGAGT CATTATTACC 48111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAGAGTT TGAAAAGAGC ATTCCCGGAT GACAAGAATG GCAGCAGAGT CATTATTACC 240 ACGCGCAAAG AGGATATCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 48171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCGCAAAG AGGATATCGC TGAAAGAGCA GCCGACAGAG GTTTTGTTCA TAAACTTCGT 300 TTCCTAAGTC AAGAAGAAAG TTGGGATCTC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 48231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTAAGTC AAGAAGAAAG TTGGGATCTC TTTCTTAGGA AACTACTTGA TGTTCGAGCA 360 ATGGTTGCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAGTGTAG AGGTTTACCT 48291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTTGCAG AAATGGAAAG TCTAGCTAAG GATATGGTGG AAAAGTGTAG AGGTTTACCT 420 CTTGCAATTG TTGTATTGAG CGGACTACTT TCGCATAAAA AGGATCTAGA TGAATGGCAA 48351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCAATTG TTGTATTGAG CGGACTACTT TCGCATAAAA AGGATCTAGA TGAATGGCAA 480 AAGGTGAAAG ATCACCTTTG GAAGAGCATT AAAGAAGATA AATCTGTTGA AATCTCCAAC 48411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTGAAAG ATCACCTTTG GAAGAGCATT AAAGAAGATA AATCTGTTGA AATCTCCAAC 540 ATACTATCAC TAAGCTACAA TGATTTGTCA ATTGAGCTCA AGCAGTGTTT TCTCTACTTT 48471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTATCAC TAAGCTACAA TGATTTGTCA ATTGAGCTCA AGCAGTGTTT TCTCTACTTT 600 GGTATGTTTC CAGAAGATCG AGTGGTCAAG GCTGAAAACA C 48512 |||||||||| |||||||||| |||||||||| |||||||||| | GGTATGTTTC CAGAAGATCG AGTGGTCAAG GCTGAAAACA C 641 hqPGS_C04HBa0127E11.1+_SGN-E255576- (47872 48512) ******************************************************************************** EST sequence 131 -strand 469 n (File: SGN-E258424-) 1 GAGAAGCATG GGAGAGTTTG AAAAGAGCAT TCCCGGATGA CAAGAATGGC AGCAGAGTCA 61 TTATTACCAC GCGCAAAGAG GATATCGCTG AAAGAGCAGC CGACAGAGGT TTTGTTCATA 121 AACTTCGTTT CCTAAGTCAA GAAGAAAGTT GGGATCTCTT TCTTAGGAAA CTACTTGATG 181 TTCGAGCAAT GGTTGCAGAA ATGGAAAGTC TAGCTAAGGA TATGGTGGAA AAGTGTAGAG 241 GTTTACCTCT TGCAATTGTT GTATTGAGCG GACTACTTTC GCATAAAAAG GATCTAGATG 301 AATGGCAAAA GGTGAAAGAT CACCTTTGGA AGAGCATTAA AGAAGATAAA TCTGTTGAAA 361 TCTCCAACAT ACTATCACTA AGCTACAATG ATTTGTCAAT TGAGCTCAAG CAGTGTTTTC 421 TCTACTTTGG TATGTTTCCA GAAGATCGAG TGGTCAAGGC TGAAAACAC Predicted gene structure (within gDNA segment 47434 to 49112): Exon 1 48044 48512 ( 469 n); cDNA 1 469 ( 469 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-E258424- 1.000 469 1.000 C PGS_C04HBa0127E11.1+_SGN-E258424- (48044 48512) Alignment (genomic DNA sequence = upper lines): GAGAAGCATG GGAGAGTTTG AAAAGAGCAT TCCCGGATGA CAAGAATGGC AGCAGAGTCA 48103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGCATG GGAGAGTTTG AAAAGAGCAT TCCCGGATGA CAAGAATGGC AGCAGAGTCA 60 TTATTACCAC GCGCAAAGAG GATATCGCTG AAAGAGCAGC CGACAGAGGT TTTGTTCATA 48163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTACCAC GCGCAAAGAG GATATCGCTG AAAGAGCAGC CGACAGAGGT TTTGTTCATA 120 AACTTCGTTT CCTAAGTCAA GAAGAAAGTT GGGATCTCTT TCTTAGGAAA CTACTTGATG 48223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTCGTTT CCTAAGTCAA GAAGAAAGTT GGGATCTCTT TCTTAGGAAA CTACTTGATG 180 TTCGAGCAAT GGTTGCAGAA ATGGAAAGTC TAGCTAAGGA TATGGTGGAA AAGTGTAGAG 48283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGAGCAAT GGTTGCAGAA ATGGAAAGTC TAGCTAAGGA TATGGTGGAA AAGTGTAGAG 240 GTTTACCTCT TGCAATTGTT GTATTGAGCG GACTACTTTC GCATAAAAAG GATCTAGATG 48343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTACCTCT TGCAATTGTT GTATTGAGCG GACTACTTTC GCATAAAAAG GATCTAGATG 300 AATGGCAAAA GGTGAAAGAT CACCTTTGGA AGAGCATTAA AGAAGATAAA TCTGTTGAAA 48403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCAAAA GGTGAAAGAT CACCTTTGGA AGAGCATTAA AGAAGATAAA TCTGTTGAAA 360 TCTCCAACAT ACTATCACTA AGCTACAATG ATTTGTCAAT TGAGCTCAAG CAGTGTTTTC 48463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCAACAT ACTATCACTA AGCTACAATG ATTTGTCAAT TGAGCTCAAG CAGTGTTTTC 420 TCTACTTTGG TATGTTTCCA GAAGATCGAG TGGTCAAGGC TGAAAACAC 48512 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTACTTTGG TATGTTTCCA GAAGATCGAG TGGTCAAGGC TGAAAACAC 469 hqPGS_C04HBa0127E11.1+_SGN-E258424- (48044 48512) ******************************************************************************** EST sequence 125 -strand 396 n (File: SGN-E258522-) 1 AAGAGGATAT CGTTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 61 GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTG 121 CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA 181 TTGTTGTATT GAGCGGACTA CTTTCGCATA AAAAGGATCT AGATGAATGG CAAAAGGTGA 241 AAGATCACCT TTGGAAGAGC ATTAAAGAAG ATAAATCTGT TGAAATCTCC AACATACTAT 301 CACTAAGCTA CAATGATTTG TCAATTGAGC TCAAGCAGTG TTTTCTCTAC TTTGGTATGT 361 TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA ACACAC Predicted gene structure (within gDNA segment 47392 to 49123): Exon 1 48119 48513 ( 395 n); cDNA 1 395 ( 395 n); score: 0.997 MATCH C04HBa0127E11.1+ SGN-E258522- 0.997 395 0.997 C PGS_C04HBa0127E11.1+_SGN-E258522- (48119 48513) Alignment (genomic DNA sequence = upper lines): AAGAGGATAT CGCTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 48178 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGATAT CGTTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 60 GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTG 48238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTG 120 CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA 48298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA 180 TTGTTGTATT GAGCGGACTA CTTTCGCATA AAAAGGATCT AGATGAATGG CAAAAGGTGA 48358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGTATT GAGCGGACTA CTTTCGCATA AAAAGGATCT AGATGAATGG CAAAAGGTGA 240 AAGATCACCT TTGGAAGAGC ATTAAAGAAG ATAAATCTGT TGAAATCTCC AACATACTAT 48418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATCACCT TTGGAAGAGC ATTAAAGAAG ATAAATCTGT TGAAATCTCC AACATACTAT 300 CACTAAGCTA CAATGATTTG TCAATTGAGC TCAAGCAGTG TTTTCTCTAC TTTGGTATGT 48478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTAAGCTA CAATGATTTG TCAATTGAGC TCAAGCAGTG TTTTCTCTAC TTTGGTATGT 360 TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA ACACA 48513 |||||||||| |||||||||| |||||||||| ||||| TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA ACACA 395 hqPGS_C04HBa0127E11.1+_SGN-E258522- (48119 48513) ******************************************************************************** EST sequence 28 +strand 586 n (File: SGN-E308984+) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 301 AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 421 GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 481 TGGAAAAGTG TAGAGGCTTA CCTCTTGCGA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGGGCT AAACGAATGG AAAAAGGTGA AAGATCACCT TTGGAA Predicted gene structure (within gDNA segment 51238 to 57515): Exon 1 52342 52924 ( 583 n); cDNA 1 584 ( 584 n); score: 0.855 MATCH C04HBa0127E11.1+ SGN-E308984+ 0.855 583 0.995 C PGS_C04HBa0127E11.1+_SGN-E308984+ (52342 52924) Alignment (genomic DNA sequence = upper lines): GCACGACAAC TCTTGCGAGA AACCTATACA TCAGTTCTAC TATAATCTCT AGCTTCCCTA 52401 ||| ||| || |||||| ||| ||||| |||| ||| || |||| || | | || |||| GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 60 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACCAT GGATCTCCTT AGGAATATCA 52461 |||||||||| |||||||||| |||||||||| ||||||| || |||||| ||| | || ||||| CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 120 TAAAATCCAT CCAAGGTTGC ACCAAGGAAA CTCTAGATTT GTTGGAAAAG ATGACAGAGA 52521 |||||||||| |||||||||| |||| || || |||||| || |||||||||| ||| || | TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 180 TCGATCTAGA AATTTACCTT CGTGATCTTT TAAAAGAACC CAAATACCTT GTGGTGGTCG 52581 |||||||| || | ||||| |||||||| | ||||||| |||||||||| || ||||| | GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 240 ATGATTTATG GCATAGAGAA GCATGGGAAA GTTTGAAACG GGCATTTCCA GATAGCAAGA 52641 ||||| |||| ||| |||||| |||||||||| |||||||| | ||||| || ||| || ||| ATGATATATG GCAGAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGGCGAGA 300 A-GGCAGCAG AGTTATTATT ACTACACGCA AAGAGGATGT CGCTGAAAGA GCAGATAACA 52700 | |||||||| ||| |||||| || || |||| |||||||||| ||||||||| ||||| ||| AGGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATGT TGCTGAAAGA GCAGACGACA 360 AAGGTTTTGT CTATAGACTT CGCTTCCTGA GCCAAGAAGA AAGTTGGGAT CTCTTTTGTA 52760 ||||||||| ||| |||| || ||||| | |||||||||| |||||||||| |||||||| | GAGGTTTTGT TCATAAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT CTCTTTTGCA 420 GGAAACTACT TGATGTTCGG GCAATGGTCT CAGCAATGGA AAGGCTAGCA AAGGAAATGG 52820 |||||||||| ||||||||| |||||||| ||| |||||| ||| ||||| |||| |||| GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT GAGGATATGG 480 TGGACAAGTG TGGAGGTTTA CCTCTTGCAG TTGTTGTATT AAGAGGACTA ATTTCACATA 52880 |||| ||||| | |||| ||| |||||||| |||||||||| || |||||| |||| |||| TGGAAAAGTG TAGAGGCTTA CCTCTTGCGA TTGTTGTATT GAGCGGACTA CTTTCGCATA 540 AAAGGGGGCT AGAAGAATGG GAAAAGGTGA AGTACCACCT TTGG 52924 ||| |||||| | | |||||| ||||||||| | | ||||| |||| AAAAGGGGCT AAACGAATGG AAAAAGGTGA AAGATCACCT TTGG 584 hqPGS_C04HBa0127E11.1+_SGN-E308984+ (52342 52924) ******************************************************************************** EST sequence 6 -strand 524 n (File: SGN-E202522-) 1 GGTGGTAAGC AAAAGATACC AATCGAGAAT TTGTCACATT CATGAAGATG CAAGTATGTT 61 ATTTTAGGAG GTTTATCTGA TACAGTTGAC TTGAAATATG GCATATTGGG TCTTAAGCCA 121 ACATATGCTT CAGTCATCTT ATCTCATACT CCCTCCATCA CCATTTCAAA AAGGATGGCC 181 TAGTTTGACT TGGAACGAAT GTTAAGAAAT TAAAGAATAT TTTTAATTTT GTGATTCTAA 241 ATTAAAGTTA TATCAAATGT ACCAAAATGC CATTTAATCT TGTGGTTTTA AACATGTCAC 301 ATGAAAAGTT AAAATTAAAA TTTTGCCGAA AAAGAAAAGG ACTCATTCTT TTTAAACAAA 361 CTAAAAGGAA ATTAGGCACA TTCTTTTCGA AACAAAAACT AAAGTGCCGA TACTTCCCAA 421 TTCCAAAAAA AGTTGTTCCT TTCTTAACCA ACAAGACAAT AATTTTGATG GACTAAAGTG 481 CAGATAAATT CAACCAAAAT CCATAATAGT TTTAAATCAA TTCA Predicted gene structure (within gDNA segment 61113 to 52786): Exon 1 59926 59917 ( 10 n); cDNA 148 157 ( 10 n); score: 0.900 Intron 1 59916 59791 ( 126 n); Pd: 0.614 (s: 0), Pa: 0.720 (s: 0) Exon 2 59790 59785 ( 6 n); cDNA 158 163 ( 6 n); score: 0.500 Intron 2 59784 56490 (3295 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 3 56489 56263 ( 227 n); cDNA 164 389 ( 226 n); score: 0.839 Intron 3 56262 54661 (1602 n); Pd: 0.000 (s: 0.74), Pa: 0.369 (s: 0) Exon 4 54660 54651 ( 10 n); cDNA 390 399 ( 10 n); score: 1.000 Intron 4 54650 53991 ( 660 n); Pd: 0.000 (s: 0), Pa: 0.838 (s: 0) Exon 5 53990 53974 ( 17 n); cDNA 400 415 ( 16 n); score: 0.765 MATCH C04HBa0127E11.1- SGN-E202522- 0.839 270 0.515 C PGS_C04HBa0127E11.1-_SGN-E202522- (59926 59917,59790 59785,56489 56263,54660 54651,53990 53974) Alignment (genomic DNA sequence = upper lines): ACTCCCACCA GTACACCACA ACCCATGTTG GTTATTGACA TCTATTTGAT AAAGCTACTA 59867 |||||| ||| ACTCCCTCCA .......... .......... .......... .......... .......... 157 TCCTTGTTTG ACAACTACAT TGATTAAAGT CTCCACAATG GTCAAGATGA CCATTGGTGA 59807 .......... .......... .......... .......... .......... .......... 157 AAATGTTTCA ATGTAGTCAA GTGTACCCTT TGCCCACCAA CCTAGCCTTG AACCTTGCTA 59747 ||| .......... ......TCAC CA........ .......... .......... .......... 163 CACTTCCATG TCCGCTGTGT TTGATCTTGT AAACCCACCT ACAACCCATT GCCTTCTTTC 59687 .......... .......... .......... .......... .......... .......... 163 CTGCAGGTAG ATTAGCCGAA TGCTAAGTTT GGTTAGCATA TAAAGTCTAA AATTACCGTG 59627 .......... .......... .......... .......... .......... .......... 163 TCATGGTTGG TTGCCATGCA GGATTCATAG CTACTCTCTC ATAGTAATTA GGTTCTCTTA 59567 .......... .......... .......... .......... .......... .......... 163 TCATAAGAAA TGTTTTGCAT AACCGGCTGG CTATCAGGAT CCAGTGAGAT GAGGGGAATT 59507 .......... .......... .......... .......... .......... .......... 163 TTTCCAGTGT TGGTGAAAAG GGCACTGAGA GATGGAGAAG GTTCTTAGAC CTGGTCTTTC 59447 .......... .......... .......... .......... .......... .......... 163 AGAAGGGGAA GATAATAGAC AAATTCCATC AAATGAGGTG GGGTATTGTG GATCCTACAT 59387 .......... .......... .......... .......... .......... .......... 163 CCTAGAGTAT CTCCTAGGAG CAGGTATGTC TAAGTGGCTA CTAGAAGTGG ATGGTGGCAA 59327 .......... .......... .......... .......... .......... .......... 163 GGTCTTATCA AAGAAGGATG ATTGATGAGG TTGATAGGAT GATAGACTTT GATCTGCAAG 59267 .......... .......... .......... .......... .......... .......... 163 TAAAGGAGCG TATCGGTAGG ACTGGCAGTG TGAAGTATCA ATCTGTTAGA GTCAAGAGGA 59207 .......... .......... .......... .......... .......... .......... 163 GCAGTAACAG AAGGTGGAGT GTTCTTGGTG TGCAATTGAC ATTCATCTAA AGTATGTAAT 59147 .......... .......... .......... .......... .......... .......... 163 TCTGTATAAC ATTGATATCA CACATAGCTG TGGTCTTACA AGTATCACAC ATTTAGACAA 59087 .......... .......... .......... .......... .......... .......... 163 ACAATTATTC ATAGGTTGAG AGCTTCAAAA AAAATATTTC ATAGGTTGAG AAAAAGCAAC 59027 .......... .......... .......... .......... .......... .......... 163 AGGAACATAA AGTGAAACAT GACATGACTC AGTAAATTGG CACTTCGCGC AGAGAAAGTA 58967 .......... .......... .......... .......... .......... .......... 163 TATTATGAAG TTGGGTTTGA TGTCTAAATT CTGTGTTGCT TTATGGATTC ATTTGACGAA 58907 .......... .......... .......... .......... .......... .......... 163 TTGAGTAATT TTACTGGGAA TTGCTGGACT TGAACTGTGA CATTTTTTTT CCTTCACAAA 58847 .......... .......... .......... .......... .......... .......... 163 AAACATGATT TTGGAAGTTT TATTGTTAAC AGTGAGCATC TATGTTCTAT GGATTTTAAT 58787 .......... .......... .......... .......... .......... .......... 163 TTCTTTTCTC ATCCCAAAGA AATCAAAACA AGATATAAGA AAAAGAGAGC AAAACAATAG 58727 .......... .......... .......... .......... .......... .......... 163 AAAAAACTCC AACGCAGCTT CAAAACTTTT TTTTTTTTGG TATTCAGTAT CTAAGTGACA 58667 .......... .......... .......... .......... .......... .......... 163 TGTACTTTCT CAACTGACTC TTGTGAAAAA CTGATGTGTG ACATCTTTTT TCTGTTTTGT 58607 .......... .......... .......... .......... .......... .......... 163 TGGTATTTTG TAGTGGTATT TAGTGTCATT TATGTCATTG ATGCAATCTT GATATTAATT 58547 .......... .......... .......... .......... .......... .......... 163 ACTAGCATGA AATGAATGTG ACACATCATT TAATTAGACG GAAGATGGAT TAAAGAGGAA 58487 .......... .......... .......... .......... .......... .......... 163 GCCATCTGGA AGAAGGCCCT ATGTCGAAAA CATTTAAACA GTTACACTCT TTAGTGTGTG 58427 .......... .......... .......... .......... .......... .......... 163 TTCATCGGAA CTGGGGGTTA ACCATGATGT TTTCCAACTC GATGAGTTTC TCCATATCGA 58367 .......... .......... .......... .......... .......... .......... 163 GCAATTAATA GTCTTAATAA TCAGATTCAA CAGTAACATA TTACATAAAA CATTATCTTA 58307 .......... .......... .......... .......... .......... .......... 163 AATGTGGATA AGCAAGATAA CTTACCGCAG ACCAATTAAT TTATGTTAAC ACTAGCATTT 58247 .......... .......... .......... .......... .......... .......... 163 ATGCATAGAA TGCCAAAACC AATTCTCTTC AAACCAATTC CACACGCACA AAAAGAAATT 58187 .......... .......... .......... .......... .......... .......... 163 AAACACTACT GAAGACATTG ACTCTCTTTG GCAGCCCTGA AATAATCAGC AAAGCGGCAG 58127 .......... .......... .......... .......... .......... .......... 163 AAACCTGTTT AATGCTTTTA CAATCCAACT TCATTTATGC ATATGTCTTC AAGTGCTTGT 58067 .......... .......... .......... .......... .......... .......... 163 CAAAAATGGA TCAATAAAAG ACAGCTTCTT TTCCCGTTTT ACCCAAATTG TAAGACACTT 58007 .......... .......... .......... .......... .......... .......... 163 TTTAACATAA TAACTAGTAG TCAATAAAAA CGAAAAGATT TATCAATTAT TTAAAATAAT 57947 .......... .......... .......... .......... .......... .......... 163 GATTTAACTA TAATGTTCAA GGCATTATAG TTACATCTAA TTTTTTTTAT AGATTATGTG 57887 .......... .......... .......... .......... .......... .......... 163 GGGAAGGTAC AATCCTCAAA AATATTGTAC ATAGTTTTGA AAATTTTATA ATTTCTCTTC 57827 .......... .......... .......... .......... .......... .......... 163 AAAGTTATAT ATGTTATTAC TACTGATTCT TGTGTGCTTA CTGGTACCCG CTTCATAAGG 57767 .......... .......... .......... .......... .......... .......... 163 ACTTCCTATA ATATAAGCCC AAAGTTTGTG GTTGATGCTT AATCATGGGA AAGAGGATTT 57707 .......... .......... .......... .......... .......... .......... 163 ATTTTCTCCT TTTGTCTACT TTTACAGGGT GTACTTTGAG GAAGGTGAAT GCTCAAATTC 57647 .......... .......... .......... .......... .......... .......... 163 GTCATTCTTT TTAGTGGAAA AATACATCTC GAGATGATGG AAATTGAAAT TGCGTCCCTT 57587 .......... .......... .......... .......... .......... .......... 163 TACCACTACG TATAAGCTGG TCAAGCTGAT TTTGAGTTGT TTTCGGTACA ACTTTTAGCT 57527 .......... .......... .......... .......... .......... .......... 163 TGAATATTCT GAGTGTCCTC CTTTCTCTCG ACTGAGTAGC TTTTACTCTA CAAGAAATTC 57467 .......... .......... .......... .......... .......... .......... 163 ATCTGCTAGA GTAGTTCTGC AAAAGAAAAG CAATCAAAAT AATGGATGAT CGGGTTGTTC 57407 .......... .......... .......... .......... .......... .......... 163 TTGACAAGGG TGGAACAAGG AAGTTGCCTC AGTGGATGTT TGCTACATCT GCTGCTGATC 57347 .......... .......... .......... .......... .......... .......... 163 AAGTAAAGGA AAAAGCCAAA ACTGATAAAG TAGACAATAA TAATACTACA GAGAAGGAGA 57287 .......... .......... .......... .......... .......... .......... 163 TTGTCACTCA GAAACAGAAA AATAGAAGGA TTAAGGATAA AAAGGAAACA TTCACTGAGG 57227 .......... .......... .......... .......... .......... .......... 163 AGTCGTCCAC TCAGCTTCCA ATATGCCAAA CAACAAAAAG AAGCAGAAGA AAATTAAACC 57167 .......... .......... .......... .......... .......... .......... 163 TACCAAATGA TTATTGTAAT GATGAAAGCA CTTCAATGGG GAGTGAATGT GACAGCAAGC 57107 .......... .......... .......... .......... .......... .......... 163 AAGCAAGTGG TGATGGAGAG GTTCCTATGT TGAGGAGACA GAAACAGAAA ACGAAGAATT 57047 .......... .......... .......... .......... .......... .......... 163 CCAAGACTGA GAGAGTTGCT GAGATGGAAG AGTCCACAAC AACAGCAAGT GATAGATGCG 56987 .......... .......... .......... .......... .......... .......... 163 GCTTAAGGAA GAGAAAATGC AGCAGATTGA AGGAAAATTC TAGTGAAGCT GGCCCTAGTT 56927 .......... .......... .......... .......... .......... .......... 163 TAAGGAGGCA GAAACAGAAA ACAAAGAATT CCTGGAATGA GAATTGTGCT GATGTTGAAG 56867 .......... .......... .......... .......... .......... .......... 163 AGTCAACACC AAACACAGAC GATGAGGATT TGACTGTTGA AGATCTAATG CACATGGCGG 56807 .......... .......... .......... .......... .......... .......... 163 AAGAGGTGAC CTCTTTAATT CTCTTGAGGT TTCCTAAACA ATTCTTCAAG TTTACCATCT 56747 .......... .......... .......... .......... .......... .......... 163 AAAGTAATGA TCACATTTGG CCAGAAATGT GGTACCTCAG ATTTTCTTAC TGTTCATTTT 56687 .......... .......... .......... .......... .......... .......... 163 TGCAGTATGC TGGTGATGCT GATGAAGATT TGACCGTTGA AGATTTGATG AGCATTGCTA 56627 .......... .......... .......... .......... .......... .......... 163 AGGAGGTGAT TATTGATATC TAAATCTTAT TAATTTTGAA ACATCTGAAT CATTTACTAA 56567 .......... .......... .......... .......... .......... .......... 163 AGCTTTAATT GCTATTAAAA ATGAGAGGCA CTACTTCACT TGCTATTTAA AAATACAGAA 56507 .......... .......... .......... .......... .......... .......... 163 ATAAGTGACT CCCTCAGTTT CAAAAAGAAT GACCTAGTTT GACTTGGAAC GGAGTTTAAG 56447 ||| ||||||| || | |||||||| |||||||||| | | ||||| .......... .......TTT CAAAAAGGAT GGCCTAGTTT GACTTGGAAC GAATGTTAAG 206 AAAAGAAAGA AGACCTTTTT ATCTTGTGAT TCTAAATTAA AATTATGTCA AATGTACCAA 56387 ||| ||||| | | |||| || ||||||| |||||||||| | |||| ||| |||||||||| AAATTAAAGA ATA-TTTTTA ATTTTGTGAT TCTAAATTAA AGTTATATCA AATGTACCAA 265 AATGTCATTT AATCTTGTGG TCTTAAACAT GCCACGTGGA AAGTTAAAGT TAAAGTGTTG 56327 |||| ||||| |||||||||| | |||||||| | ||| || | |||||||| | |||| | ||| AATGCCATTT AATCTTGTGG TTTTAAACAT GTCACATGAA AAGTTAAAAT TAAAATTTTG 325 CCAAAAAAGG AAAGG-GTCA TTCTTTTTGA AACAGACTAA AAAGAAAATA GAGTTATTCT 56268 || |||||| ||||| ||| |||||||| | |||| ||||| || |||| || | ||||| CCGAAAAAGA AAAGGACTCA TTCTTTTT-A AACAAACTAA AAGGAAATTA GGCACATTCT 384 TTTTGAAATG GAGGGAGTAT TAATCTGTGG CATTTGAATG ATTTTTAAAA TATATGTGGT 56208 ||| | TTTCG..... .......... .......... .......... .......... .......... 389 GTCTTGAGTT ATTGTCGTGC TTTTATGTGG GTGAGGCAGG GGGCGAATGA ATCTCCTCTT 56148 .......... .......... .......... .......... .......... .......... 389 CTCTTCTTCT CCTTATTTGT AGCATTAGTT AGTATTCACG TAGTATCATA TTCTTTAATT 56088 .......... .......... .......... .......... .......... .......... 389 TTTACTACTA CCTGTTGCTT CATTTGCTTT TTTCATCTTG CTACTTTGCT CTCGTTATTT 56028 .......... .......... .......... .......... .......... .......... 389 CCCTTCCAAT CATTCTTTGA TTACACTTCT TTTGAGCCGA GGGTAGGGGT AAGGTCTGTG 55968 .......... .......... .......... .......... .......... .......... 389 TAGACCCCAC TTGCGAGATT ACATCCGGTA AGTTGTTGTT GTTGGTGTCT TAAGTGCTCT 55908 .......... .......... .......... .......... .......... .......... 389 TGTTGTTTGG TATTAAAAAT TGATACTTTG ACTTTTGTTG TAAATATGAG AATTATTGGT 55848 .......... .......... .......... .......... .......... .......... 389 TGTTATTGTA TTTTCCATTT CCTGGCAGTA TGTTAATGAG AATGAGCAAG CTACATCAGG 55788 .......... .......... .......... .......... .......... .......... 389 CAAAGGAAAA AGTGGTCCAA CGGAGGATGC TATTTCCATG TCAATAGGCT CATTAAGTGA 55728 .......... .......... .......... .......... .......... .......... 389 AGTTGACAAT CAATCTTTGA GAAGAGAAAC AAATTTTGAT TGTATTTCAA TTCAAGAGAG 55668 .......... .......... .......... .......... .......... .......... 389 AACAATTGAA GATGCTTCTC CTAAGCTTAA CATGTCCGAG AATCCGACCC AAGACATGTT 55608 .......... .......... .......... .......... .......... .......... 389 AGATTTGTTT CTTGGTCCCC TATTGAAGAA AACTCACGAG GAGAAGAGAG TTGAACTGGT 55548 .......... .......... .......... .......... .......... .......... 389 CAGAGAAGAA ATGAGTTTAG CTCATGATCT GAACAAGAAA ACCCAAAGTA ATCCTTCTGA 55488 .......... .......... .......... .......... .......... .......... 389 GGTTCAGCCA CTTATGGTGA AGAAGAAAAG CAGTCTCAAG GACAAGGTAT CACTATTTCT 55428 .......... .......... .......... .......... .......... .......... 389 TGACTGATAC TTCTGAAGGT AGTTAGGTAG TATATTTGGA AGAACAAGTT TAGTTAAATA 55368 .......... .......... .......... .......... .......... .......... 389 TTAACTTAAA CATTTACTTG TCTGCTTATT AATTCCATGA GAGAATATCT TTATTTTAGA 55308 .......... .......... .......... .......... .......... .......... 389 TTCTTCATAG TAGTTTTCTC TCTGTCTCAT CATTGTACAG AAATTATGAG AACTTGATAT 55248 .......... .......... .......... .......... .......... .......... 389 CCAGTTATAT AAAGAAGGAA TATTTTTCCT TAGAAATGAA TAGACTTGAA AGGAAGAATC 55188 .......... .......... .......... .......... .......... .......... 389 CTCAATAGCT GTGTATTATT TTTTGTCAGC TATATCTACC AAAATGTTAT GTCAGAGTTA 55128 .......... .......... .......... .......... .......... .......... 389 GCAACTATAT CAAAAAGGCA TTATACATAA ATAAACTTAG CCTTAACTGA CAAGTAAACA 55068 .......... .......... .......... .......... .......... .......... 389 CTCAACTTTG AGAGTGCATG TATAGACACC TCAACTTGGT CCTAACTAGC AACTAAACAC 55008 .......... .......... .......... .......... .......... .......... 389 TCCATCTTTT CCTGTGTCTA CTGGATGGGG GATGCATCTG TATAACATTG AATATCATAT 54948 .......... .......... .......... .......... .......... .......... 389 ATAGCAGTGG TCTTACAAGT ATCACACACA TTATTAGACA TACAAGTATT CATAGGTTGA 54888 .......... .......... .......... .......... .......... .......... 389 GAAAAAAGGA CACAGGAACA GAAAATGAAA CATGAAAATG ATACAGCGAA TCAGTGAAAT 54828 .......... .......... .......... .......... .......... .......... 389 AGTTTTTAGT TTTCATGGCT GTTTGACGAA TTGAGTAATT TGCCGGGAAT TGCTGGACTT 54768 .......... .......... .......... .......... .......... .......... 389 GAACTGTGAC ATTTTTTTTC CTTCACAAAA GACATGATTT GGAAGTTTTA TAACAAACCA 54708 .......... .......... .......... .......... .......... .......... 389 TGAGCATCTA CGTTCTATGG ATTTTAATTT CTTTTCTCAT CTCAAAGAAA CAAAAACAAG 54648 ||| ||||||| .......... .......... .......... .......... .......AAA CAAAAAC... 399 ATATAAGAAA AAGAGAGCAA AACACTAGAA AACACTTCAA TGCAGCTTCA AAACTCCTTT 54588 .......... .......... .......... .......... .......... .......... 399 TGGTATTCAG GATCTAAGAG ACATTAACTT TGTCAACTGC CTCTTGTGAA AAATTGATAT 54528 .......... .......... .......... .......... .......... .......... 399 GTGTCATTAT CTTTCTGTTT TGTTATTCTG TTGTGGAATT TGGTGTTGTT TCTGCCATGA 54468 .......... .......... .......... .......... .......... .......... 399 TGCAATCTTG ATGTTAATTA CTAGCATGAA ATGAATGTGA TGCAGCATTT AAGTAGACGG 54408 .......... .......... .......... .......... .......... .......... 399 AAGAGGGATC AAAGAGGGAG CCTTCTGGTT AGCTTAAAGG ATTGCCTATC GAAATCATTT 54348 .......... .......... .......... .......... .......... .......... 399 AGACAGTTAT GCTCTTTAGG GTGTTCATTG GAAGTGGTAG TTACCCACGA TGTTTTCCAA 54288 .......... .......... .......... .......... .......... .......... 399 CTTGTAGAGT TTCTCCATAT TGAGCTATTA ATAGTGTTTA AGTTTATCAA GTTAGTTCTC 54228 .......... .......... .......... .......... .......... .......... 399 TGGGGAGATA ATCAGATTCT ACAGTAACCT ATTACATAAA GCATTATCTT AAATGTGGAT 54168 .......... .......... .......... .......... .......... .......... 399 AAGCAAGATA ACATAGCGTA GAACAATTAA TTAACATATT AACATTGTTT ATGCATAGAA 54108 .......... .......... .......... .......... .......... .......... 399 TCCCAAAAGA ACAGTTCTCT TCCAATACAC ATTAAATAAA ACCAAAACCA AAAATAAATT 54048 .......... .......... .......... .......... .......... .......... 399 ATACATTGAA AAATCAAACC CAAAAAAATA AAAAAAATTG AATGCTGAAA TAATCAGTTA 53988 | | .......... .......... .......... .......... .......... .......TAA 402 AGTGACAGAA ACTT 53974 |||| | || |||| AGTG-CCGAT ACTT 415 hqPGS_C04HBa0127E11.1-_SGN-E202522- (56489 56263) ******************************************************************************** EST sequence 14 -strand 646 n (File: SGN-E398306-) 1 TGTAGTTGAT TTCGGAAGGA GATTGTCCGC CCAATCATAA GATTTTATGT GCATTTTCCC 61 AAAGAGAAGC TTGCTGAAAA CTGTCATTCC AGGATGGTTA TGAAGAGGAA TGACTGCTTT 121 TGGTGGTAAG CAAAAGATAC CAATCGAGAA TTTGTCACAT TCATGGAGAT GCAAGTATGT 181 TATTTTAGGA GGTTTATCTG ATACAGTTGA CTTGAAATAT GGCATATTGG GTCTTAAGCC 241 AACATCTGCT TCAGTCATCT TATCTCATAC TCCCTCCATC ACCATTTCAA AAAGGATGGC 301 CTAGTTTGAC TTGGAACGAA TGTTAAGAAA TTAAAGAATA TTTTTAATTT TGTGATTCTA 361 AATTAAAGTT ATATCAAATG TACCAAAATG CCATTTAATC TTGTGGTTTT AAACATGTCA 421 CATGAAAAGT TAAAATTAAA ATTTTGCCGA AAAAGAAAAG GACTCATTCT TTTTAAACAA 481 ACTAAAAGGA AATTAGGCAC ATTCTTTTCG AAACAAAAAC TAAAGTGCCG ATACTTCCCA 541 ATTCCAAAAA AAGTTGTTCC TTTCTTAACC AACAAGACAA TAATTTTGAT GGACTAAAGT 601 GCAGATAAAT TCAACCAAAA TCCATAATAG TTTTAAATCA ATTCAG Predicted gene structure (within gDNA segment 61123 to 52776): Exon 1 59926 59917 ( 10 n); cDNA 269 278 ( 10 n); score: 0.900 Intron 1 59916 59791 ( 126 n); Pd: 0.614 (s: 0), Pa: 0.720 (s: 0) Exon 2 59790 59785 ( 6 n); cDNA 279 284 ( 6 n); score: 0.500 Intron 2 59784 56490 (3295 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 3 56489 56263 ( 227 n); cDNA 285 510 ( 226 n); score: 0.839 Intron 3 56262 54661 (1602 n); Pd: 0.000 (s: 0.74), Pa: 0.369 (s: 0) Exon 4 54660 54651 ( 10 n); cDNA 511 520 ( 10 n); score: 1.000 Intron 4 54650 53991 ( 660 n); Pd: 0.000 (s: 0), Pa: 0.838 (s: 0) Exon 5 53990 53974 ( 17 n); cDNA 521 536 ( 16 n); score: 0.765 MATCH C04HBa0127E11.1- SGN-E398306- 0.839 270 0.418 C PGS_C04HBa0127E11.1-_SGN-E398306- (59926 59917,59790 59785,56489 56263,54660 54651,53990 53974) Alignment (genomic DNA sequence = upper lines): ACTCCCACCA GTACACCACA ACCCATGTTG GTTATTGACA TCTATTTGAT AAAGCTACTA 59867 |||||| ||| ACTCCCTCCA .......... .......... .......... .......... .......... 278 TCCTTGTTTG ACAACTACAT TGATTAAAGT CTCCACAATG GTCAAGATGA CCATTGGTGA 59807 .......... .......... .......... .......... .......... .......... 278 AAATGTTTCA ATGTAGTCAA GTGTACCCTT TGCCCACCAA CCTAGCCTTG AACCTTGCTA 59747 ||| .......... ......TCAC CA........ .......... .......... .......... 284 CACTTCCATG TCCGCTGTGT TTGATCTTGT AAACCCACCT ACAACCCATT GCCTTCTTTC 59687 .......... .......... .......... .......... .......... .......... 284 CTGCAGGTAG ATTAGCCGAA TGCTAAGTTT GGTTAGCATA TAAAGTCTAA AATTACCGTG 59627 .......... .......... .......... .......... .......... .......... 284 TCATGGTTGG TTGCCATGCA GGATTCATAG CTACTCTCTC ATAGTAATTA GGTTCTCTTA 59567 .......... .......... .......... .......... .......... .......... 284 TCATAAGAAA TGTTTTGCAT AACCGGCTGG CTATCAGGAT CCAGTGAGAT GAGGGGAATT 59507 .......... .......... .......... .......... .......... .......... 284 TTTCCAGTGT TGGTGAAAAG GGCACTGAGA GATGGAGAAG GTTCTTAGAC CTGGTCTTTC 59447 .......... .......... .......... .......... .......... .......... 284 AGAAGGGGAA GATAATAGAC AAATTCCATC AAATGAGGTG GGGTATTGTG GATCCTACAT 59387 .......... .......... .......... .......... .......... .......... 284 CCTAGAGTAT CTCCTAGGAG CAGGTATGTC TAAGTGGCTA CTAGAAGTGG ATGGTGGCAA 59327 .......... .......... .......... .......... .......... .......... 284 GGTCTTATCA AAGAAGGATG ATTGATGAGG TTGATAGGAT GATAGACTTT GATCTGCAAG 59267 .......... .......... .......... .......... .......... .......... 284 TAAAGGAGCG TATCGGTAGG ACTGGCAGTG TGAAGTATCA ATCTGTTAGA GTCAAGAGGA 59207 .......... .......... .......... .......... .......... .......... 284 GCAGTAACAG AAGGTGGAGT GTTCTTGGTG TGCAATTGAC ATTCATCTAA AGTATGTAAT 59147 .......... .......... .......... .......... .......... .......... 284 TCTGTATAAC ATTGATATCA CACATAGCTG TGGTCTTACA AGTATCACAC ATTTAGACAA 59087 .......... .......... .......... .......... .......... .......... 284 ACAATTATTC ATAGGTTGAG AGCTTCAAAA AAAATATTTC ATAGGTTGAG AAAAAGCAAC 59027 .......... .......... .......... .......... .......... .......... 284 AGGAACATAA AGTGAAACAT GACATGACTC AGTAAATTGG CACTTCGCGC AGAGAAAGTA 58967 .......... .......... .......... .......... .......... .......... 284 TATTATGAAG TTGGGTTTGA TGTCTAAATT CTGTGTTGCT TTATGGATTC ATTTGACGAA 58907 .......... .......... .......... .......... .......... .......... 284 TTGAGTAATT TTACTGGGAA TTGCTGGACT TGAACTGTGA CATTTTTTTT CCTTCACAAA 58847 .......... .......... .......... .......... .......... .......... 284 AAACATGATT TTGGAAGTTT TATTGTTAAC AGTGAGCATC TATGTTCTAT GGATTTTAAT 58787 .......... .......... .......... .......... .......... .......... 284 TTCTTTTCTC ATCCCAAAGA AATCAAAACA AGATATAAGA AAAAGAGAGC AAAACAATAG 58727 .......... .......... .......... .......... .......... .......... 284 AAAAAACTCC AACGCAGCTT CAAAACTTTT TTTTTTTTGG TATTCAGTAT CTAAGTGACA 58667 .......... .......... .......... .......... .......... .......... 284 TGTACTTTCT CAACTGACTC TTGTGAAAAA CTGATGTGTG ACATCTTTTT TCTGTTTTGT 58607 .......... .......... .......... .......... .......... .......... 284 TGGTATTTTG TAGTGGTATT TAGTGTCATT TATGTCATTG ATGCAATCTT GATATTAATT 58547 .......... .......... .......... .......... .......... .......... 284 ACTAGCATGA AATGAATGTG ACACATCATT TAATTAGACG GAAGATGGAT TAAAGAGGAA 58487 .......... .......... .......... .......... .......... .......... 284 GCCATCTGGA AGAAGGCCCT ATGTCGAAAA CATTTAAACA GTTACACTCT TTAGTGTGTG 58427 .......... .......... .......... .......... .......... .......... 284 TTCATCGGAA CTGGGGGTTA ACCATGATGT TTTCCAACTC GATGAGTTTC TCCATATCGA 58367 .......... .......... .......... .......... .......... .......... 284 GCAATTAATA GTCTTAATAA TCAGATTCAA CAGTAACATA TTACATAAAA CATTATCTTA 58307 .......... .......... .......... .......... .......... .......... 284 AATGTGGATA AGCAAGATAA CTTACCGCAG ACCAATTAAT TTATGTTAAC ACTAGCATTT 58247 .......... .......... .......... .......... .......... .......... 284 ATGCATAGAA TGCCAAAACC AATTCTCTTC AAACCAATTC CACACGCACA AAAAGAAATT 58187 .......... .......... .......... .......... .......... .......... 284 AAACACTACT GAAGACATTG ACTCTCTTTG GCAGCCCTGA AATAATCAGC AAAGCGGCAG 58127 .......... .......... .......... .......... .......... .......... 284 AAACCTGTTT AATGCTTTTA CAATCCAACT TCATTTATGC ATATGTCTTC AAGTGCTTGT 58067 .......... .......... .......... .......... .......... .......... 284 CAAAAATGGA TCAATAAAAG ACAGCTTCTT TTCCCGTTTT ACCCAAATTG TAAGACACTT 58007 .......... .......... .......... .......... .......... .......... 284 TTTAACATAA TAACTAGTAG TCAATAAAAA CGAAAAGATT TATCAATTAT TTAAAATAAT 57947 .......... .......... .......... .......... .......... .......... 284 GATTTAACTA TAATGTTCAA GGCATTATAG TTACATCTAA TTTTTTTTAT AGATTATGTG 57887 .......... .......... .......... .......... .......... .......... 284 GGGAAGGTAC AATCCTCAAA AATATTGTAC ATAGTTTTGA AAATTTTATA ATTTCTCTTC 57827 .......... .......... .......... .......... .......... .......... 284 AAAGTTATAT ATGTTATTAC TACTGATTCT TGTGTGCTTA CTGGTACCCG CTTCATAAGG 57767 .......... .......... .......... .......... .......... .......... 284 ACTTCCTATA ATATAAGCCC AAAGTTTGTG GTTGATGCTT AATCATGGGA AAGAGGATTT 57707 .......... .......... .......... .......... .......... .......... 284 ATTTTCTCCT TTTGTCTACT TTTACAGGGT GTACTTTGAG GAAGGTGAAT GCTCAAATTC 57647 .......... .......... .......... .......... .......... .......... 284 GTCATTCTTT TTAGTGGAAA AATACATCTC GAGATGATGG AAATTGAAAT TGCGTCCCTT 57587 .......... .......... .......... .......... .......... .......... 284 TACCACTACG TATAAGCTGG TCAAGCTGAT TTTGAGTTGT TTTCGGTACA ACTTTTAGCT 57527 .......... .......... .......... .......... .......... .......... 284 TGAATATTCT GAGTGTCCTC CTTTCTCTCG ACTGAGTAGC TTTTACTCTA CAAGAAATTC 57467 .......... .......... .......... .......... .......... .......... 284 ATCTGCTAGA GTAGTTCTGC AAAAGAAAAG CAATCAAAAT AATGGATGAT CGGGTTGTTC 57407 .......... .......... .......... .......... .......... .......... 284 TTGACAAGGG TGGAACAAGG AAGTTGCCTC AGTGGATGTT TGCTACATCT GCTGCTGATC 57347 .......... .......... .......... .......... .......... .......... 284 AAGTAAAGGA AAAAGCCAAA ACTGATAAAG TAGACAATAA TAATACTACA GAGAAGGAGA 57287 .......... .......... .......... .......... .......... .......... 284 TTGTCACTCA GAAACAGAAA AATAGAAGGA TTAAGGATAA AAAGGAAACA TTCACTGAGG 57227 .......... .......... .......... .......... .......... .......... 284 AGTCGTCCAC TCAGCTTCCA ATATGCCAAA CAACAAAAAG AAGCAGAAGA AAATTAAACC 57167 .......... .......... .......... .......... .......... .......... 284 TACCAAATGA TTATTGTAAT GATGAAAGCA CTTCAATGGG GAGTGAATGT GACAGCAAGC 57107 .......... .......... .......... .......... .......... .......... 284 AAGCAAGTGG TGATGGAGAG GTTCCTATGT TGAGGAGACA GAAACAGAAA ACGAAGAATT 57047 .......... .......... .......... .......... .......... .......... 284 CCAAGACTGA GAGAGTTGCT GAGATGGAAG AGTCCACAAC AACAGCAAGT GATAGATGCG 56987 .......... .......... .......... .......... .......... .......... 284 GCTTAAGGAA GAGAAAATGC AGCAGATTGA AGGAAAATTC TAGTGAAGCT GGCCCTAGTT 56927 .......... .......... .......... .......... .......... .......... 284 TAAGGAGGCA GAAACAGAAA ACAAAGAATT CCTGGAATGA GAATTGTGCT GATGTTGAAG 56867 .......... .......... .......... .......... .......... .......... 284 AGTCAACACC AAACACAGAC GATGAGGATT TGACTGTTGA AGATCTAATG CACATGGCGG 56807 .......... .......... .......... .......... .......... .......... 284 AAGAGGTGAC CTCTTTAATT CTCTTGAGGT TTCCTAAACA ATTCTTCAAG TTTACCATCT 56747 .......... .......... .......... .......... .......... .......... 284 AAAGTAATGA TCACATTTGG CCAGAAATGT GGTACCTCAG ATTTTCTTAC TGTTCATTTT 56687 .......... .......... .......... .......... .......... .......... 284 TGCAGTATGC TGGTGATGCT GATGAAGATT TGACCGTTGA AGATTTGATG AGCATTGCTA 56627 .......... .......... .......... .......... .......... .......... 284 AGGAGGTGAT TATTGATATC TAAATCTTAT TAATTTTGAA ACATCTGAAT CATTTACTAA 56567 .......... .......... .......... .......... .......... .......... 284 AGCTTTAATT GCTATTAAAA ATGAGAGGCA CTACTTCACT TGCTATTTAA AAATACAGAA 56507 .......... .......... .......... .......... .......... .......... 284 ATAAGTGACT CCCTCAGTTT CAAAAAGAAT GACCTAGTTT GACTTGGAAC GGAGTTTAAG 56447 ||| ||||||| || | |||||||| |||||||||| | | ||||| .......... .......TTT CAAAAAGGAT GGCCTAGTTT GACTTGGAAC GAATGTTAAG 327 AAAAGAAAGA AGACCTTTTT ATCTTGTGAT TCTAAATTAA AATTATGTCA AATGTACCAA 56387 ||| ||||| | | |||| || ||||||| |||||||||| | |||| ||| |||||||||| AAATTAAAGA ATA-TTTTTA ATTTTGTGAT TCTAAATTAA AGTTATATCA AATGTACCAA 386 AATGTCATTT AATCTTGTGG TCTTAAACAT GCCACGTGGA AAGTTAAAGT TAAAGTGTTG 56327 |||| ||||| |||||||||| | |||||||| | ||| || | |||||||| | |||| | ||| AATGCCATTT AATCTTGTGG TTTTAAACAT GTCACATGAA AAGTTAAAAT TAAAATTTTG 446 CCAAAAAAGG AAAGG-GTCA TTCTTTTTGA AACAGACTAA AAAGAAAATA GAGTTATTCT 56268 || |||||| ||||| ||| |||||||| | |||| ||||| || |||| || | ||||| CCGAAAAAGA AAAGGACTCA TTCTTTTT-A AACAAACTAA AAGGAAATTA GGCACATTCT 505 TTTTGAAATG GAGGGAGTAT TAATCTGTGG CATTTGAATG ATTTTTAAAA TATATGTGGT 56208 ||| | TTTCG..... .......... .......... .......... .......... .......... 510 GTCTTGAGTT ATTGTCGTGC TTTTATGTGG GTGAGGCAGG GGGCGAATGA ATCTCCTCTT 56148 .......... .......... .......... .......... .......... .......... 510 CTCTTCTTCT CCTTATTTGT AGCATTAGTT AGTATTCACG TAGTATCATA TTCTTTAATT 56088 .......... .......... .......... .......... .......... .......... 510 TTTACTACTA CCTGTTGCTT CATTTGCTTT TTTCATCTTG CTACTTTGCT CTCGTTATTT 56028 .......... .......... .......... .......... .......... .......... 510 CCCTTCCAAT CATTCTTTGA TTACACTTCT TTTGAGCCGA GGGTAGGGGT AAGGTCTGTG 55968 .......... .......... .......... .......... .......... .......... 510 TAGACCCCAC TTGCGAGATT ACATCCGGTA AGTTGTTGTT GTTGGTGTCT TAAGTGCTCT 55908 .......... .......... .......... .......... .......... .......... 510 TGTTGTTTGG TATTAAAAAT TGATACTTTG ACTTTTGTTG TAAATATGAG AATTATTGGT 55848 .......... .......... .......... .......... .......... .......... 510 TGTTATTGTA TTTTCCATTT CCTGGCAGTA TGTTAATGAG AATGAGCAAG CTACATCAGG 55788 .......... .......... .......... .......... .......... .......... 510 CAAAGGAAAA AGTGGTCCAA CGGAGGATGC TATTTCCATG TCAATAGGCT CATTAAGTGA 55728 .......... .......... .......... .......... .......... .......... 510 AGTTGACAAT CAATCTTTGA GAAGAGAAAC AAATTTTGAT TGTATTTCAA TTCAAGAGAG 55668 .......... .......... .......... .......... .......... .......... 510 AACAATTGAA GATGCTTCTC CTAAGCTTAA CATGTCCGAG AATCCGACCC AAGACATGTT 55608 .......... .......... .......... .......... .......... .......... 510 AGATTTGTTT CTTGGTCCCC TATTGAAGAA AACTCACGAG GAGAAGAGAG TTGAACTGGT 55548 .......... .......... .......... .......... .......... .......... 510 CAGAGAAGAA ATGAGTTTAG CTCATGATCT GAACAAGAAA ACCCAAAGTA ATCCTTCTGA 55488 .......... .......... .......... .......... .......... .......... 510 GGTTCAGCCA CTTATGGTGA AGAAGAAAAG CAGTCTCAAG GACAAGGTAT CACTATTTCT 55428 .......... .......... .......... .......... .......... .......... 510 TGACTGATAC TTCTGAAGGT AGTTAGGTAG TATATTTGGA AGAACAAGTT TAGTTAAATA 55368 .......... .......... .......... .......... .......... .......... 510 TTAACTTAAA CATTTACTTG TCTGCTTATT AATTCCATGA GAGAATATCT TTATTTTAGA 55308 .......... .......... .......... .......... .......... .......... 510 TTCTTCATAG TAGTTTTCTC TCTGTCTCAT CATTGTACAG AAATTATGAG AACTTGATAT 55248 .......... .......... .......... .......... .......... .......... 510 CCAGTTATAT AAAGAAGGAA TATTTTTCCT TAGAAATGAA TAGACTTGAA AGGAAGAATC 55188 .......... .......... .......... .......... .......... .......... 510 CTCAATAGCT GTGTATTATT TTTTGTCAGC TATATCTACC AAAATGTTAT GTCAGAGTTA 55128 .......... .......... .......... .......... .......... .......... 510 GCAACTATAT CAAAAAGGCA TTATACATAA ATAAACTTAG CCTTAACTGA CAAGTAAACA 55068 .......... .......... .......... .......... .......... .......... 510 CTCAACTTTG AGAGTGCATG TATAGACACC TCAACTTGGT CCTAACTAGC AACTAAACAC 55008 .......... .......... .......... .......... .......... .......... 510 TCCATCTTTT CCTGTGTCTA CTGGATGGGG GATGCATCTG TATAACATTG AATATCATAT 54948 .......... .......... .......... .......... .......... .......... 510 ATAGCAGTGG TCTTACAAGT ATCACACACA TTATTAGACA TACAAGTATT CATAGGTTGA 54888 .......... .......... .......... .......... .......... .......... 510 GAAAAAAGGA CACAGGAACA GAAAATGAAA CATGAAAATG ATACAGCGAA TCAGTGAAAT 54828 .......... .......... .......... .......... .......... .......... 510 AGTTTTTAGT TTTCATGGCT GTTTGACGAA TTGAGTAATT TGCCGGGAAT TGCTGGACTT 54768 .......... .......... .......... .......... .......... .......... 510 GAACTGTGAC ATTTTTTTTC CTTCACAAAA GACATGATTT GGAAGTTTTA TAACAAACCA 54708 .......... .......... .......... .......... .......... .......... 510 TGAGCATCTA CGTTCTATGG ATTTTAATTT CTTTTCTCAT CTCAAAGAAA CAAAAACAAG 54648 ||| ||||||| .......... .......... .......... .......... .......AAA CAAAAAC... 520 ATATAAGAAA AAGAGAGCAA AACACTAGAA AACACTTCAA TGCAGCTTCA AAACTCCTTT 54588 .......... .......... .......... .......... .......... .......... 520 TGGTATTCAG GATCTAAGAG ACATTAACTT TGTCAACTGC CTCTTGTGAA AAATTGATAT 54528 .......... .......... .......... .......... .......... .......... 520 GTGTCATTAT CTTTCTGTTT TGTTATTCTG TTGTGGAATT TGGTGTTGTT TCTGCCATGA 54468 .......... .......... .......... .......... .......... .......... 520 TGCAATCTTG ATGTTAATTA CTAGCATGAA ATGAATGTGA TGCAGCATTT AAGTAGACGG 54408 .......... .......... .......... .......... .......... .......... 520 AAGAGGGATC AAAGAGGGAG CCTTCTGGTT AGCTTAAAGG ATTGCCTATC GAAATCATTT 54348 .......... .......... .......... .......... .......... .......... 520 AGACAGTTAT GCTCTTTAGG GTGTTCATTG GAAGTGGTAG TTACCCACGA TGTTTTCCAA 54288 .......... .......... .......... .......... .......... .......... 520 CTTGTAGAGT TTCTCCATAT TGAGCTATTA ATAGTGTTTA AGTTTATCAA GTTAGTTCTC 54228 .......... .......... .......... .......... .......... .......... 520 TGGGGAGATA ATCAGATTCT ACAGTAACCT ATTACATAAA GCATTATCTT AAATGTGGAT 54168 .......... .......... .......... .......... .......... .......... 520 AAGCAAGATA ACATAGCGTA GAACAATTAA TTAACATATT AACATTGTTT ATGCATAGAA 54108 .......... .......... .......... .......... .......... .......... 520 TCCCAAAAGA ACAGTTCTCT TCCAATACAC ATTAAATAAA ACCAAAACCA AAAATAAATT 54048 .......... .......... .......... .......... .......... .......... 520 ATACATTGAA AAATCAAACC CAAAAAAATA AAAAAAATTG AATGCTGAAA TAATCAGTTA 53988 | | .......... .......... .......... .......... .......... .......TAA 523 AGTGACAGAA ACTT 53974 |||| | || |||| AGTG-CCGAT ACTT 536 hqPGS_C04HBa0127E11.1-_SGN-E398306- (56489 56263) ******************************************************************************** EST sequence 78 +strand 619 n (File: SGN-E329078+) 1 GTCGCCGATA ATCAGTGGAT TTTCACCTAT TTGAGGGTGT ACTTTGAGGA AGGTGAATGC 61 TCAAATTCGT CATTCTTTTT AGTGGAAAAA TACATCTCGA GATGATGGAA ATTGAAATTG 121 CGTCCCTTTA CCACTACGTA TAAGCTGGTC AAGCTGATTT TGAGTTGTTT TCGGTACAAC 181 TTTTAGCTTG AATATTCTGA GTGTCCTCCT TTCTCTCGAC TGAGTAGCTT TTACTCTACA 241 AGAAATTCAT CTGCTAGAGT AGTTCTGCAA AAGAAAAGCA ATCAAAATAA TGGATGATCG 301 GGTTGTTCTT GACAAGGGTG GAACAAGGAA GTTGCCTCAG TGGATGTTTG CTACATCTGC 361 TGCTGATCAA GTAAAGGAAA AAGCCAAAAC TGATAAAGTA GACAATAATA ATACTACAGA 421 GAAGGAGATT GTCACTCAGA AACAGAAAAA TAGAAGGATT AAGGATAAAA AGGAAACATT 481 CACTGAGGAG TCGTCCACTC AGCTTCCAAT ATGCCAAACA ACAAAAAGAA GCAGAAGAAA 541 ATTAAACCTA CCAAATGATT ATTGTAATGA TGAAAGCACT TCAATGCGGA GTGAATGTGA 601 CAGCAAGCAA GCAAGTGGT Predicted gene structure (within gDNA segment 61016 to 56486): Exon 1 60416 60382 ( 35 n); cDNA 1 35 ( 35 n); score: 1.000 Intron 1 60381 57680 (2702 n); Pd: 1.000 (s: 0), Pa: 0.947 (s: 1.00) Exon 2 57679 57096 ( 584 n); cDNA 36 619 ( 584 n); score: 0.998 MATCH C04HBa0127E11.1- SGN-E329078+ 0.998 619 1.000 C PGS_C04HBa0127E11.1-_SGN-E329078+ (60416 60382,57679 57096) Alignment (genomic DNA sequence = upper lines): GTCGCCGATA ATCAGTGGAT TTTCACCTAT TTGAGGTAAG AATCGAACCC CATAGCTGTG 60357 |||||||||| |||||||||| |||||||||| ||||| GTCGCCGATA ATCAGTGGAT TTTCACCTAT TTGAG..... .......... .......... 35 AATTTAGCTT ATAATCTTCA TATATATGAA GTACAGTTGA ATTAGGGATG AAATTGTGAC 60297 .......... .......... .......... .......... .......... .......... 35 GGGATAACTT TGGTAATTGT GGGTTTTCAT TTCAAGCATA TTTAATTGTA TTTTGTTGTC 60237 .......... .......... .......... .......... .......... .......... 35 CGATTGATAT GCAAATCGAG TGTAAAGTTT CTGTTAGCTT ATCATACCAT TGTCTACTTG 60177 .......... .......... .......... .......... .......... .......... 35 TCTGTTTTAA GCCATACGGA CACTTTTTGA GTCTCCACAC TAGTCATGGA GCATCCACTT 60117 .......... .......... .......... .......... .......... .......... 35 AGACTTCTCC ATGCAAGTTT CCATGGGGAA CGCATTATTG ACATCTAGTT CCACTCGATG 60057 .......... .......... .......... .......... .......... .......... 35 TACGGAGTCT ACCTTGGAGA TCCGATTAAA TTCGGATGAC ACACGACAAG GTCCACTTAG 59997 .......... .......... .......... .......... .......... .......... 35 AGGTGGCGCT CCCAACAAGA TTTTTCTCTA TAGCTAGGGC TTGAAGGAGA CCTCTGGATA 59937 .......... .......... .......... .......... .......... .......... 35 AGGGTGAAAC ACTCCCACCA GTACACCACA ACCCATGTTG GTTATTGACA TCTATTTGAT 59877 .......... .......... .......... .......... .......... .......... 35 AAAGCTACTA TCCTTGTTTG ACAACTACAT TGATTAAAGT CTCCACAATG GTCAAGATGA 59817 .......... .......... .......... .......... .......... .......... 35 CCATTGGTGA AAATGTTTCA ATGTAGTCAA GTGTACCCTT TGCCCACCAA CCTAGCCTTG 59757 .......... .......... .......... .......... .......... .......... 35 AACCTTGCTA CACTTCCATG TCCGCTGTGT TTGATCTTGT AAACCCACCT ACAACCCATT 59697 .......... .......... .......... .......... .......... .......... 35 GCCTTCTTTC CTGCAGGTAG ATTAGCCGAA TGCTAAGTTT GGTTAGCATA TAAAGTCTAA 59637 .......... .......... .......... .......... .......... .......... 35 AATTACCGTG TCATGGTTGG TTGCCATGCA GGATTCATAG CTACTCTCTC ATAGTAATTA 59577 .......... .......... .......... .......... .......... .......... 35 GGTTCTCTTA TCATAAGAAA TGTTTTGCAT AACCGGCTGG CTATCAGGAT CCAGTGAGAT 59517 .......... .......... .......... .......... .......... .......... 35 GAGGGGAATT TTTCCAGTGT TGGTGAAAAG GGCACTGAGA GATGGAGAAG GTTCTTAGAC 59457 .......... .......... .......... .......... .......... .......... 35 CTGGTCTTTC AGAAGGGGAA GATAATAGAC AAATTCCATC AAATGAGGTG GGGTATTGTG 59397 .......... .......... .......... .......... .......... .......... 35 GATCCTACAT CCTAGAGTAT CTCCTAGGAG CAGGTATGTC TAAGTGGCTA CTAGAAGTGG 59337 .......... .......... .......... .......... .......... .......... 35 ATGGTGGCAA GGTCTTATCA AAGAAGGATG ATTGATGAGG TTGATAGGAT GATAGACTTT 59277 .......... .......... .......... .......... .......... .......... 35 GATCTGCAAG TAAAGGAGCG TATCGGTAGG ACTGGCAGTG TGAAGTATCA ATCTGTTAGA 59217 .......... .......... .......... .......... .......... .......... 35 GTCAAGAGGA GCAGTAACAG AAGGTGGAGT GTTCTTGGTG TGCAATTGAC ATTCATCTAA 59157 .......... .......... .......... .......... .......... .......... 35 AGTATGTAAT TCTGTATAAC ATTGATATCA CACATAGCTG TGGTCTTACA AGTATCACAC 59097 .......... .......... .......... .......... .......... .......... 35 ATTTAGACAA ACAATTATTC ATAGGTTGAG AGCTTCAAAA AAAATATTTC ATAGGTTGAG 59037 .......... .......... .......... .......... .......... .......... 35 AAAAAGCAAC AGGAACATAA AGTGAAACAT GACATGACTC AGTAAATTGG CACTTCGCGC 58977 .......... .......... .......... .......... .......... .......... 35 AGAGAAAGTA TATTATGAAG TTGGGTTTGA TGTCTAAATT CTGTGTTGCT TTATGGATTC 58917 .......... .......... .......... .......... .......... .......... 35 ATTTGACGAA TTGAGTAATT TTACTGGGAA TTGCTGGACT TGAACTGTGA CATTTTTTTT 58857 .......... .......... .......... .......... .......... .......... 35 CCTTCACAAA AAACATGATT TTGGAAGTTT TATTGTTAAC AGTGAGCATC TATGTTCTAT 58797 .......... .......... .......... .......... .......... .......... 35 GGATTTTAAT TTCTTTTCTC ATCCCAAAGA AATCAAAACA AGATATAAGA AAAAGAGAGC 58737 .......... .......... .......... .......... .......... .......... 35 AAAACAATAG AAAAAACTCC AACGCAGCTT CAAAACTTTT TTTTTTTTGG TATTCAGTAT 58677 .......... .......... .......... .......... .......... .......... 35 CTAAGTGACA TGTACTTTCT CAACTGACTC TTGTGAAAAA CTGATGTGTG ACATCTTTTT 58617 .......... .......... .......... .......... .......... .......... 35 TCTGTTTTGT TGGTATTTTG TAGTGGTATT TAGTGTCATT TATGTCATTG ATGCAATCTT 58557 .......... .......... .......... .......... .......... .......... 35 GATATTAATT ACTAGCATGA AATGAATGTG ACACATCATT TAATTAGACG GAAGATGGAT 58497 .......... .......... .......... .......... .......... .......... 35 TAAAGAGGAA GCCATCTGGA AGAAGGCCCT ATGTCGAAAA CATTTAAACA GTTACACTCT 58437 .......... .......... .......... .......... .......... .......... 35 TTAGTGTGTG TTCATCGGAA CTGGGGGTTA ACCATGATGT TTTCCAACTC GATGAGTTTC 58377 .......... .......... .......... .......... .......... .......... 35 TCCATATCGA GCAATTAATA GTCTTAATAA TCAGATTCAA CAGTAACATA TTACATAAAA 58317 .......... .......... .......... .......... .......... .......... 35 CATTATCTTA AATGTGGATA AGCAAGATAA CTTACCGCAG ACCAATTAAT TTATGTTAAC 58257 .......... .......... .......... .......... .......... .......... 35 ACTAGCATTT ATGCATAGAA TGCCAAAACC AATTCTCTTC AAACCAATTC CACACGCACA 58197 .......... .......... .......... .......... .......... .......... 35 AAAAGAAATT AAACACTACT GAAGACATTG ACTCTCTTTG GCAGCCCTGA AATAATCAGC 58137 .......... .......... .......... .......... .......... .......... 35 AAAGCGGCAG AAACCTGTTT AATGCTTTTA CAATCCAACT TCATTTATGC ATATGTCTTC 58077 .......... .......... .......... .......... .......... .......... 35 AAGTGCTTGT CAAAAATGGA TCAATAAAAG ACAGCTTCTT TTCCCGTTTT ACCCAAATTG 58017 .......... .......... .......... .......... .......... .......... 35 TAAGACACTT TTTAACATAA TAACTAGTAG TCAATAAAAA CGAAAAGATT TATCAATTAT 57957 .......... .......... .......... .......... .......... .......... 35 TTAAAATAAT GATTTAACTA TAATGTTCAA GGCATTATAG TTACATCTAA TTTTTTTTAT 57897 .......... .......... .......... .......... .......... .......... 35 AGATTATGTG GGGAAGGTAC AATCCTCAAA AATATTGTAC ATAGTTTTGA AAATTTTATA 57837 .......... .......... .......... .......... .......... .......... 35 ATTTCTCTTC AAAGTTATAT ATGTTATTAC TACTGATTCT TGTGTGCTTA CTGGTACCCG 57777 .......... .......... .......... .......... .......... .......... 35 CTTCATAAGG ACTTCCTATA ATATAAGCCC AAAGTTTGTG GTTGATGCTT AATCATGGGA 57717 .......... .......... .......... .......... .......... .......... 35 AAGAGGATTT ATTTTCTCCT TTTGTCTACT TTTACAGGGT GTACTTTGAG GAAGGTGAAT 57657 ||| |||||||||| |||||||||| .......... .......... .......... .......GGT GTACTTTGAG GAAGGTGAAT 58 GCTCAAATTC GTCATTCTTT TTAGTGGAAA AATACATCTC GAGATGATGG AAATTGAAAT 57597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAAATTC GTCATTCTTT TTAGTGGAAA AATACATCTC GAGATGATGG AAATTGAAAT 118 TGCGTCCCTT TACCACTACG TATAAGCTGG TCAAGCTGAT TTTGAGTTGT TTTCGGTACA 57537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGTCCCTT TACCACTACG TATAAGCTGG TCAAGCTGAT TTTGAGTTGT TTTCGGTACA 178 ACTTTTAGCT TGAATATTCT GAGTGTCCTC CTTTCTCTCG ACTGAGTAGC TTTTACTCTA 57477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTAGCT TGAATATTCT GAGTGTCCTC CTTTCTCTCG ACTGAGTAGC TTTTACTCTA 238 CAAGAAATTC ATCTGCTAGA GTAGTTCTGC AAAAGAAAAG CAATCAAAAT AATGGATGAT 57417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAAATTC ATCTGCTAGA GTAGTTCTGC AAAAGAAAAG CAATCAAAAT AATGGATGAT 298 CGGGTTGTTC TTGACAAGGG TGGAACAAGG AAGTTGCCTC AGTGGATGTT TGCTACATCT 57357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGTTGTTC TTGACAAGGG TGGAACAAGG AAGTTGCCTC AGTGGATGTT TGCTACATCT 358 GCTGCTGATC AAGTAAAGGA AAAAGCCAAA ACTGATAAAG TAGACAATAA TAATACTACA 57297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGATC AAGTAAAGGA AAAAGCCAAA ACTGATAAAG TAGACAATAA TAATACTACA 418 GAGAAGGAGA TTGTCACTCA GAAACAGAAA AATAGAAGGA TTAAGGATAA AAAGGAAACA 57237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGGAGA TTGTCACTCA GAAACAGAAA AATAGAAGGA TTAAGGATAA AAAGGAAACA 478 TTCACTGAGG AGTCGTCCAC TCAGCTTCCA ATATGCCAAA CAACAAAAAG AAGCAGAAGA 57177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACTGAGG AGTCGTCCAC TCAGCTTCCA ATATGCCAAA CAACAAAAAG AAGCAGAAGA 538 AAATTAAACC TACCAAATGA TTATTGTAAT GATGAAAGCA CTTCAATGGG GAGTGAATGT 57117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| AAATTAAACC TACCAAATGA TTATTGTAAT GATGAAAGCA CTTCAATGCG GAGTGAATGT 598 GACAGCAAGC AAGCAAGTGG T 57096 |||||||||| |||||||||| | GACAGCAAGC AAGCAAGTGG T 619 hqPGS_C04HBa0127E11.1-_SGN-E329078+ (60416 60382,57679 57096) ******************************************************************************** EST sequence 71 +strand 562 n (File: SGN-E271747+) 1 TACGTATAAG CTGGTCAAGC TGATTTTGAG TTGTTTTCGG TACAACTTTT AGCTTGAATA 61 TTCTGAGTGT CCTCCTTTCT CTCGACTGAG TAGCTTTTAC TCTACAAGAA ATTCATCTGC 121 TAGAGTAGTT CTGCAAAAGA AAAGCAATCA AAATAATGGA TGATCGGGTT GTTCTTGACA 181 AGGGTGGAAC AAGGAAGTTG CCTCAGTGGA TGTTTGCTAC ATCTGCTGCT GATCAAGTAA 241 AGGAAAAAGC CAAAACTGAT AAAGTAGACA ATAATAATAC TACAGAGAAG GAGATTGTCA 301 CTCAGAAACA GAAAAATAGA AGGATTAAGG ATAAAAAGGA AACATTCACT GAGGAGTCGT 361 CCACTCAGCT TCCAATATGC CAAACAACAA AAAGAAGCAG AAGAAAATTA AACCTACCAA 421 ATGATTATTG TAATGATGAA AGCACTTCAA TGGGGAGTGA ATGTGACAGC AAGCAAGCAA 481 GTGGTGATGG AGAGGTTCCT ATGTTGAGGA GACAGAAACA GAAAACGAAG AATTCCAAGA 541 CTGAGAGAGT TGCTGAGATG GA Predicted gene structure (within gDNA segment 58180 to 56409): Exon 1 57580 57019 ( 562 n); cDNA 1 562 ( 562 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E271747+ 1.000 562 1.000 C PGS_C04HBa0127E11.1-_SGN-E271747+ (57580 57019) Alignment (genomic DNA sequence = upper lines): TACGTATAAG CTGGTCAAGC TGATTTTGAG TTGTTTTCGG TACAACTTTT AGCTTGAATA 57521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGTATAAG CTGGTCAAGC TGATTTTGAG TTGTTTTCGG TACAACTTTT AGCTTGAATA 60 TTCTGAGTGT CCTCCTTTCT CTCGACTGAG TAGCTTTTAC TCTACAAGAA ATTCATCTGC 57461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGAGTGT CCTCCTTTCT CTCGACTGAG TAGCTTTTAC TCTACAAGAA ATTCATCTGC 120 TAGAGTAGTT CTGCAAAAGA AAAGCAATCA AAATAATGGA TGATCGGGTT GTTCTTGACA 57401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTAGTT CTGCAAAAGA AAAGCAATCA AAATAATGGA TGATCGGGTT GTTCTTGACA 180 AGGGTGGAAC AAGGAAGTTG CCTCAGTGGA TGTTTGCTAC ATCTGCTGCT GATCAAGTAA 57341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGGAAC AAGGAAGTTG CCTCAGTGGA TGTTTGCTAC ATCTGCTGCT GATCAAGTAA 240 AGGAAAAAGC CAAAACTGAT AAAGTAGACA ATAATAATAC TACAGAGAAG GAGATTGTCA 57281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAAAAGC CAAAACTGAT AAAGTAGACA ATAATAATAC TACAGAGAAG GAGATTGTCA 300 CTCAGAAACA GAAAAATAGA AGGATTAAGG ATAAAAAGGA AACATTCACT GAGGAGTCGT 57221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAAACA GAAAAATAGA AGGATTAAGG ATAAAAAGGA AACATTCACT GAGGAGTCGT 360 CCACTCAGCT TCCAATATGC CAAACAACAA AAAGAAGCAG AAGAAAATTA AACCTACCAA 57161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTCAGCT TCCAATATGC CAAACAACAA AAAGAAGCAG AAGAAAATTA AACCTACCAA 420 ATGATTATTG TAATGATGAA AGCACTTCAA TGGGGAGTGA ATGTGACAGC AAGCAAGCAA 57101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTATTG TAATGATGAA AGCACTTCAA TGGGGAGTGA ATGTGACAGC AAGCAAGCAA 480 GTGGTGATGG AGAGGTTCCT ATGTTGAGGA GACAGAAACA GAAAACGAAG AATTCCAAGA 57041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGATGG AGAGGTTCCT ATGTTGAGGA GACAGAAACA GAAAACGAAG AATTCCAAGA 540 CTGAGAGAGT TGCTGAGATG GA 57019 |||||||||| |||||||||| || CTGAGAGAGT TGCTGAGATG GA 562 hqPGS_C04HBa0127E11.1-_SGN-E271747+ (57580 57019) ******************************************************************************** EST sequence 69 +strand 532 n (File: SGN-E271623+) 1 TACGTATAAG CTGGTCAAGC TGATTTTGAG TTGTTTTCGG TACAACTTTT AGCTTGAATA 61 TTCTGAGTGT CCTCCTTTCT CTCGACTGAG TAGCTTTTAC TCTACAAGAA ATTCATCTGC 121 TAGAGTAGTT CTGCAAAAGA AAAGCAATCA AAATAATGGA TGATCGGGTT GTTCTTGACA 181 AGGGTGGAAC AAGGAAGTTG CCTCAGTGGA TGTTTGCTAC ATCTGCTGCT GATCAAGTAA 241 AGGAAAAAGC CAAAACTGAT AAAGTAGACA ATAATAATAC TACAGAGAAG GAGATTGTCA 301 CTCAGAAACA GAAAAATAGA AGGATTAAGG ATAAAAAGGA AACATTCACT GAGGAGTCGT 361 CCACTCAGCT TCCAATATGC CAAACAACAA AAAGAAGCAG AAGAAAATTA AACCTACCAA 421 ATGATTATTG TAATGATGAA AGCACTTCAA TGGGGAGTGA ATGTGACAGC AAGCAAGCAA 481 GTGGTGATGG AGAGGTTCCT ATGTTGAGGA GACAGAAACA GAAAACGAAG AA Predicted gene structure (within gDNA segment 58180 to 56439): Exon 1 57580 57049 ( 532 n); cDNA 1 532 ( 532 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E271623+ 1.000 532 1.000 C PGS_C04HBa0127E11.1-_SGN-E271623+ (57580 57049) Alignment (genomic DNA sequence = upper lines): TACGTATAAG CTGGTCAAGC TGATTTTGAG TTGTTTTCGG TACAACTTTT AGCTTGAATA 57521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGTATAAG CTGGTCAAGC TGATTTTGAG TTGTTTTCGG TACAACTTTT AGCTTGAATA 60 TTCTGAGTGT CCTCCTTTCT CTCGACTGAG TAGCTTTTAC TCTACAAGAA ATTCATCTGC 57461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGAGTGT CCTCCTTTCT CTCGACTGAG TAGCTTTTAC TCTACAAGAA ATTCATCTGC 120 TAGAGTAGTT CTGCAAAAGA AAAGCAATCA AAATAATGGA TGATCGGGTT GTTCTTGACA 57401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTAGTT CTGCAAAAGA AAAGCAATCA AAATAATGGA TGATCGGGTT GTTCTTGACA 180 AGGGTGGAAC AAGGAAGTTG CCTCAGTGGA TGTTTGCTAC ATCTGCTGCT GATCAAGTAA 57341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGGAAC AAGGAAGTTG CCTCAGTGGA TGTTTGCTAC ATCTGCTGCT GATCAAGTAA 240 AGGAAAAAGC CAAAACTGAT AAAGTAGACA ATAATAATAC TACAGAGAAG GAGATTGTCA 57281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAAAAGC CAAAACTGAT AAAGTAGACA ATAATAATAC TACAGAGAAG GAGATTGTCA 300 CTCAGAAACA GAAAAATAGA AGGATTAAGG ATAAAAAGGA AACATTCACT GAGGAGTCGT 57221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAAACA GAAAAATAGA AGGATTAAGG ATAAAAAGGA AACATTCACT GAGGAGTCGT 360 CCACTCAGCT TCCAATATGC CAAACAACAA AAAGAAGCAG AAGAAAATTA AACCTACCAA 57161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTCAGCT TCCAATATGC CAAACAACAA AAAGAAGCAG AAGAAAATTA AACCTACCAA 420 ATGATTATTG TAATGATGAA AGCACTTCAA TGGGGAGTGA ATGTGACAGC AAGCAAGCAA 57101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTATTG TAATGATGAA AGCACTTCAA TGGGGAGTGA ATGTGACAGC AAGCAAGCAA 480 GTGGTGATGG AGAGGTTCCT ATGTTGAGGA GACAGAAACA GAAAACGAAG AA 57049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GTGGTGATGG AGAGGTTCCT ATGTTGAGGA GACAGAAACA GAAAACGAAG AA 532 hqPGS_C04HBa0127E11.1-_SGN-E271623+ (57580 57049) ******************************************************************************** EST sequence 11 +strand 753 n (File: SGN-E539888+) 1 TCGTTATCGA GGGGGGTAAC GGGGGTAGTG GTCTCCAAAT GCCGGCGAAT TATGGGGACT 61 ATTTCATTGG ACCGGGGTTT GAGCAATTGA TCCAGAATTT GGCAGAAAAT GATCCAAACC 121 GATATGGGAC TCCTCCGGCG TCGAGAGCAG CGGTGGAGGG GCTCCCTACC ATCAAAGTTG 181 ATGAGGAATT GATGCGTTCT GAACTGGCAC AGTGTGCTGT TTGTAAGGAT GATTTTGAGA 241 TGGGGTCAGA TGTGATACAG ATGCCTTGTA AGCATGTTTA TCATAAGGAT TGTATCATAC 301 CGTGGCTTGA GTTGCACAGT TCTTGCCCGG TTTGTCGCTA TGAGTTGCCA ACGGATGAGC 361 CTGAGAATGA GAACAGGCAA AGAGACAATG ATGGGGACTC GAGCGGGGAT GGTTCTGCTT 421 CTGGAAGTGG GGGATCAGGG AGAAGGTTTA CTACAATATC ATTGCCATGG CCTTTGGGAA 481 GCTTTGGAGC ATCATCTAGC CAGGGATGAT CCGAGTCTCG TGGGCAGCGG AACAGGGAGT 541 CTAATTAGGT GGTATCCTTG CTTGCAGGTT GTATCATGGA TGACAAAGTT GGAGGAGTTG 601 TTGGGTAGAT AATTAGAAAA TGCTACAAAG GTAAAGGATT ANGTTTCATC TCTTAAACAT 661 AGATACAGGG TCTACACAAA CCCCAGATAG TATTGCAAGA TGTTTGTCTG AATGTTTTGC 721 ATCAGATGTC CAAAGTTTTC ATTTATGCTT CAT Predicted gene structure (within gDNA segment 62936 to 68537): Exon 1 63536 64083 ( 548 n); cDNA 1 548 ( 548 n); score: 1.000 Intron 1 64084 67721 (3638 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 67722 67927 ( 206 n); cDNA 549 753 ( 205 n); score: 0.990 MATCH C04HBa0127E11.1+ SGN-E539888+ 0.997 754 1.001 C PGS_C04HBa0127E11.1+_SGN-E539888+ (63536 64083,67722 67927) Alignment (genomic DNA sequence = upper lines): TCGTTATCGA GGGGGGTAAC GGGGGTAGTG GTCTCCAAAT GCCGGCGAAT TATGGGGACT 63595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTATCGA GGGGGGTAAC GGGGGTAGTG GTCTCCAAAT GCCGGCGAAT TATGGGGACT 60 ATTTCATTGG ACCGGGGTTT GAGCAATTGA TCCAGAATTT GGCAGAAAAT GATCCAAACC 63655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCATTGG ACCGGGGTTT GAGCAATTGA TCCAGAATTT GGCAGAAAAT GATCCAAACC 120 GATATGGGAC TCCTCCGGCG TCGAGAGCAG CGGTGGAGGG GCTCCCTACC ATCAAAGTTG 63715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGGGAC TCCTCCGGCG TCGAGAGCAG CGGTGGAGGG GCTCCCTACC ATCAAAGTTG 180 ATGAGGAATT GATGCGTTCT GAACTGGCAC AGTGTGCTGT TTGTAAGGAT GATTTTGAGA 63775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGGAATT GATGCGTTCT GAACTGGCAC AGTGTGCTGT TTGTAAGGAT GATTTTGAGA 240 TGGGGTCAGA TGTGATACAG ATGCCTTGTA AGCATGTTTA TCATAAGGAT TGTATCATAC 63835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGTCAGA TGTGATACAG ATGCCTTGTA AGCATGTTTA TCATAAGGAT TGTATCATAC 300 CGTGGCTTGA GTTGCACAGT TCTTGCCCGG TTTGTCGCTA TGAGTTGCCA ACGGATGAGC 63895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGCTTGA GTTGCACAGT TCTTGCCCGG TTTGTCGCTA TGAGTTGCCA ACGGATGAGC 360 CTGAGAATGA GAACAGGCAA AGAGACAATG ATGGGGACTC GAGCGGGGAT GGTTCTGCTT 63955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGAATGA GAACAGGCAA AGAGACAATG ATGGGGACTC GAGCGGGGAT GGTTCTGCTT 420 CTGGAAGTGG GGGATCAGGG AGAAGGTTTA CTACAATATC ATTGCCATGG CCTTTGGGAA 64015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAAGTGG GGGATCAGGG AGAAGGTTTA CTACAATATC ATTGCCATGG CCTTTGGGAA 480 GCTTTGGAGC ATCATCTAGC CAGGGATGAT CCGAGTCTCG TGGGCAGCGG AACAGGGAGT 64075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTGGAGC ATCATCTAGC CAGGGATGAT CCGAGTCTCG TGGGCAGCGG AACAGGGAGT 540 CTAATTAGGT AGAGATATAC AAACCATAAT CGTCTTAATT TGATTGTTCA ATTCATTTGA 64135 |||||||| CTAATTAG.. .......... .......... .......... .......... .......... 548 TTCAAATTTA TACACGTGAC TTGCTGATCG AAGCTAAAAT TGTACTTGTT CATCGATTTT 64195 .......... .......... .......... .......... .......... .......... 548 TGTGACTATC TGTTATTTCG TGTAGTTTGT TTGTAGTATT ACTTTGTTGT AGTACTATTA 64255 .......... .......... .......... .......... .......... .......... 548 TGTTCCTACT TGTTGTTTTG TTACTTTGTA TTGTTGATTG TACTTTCAGT ATTTGTTATC 64315 .......... .......... .......... .......... .......... .......... 548 GTACTATTTT GACTTGAGCC GGGGGTCTAT CTGAAACGGC CTCTTTATCT CATCTCTAGG 64375 .......... .......... .......... .......... .......... .......... 548 TAGATATAAG GTTCCGTACA CTCTAACGTC CCATACCCCA CTGTGGGATT ACACTGGATA 64435 .......... .......... .......... .......... .......... .......... 548 TGTTGTAGTT GTTGTACTCT TAGTTGCGCG GACTCTTCAC TTTTGATGTC GCACCTGTCT 64495 .......... .......... .......... .......... .......... .......... 548 CGGATTCTTC AAAATACACT ACTTTTGACG AATTCGACAT GCACCTGTTC GCATTTTTGA 64555 .......... .......... .......... .......... .......... .......... 548 AGAGTCCATG CAACATAGGT TGTACTTGAC GTCAGGAGTT GATATACCCA AAGTTCTGGT 64615 .......... .......... .......... .......... .......... .......... 548 AAATATAAGG AATTCTAGAC TAGGAAATGG GATTAACTGT GGTTATGCAT TTTACTAGGT 64675 .......... .......... .......... .......... .......... .......... 548 AGTTGGAATG TCCTTAACTG TGTTCATGGG ACATCTTAAT CAATCAGCTG TGCCTAATTC 64735 .......... .......... .......... .......... .......... .......... 548 CGAAACTGTT GAGCTCAGTT GTATTCGCTG GCTCGATTTA GGTCCACTTC TACGTCCATG 64795 .......... .......... .......... .......... .......... .......... 548 TTTGATGTTC AGTGTCTAGC TGGTCCTTAC GTGAACCCGA TGAGGTACTT GCTATAAAGG 64855 .......... .......... .......... .......... .......... .......... 548 GACCTGAAGA CTGATTCATA TTTCAAGTTC ATTGGAGATG TGTTTAACAA CTGTTCGATT 64915 .......... .......... .......... .......... .......... .......... 548 TCTTCAGTTT TGTATTTTCA CAAGTCCTCG GACATGTGCG ACCATGCTGA TTAATATAAA 64975 .......... .......... .......... .......... .......... .......... 548 CATTTAAAAA TGATTTCAAT AAGGTTACAA TATGTATGTG ATGAGTTGCA CAAAATTAGA 65035 .......... .......... .......... .......... .......... .......... 548 ATGGGAAAAT GATCGCACAT TTTTTATGGG CATTCTGCTT AGATTGTAAT TCCCACTTAA 65095 .......... .......... .......... .......... .......... .......... 548 TCAACTTAAA TAATAGAATT ATAATGATAG CCTGTTCATT CAGTGGAAGA TCTAGGATTT 65155 .......... .......... .......... .......... .......... .......... 548 GAAGATGGTG GGTGCTCATT TTCTTTAAGA TAAAGTTGCT AACCTAGAAG GGTTACTTTC 65215 .......... .......... .......... .......... .......... .......... 548 TGGAAGCTTT GTAATGTTTT TATAGTTTAG TTAGTTAATG AAAGACAAAT ACATAATTGG 65275 .......... .......... .......... .......... .......... .......... 548 AAACAAGAAA GAAAAAATGA GCAAAAAAGA ATCAGCAGCT AAAGTATACG TATGAAGTAG 65335 .......... .......... .......... .......... .......... .......... 548 TTCTGTTTCC TTTTTTCCAC CAAAAAAAGA TTAATAGTTA GCACCTACTA GGATTCGAAC 65395 .......... .......... .......... .......... .......... .......... 548 CCTCAACAGA ACCCATCAGT GCACTCTTAT TTCAACTCTA GAACCAAAGC ACCCATAAGA 65455 .......... .......... .......... .......... .......... .......... 548 ACTTTTGGTT TTTGTCTGCT CGCGAGTAGA TTATATTAGT TTTACAGATT TTCTTTATAT 65515 .......... .......... .......... .......... .......... .......... 548 ATACACAAAA TTCTCATCGG GGGCAATGGG GGCTCGAGCA CCGATAAACT ACACGTGTAG 65575 .......... .......... .......... .......... .......... .......... 548 TGGGTGTGTC CCTGTGTTCA TTTGCTTTTG AAGATAGATT AACGGAATCT CTTTTCTTTC 65635 .......... .......... .......... .......... .......... .......... 548 TTTCAAATTT GCACTTTATT TAAAGAGTAT ATTAAGGATA GGAAGAGACA TTATTATCAT 65695 .......... .......... .......... .......... .......... .......... 548 TTTTAATTAT AAAATATCTT TTTCCTAGTT TGCCACGTCC CAAAAAAAAA TCTTTCCTTG 65755 .......... .......... .......... .......... .......... .......... 548 CTTTATGTTA CATTAATTGA ATACATTTAC CATCCTCTTT AGTCGTTAAT ATATAACCCA 65815 .......... .......... .......... .......... .......... .......... 548 TAGATACACT TGCACACACG TTCCACAATA TATAATTTAA CTCTCATTTA ATTATGCAAA 65875 .......... .......... .......... .......... .......... .......... 548 ATGTTCATAT TTAATGGAGT AGCCTTAATT GTGAAAATAT AATGTGTTCA CATTTTGTAC 65935 .......... .......... .......... .......... .......... .......... 548 AAGAACATTA TTGCAATAGT TTTTAAGGGG TGAAATAATC TTTCAACTTT TAACTTTGGG 65995 .......... .......... .......... .......... .......... .......... 548 GCTTCCACTT ATGGAATAGT GTGGTGATTA ATCCCATATA TGCTTGTATT CTATGCATAG 66055 .......... .......... .......... .......... .......... .......... 548 ACCAACTGAT AAAGTTATTA GCATATGTAG ATATGTAGCA CAACCTAAGT TGCTTTGACT 66115 .......... .......... .......... .......... .......... .......... 548 CTTCGCTTTC GGTGCCAAAA CCGTGTCGAG ACGACATGGG CGTGGGTCTG GGCTGGGATA 66175 .......... .......... .......... .......... .......... .......... 548 AGTACCTGAT CTGGTCAACT AGGTTTGGGT ACTTTGACCA AATTCGAGGG AAATTTTTTG 66235 .......... .......... .......... .......... .......... .......... 548 GATAGATCCA ATGATTTCTG TCCCTTTTCT TTTATCTCAT TCCAAGATTC TCCTCTTGAT 66295 .......... .......... .......... .......... .......... .......... 548 CATTATTCAC TCCTTGAGTT TTCCACATAA TATCTCATTA TTTTGGTTTT ATAACTCTTA 66355 .......... .......... .......... .......... .......... .......... 548 TGTTTAGCCA AATCCCCGCA CCCTGTATCC ACACATGGAT CCGTATCCCC GAACTTAAAA 66415 .......... .......... .......... .......... .......... .......... 548 ATTTAGGTCA TAGAGGATCT GATCTCTAGA TCTGCACCCT TATCGGATAC CCGCACCCGA 66475 .......... .......... .......... .......... .......... .......... 548 GCGACTTAGA GTGCAACTAC TATTAATTGC TGGACAAACT TTCTCACTCT ACATGTGTGA 66535 .......... .......... .......... .......... .......... .......... 548 TTTTGAACTG CATGTGTAGT TGTTAAATGT CTTTGCAGAT AACGTTCAGT GGCAGAACTA 66595 .......... .......... .......... .......... .......... .......... 548 GTATTTAGTT TATGCTTGTA TGTTGATAAC TGTGCGACTA CAAGGGCATT TTACAACATA 66655 .......... .......... .......... .......... .......... .......... 548 ACACATGTTC TATTTGTATG AAATTATTTG CATTTGTCTT TATATGTACA TGCAAATACT 66715 .......... .......... .......... .......... .......... .......... 548 TAGCCATCAC AATGTGTATG ATGCCATTTC TGGAAACAAG GGACCAAATC TATAAAATTG 66775 .......... .......... .......... .......... .......... .......... 548 GTCAAATGTT GGAAAGAGGA GGTTATCCCG GTATTTTTAT CCGTGGAAAG CCCAGAAAAG 66835 .......... .......... .......... .......... .......... .......... 548 TGACCGACTA GAGCAGGGCC CTATTGATAA ATGTAAGGAA GTGTTTATGA GCCCTAGCAA 66895 .......... .......... .......... .......... .......... .......... 548 AAGCCGTAGC CCTTTAATTG TGTCGGGGAA TCGGCCTTCT TTAGTCAAAG GATCTAATTC 66955 .......... .......... .......... .......... .......... .......... 548 CCATGTATTT CCAAGGTTAT TGATGGTAGA GTTATTGCAA CTTATGCCTT TGTTGAGCTC 67015 .......... .......... .......... .......... .......... .......... 548 TTAGATGCGA GATTGTACAT CTTGTCAGTC TTCTTCATTT TGTGCACTTT GCTGGTTTTT 67075 .......... .......... .......... .......... .......... .......... 548 GGTTTGTGAT GGCTTTTAAT GATGTTTCAC CATTGAATTC TAAAGTTTTA TATGGGTCAA 67135 .......... .......... .......... .......... .......... .......... 548 ATAGGCAGGT TGGACTAAAT TTGGGTGGGT TAAGCAGGTT GGATCAGTAA GCAAATTGGT 67195 .......... .......... .......... .......... .......... .......... 548 CATAGCCAAT TTATCATATC TAATCTCCCT TTCAATTTTA AGGATTTCAT GAATGATGTC 67255 .......... .......... .......... .......... .......... .......... 548 ACTCAATTGC TCTGCTGATC TTCCTTCTGG ATGCTCTTGA GAAGTAGTTG AAAATGTTGC 67315 .......... .......... .......... .......... .......... .......... 548 ATTAGATTGT AAATAGTCCA AAAGTAGTTC CACTTCTTGC TAGATTCCTT GGTCCTTGGG 67375 .......... .......... .......... .......... .......... .......... 548 GTGAAATAGG ACACACTTTT GCCTTTTGCT CCTTCTTGAT GTATGTATCT CACACCTACA 67435 .......... .......... .......... .......... .......... .......... 548 TAGTACTGTA AACATCTATG TAGTATCTTT TCTGATGAAA AGAAATGGTA CTACTTCTTG 67495 .......... .......... .......... .......... .......... .......... 548 ATCTTTCTCT TGTAAAGTAA TAATTAGGTA ATATTTCATG CTCTTTATTG GTACTTCTGT 67555 .......... .......... .......... .......... .......... .......... 548 TTGATGTTCT ATGTTATGTT GATCATACAC TTCAATTGTC AACTCTTTCC TACATTCATT 67615 .......... .......... .......... .......... .......... .......... 548 GCTGACATCC AGAGATGTTA CAAATTTGAT TTTGATTTCG TAGATACAAA CATGGTATAC 67675 .......... .......... .......... .......... .......... .......... 548 CACTTTGAAA TGTATTTTGA TCATTAATGA TTTCTCTGTT TTACAGGTGG TATCCTTGCT 67735 |||| |||||||||| .......... .......... .......... .......... ......GTGG TATCCTTGCT 562 TGCAGGTTGT ATCATGGATG ACAAAGTTGG AGGAGTTGTT GGGTAGATAA TTAGAAAATG 67795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGGTTGT ATCATGGATG ACAAAGTTGG AGGAGTTGTT GGGTAGATAA TTAGAAAATG 622 CTACAAAGGT AAAGGATTAG GTTTCATCTC TTAAAACATA GATACAGGGT CTACACAAAC 67855 |||||||||| ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CTACAAAGGT AAAGGATTAN GTTTCATCTC TT-AAACATA GATACAGGGT CTACACAAAC 681 CCCAGATAGT ATTGCAAGAT GTTTGTCTGA ATGTTTTGCA TCAGATGTCC AAAGTTTTCA 67915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGATAGT ATTGCAAGAT GTTTGTCTGA ATGTTTTGCA TCAGATGTCC AAAGTTTTCA 741 TTTATGCTTC AT 67927 |||||||||| || TTTATGCTTC AT 753 hqPGS_C04HBa0127E11.1+_SGN-E539888+ (63536 64083,67722 67927) ******************************************************************************** EST sequence 72 -strand 803 n (File: SGN-E539885-) 1 GGGTAACGGG GGTAGTGGTC TCCAAATGCC GGCGAATTAT GGGGACTATT TCATTGGACC 61 GGGGTTTGAG CAATTGATCC AGAATTTGGC AGAAAATGAT CCAAACCGAT ATGGGACTCC 121 TCCGGCGTCG AGAGCAGCGG TGGAGGGGCT CCCTACCATC AAAGTTGATG AGGAATTGAT 181 GCGTTCTGAA CTGGCACAGT GTGCTGTTTG TAAGGATGAT TTTGAGATGG GGTCAGATGT 241 GATACAGATG CCTTGTAAGC ATGTTTATCA TAAGGATTGT ATCATACCGT GGCTTGAGTT 301 GCACAGTTCT TGCCCGGTTT GTCGCTATGA GTTGCCAACG GATGAGCCTG AGAATGAGAA 361 CAGGCAAAGA GACAATGATG GGGACTCGAG CGGGGATGGT TCTGCTTCTG GAAGTGGGGG 421 ATCAGGGAGA AGGTTTACTA CAATATCATT GCCATGGCCT TTGGGAAGCT TTGGAGCATC 481 ATCTAGCCAG GGATGATCCG AGTCTCGTGG GCAGCGGAAC AGGGAGTCTA ATTAGGTGGT 541 ATCCTTGCTT GCAGGTTGTA TCATGGATGA CAAAGTTGGA GGAGTTGTTG GGTAGATAAT 601 TAGAAAATGC TACAAAGGTA AAGGATTAGG TTTCATCTCT TAAAACATAG ATACAGGGTC 661 TACACAAACC CCAGATAGTA TTGCAAGATG TTTGTCTGAA TGTTTTGCAT CAGATGTCCA 721 AAGTTTTCAT TTATGCTTCA TCAATCGCGA ATTTTGCGGA TTGTTTTAGT CCTTGTGCAG 781 TTGATCTGGA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 62939 to 68715): Exon 1 63549 64083 ( 535 n); cDNA 1 535 ( 535 n); score: 1.000 Intron 1 64084 67721 (3638 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 67722 67974 ( 253 n); cDNA 536 788 ( 253 n); score: 1.000 PPA cDNA 790 803 MATCH C04HBa0127E11.1+ SGN-E539885- 1.000 788 0.981 C PGS_C04HBa0127E11.1+_SGN-E539885- (63549 64083,67722 67974) Alignment (genomic DNA sequence = upper lines): GGGTAACGGG GGTAGTGGTC TCCAAATGCC GGCGAATTAT GGGGACTATT TCATTGGACC 63608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTAACGGG GGTAGTGGTC TCCAAATGCC GGCGAATTAT GGGGACTATT TCATTGGACC 60 GGGGTTTGAG CAATTGATCC AGAATTTGGC AGAAAATGAT CCAAACCGAT ATGGGACTCC 63668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTTGAG CAATTGATCC AGAATTTGGC AGAAAATGAT CCAAACCGAT ATGGGACTCC 120 TCCGGCGTCG AGAGCAGCGG TGGAGGGGCT CCCTACCATC AAAGTTGATG AGGAATTGAT 63728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGCGTCG AGAGCAGCGG TGGAGGGGCT CCCTACCATC AAAGTTGATG AGGAATTGAT 180 GCGTTCTGAA CTGGCACAGT GTGCTGTTTG TAAGGATGAT TTTGAGATGG GGTCAGATGT 63788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTTCTGAA CTGGCACAGT GTGCTGTTTG TAAGGATGAT TTTGAGATGG GGTCAGATGT 240 GATACAGATG CCTTGTAAGC ATGTTTATCA TAAGGATTGT ATCATACCGT GGCTTGAGTT 63848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACAGATG CCTTGTAAGC ATGTTTATCA TAAGGATTGT ATCATACCGT GGCTTGAGTT 300 GCACAGTTCT TGCCCGGTTT GTCGCTATGA GTTGCCAACG GATGAGCCTG AGAATGAGAA 63908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAGTTCT TGCCCGGTTT GTCGCTATGA GTTGCCAACG GATGAGCCTG AGAATGAGAA 360 CAGGCAAAGA GACAATGATG GGGACTCGAG CGGGGATGGT TCTGCTTCTG GAAGTGGGGG 63968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGCAAAGA GACAATGATG GGGACTCGAG CGGGGATGGT TCTGCTTCTG GAAGTGGGGG 420 ATCAGGGAGA AGGTTTACTA CAATATCATT GCCATGGCCT TTGGGAAGCT TTGGAGCATC 64028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGGAGA AGGTTTACTA CAATATCATT GCCATGGCCT TTGGGAAGCT TTGGAGCATC 480 ATCTAGCCAG GGATGATCCG AGTCTCGTGG GCAGCGGAAC AGGGAGTCTA ATTAGGTAGA 64088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATCTAGCCAG GGATGATCCG AGTCTCGTGG GCAGCGGAAC AGGGAGTCTA ATTAG..... 535 GATATACAAA CCATAATCGT CTTAATTTGA TTGTTCAATT CATTTGATTC AAATTTATAC 64148 .......... .......... .......... .......... .......... .......... 535 ACGTGACTTG CTGATCGAAG CTAAAATTGT ACTTGTTCAT CGATTTTTGT GACTATCTGT 64208 .......... .......... .......... .......... .......... .......... 535 TATTTCGTGT AGTTTGTTTG TAGTATTACT TTGTTGTAGT ACTATTATGT TCCTACTTGT 64268 .......... .......... .......... .......... .......... .......... 535 TGTTTTGTTA CTTTGTATTG TTGATTGTAC TTTCAGTATT TGTTATCGTA CTATTTTGAC 64328 .......... .......... .......... .......... .......... .......... 535 TTGAGCCGGG GGTCTATCTG AAACGGCCTC TTTATCTCAT CTCTAGGTAG ATATAAGGTT 64388 .......... .......... .......... .......... .......... .......... 535 CCGTACACTC TAACGTCCCA TACCCCACTG TGGGATTACA CTGGATATGT TGTAGTTGTT 64448 .......... .......... .......... .......... .......... .......... 535 GTACTCTTAG TTGCGCGGAC TCTTCACTTT TGATGTCGCA CCTGTCTCGG ATTCTTCAAA 64508 .......... .......... .......... .......... .......... .......... 535 ATACACTACT TTTGACGAAT TCGACATGCA CCTGTTCGCA TTTTTGAAGA GTCCATGCAA 64568 .......... .......... .......... .......... .......... .......... 535 CATAGGTTGT ACTTGACGTC AGGAGTTGAT ATACCCAAAG TTCTGGTAAA TATAAGGAAT 64628 .......... .......... .......... .......... .......... .......... 535 TCTAGACTAG GAAATGGGAT TAACTGTGGT TATGCATTTT ACTAGGTAGT TGGAATGTCC 64688 .......... .......... .......... .......... .......... .......... 535 TTAACTGTGT TCATGGGACA TCTTAATCAA TCAGCTGTGC CTAATTCCGA AACTGTTGAG 64748 .......... .......... .......... .......... .......... .......... 535 CTCAGTTGTA TTCGCTGGCT CGATTTAGGT CCACTTCTAC GTCCATGTTT GATGTTCAGT 64808 .......... .......... .......... .......... .......... .......... 535 GTCTAGCTGG TCCTTACGTG AACCCGATGA GGTACTTGCT ATAAAGGGAC CTGAAGACTG 64868 .......... .......... .......... .......... .......... .......... 535 ATTCATATTT CAAGTTCATT GGAGATGTGT TTAACAACTG TTCGATTTCT TCAGTTTTGT 64928 .......... .......... .......... .......... .......... .......... 535 ATTTTCACAA GTCCTCGGAC ATGTGCGACC ATGCTGATTA ATATAAACAT TTAAAAATGA 64988 .......... .......... .......... .......... .......... .......... 535 TTTCAATAAG GTTACAATAT GTATGTGATG AGTTGCACAA AATTAGAATG GGAAAATGAT 65048 .......... .......... .......... .......... .......... .......... 535 CGCACATTTT TTATGGGCAT TCTGCTTAGA TTGTAATTCC CACTTAATCA ACTTAAATAA 65108 .......... .......... .......... .......... .......... .......... 535 TAGAATTATA ATGATAGCCT GTTCATTCAG TGGAAGATCT AGGATTTGAA GATGGTGGGT 65168 .......... .......... .......... .......... .......... .......... 535 GCTCATTTTC TTTAAGATAA AGTTGCTAAC CTAGAAGGGT TACTTTCTGG AAGCTTTGTA 65228 .......... .......... .......... .......... .......... .......... 535 ATGTTTTTAT AGTTTAGTTA GTTAATGAAA GACAAATACA TAATTGGAAA CAAGAAAGAA 65288 .......... .......... .......... .......... .......... .......... 535 AAAATGAGCA AAAAAGAATC AGCAGCTAAA GTATACGTAT GAAGTAGTTC TGTTTCCTTT 65348 .......... .......... .......... .......... .......... .......... 535 TTTCCACCAA AAAAAGATTA ATAGTTAGCA CCTACTAGGA TTCGAACCCT CAACAGAACC 65408 .......... .......... .......... .......... .......... .......... 535 CATCAGTGCA CTCTTATTTC AACTCTAGAA CCAAAGCACC CATAAGAACT TTTGGTTTTT 65468 .......... .......... .......... .......... .......... .......... 535 GTCTGCTCGC GAGTAGATTA TATTAGTTTT ACAGATTTTC TTTATATATA CACAAAATTC 65528 .......... .......... .......... .......... .......... .......... 535 TCATCGGGGG CAATGGGGGC TCGAGCACCG ATAAACTACA CGTGTAGTGG GTGTGTCCCT 65588 .......... .......... .......... .......... .......... .......... 535 GTGTTCATTT GCTTTTGAAG ATAGATTAAC GGAATCTCTT TTCTTTCTTT CAAATTTGCA 65648 .......... .......... .......... .......... .......... .......... 535 CTTTATTTAA AGAGTATATT AAGGATAGGA AGAGACATTA TTATCATTTT TAATTATAAA 65708 .......... .......... .......... .......... .......... .......... 535 ATATCTTTTT CCTAGTTTGC CACGTCCCAA AAAAAAATCT TTCCTTGCTT TATGTTACAT 65768 .......... .......... .......... .......... .......... .......... 535 TAATTGAATA CATTTACCAT CCTCTTTAGT CGTTAATATA TAACCCATAG ATACACTTGC 65828 .......... .......... .......... .......... .......... .......... 535 ACACACGTTC CACAATATAT AATTTAACTC TCATTTAATT ATGCAAAATG TTCATATTTA 65888 .......... .......... .......... .......... .......... .......... 535 ATGGAGTAGC CTTAATTGTG AAAATATAAT GTGTTCACAT TTTGTACAAG AACATTATTG 65948 .......... .......... .......... .......... .......... .......... 535 CAATAGTTTT TAAGGGGTGA AATAATCTTT CAACTTTTAA CTTTGGGGCT TCCACTTATG 66008 .......... .......... .......... .......... .......... .......... 535 GAATAGTGTG GTGATTAATC CCATATATGC TTGTATTCTA TGCATAGACC AACTGATAAA 66068 .......... .......... .......... .......... .......... .......... 535 GTTATTAGCA TATGTAGATA TGTAGCACAA CCTAAGTTGC TTTGACTCTT CGCTTTCGGT 66128 .......... .......... .......... .......... .......... .......... 535 GCCAAAACCG TGTCGAGACG ACATGGGCGT GGGTCTGGGC TGGGATAAGT ACCTGATCTG 66188 .......... .......... .......... .......... .......... .......... 535 GTCAACTAGG TTTGGGTACT TTGACCAAAT TCGAGGGAAA TTTTTTGGAT AGATCCAATG 66248 .......... .......... .......... .......... .......... .......... 535 ATTTCTGTCC CTTTTCTTTT ATCTCATTCC AAGATTCTCC TCTTGATCAT TATTCACTCC 66308 .......... .......... .......... .......... .......... .......... 535 TTGAGTTTTC CACATAATAT CTCATTATTT TGGTTTTATA ACTCTTATGT TTAGCCAAAT 66368 .......... .......... .......... .......... .......... .......... 535 CCCCGCACCC TGTATCCACA CATGGATCCG TATCCCCGAA CTTAAAAATT TAGGTCATAG 66428 .......... .......... .......... .......... .......... .......... 535 AGGATCTGAT CTCTAGATCT GCACCCTTAT CGGATACCCG CACCCGAGCG ACTTAGAGTG 66488 .......... .......... .......... .......... .......... .......... 535 CAACTACTAT TAATTGCTGG ACAAACTTTC TCACTCTACA TGTGTGATTT TGAACTGCAT 66548 .......... .......... .......... .......... .......... .......... 535 GTGTAGTTGT TAAATGTCTT TGCAGATAAC GTTCAGTGGC AGAACTAGTA TTTAGTTTAT 66608 .......... .......... .......... .......... .......... .......... 535 GCTTGTATGT TGATAACTGT GCGACTACAA GGGCATTTTA CAACATAACA CATGTTCTAT 66668 .......... .......... .......... .......... .......... .......... 535 TTGTATGAAA TTATTTGCAT TTGTCTTTAT ATGTACATGC AAATACTTAG CCATCACAAT 66728 .......... .......... .......... .......... .......... .......... 535 GTGTATGATG CCATTTCTGG AAACAAGGGA CCAAATCTAT AAAATTGGTC AAATGTTGGA 66788 .......... .......... .......... .......... .......... .......... 535 AAGAGGAGGT TATCCCGGTA TTTTTATCCG TGGAAAGCCC AGAAAAGTGA CCGACTAGAG 66848 .......... .......... .......... .......... .......... .......... 535 CAGGGCCCTA TTGATAAATG TAAGGAAGTG TTTATGAGCC CTAGCAAAAG CCGTAGCCCT 66908 .......... .......... .......... .......... .......... .......... 535 TTAATTGTGT CGGGGAATCG GCCTTCTTTA GTCAAAGGAT CTAATTCCCA TGTATTTCCA 66968 .......... .......... .......... .......... .......... .......... 535 AGGTTATTGA TGGTAGAGTT ATTGCAACTT ATGCCTTTGT TGAGCTCTTA GATGCGAGAT 67028 .......... .......... .......... .......... .......... .......... 535 TGTACATCTT GTCAGTCTTC TTCATTTTGT GCACTTTGCT GGTTTTTGGT TTGTGATGGC 67088 .......... .......... .......... .......... .......... .......... 535 TTTTAATGAT GTTTCACCAT TGAATTCTAA AGTTTTATAT GGGTCAAATA GGCAGGTTGG 67148 .......... .......... .......... .......... .......... .......... 535 ACTAAATTTG GGTGGGTTAA GCAGGTTGGA TCAGTAAGCA AATTGGTCAT AGCCAATTTA 67208 .......... .......... .......... .......... .......... .......... 535 TCATATCTAA TCTCCCTTTC AATTTTAAGG ATTTCATGAA TGATGTCACT CAATTGCTCT 67268 .......... .......... .......... .......... .......... .......... 535 GCTGATCTTC CTTCTGGATG CTCTTGAGAA GTAGTTGAAA ATGTTGCATT AGATTGTAAA 67328 .......... .......... .......... .......... .......... .......... 535 TAGTCCAAAA GTAGTTCCAC TTCTTGCTAG ATTCCTTGGT CCTTGGGGTG AAATAGGACA 67388 .......... .......... .......... .......... .......... .......... 535 CACTTTTGCC TTTTGCTCCT TCTTGATGTA TGTATCTCAC ACCTACATAG TACTGTAAAC 67448 .......... .......... .......... .......... .......... .......... 535 ATCTATGTAG TATCTTTTCT GATGAAAAGA AATGGTACTA CTTCTTGATC TTTCTCTTGT 67508 .......... .......... .......... .......... .......... .......... 535 AAAGTAATAA TTAGGTAATA TTTCATGCTC TTTATTGGTA CTTCTGTTTG ATGTTCTATG 67568 .......... .......... .......... .......... .......... .......... 535 TTATGTTGAT CATACACTTC AATTGTCAAC TCTTTCCTAC ATTCATTGCT GACATCCAGA 67628 .......... .......... .......... .......... .......... .......... 535 GATGTTACAA ATTTGATTTT GATTTCGTAG ATACAAACAT GGTATACCAC TTTGAAATGT 67688 .......... .......... .......... .......... .......... .......... 535 ATTTTGATCA TTAATGATTT CTCTGTTTTA CAGGTGGTAT CCTTGCTTGC AGGTTGTATC 67748 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTGGTAT CCTTGCTTGC AGGTTGTATC 562 ATGGATGACA AAGTTGGAGG AGTTGTTGGG TAGATAATTA GAAAATGCTA CAAAGGTAAA 67808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATGACA AAGTTGGAGG AGTTGTTGGG TAGATAATTA GAAAATGCTA CAAAGGTAAA 622 GGATTAGGTT TCATCTCTTA AAACATAGAT ACAGGGTCTA CACAAACCCC AGATAGTATT 67868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTAGGTT TCATCTCTTA AAACATAGAT ACAGGGTCTA CACAAACCCC AGATAGTATT 682 GCAAGATGTT TGTCTGAATG TTTTGCATCA GATGTCCAAA GTTTTCATTT ATGCTTCATC 67928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGATGTT TGTCTGAATG TTTTGCATCA GATGTCCAAA GTTTTCATTT ATGCTTCATC 742 AATCGCGAAT TTTGCGGATT GTTTTAGTCC TTGTGCAGTT GATCTG 67974 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATCGCGAAT TTTGCGGATT GTTTTAGTCC TTGTGCAGTT GATCTG 788 hqPGS_C04HBa0127E11.1+_SGN-E539885- (63549 64083,67722 67974) ******************************************************************************** EST sequence 41 +strand 345 n (File: SGN-E288154+) 1 ACGGGGGTAG TGGTCTCCAA ATGCCGGCGA ATTATGGGGA CTATTTCATT GGACCGGTGT 61 TTGAGCAATT GATCCAGAAT TTGGCAGATA ATGATCCAAA CCGATATGGG ACTCCTCCGG 121 CGTCGAGAGC AGCGGTGGAG GGGCTCTCTA CCATTTTGTT GATGAGGAAT TGATGCGTTC 181 TGAACTGGCA CAGTGTGCTG TTTGTAAGGA TGATTCTGAG ATGGGGTCAC GATGTGATAC 241 AGATGCCTTG TAAGCATGTT TATCATAAGG ATTGTCTCAT ACCGTGGCTT GAGTTGCACA 301 GTTCTTGCCC GGTTTGTCGC TATGAGTTGC CAACGGATGA GCCTG Predicted gene structure (within gDNA segment 62954 to 64508): Exon 1 63554 63898 ( 345 n); cDNA 1 345 ( 345 n); score: 0.967 MATCH C04HBa0127E11.1+ SGN-E288154+ 0.967 345 1.000 C PGS_C04HBa0127E11.1+_SGN-E288154+ (63554 63898) Alignment (genomic DNA sequence = upper lines): ACGGGGGTAG TGGTCTCCAA ATGCCGGCGA ATTATGGGGA CTATTTCATT GGACCGGGGT 63613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ACGGGGGTAG TGGTCTCCAA ATGCCGGCGA ATTATGGGGA CTATTTCATT GGACCGGTGT 60 TTGAGCAATT GATCCAGAAT TTGGCAGAAA ATGATCCAAA CCGATATGGG ACTCCTCCGG 63673 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTGAGCAATT GATCCAGAAT TTGGCAGATA ATGATCCAAA CCGATATGGG ACTCCTCCGG 120 CGTCGAGAGC AGCGGTGGAG GGGCTCCCTA CCATCAAAGT TGATGAGGAA TTGATGCGTT 63733 |||||||||| |||||||||| |||||| ||| |||| || |||||||||| |||||||||| CGTCGAGAGC AGCGGTGGAG GGGCTCTCTA CCAT-TTTGT TGATGAGGAA TTGATGCGTT 179 CTGAACTGGC ACAGTGTGCT GTTTGTAAGG ATGATTTTGA GATGGGGTCA -GATGTGATA 63792 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||| CTGAACTGGC ACAGTGTGCT GTTTGTAAGG ATGATTCTGA GATGGGGTCA CGATGTGATA 239 CAGATGCCTT GTAAGCATGT TTATCATAAG GATTGTATCA TACCGTGGCT TGAGTTGCAC 63852 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CAGATGCCTT GTAAGCATGT TTATCATAAG GATTGTCTCA TACCGTGGCT TGAGTTGCAC 299 AGTTCTTGCC CGGTTTGTCG CTATGAGTTG CCAACGGATG AGCCTG 63898 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGTTCTTGCC CGGTTTGTCG CTATGAGTTG CCAACGGATG AGCCTG 345 hqPGS_C04HBa0127E11.1+_SGN-E288154+ (63554 63898) ******************************************************************************** EST sequence 47 +strand 780 n (File: SGN-E545942+) 1 ACTACTATTT TTACATACTA TTTGTTTTTG TTTTCTACTT TGTTAGGCTC ATTCTCTTGC 61 TTTACTTTAC AAGAGTGGTG AATCTTTGAT TTTGTTAAGT GTTTTGACAT ATTTGTTGTA 121 TTGGGGCTCT GTTTTTTTTC TCCTATGAAT AGAGCTTTTT CTATTACTTG AAACTTCAAC 181 TGAAGCTGCT TTCTTTGTTT GGGGTTTTGT TTAATTGAGC TCTGTTTTCC AGAGCTTGGT 241 GAATTTGTTG TTTTTTTCTT TGTTGGGGTT TGCTCAATTC AGCTCATAAA TCCCATATTA 301 CTACTCTATT TGGACTTGAT TTTCTATTAT TTGTTGTTTT TTTCTTTGTT GGGGTTTGCT 361 CAATTCAGCT CACAAATCCC ATATTAGTAC TCTATTTTGG ATTTGATTTT CAATTATTGT 421 TGGGTTTTGT TTGTTGATAA ATCCCAGTAA TTTTCCACCA CTACCGTTTT TGCTGCTAGT 481 GTTTTGAGCT TCTAATGTCG ACGTCTGCAG AGGGAAATGG AGCTATAATT GATCCTCAGA 541 GGCAACAACA ACAGGCGCCT ACTGGGGTTG GTACAAATGG TGCTTTAACA GTGAAAAAAC 601 CGCCGGTAAA AGACCGGCAT AGTAAGGTTG ATGGTAGAGG AAGACGTATA AGGATGCCAA 661 TTGTATGTGC TGCAAGAGTT TTTCAGCTTA CTCGTGAATT GGGTCATAAA TCCGATGGAC 721 AAACTATTGA ATGGCTGCTT CGGTCAGCTG AGCCTTTCAT TATAGCTGCT ACTGGTACTG Predicted gene structure (within gDNA segment 76736 to 80111): Exon 1 78189 78205 ( 17 n); cDNA 82 99 ( 18 n); score: 0.735 Intron 1 78206 78786 ( 581 n); Pd: 0.539 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 78787 78886 ( 100 n); cDNA 100 192 ( 93 n); score: 0.860 Intron 2 78887 78916 ( 30 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.84) ?? Exon 3 78917 79501 ( 585 n); cDNA 193 780 ( 588 n); score: 0.954 MATCH C04HBa0127E11.1+ SGN-E545942+ 0.940 702 0.900 C PGS_C04HBa0127E11.1+_SGN-E545942+ (78189 78205,78787 78886,78917 79501) Alignment (genomic DNA sequence = upper lines): ATCTTAG-TT TAGTTAAGGC GTGTCTCATG AATTTCGGTC ATACTCATGC CAATAAAAAT 78247 ||||| | || | |||||| ATCTTTGATT TTGTTAAG.. .......... .......... .......... .......... 99 GAATTGAAAT ATGTATTATC AGTTAAGATC AAGTTAAAAA ACATACATTT TCAAAGTTGG 78307 .......... .......... .......... .......... .......... .......... 99 AGTTTTTTCG TACATCCAAA GAAAGTGACC GATAAAAATT ATGATATAGT GATGAGTTAC 78367 .......... .......... .......... .......... .......... .......... 99 TCATTCGTTC TTAATTAAGA GAGCGCAAAT TCAAATTTAA TCGAACGTCG ACCGACCGAC 78427 .......... .......... .......... .......... .......... .......... 99 GAAAAGAAAC CACGGAAAGA GAAGTGTGAA AAATGGAAAG AGATGGTGAA AATTTTTGTG 78487 .......... .......... .......... .......... .......... .......... 99 TGAATGTGAA GATTGAAGAG AGAGAGAGAG AGGGGAGTGA GCGCGTGAAA GAGGGTAGTG 78547 .......... .......... .......... .......... .......... .......... 99 GGTACTGTAC TGGATTGCTA GCAGGGATGA GCTGTGAATA TATGTGTAAG AGAGTAGTAC 78607 .......... .......... .......... .......... .......... .......... 99 TAATGTCCCC ACCACCCATG TGACCTTCTT CCTGTCACCA CCAGTTCCTG CTTCTCAATC 78667 .......... .......... .......... .......... .......... .......... 99 ATTAGTCCTA TTCCCCCCTC CCCCTCCATT GTTGTATCTC TACTATTTTT ACATACTATT 78727 .......... .......... .......... .......... .......... .......... 99 TGTTTTTTGG TTCTACTCTC ATTCTCTTGC TATACTTTAC AAGAGTGGTG GATCTTGTAT 78787 | .......... .......... .......... .......... .......... .........T 100 TTTTTTACAT ATTTGTTGTT TTGGGGCTCT GTTTTTTTTT TTTTTGCTTC CATGAATCGA 78847 |||| |||| ||||||||| |||||||||| | ||| ||||| || | |||||| || GTTTTGACAT ATTTGTTGTA TTGGGGCTCT G------TTT TTTTT-CTCC TATGAATAGA 153 GCTTTTTCTA TTACTTGAAA CTTCAACTGA ACCTGCTTTA TTGATTTGTA AAAGTTTTTT 78907 |||||||||| |||||||||| |||||||||| | ||||||| GCTTTTTCTA TTACTTGAAA CTTCAACTGA AGCTGCTTT. .......... .......... 192 TTCTTCTTT- T--GTTTGGG GTTTTGTTTA ATTGAGCTCT GTTTTCCAGA GCTTGGTGAA 78964 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C TTTGTTTGGG GTTTTGTTTA ATTGAGCTCT GTTTTCCAGA GCTTGGTGAA 243 TTTGTTGTTT TTCTTCTTTG TTGGGGTTTG CTCAATTCAG CTCATAAATC CCATATTGGT 79024 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||| | TTTGTTGTTT TT-TTCTTTG TTGGGGTTTG CTCAATTCAG CTCATAAATC CCATATTACT 302 GCTCTATTTG GACCTGATTT TCAATTATTT GTTG-TTTTT TATTTGTTGG GGTTTGCTCA 79083 ||||||||| ||| |||||| || ||||||| |||| ||||| | |||||||| |||||||||| ACTCTATTTG GACTTGATTT TCTATTATTT GTTGTTTTTT TCTTTGTTGG GGTTTGCTCA 362 ATTCAGCTCA CAATTCCCGT ATTAGTACTC TATTTTGGAT TTGATTTTCG ATTATTGTTG 79143 |||||||||| ||| |||| | |||||||||| |||||||||| ||||||||| |||||||||| ATTCAGCTCA CAAATCCCAT ATTAGTACTC TATTTTGGAT TTGATTTTCA ATTATTGTTG 422 GGTTTTGTTT GTTGATAAAT CCTAGTAATT TTCCACCACT ACCGTTTTTG CTGCTAGTGT 79203 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GGTTTTGTTT GTTGATAAAT CCCAGTAATT TTCCACCACT ACCGTTTTTG CTGCTAGTGT 482 TTTGAGCTTC TAATGTCGAC GTCTGCAGAG GGAAATGGAG CTATAATTGA TCCTCAGAGG 79263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGCTTC TAATGTCGAC GTCTGCAGAG GGAAATGGAG CTATAATTGA TCCTCAGAGG 542 CAACAACAAC AGGCGCCTAC TGGGGTTGGT ACAAATGGTG CTTTAACAGT GAAAAAACCG 79323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAACAAC AGGCGCCTAC TGGGGTTGGT ACAAATGGTG CTTTAACAGT GAAAAAACCG 602 CCGGTAAAAG ACCGGCATAG TAAGGTTGAT GGTAGAGGAA GACGTATAAG GATGCCAATT 79383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTAAAAG ACCGGCATAG TAAGGTTGAT GGTAGAGGAA GACGTATAAG GATGCCAATT 662 GTATGTGCGG CAAGAGTTTT TCAGCTTACT CGTGAATTGG GTCATAAATC CGATGGACAA 79443 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTGCTG CAAGAGTTTT TCAGCTTACT CGTGAATTGG GTCATAAATC CGATGGACAA 722 ACTATTGAAT GGCTGCTTCG TCAAGCTGAG CCTTCAATTA TAGCTGCTAC TGGTACTG 79501 |||||||||| |||||||||| ||||||| |||| |||| |||||||||| |||||||| ACTATTGAAT GGCTGCTTCG GTCAGCTGAG CCTTTCATTA TAGCTGCTAC TGGTACTG 780 hqPGS_C04HBa0127E11.1+_SGN-E545942+ (78787 78886,78917 79501) ******************************************************************************** EST sequence 48 +strand 494 n (File: SGN-E545949+) 1 ACTACTATTT TTACATACTA TTTGTTTTTG TTTTCTACTT TGTTAGGCTC ATTCTCTTGC 61 TTTACTTTAC AAGAGTGGTG AATCTTTGAT TTTGTTAAGT GTTTTGACAT ATTTGTTGTA 121 TTGGGGCTCT GTTTTTTTTC TCCTATGAAT AGAGCTTTTT CTATTACTTG AAACTTCAAC 181 TGAAGCTGCT TTCTTTGTTT GGGGTTTTGT TTAATTGAGC TCTGTTTTCC AGAGCTTGGT 241 GAATTTGTTG TTTTTTTCTT TGTTGGGGTT TGCTCAATTC AGCTCATAAA TCCCATATTA 301 CTACTCTATT TGGACTTGAT TTTCTATTAT TTGTTGTTTT TTTCTTTGTT GGGGTTTGCT 361 CAATTCAGCT CACAAATCCC ATATTAGTAC TCTATTTTGG ATTTGATTTT CAATTATTGT 421 TGGGTTTTGT TTGTTGATAA ATCCCAGTAA TTTTCCACCA CTACCGTTTT TGCTGCTAGT 481 GTTTTGAGCT TCTA Predicted gene structure (within gDNA segment 76736 to 79825): Exon 1 78189 78205 ( 17 n); cDNA 82 99 ( 18 n); score: 0.735 Intron 1 78206 78786 ( 581 n); Pd: 0.539 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 78787 78886 ( 100 n); cDNA 100 192 ( 93 n); score: 0.860 Intron 2 78887 78916 ( 30 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.84) ?? Exon 3 78917 79215 ( 299 n); cDNA 193 494 ( 302 n); score: 0.930 MATCH C04HBa0127E11.1+ SGN-E545949+ 0.912 416 0.842 C PGS_C04HBa0127E11.1+_SGN-E545949+ (78189 78205,78787 78886,78917 79215) Alignment (genomic DNA sequence = upper lines): ATCTTAG-TT TAGTTAAGGC GTGTCTCATG AATTTCGGTC ATACTCATGC CAATAAAAAT 78247 ||||| | || | |||||| ATCTTTGATT TTGTTAAG.. .......... .......... .......... .......... 99 GAATTGAAAT ATGTATTATC AGTTAAGATC AAGTTAAAAA ACATACATTT TCAAAGTTGG 78307 .......... .......... .......... .......... .......... .......... 99 AGTTTTTTCG TACATCCAAA GAAAGTGACC GATAAAAATT ATGATATAGT GATGAGTTAC 78367 .......... .......... .......... .......... .......... .......... 99 TCATTCGTTC TTAATTAAGA GAGCGCAAAT TCAAATTTAA TCGAACGTCG ACCGACCGAC 78427 .......... .......... .......... .......... .......... .......... 99 GAAAAGAAAC CACGGAAAGA GAAGTGTGAA AAATGGAAAG AGATGGTGAA AATTTTTGTG 78487 .......... .......... .......... .......... .......... .......... 99 TGAATGTGAA GATTGAAGAG AGAGAGAGAG AGGGGAGTGA GCGCGTGAAA GAGGGTAGTG 78547 .......... .......... .......... .......... .......... .......... 99 GGTACTGTAC TGGATTGCTA GCAGGGATGA GCTGTGAATA TATGTGTAAG AGAGTAGTAC 78607 .......... .......... .......... .......... .......... .......... 99 TAATGTCCCC ACCACCCATG TGACCTTCTT CCTGTCACCA CCAGTTCCTG CTTCTCAATC 78667 .......... .......... .......... .......... .......... .......... 99 ATTAGTCCTA TTCCCCCCTC CCCCTCCATT GTTGTATCTC TACTATTTTT ACATACTATT 78727 .......... .......... .......... .......... .......... .......... 99 TGTTTTTTGG TTCTACTCTC ATTCTCTTGC TATACTTTAC AAGAGTGGTG GATCTTGTAT 78787 | .......... .......... .......... .......... .......... .........T 100 TTTTTTACAT ATTTGTTGTT TTGGGGCTCT GTTTTTTTTT TTTTTGCTTC CATGAATCGA 78847 |||| |||| ||||||||| |||||||||| | ||| ||||| || | |||||| || GTTTTGACAT ATTTGTTGTA TTGGGGCTCT G------TTT TTTTT-CTCC TATGAATAGA 153 GCTTTTTCTA TTACTTGAAA CTTCAACTGA ACCTGCTTTA TTGATTTGTA AAAGTTTTTT 78907 |||||||||| |||||||||| |||||||||| | ||||||| GCTTTTTCTA TTACTTGAAA CTTCAACTGA AGCTGCTTT. .......... .......... 192 TTCTTCTTT- T--GTTTGGG GTTTTGTTTA ATTGAGCTCT GTTTTCCAGA GCTTGGTGAA 78964 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C TTTGTTTGGG GTTTTGTTTA ATTGAGCTCT GTTTTCCAGA GCTTGGTGAA 243 TTTGTTGTTT TTCTTCTTTG TTGGGGTTTG CTCAATTCAG CTCATAAATC CCATATTGGT 79024 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||| | TTTGTTGTTT TT-TTCTTTG TTGGGGTTTG CTCAATTCAG CTCATAAATC CCATATTACT 302 GCTCTATTTG GACCTGATTT TCAATTATTT GTTG-TTTTT TATTTGTTGG GGTTTGCTCA 79083 ||||||||| ||| |||||| || ||||||| |||| ||||| | |||||||| |||||||||| ACTCTATTTG GACTTGATTT TCTATTATTT GTTGTTTTTT TCTTTGTTGG GGTTTGCTCA 362 ATTCAGCTCA CAATTCCCGT ATTAGTACTC TATTTTGGAT TTGATTTTCG ATTATTGTTG 79143 |||||||||| ||| |||| | |||||||||| |||||||||| ||||||||| |||||||||| ATTCAGCTCA CAAATCCCAT ATTAGTACTC TATTTTGGAT TTGATTTTCA ATTATTGTTG 422 GGTTTTGTTT GTTGATAAAT CCTAGTAATT TTCCACCACT ACCGTTTTTG CTGCTAGTGT 79203 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GGTTTTGTTT GTTGATAAAT CCCAGTAATT TTCCACCACT ACCGTTTTTG CTGCTAGTGT 482 TTTGAGCTTC TA 79215 |||||||||| || TTTGAGCTTC TA 494 hqPGS_C04HBa0127E11.1+_SGN-E545949+ (78787 78886,78917 79215) ******************************************************************************** EST sequence 4 +strand 481 n (File: SGN-E314139+) 1 GATCTTGTAT TTTTTTACAT ATTTGTTGTT TTGGGGCTCT GTTTTTTTTT TTTTTGCTTC 61 CATGAATCGA GCTTTTTCTA TTACTTGAAA CTTCAACTGA ACCTGCTTTA TTGATTTGTA 121 AAAGTTTTTT TTCTTCTTTT GTTTGGGGTT TTGTTTAATT GAGCTCTGTT TTCCAGAGCT 181 TGGTGAATTT GTTGTTTTTC TTCTTTGTTG GGGTTTGCTC AATTCAGCTC ATAAATCCCA 241 TATTGGTGCT CTATTTGGAC CTGATTTTCA ATTATTTGTT GTTTTTTATT TGTTGGGGTT 301 TGCTCAATTC AGCTCACAAT TCCCGTATTA GTACTCTATT TTGGATTTGA TTTTCGATTA 361 TTGTTGGGTT TTGTTTGTTG ATAAATCCTA GTAATTTTCC ACCACTACCG TTTTTGCTGC 421 TAGTGTTTTG AGCTTCTAAT GTCGACGTCT GCAGAGGGAA ATGGAGCTAT AATTGATCCT 481 C Predicted gene structure (within gDNA segment 78178 to 79868): Exon 1 78778 79258 ( 481 n); cDNA 1 481 ( 481 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-E314139+ 1.000 481 1.000 C PGS_C04HBa0127E11.1+_SGN-E314139+ (78778 79258) Alignment (genomic DNA sequence = upper lines): GATCTTGTAT TTTTTTACAT ATTTGTTGTT TTGGGGCTCT GTTTTTTTTT TTTTTGCTTC 78837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTGTAT TTTTTTACAT ATTTGTTGTT TTGGGGCTCT GTTTTTTTTT TTTTTGCTTC 60 CATGAATCGA GCTTTTTCTA TTACTTGAAA CTTCAACTGA ACCTGCTTTA TTGATTTGTA 78897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAATCGA GCTTTTTCTA TTACTTGAAA CTTCAACTGA ACCTGCTTTA TTGATTTGTA 120 AAAGTTTTTT TTCTTCTTTT GTTTGGGGTT TTGTTTAATT GAGCTCTGTT TTCCAGAGCT 78957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTTTT TTCTTCTTTT GTTTGGGGTT TTGTTTAATT GAGCTCTGTT TTCCAGAGCT 180 TGGTGAATTT GTTGTTTTTC TTCTTTGTTG GGGTTTGCTC AATTCAGCTC ATAAATCCCA 79017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAATTT GTTGTTTTTC TTCTTTGTTG GGGTTTGCTC AATTCAGCTC ATAAATCCCA 240 TATTGGTGCT CTATTTGGAC CTGATTTTCA ATTATTTGTT GTTTTTTATT TGTTGGGGTT 79077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGTGCT CTATTTGGAC CTGATTTTCA ATTATTTGTT GTTTTTTATT TGTTGGGGTT 300 TGCTCAATTC AGCTCACAAT TCCCGTATTA GTACTCTATT TTGGATTTGA TTTTCGATTA 79137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCAATTC AGCTCACAAT TCCCGTATTA GTACTCTATT TTGGATTTGA TTTTCGATTA 360 TTGTTGGGTT TTGTTTGTTG ATAAATCCTA GTAATTTTCC ACCACTACCG TTTTTGCTGC 79197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGGGTT TTGTTTGTTG ATAAATCCTA GTAATTTTCC ACCACTACCG TTTTTGCTGC 420 TAGTGTTTTG AGCTTCTAAT GTCGACGTCT GCAGAGGGAA ATGGAGCTAT AATTGATCCT 79257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGTTTTG AGCTTCTAAT GTCGACGTCT GCAGAGGGAA ATGGAGCTAT AATTGATCCT 480 C 79258 | C 481 hqPGS_C04HBa0127E11.1+_SGN-E314139+ (78778 79258) ******************************************************************************** EST sequence 9 +strand 740 n (File: SGN-E339484+) 1 TTTTTTTTTT TTTTTGCTTC CATGAATCGA GCTTTTTCTA TTACTTGAAA CTTCAACTGA 61 ACCTGCTTTA TTGATTTGTA AAAGTTTTTT TTCTTCTTTT GTTTGGGGTT TTGTTTAATT 121 GAGCTCTGTT TTCCAGAGCT TGGTGAATTT GTTGTTTTTC TTCTTTGTTG GGGTTTGCTC 181 AATTCAGCTC ATAAATCCCA TATTGGTGCT CTATTTGGAC CTGATTTTCA ATTATTTGTT 241 GTTTTTTATT TGTTGGGGTT TGCTCAATTC AGCTCACAAT TCCCGTATTA GTACTCTATT 301 TTGGATTTGA TTTTCGATTA TTGTTGGGTT TTGTTTGTTG ATAAATCCTA GTAATTTTCC 361 ACCACTACCG TTTTTGCTGC TAGTGTTTTG AGCTTCTAAT GTCGACGTCT GCAGAGGGAA 421 ATGGAGCTAT AATTGATCCT CAGAGGCAAC AACAACAGGC GCCTACTGGG GTTGGTACAA 481 ATGGTGCTTT AACAGTGAAA AAACCGCCGG TAAAAGACCG GCATAGTAAG GTTGATGGTA 541 GAGGAAGACG TATAAGGATG CCAATTGTAT GTGCGGCAAG AGTTTTTCAG CTTACTCGTG 601 AATTGGGTCA TAAATCCGAT GGACAAACTA TTGAATGGCT GCTTCGTCAA GCTGAGCCTT 661 CAATTATAGC TGCTACTGGT ACTGGTACTA TTCCTGCTAG TTTCTCGACT GTATCTGTAT 721 CGGTACGGAA CTCAACTGCA Predicted gene structure (within gDNA segment 78209 to 80167): Exon 1 78819 79557 ( 739 n); cDNA 2 740 ( 739 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-E339484+ 1.000 739 0.999 C PGS_C04HBa0127E11.1+_SGN-E339484+ (78819 79557) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTT TTTTGCTTCC ATGAATCGAG CTTTTTCTAT TACTTGAAAC TTCAACTGAA 78878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT TTTTGCTTCC ATGAATCGAG CTTTTTCTAT TACTTGAAAC TTCAACTGAA 61 CCTGCTTTAT TGATTTGTAA AAGTTTTTTT TCTTCTTTTG TTTGGGGTTT TGTTTAATTG 78938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCTTTAT TGATTTGTAA AAGTTTTTTT TCTTCTTTTG TTTGGGGTTT TGTTTAATTG 121 AGCTCTGTTT TCCAGAGCTT GGTGAATTTG TTGTTTTTCT TCTTTGTTGG GGTTTGCTCA 78998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCTGTTT TCCAGAGCTT GGTGAATTTG TTGTTTTTCT TCTTTGTTGG GGTTTGCTCA 181 ATTCAGCTCA TAAATCCCAT ATTGGTGCTC TATTTGGACC TGATTTTCAA TTATTTGTTG 79058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAGCTCA TAAATCCCAT ATTGGTGCTC TATTTGGACC TGATTTTCAA TTATTTGTTG 241 TTTTTTATTT GTTGGGGTTT GCTCAATTCA GCTCACAATT CCCGTATTAG TACTCTATTT 79118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTATTT GTTGGGGTTT GCTCAATTCA GCTCACAATT CCCGTATTAG TACTCTATTT 301 TGGATTTGAT TTTCGATTAT TGTTGGGTTT TGTTTGTTGA TAAATCCTAG TAATTTTCCA 79178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTTGAT TTTCGATTAT TGTTGGGTTT TGTTTGTTGA TAAATCCTAG TAATTTTCCA 361 CCACTACCGT TTTTGCTGCT AGTGTTTTGA GCTTCTAATG TCGACGTCTG CAGAGGGAAA 79238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTACCGT TTTTGCTGCT AGTGTTTTGA GCTTCTAATG TCGACGTCTG CAGAGGGAAA 421 TGGAGCTATA ATTGATCCTC AGAGGCAACA ACAACAGGCG CCTACTGGGG TTGGTACAAA 79298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCTATA ATTGATCCTC AGAGGCAACA ACAACAGGCG CCTACTGGGG TTGGTACAAA 481 TGGTGCTTTA ACAGTGAAAA AACCGCCGGT AAAAGACCGG CATAGTAAGG TTGATGGTAG 79358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGCTTTA ACAGTGAAAA AACCGCCGGT AAAAGACCGG CATAGTAAGG TTGATGGTAG 541 AGGAAGACGT ATAAGGATGC CAATTGTATG TGCGGCAAGA GTTTTTCAGC TTACTCGTGA 79418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGACGT ATAAGGATGC CAATTGTATG TGCGGCAAGA GTTTTTCAGC TTACTCGTGA 601 ATTGGGTCAT AAATCCGATG GACAAACTAT TGAATGGCTG CTTCGTCAAG CTGAGCCTTC 79478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGTCAT AAATCCGATG GACAAACTAT TGAATGGCTG CTTCGTCAAG CTGAGCCTTC 661 AATTATAGCT GCTACTGGTA CTGGTACTAT TCCTGCTAGT TTCTCGACTG TATCTGTATC 79538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATAGCT GCTACTGGTA CTGGTACTAT TCCTGCTAGT TTCTCGACTG TATCTGTATC 721 GGTACGGAAC TCAACTGCA 79557 |||||||||| ||||||||| GGTACGGAAC TCAACTGCA 740 hqPGS_C04HBa0127E11.1+_SGN-E339484+ (78819 79557) ******************************************************************************** EST sequence 15 +strand 291 n (File: SGN-E541078+) 1 GGGCCCCCCT CGAGACTAGT TCTCTCTCAG CTCAAATTCC CGTATTAGTA CTCTATTTTG 61 GATTTGATTT TCGATTATTG TTGGGTTTTG TTTGTTGATA AATCCTAGTA ATTTTCCACC 121 ACTACCGTTT TTGCTGCTAG TGTTTTGAGC TTCTAATGTC GACGTCTGCA GAGGGAAATG 181 GAGCTATAAT TGATCCTCAG AGGCAACAAC AACAGGCGCC TACTGGGGTT GGTACAAATG 241 GTGCTTTAAC AGTGAAAAAA CCGCCGGTAA AAGACCGGCA TAGTAAGGTT G Predicted gene structure (within gDNA segment 78155 to 79961): Exon 1 79095 79351 ( 257 n); cDNA 35 291 ( 257 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-E541078+ 1.000 257 0.883 C PGS_C04HBa0127E11.1+_SGN-E541078+ (79095 79351) Alignment (genomic DNA sequence = upper lines): AATTCCCGTA TTAGTACTCT ATTTTGGATT TGATTTTCGA TTATTGTTGG GTTTTGTTTG 79154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCCCGTA TTAGTACTCT ATTTTGGATT TGATTTTCGA TTATTGTTGG GTTTTGTTTG 94 TTGATAAATC CTAGTAATTT TCCACCACTA CCGTTTTTGC TGCTAGTGTT TTGAGCTTCT 79214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATAAATC CTAGTAATTT TCCACCACTA CCGTTTTTGC TGCTAGTGTT TTGAGCTTCT 154 AATGTCGACG TCTGCAGAGG GAAATGGAGC TATAATTGAT CCTCAGAGGC AACAACAACA 79274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTCGACG TCTGCAGAGG GAAATGGAGC TATAATTGAT CCTCAGAGGC AACAACAACA 214 GGCGCCTACT GGGGTTGGTA CAAATGGTGC TTTAACAGTG AAAAAACCGC CGGTAAAAGA 79334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGCCTACT GGGGTTGGTA CAAATGGTGC TTTAACAGTG AAAAAACCGC CGGTAAAAGA 274 CCGGCATAGT AAGGTTG 79351 |||||||||| ||||||| CCGGCATAGT AAGGTTG 291 hqPGS_C04HBa0127E11.1+_SGN-E541078+ (79095 79351) ******************************************************************************** EST sequence 84 -strand 817 n (File: SGN-E541080-) 1 TACTGCTGTG GTCCCACAGC TGGTTTTGGG CTGTTCCAGC TAGGCNTGAT TTGGTCAAAT 61 TTGGAGCTTN GCGGCGGCAC CGCCACCTGA AATGATGGTG CCAACCTCCG CGGCTGCAGC 121 AGCTGCAGCC GCGGCAGCGT TAAGTTCGCA GAGTTCTAGA TTCTTTCAGC AGCAGATGGG 181 TGAGGCTTCA GCTGCTAGAG TTGGGAATTA CTTACCAATG ACTCAAGGGC ATCTCAATTT 241 GCTAGCTTCT CTATCAGGTC CTCCACAGCC CTCTTCCGGG AGAAGAGACG ACGACGGACG 301 TTGAAGATAT GATTATTGTT ATTGTTATTG TTATCGTTAT TGTTGTTAAT ATATCGTATA 361 AATGTGTTTT AATGTTCTTG TTTGTGTTAG ATGAGAAATT TGTTGCTAGG TTCTAGTGAG 421 TGAGAAATGA ACTAGGGGCT TGTTCAATTT CATGAATTAT TGCTAGGATT AGGTTTGTTT 481 GCTATATCTC ATTTGTCAAG AGTTTACGTT CACCGAGTTT TGGTGTTGTA AGCTGTGGGA 541 CGATAACACG AAACACAAGC ATCAGGGGAA GTTGTTGCTT GTGATGATGA ATTTGGTGGG 601 GTTTGTTCTG TTGTTTGCAG ACCTCACAAT AAGCTGCTTT GATCACATTG TAACAAGATA 661 TAATAGGGGA TCAGTGTGGA CTATGAAAAC CTGTAGTTCC ACATGAATGT TTTGTAAGGA 721 AACCATGGCG GTTTCCGTTG AATTCAATTC TGTAATTTGT TGAAACTATA TCAGTTGTGA 781 GCTTAAACTT TCCTACTCAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 78662 to 81264): Exon 1 79710 80514 ( 805 n); cDNA 1 802 ( 802 n); score: 0.994 PPA cDNA 803 817 MATCH C04HBa0127E11.1+ SGN-E541080- 0.994 805 0.985 C PGS_C04HBa0127E11.1+_SGN-E541080- (79710 80514) Alignment (genomic DNA sequence = upper lines): TACTGCTGTG GGTCCCACAG CTGGGTTTTG GGCTGTTCCA GCTAGGCCTG ATTTTGGTCA 79769 ||||||||| |||||||||| || ||||||| |||||||||| ||||||| || | |||||||| TACTGCTGT- GGTCCCACAG CT-GGTTTTG GGCTGTTCCA GCTAGGCNTG A-TTTGGTCA 57 AATTTGGAGC TTTGCGGCGG CACCGCCACC TGAAATGATG GTGCCAACCT CCGCGGCTGC 79829 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGGAGC TTNGCGGCGG CACCGCCACC TGAAATGATG GTGCCAACCT CCGCGGCTGC 117 AGCAGCTGCA GCCGCGGCAG CGTTAAGTTC GCAGAGTTCT AGATTCTTTC AGCAGCAGAT 79889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCTGCA GCCGCGGCAG CGTTAAGTTC GCAGAGTTCT AGATTCTTTC AGCAGCAGAT 177 GGGTGAGGCT TCAGCTGCTA GAGTTGGGAA TTACTTACCA ATGACTCAAG GGCATCTCAA 79949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGAGGCT TCAGCTGCTA GAGTTGGGAA TTACTTACCA ATGACTCAAG GGCATCTCAA 237 TTTGCTAGCT TCTCTATCAG GTCCTCCACA GCCCTCTTCC GGGAGAAGAG ACGACGACGG 80009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTAGCT TCTCTATCAG GTCCTCCACA GCCCTCTTCC GGGAGAAGAG ACGACGACGG 297 ACGTTGAAGA TATGATTATT GTTATTGTTA TTGTTATCGT TATTGTTGTT AATATATCGT 80069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTGAAGA TATGATTATT GTTATTGTTA TTGTTATCGT TATTGTTGTT AATATATCGT 357 ATAAATGTGT TTTAATGTTC TTGTTTGTGT TAGATGAGAA ATTTGTTGCT AGGTTCTAGT 80129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAATGTGT TTTAATGTTC TTGTTTGTGT TAGATGAGAA ATTTGTTGCT AGGTTCTAGT 417 GAGTGAGAAA TGAACTAGGG GCTTGTTCAA TTTCATGAAT TATTGCTAGG ATTAGGTTTG 80189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGAGAAA TGAACTAGGG GCTTGTTCAA TTTCATGAAT TATTGCTAGG ATTAGGTTTG 477 TTTGCTATAT CTCATTTGTC AAGAGTTTAC GTTCACCGAG TTTTGGTGTT GTAAGCTGTG 80249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTATAT CTCATTTGTC AAGAGTTTAC GTTCACCGAG TTTTGGTGTT GTAAGCTGTG 537 GGACGATAAC ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA TGAATTTGGT 80309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACGATAAC ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA TGAATTTGGT 597 GGGGTTTGTT CTGTTGTTTG CAGACCTCAC AATAAGCTGC TTTGATCACA TTGTAACAAG 80369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTTGTT CTGTTGTTTG CAGACCTCAC AATAAGCTGC TTTGATCACA TTGTAACAAG 657 ATATAATAGG GGATCAGTGT GGACTATGAA AACCTGTAGT TCCACATGAA TGTTTTGTAA 80429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAATAGG GGATCAGTGT GGACTATGAA AACCTGTAGT TCCACATGAA TGTTTTGTAA 717 GGAAACCATG GCGGTTTCCG TTGAATTCAA TTCTGTAATT TGTTGAAACT ATATCAGTTG 80489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAACCATG GCGGTTTCCG TTGAATTCAA TTCTGTAATT TGTTGAAACT ATATCAGTTG 777 TGAGCTTAAA CTTTCCTACT CAAAA 80514 |||||||||| |||||||||| ||||| TGAGCTTAAA CTTTCCTACT CAAAA 802 hqPGS_C04HBa0127E11.1+_SGN-E541080- (79710 80514) ******************************************************************************** EST sequence 142 -strand 774 n (File: SGN-E545941-) 1 GAAATGATGG TGCCGACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG 61 CAGAGTTCTA GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT 121 TACTTACCAA TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCGGG TCCTCCACAG 181 CCTTCTTCCG GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT 241 TGTTATTGTT ATCGTTATTG TTGTTAATAT ATCGTATAAA TGTGTTTTAA TGTTCTTGTT 301 TGTGTTAGAT GAGAAATTTG TTGCTAGGTT CTAGTGAGTG AAAAATGAAC TAGGGGCTTG 361 TTCAATTTCA TGAATTATTG CTAGGATTAG GTTTGTTTGC TATATCTCAT TTGTCAAGAG 421 TTTACACGTT CACCGAGTTT TGGTGTTGTA AGCTGTGGGA CGATAACACG AAACACAAGC 481 ATCAGGGGAA GTTGTTGCTT GTGATGATGA ATTTGGTGGG GTTTGTTCTG TTGTTTGCAG 541 ACCTCATAAT AAGCTGCTTT GATCACATTG TAACAAGAGA TAATAGGGGA TCAGTGTGGA 601 CTATGAAAAC TTGTAGTTCC ACATGAATGT TTTGTAAGGA AACCATGGCG GTTTCCGTTG 661 AATTCATTTC TGTAATTTGT TGAAACTATA TCAGTTGTGA GCTTAAACTT TCCTACTCAA 721 AAGATTGCTA TGGACTTCAA TTTATTACTG AAAAAAAAAA AAAAAAAAAA AGAA Predicted gene structure (within gDNA segment 79056 to 81391): Exon 1 79801 80541 ( 741 n); cDNA 1 749 ( 749 n); score: 0.962 PPA cDNA 751 774 MATCH C04HBa0127E11.1+ SGN-E545941- 0.962 741 0.957 C PGS_C04HBa0127E11.1+_SGN-E545941- (79801 80541) Alignment (genomic DNA sequence = upper lines): GAAATGATGG TGCCAACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG 79860 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGATGG TGCCGACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG 60 CAGAGTTCTA GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT 79920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGTTCTA GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT 120 TACTTACCAA TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCAGG TCCTCCACAG 79980 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TACTTACCAA TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCGGG TCCTCCACAG 180 CCCTCTTCCG GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATG---A--- TTATTGTTAT 80034 || ||||||| |||||||||| |||||||||| |||||||||| ||| | |||||||||| CCTTCTTCCG GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT 240 TGTTATTGTT ATCGTTATTG TTGTTAATAT ATCGTATAAA TGTGTTTTAA TGTTCTTGTT 80094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATTGTT ATCGTTATTG TTGTTAATAT ATCGTATAAA TGTGTTTTAA TGTTCTTGTT 300 TGTGTTAGAT GAGAAATTTG TTGCTAGGTT CTAGTGAGTG AGAAATGAAC TAGGGGCTTG 80154 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TGTGTTAGAT GAGAAATTTG TTGCTAGGTT CTAGTGAGTG AAAAATGAAC TAGGGGCTTG 360 TTCAATTTCA TGAATTATTG CTAGGATTAG GTTTGTTTGC TATATCTCAT TTGTCAAGAG 80214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAATTTCA TGAATTATTG CTAGGATTAG GTTTGTTTGC TATATCTCAT TTGTCAAGAG 420 TTT--ACGTT CACCGAGTTT TGGTGTTGTA AGCTGTGGGA CGATAACACG AAACACAAGC 80272 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACACGTT CACCGAGTTT TGGTGTTGTA AGCTGTGGGA CGATAACACG AAACACAAGC 480 ATCAGGGGAA GTTGTTGCTT GTGATGATGA ATTTGGTGGG GTTTGTTCTG TTGTTTGCAG 80332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGGGAA GTTGTTGCTT GTGATGATGA ATTTGGTGGG GTTTGTTCTG TTGTTTGCAG 540 ACCTCACAAT AAGCTGCTTT GATCACATTG TAACAAGATA TAATAGGGGA TCAGTGTGGA 80392 |||||| ||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ACCTCATAAT AAGCTGCTTT GATCACATTG TAACAAGAGA TAATAGGGGA TCAGTGTGGA 600 CTATGAAAAC CTGTAGTTCC ACATGAATGT TTTGTAAGGA AACCATGGCG GTTTCCGTTG 80452 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGAAAAC TTGTAGTTCC ACATGAATGT TTTGTAAGGA AACCATGGCG GTTTCCGTTG 660 AATTCAATTC TGTAATTTGT TGAAACTATA TCAGTTGTGA GCTTAAACTT TCCTACTCAA 80512 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCATTTC TGTAATTTGT TGAAACTATA TCAGTTGTGA GCTTAAACTT TCCTACTCAA 720 AAGATTGCTA TGGACTTCAA TTTATTACT 80541 |||||||||| |||||||||| ||||||||| AAGATTGCTA TGGACTTCAA TTTATTACT 749 hqPGS_C04HBa0127E11.1+_SGN-E545941- (79801 80541) ******************************************************************************** EST sequence 38 +strand 467 n (File: SGN-E281884+) 1 GCGGCTGCAG CAGCTGCAGC CGCGGCAGCG TTAAGTTCGC AGAGTTCTAG ATTCTTTCAG 61 CAGCAGATGG GTGAGGCTTC AGCTGCTAGA GTTGGGAATT ACTTACCAAT GACTCAAGGG 121 CATCTCAATT TGCTAGCTTC TCTATCAGGT CCTCCACAGC CCTCTTCCGG GAGAAGAGAC 181 GACGACGGAC GTTGAAGATA TGATTATTGT TATTGTTATT GTTATCGTTA TTGTTGTTAA 241 TATATCGTAT AAATGTGTTT TAATGTTCTT GTTTGTGTTA GATGAGAAAT TTGTTGCTAG 301 GTTCTAGTGA GTGAGAAATG AACTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT 361 TAGGTTTGTT TGCTATATCT CATTTGTCAA GAGTTTACGT TCACCGAGTT TTGGTGTTGT 421 AAGCTGTGGG ACGATAACAC GAAACACAAG CATCAGGGGA AGTTGTT Predicted gene structure (within gDNA segment 79222 to 80898): Exon 1 79822 80288 ( 467 n); cDNA 1 467 ( 467 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-E281884+ 1.000 467 1.000 C PGS_C04HBa0127E11.1+_SGN-E281884+ (79822 80288) Alignment (genomic DNA sequence = upper lines): GCGGCTGCAG CAGCTGCAGC CGCGGCAGCG TTAAGTTCGC AGAGTTCTAG ATTCTTTCAG 79881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGCTGCAG CAGCTGCAGC CGCGGCAGCG TTAAGTTCGC AGAGTTCTAG ATTCTTTCAG 60 CAGCAGATGG GTGAGGCTTC AGCTGCTAGA GTTGGGAATT ACTTACCAAT GACTCAAGGG 79941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGATGG GTGAGGCTTC AGCTGCTAGA GTTGGGAATT ACTTACCAAT GACTCAAGGG 120 CATCTCAATT TGCTAGCTTC TCTATCAGGT CCTCCACAGC CCTCTTCCGG GAGAAGAGAC 80001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTCAATT TGCTAGCTTC TCTATCAGGT CCTCCACAGC CCTCTTCCGG GAGAAGAGAC 180 GACGACGGAC GTTGAAGATA TGATTATTGT TATTGTTATT GTTATCGTTA TTGTTGTTAA 80061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGACGGAC GTTGAAGATA TGATTATTGT TATTGTTATT GTTATCGTTA TTGTTGTTAA 240 TATATCGTAT AAATGTGTTT TAATGTTCTT GTTTGTGTTA GATGAGAAAT TTGTTGCTAG 80121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATCGTAT AAATGTGTTT TAATGTTCTT GTTTGTGTTA GATGAGAAAT TTGTTGCTAG 300 GTTCTAGTGA GTGAGAAATG AACTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT 80181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTAGTGA GTGAGAAATG AACTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT 360 TAGGTTTGTT TGCTATATCT CATTTGTCAA GAGTTTACGT TCACCGAGTT TTGGTGTTGT 80241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGTTTGTT TGCTATATCT CATTTGTCAA GAGTTTACGT TCACCGAGTT TTGGTGTTGT 420 AAGCTGTGGG ACGATAACAC GAAACACAAG CATCAGGGGA AGTTGTT 80288 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAGCTGTGGG ACGATAACAC GAAACACAAG CATCAGGGGA AGTTGTT 467 hqPGS_C04HBa0127E11.1+_SGN-E281884+ (79822 80288) ******************************************************************************** EST sequence 60 -strand 507 n (File: SGN-E293361-) 1 TGATTATTGT TATTGTTATT GTTATCGTTA TTGTTGTTAA TATATCGTAT AAATGTGTTT 61 TAATGTTCTT GTTTGTGTTA GATGAGAAAT TTGTTGCTAG GTTCTAGTGA GTGAGAAATG 121 AACTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT TAGGTTTGTT TGCTATATCT 181 CATTTGTCAA GAGTTTACGT TCACCGAGTT TTGGTGTTGT AAGCTGTGGG ACGATAACAC 241 GAAACACCAG CATCAGGGGA AGTTGTTGCT TGTGATGATG AATTTGGTGG GGTTTGTTCT 301 GTTGTTTGCA GACCTCACAA TAAGCTGCTT TGATCACATT GTAACAAGAT ATAATAGGGG 361 ATCAGTGTGG ACTATGAAAA CCTGTAGTTC CACATGAATG TTTTGTAAGG AAACCATGGC 421 GGTTTCCGTT GAATTCAATT CTGTAATTTG TTGAAACTAT ATCAGTTGTG AGCTTAAACT 481 TTCCTACTCA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 79412 to 81254): Exon 1 80022 80514 ( 493 n); cDNA 1 493 ( 493 n); score: 0.998 PPA cDNA 494 507 MATCH C04HBa0127E11.1+ SGN-E293361- 0.998 493 0.972 C PGS_C04HBa0127E11.1+_SGN-E293361- (80022 80514) Alignment (genomic DNA sequence = upper lines): TGATTATTGT TATTGTTATT GTTATCGTTA TTGTTGTTAA TATATCGTAT AAATGTGTTT 80081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTATTGT TATTGTTATT GTTATCGTTA TTGTTGTTAA TATATCGTAT AAATGTGTTT 60 TAATGTTCTT GTTTGTGTTA GATGAGAAAT TTGTTGCTAG GTTCTAGTGA GTGAGAAATG 80141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGTTCTT GTTTGTGTTA GATGAGAAAT TTGTTGCTAG GTTCTAGTGA GTGAGAAATG 120 AACTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT TAGGTTTGTT TGCTATATCT 80201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT TAGGTTTGTT TGCTATATCT 180 CATTTGTCAA GAGTTTACGT TCACCGAGTT TTGGTGTTGT AAGCTGTGGG ACGATAACAC 80261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTGTCAA GAGTTTACGT TCACCGAGTT TTGGTGTTGT AAGCTGTGGG ACGATAACAC 240 GAAACACAAG CATCAGGGGA AGTTGTTGCT TGTGATGATG AATTTGGTGG GGTTTGTTCT 80321 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACACCAG CATCAGGGGA AGTTGTTGCT TGTGATGATG AATTTGGTGG GGTTTGTTCT 300 GTTGTTTGCA GACCTCACAA TAAGCTGCTT TGATCACATT GTAACAAGAT ATAATAGGGG 80381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTTGCA GACCTCACAA TAAGCTGCTT TGATCACATT GTAACAAGAT ATAATAGGGG 360 ATCAGTGTGG ACTATGAAAA CCTGTAGTTC CACATGAATG TTTTGTAAGG AAACCATGGC 80441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGTGTGG ACTATGAAAA CCTGTAGTTC CACATGAATG TTTTGTAAGG AAACCATGGC 420 GGTTTCCGTT GAATTCAATT CTGTAATTTG TTGAAACTAT ATCAGTTGTG AGCTTAAACT 80501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTCCGTT GAATTCAATT CTGTAATTTG TTGAAACTAT ATCAGTTGTG AGCTTAAACT 480 TTCCTACTCA AAA 80514 |||||||||| ||| TTCCTACTCA AAA 493 hqPGS_C04HBa0127E11.1+_SGN-E293361- (80022 80514) ******************************************************************************** EST sequence 87 -strand 398 n (File: SGN-E226551-) 1 AAATTTGTTG CTAGGTTCTA GTGAGTGAAA AATGAACTAG GGGCTTGTTC AATTTCATGA 61 ATTATTGCTA GGATTAGGTT TGTTTGCTAA ATCTCATTTG TCAAGAGTTT ACGTTCACCG 121 AGTTTTGGTG TTGTAAGCTG TGGGGCGATA TACCCGAAAC ACAAGCATCA GGGGAAGTTG 181 TTGCTTGTGA TGATGAATTT GGTGGGGTTT GTTTTGTTGT TTGCAGACCT CCCAATAAGC 241 TGCTTTGATC CCATTGTAAC AAGATATAAT AGGGGATCAG TGTGGGCTAT GAAAACCTGT 301 AGTTCCACAT GAATGTTTTG TAAGGAAACC ATGGCGGTTT CCGTTGAATT CAATTCTGTA 361 ATTTGTTGGA ACTAAAAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 79498 to 81374): Exon 1 80108 80479 ( 372 n); cDNA 1 373 ( 373 n); score: 0.969 PPA cDNA 374 398 MATCH C04HBa0127E11.1+ SGN-E226551- 0.969 372 0.935 C PGS_C04HBa0127E11.1+_SGN-E226551- (80108 80479) Alignment (genomic DNA sequence = upper lines): AAATTTGTTG CTAGGTTCTA GTGAGTGAGA AATGAACTAG GGGCTTGTTC AATTTCATGA 80167 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| AAATTTGTTG CTAGGTTCTA GTGAGTGAAA AATGAACTAG GGGCTTGTTC AATTTCATGA 60 ATTATTGCTA GGATTAGGTT TGTTTGCTAT ATCTCATTTG TCAAGAGTTT ACGTTCACCG 80227 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATTATTGCTA GGATTAGGTT TGTTTGCTAA ATCTCATTTG TCAAGAGTTT ACGTTCACCG 120 AGTTTTGGTG TTGTAAGCTG TGGGACGATA -ACACGAAAC ACAAGCATCA GGGGAAGTTG 80286 |||||||||| |||||||||| |||| ||||| || |||||| |||||||||| |||||||||| AGTTTTGGTG TTGTAAGCTG TGGGGCGATA TACCCGAAAC ACAAGCATCA GGGGAAGTTG 180 TTGCTTGTGA TGATGAATTT GGTGGGGTTT GTTCTGTTGT TTGCAGACCT CACAATAAGC 80346 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| | |||||||| TTGCTTGTGA TGATGAATTT GGTGGGGTTT GTTTTGTTGT TTGCAGACCT CCCAATAAGC 240 TGCTTTGATC ACATTGTAAC AAGATATAAT AGGGGATCAG TGTGGACTAT GAAAACCTGT 80406 |||||||||| ||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TGCTTTGATC CCATTGTAAC AAGATATAAT AGGGGATCAG TGTGGGCTAT GAAAACCTGT 300 AGTTCCACAT GAATGTTTTG TAAGGAAACC ATGGCGGTTT CCGTTGAATT CAATTCTGTA 80466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCACAT GAATGTTTTG TAAGGAAACC ATGGCGGTTT CCGTTGAATT CAATTCTGTA 360 ATTTGTTGAA ACT 80479 |||||||| | ||| ATTTGTTGGA ACT 373 hqPGS_C04HBa0127E11.1+_SGN-E226551- (80108 80479) ******************************************************************************** EST sequence 143 -strand 417 n (File: SGN-E545948-) 1 GTTCTAGTGA GTGAAAAATG AATTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT 61 TAGGTTTGTT TGCTATATCT CATTTGTCAA GAGTTTACAC GTTCACCGAG TTTTGGTGTT 121 GTAAGCTGTG GGACGATACC ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA 181 TGAATTTGGT GGGGTTTGTT CCGTTGTTTG CAGACCTCAT AATAAGCTGC TTTGATCCCA 241 TTGTAACAAG AGATAATAGG GGATCAGTGT GGACTATGAA AACTTGTAGT TCCCCATGAA 301 TGTTTTGTAA GGAAACCATG GCGGTTTCCG TTGAATTCAT TTCTGTAATT TGTTGAAACT 361 ATATCAGTTG TGAGCTTAAA CTTTCCTACT CAAAAGATTG CTATGGACTT CAATTTA Predicted gene structure (within gDNA segment 79305 to 81136): Exon 1 80122 80536 ( 415 n); cDNA 1 417 ( 417 n); score: 0.964 MATCH C04HBa0127E11.1+ SGN-E545948- 0.964 415 0.995 C PGS_C04HBa0127E11.1+_SGN-E545948- (80122 80536) Alignment (genomic DNA sequence = upper lines): GTTCTAGTGA GTGAGAAATG AACTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT 80181 |||||||||| |||| ||||| || ||||||| |||||||||| |||||||||| |||||||||| GTTCTAGTGA GTGAAAAATG AATTAGGGGC TTGTTCAATT TCATGAATTA TTGCTAGGAT 60 TAGGTTTGTT TGCTATATCT CATTTGTCAA GAGTTT--AC GTTCACCGAG TTTTGGTGTT 80239 |||||||||| |||||||||| |||||||||| |||||| || |||||||||| |||||||||| TAGGTTTGTT TGCTATATCT CATTTGTCAA GAGTTTACAC GTTCACCGAG TTTTGGTGTT 120 GTAAGCTGTG GGACGATAAC ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA 80299 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTAAGCTGTG GGACGATACC ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA 180 TGAATTTGGT GGGGTTTGTT CTGTTGTTTG CAGACCTCAC AATAAGCTGC TTTGATCACA 80359 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| ||||||| || TGAATTTGGT GGGGTTTGTT CCGTTGTTTG CAGACCTCAT AATAAGCTGC TTTGATCCCA 240 TTGTAACAAG ATATAATAGG GGATCAGTGT GGACTATGAA AACCTGTAGT TCCACATGAA 80419 |||||||||| | |||||||| |||||||||| |||||||||| ||| |||||| ||| |||||| TTGTAACAAG AGATAATAGG GGATCAGTGT GGACTATGAA AACTTGTAGT TCCCCATGAA 300 TGTTTTGTAA GGAAACCATG GCGGTTTCCG TTGAATTCAA TTCTGTAATT TGTTGAAACT 80479 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGTTTTGTAA GGAAACCATG GCGGTTTCCG TTGAATTCAT TTCTGTAATT TGTTGAAACT 360 ATATCAGTTG TGAGCTTAAA CTTTCCTACT CAAAAGATTG CTATGGACTT CAATTTA 80536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATATCAGTTG TGAGCTTAAA CTTTCCTACT CAAAAGATTG CTATGGACTT CAATTTA 417 hqPGS_C04HBa0127E11.1+_SGN-E545948- (80122 80536) ******************************************************************************** EST sequence 16 +strand 540 n (File: SGN-E253695+) 1 TCAAAATGGA CGGTTAAAGC TGAGGGAAAA AGTCAGCACC ATACAGATAA TTGTAAGATT 61 ATTGAGTTGA CACCATGGGA CATTCTTGAG CTTCAAATTG ACTACTTTCA AACTGGACTC 121 CTCTTCCTCA TGCCTGCATT TGAACAAGTA AGAGATCTAC TAAAAACAAC CAACACCAGT 181 TCCTTAATTG ATCATCTTAG AGTTTCACTA TCTCGAGCTT TAGAGCCTGT TTGGCTCAGC 241 TTAAAAGCTG GTCAAACTGA CTTAAAAGCT GGTTTTTGAC TTATTTAAAT GTTTGGCAAT 301 ACTCAAAATA GCTTATTTTA AGTTAAAAAA ACTTATTTTA AGCCAAAAGT GTGCTTTTTT 361 TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CATATTTTTA TGTTTTTTCC CTTAATATTT 421 TTATACAATC TCCAAATTAC CCATATAACA CTAACTTCTC TTTCTTCTAT TTTTCCCTTT 481 TCACGTTTGG CATAACAACT TCAACACTTT TATCCAAACG CATAATTGCT TATTTTAAAA Predicted gene structure (within gDNA segment 80254 to 84902): Exon 1 80857 80877 ( 21 n); cDNA 186 206 ( 21 n); score: 0.762 Intron 1 80878 83046 (2169 n); Pd: 0.000 (s: 0), Pa: 0.268 (s: 0.80) Exon 2 83047 83351 ( 305 n); cDNA 207 490 ( 284 n); score: 0.839 Intron 2 83352 83809 ( 458 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.86) Exon 3 83810 83859 ( 50 n); cDNA 491 540 ( 50 n); score: 0.860 MATCH C04HBa0127E11.1+ SGN-E253695+ 0.842 376 0.696 C PGS_C04HBa0127E11.1+_SGN-E253695+ (80857 80877,83047 83351,83810 83859) Alignment (genomic DNA sequence = upper lines): AATGGAACAG CTCAAAGTTT CAACAGAAAG AGTATTTGAT GATTATTTAC GTTAATGATC 80916 ||| || || || | ||||| | AATTGATCAT CTTAGAGTTT C......... .......... .......... .......... 206 TTCATGCTAT ATAAGTTCCT CAGTACCACT CAGAAGATTA AACTGTAGTT GTTAAAAATG 80976 .......... .......... .......... .......... .......... .......... 206 TTATAGTATA TCATACATTT ATGGATGACA TGATGCCGTA TTCTATCATG TGCTGCTTCA 81036 .......... .......... .......... .......... .......... .......... 206 ACATGGAGGA GGAAGGAGTT ACACTGCAGC ATCTGGGAGG ATTCTGCTCT GCAGCATCTG 81096 .......... .......... .......... .......... .......... .......... 206 AGATTAACGA CACCTATCAG CTTTAATTTT GCATCAGATT AGGTAAGATG TGGTTATATT 81156 .......... .......... .......... .......... .......... .......... 206 CGCTTTACTT GTGATTCTTT TTGAATCTTA TTAGTTTAGA AGATAAAGCA TATAGATACC 81216 .......... .......... .......... .......... .......... .......... 206 CTGTCAGTTA TCTGGCCTTA GAAAGCGAGA AAACCAATTT TGAGACATCT GATTAGTCTT 81276 .......... .......... .......... .......... .......... .......... 206 ATTTCAAGCT GACAACGAGC TAGCCACACC TTTCTAGCTA TCCCGTTGGG AAAACAAGAA 81336 .......... .......... .......... .......... .......... .......... 206 GGTTTATATA TGTCTTGAAG ATTTGCCCCA ATAGTTCTAA TTTAAATTGG TTCTCTAATA 81396 .......... .......... .......... .......... .......... .......... 206 TAGAGCAAGT GTTTCTTGCT TTGTTTACCT GCATTTCTTT CTTGAGTTGC TGAAGTTTTA 81456 .......... .......... .......... .......... .......... .......... 206 TTAGATTTAA ACTAAAGTCT CCTATGTTTT ATTTACGAGC CGGAGCAATT ATGTTCTCCA 81516 .......... .......... .......... .......... .......... .......... 206 TGATCGATTT CAACTCCACG AGCTGGTTGA TTTTCTTTCT GCATTAATTT CATCTCAAGT 81576 .......... .......... .......... .......... .......... .......... 206 AACCATCCAG AGTAGCAAAT GGTGCAAGAA TACAAACTTT GTTGGATCTG AAGTCTGAAA 81636 .......... .......... .......... .......... .......... .......... 206 GCTTCGGTTG ATTTTCTATT TGCTTCCCAC TTTACGAGAC TATTGATGTA CACTGGAAGG 81696 .......... .......... .......... .......... .......... .......... 206 TAATGTTATT GTTTTCAGCA TGCCTATTTA TCATATTAGT CGTCTTCTCT CGTGTCAAAT 81756 .......... .......... .......... .......... .......... .......... 206 CTTGCTGTAT CTGTTTCTGT TCACATTCAT CTGTTTCAAT CAGAGGAATC TGAATAGAGA 81816 .......... .......... .......... .......... .......... .......... 206 ATAAACATGC CATTTCCGCA TTATTAGATA GATAGTTTGT CTGATATTGG GTAGCATCCA 81876 .......... .......... .......... .......... .......... .......... 206 CTCAATGAAC CTGCTTGTTT AATGATCTCA TTGGATTTTG GGATAAGTCG AGTTTAAGAT 81936 .......... .......... .......... .......... .......... .......... 206 GCGAACCATG GGTACCAAGT ACTTGGAAGC TTTCTATGTA CTCCATGCGT TACTCTTGCC 81996 .......... .......... .......... .......... .......... .......... 206 TCTATTGCTC AAATTCTTCA AAAATGTTGG TGGGTGCGTG TTAGACTCTT GCTAATATGG 82056 .......... .......... .......... .......... .......... .......... 206 TGTTTCATAA CGACTATCAC ATTTGGAATT TCAGTTTAGT TCAAATTCAG CGTTCTCTTT 82116 .......... .......... .......... .......... .......... .......... 206 TCCAGGAGAA TAAGATTGTA TCTACAATCA GTATCGATCA TAGTTGAACC TTGGTCGCCT 82176 .......... .......... .......... .......... .......... .......... 206 TGATTATGTC TATTTGTCTC GTAAATAATT GCATATTTGA AAGAGGGATT TTCAGGGAAC 82236 .......... .......... .......... .......... .......... .......... 206 AACATAAAGC ATGCTCAAGA ACTAACAACT TTTTGAAACT AGTTGTTTTT TGAGAAACAA 82296 .......... .......... .......... .......... .......... .......... 206 TGGAGATTTT ACTTCTCATT TCTCTGTGTG AAGACTGCCT TTTTGTGTCT TACCAACTTT 82356 .......... .......... .......... .......... .......... .......... 206 CTGTATTATT TCAATCACTT GAATGCTTAC TCGTTATTCA TTTCTCCTCA GAACGGAAGT 82416 .......... .......... .......... .......... .......... .......... 206 CTTGGAGCAA TAGTAAACTT ATCTCCGTGT AAGTTCCAAG TCATTGTTTG AGCTGCAGCG 82476 .......... .......... .......... .......... .......... .......... 206 GAACCAACCA CTGAATGCTT GCTTCAGGTG CGGCCCTTCC ACGTACCCTG CATGCAACGG 82536 .......... .......... .......... .......... .......... .......... 206 CTTCCTTTCT AATTCAATTC TGTCTCAGTA CAAATAGTTC ATTGGTTTCT TATAACATAA 82596 .......... .......... .......... .......... .......... .......... 206 TTTTTCCTCA GCCACATAAG AGGAATTATA TATATTCCTT TATTAGGGAT AATTACGATC 82656 .......... .......... .......... .......... .......... .......... 206 CCTAAACACT TCGATAAACT AGTTTATTTA TAAAATACAA ACAATGTATA AGTCGTGTAT 82716 .......... .......... .......... .......... .......... .......... 206 ACTTTACTAA ACATCATATA CTAATACACA ACATATATAC TTAATAGTGT GTATGTTACA 82776 .......... .......... .......... .......... .......... .......... 206 TTTATTTTTT AGTAAACTAG TCGGCTGAAC GGTATATATC TATAACTTTC TTAATTTTTT 82836 .......... .......... .......... .......... .......... .......... 206 TAGAAATAAA CTTCGAACTT TATAGATTCA CAATAGTGTA AACTTTATAG GTTCACTTGA 82896 .......... .......... .......... .......... .......... .......... 206 TTGATTGGTA TCTATATGTT TCTTCTACAT GACTTCAAGT TACGTCTCCT TTGTTATAAT 82956 .......... .......... .......... .......... .......... .......... 206 TGTAATTATA TTTGATTCTA TAACATCAGT TTTGTGTTCT TTTTTCTTTT AAAAAATGCT 83016 .......... .......... .......... .......... .......... .......... 206 TTTAAGTTAG CTAAAAGCTT GGCCAAACAG GCAATAGACA AGTGTTAAGA GCCTGTTTGG 83076 | || | || || ||| |||||||||| .......... .......... .......... ACTAT-CTCG AG-CTTTAGA GCCTGTTTGG 234 CTCAGCTTAA AAACTGGTCA AACTGACTTA AAAACTGGTT TTTGACTTAT TTAGCTGTTT 83136 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||||| ||| ||||| CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAAATGTTT 294 GGCAATACTC AAAATAACTT ATTTTAAGTT TAAAAAAACT TATTTTAGGT CAAAAGTTAA 83196 |||||||||| |||||| ||| |||||||| | |||||||||| || ||| | ||| || GGCAATACTC AAAATAGCTT ATTTTAAG-T TAAAAAAACT TA-TTT---T ---AAGCCAA 346 AAGCTGGGTA GAGATGCTTT TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT 83256 ||| | || | | | |||||||||| |||||||||| |||||||||| |||| || || AAG-T--GT- --G---C--T TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGACCATAT 395 TTTTACGTTT TTGGCCTTAA TATTTTTATA CAATCTCCAA ATTACCTACA TAACTCTAAT 83316 ||||| |||| || |||||| |||||||||| |||||||||| |||||| | | |||| |||| TTTTATGTTT TTTCCCTTAA TATTTTTATA CAATCTCCAA ATTACCCATA TAACACTAAC 455 ATCTCTTTCT TTCATTTTTC CTTTTTCACG TGTGGATGAT AGATAATTAC TATTACTAAT 83376 ||||||||| | ||||||| | |||||||| | ||| TTCTCTTTCT TCTATTTTTC CCTTTTCACG TTTGG..... .......... .......... 490 GAATAAAAAT AAAAAAAATC TTATCTTTCA AGTGATCTAT TCAAATTATA TATTATTAAA 83436 .......... .......... .......... .......... .......... .......... 490 ATGTAAAATA AGTTGCACAT CTAACTTAAA TAAAAATTTA TATTCTTCTT ATAAATAATT 83496 .......... .......... .......... .......... .......... .......... 490 TGTGATAATA AAGAAATATG TGAATGATAG ACAATTATTA TTACCTATGG ATGAAACTAA 83556 .......... .......... .......... .......... .......... .......... 490 AATAAAATCT TAAATCGTTC TTTGATCTTT TCAAATTATA TATCTTTAAA ATCTATAATA 83616 .......... .......... .......... .......... .......... .......... 490 AGTTTATATT CCTCTTATAA ATAATTTGTG ATGAGAAAGA AATATGTGAA TGATAGCAAA 83676 .......... .......... .......... .......... .......... .......... 490 ATATAATTAT TTATGGCTGT AAAATATAAA TTAATTAACT TTTATTATGT TAACAACTTT 83736 .......... .......... .......... .......... .......... .......... 490 TAAGAGTATT TCAGACATTT TGATTTAAAA AGCAGTTTAT CAGCATTTAT TTGCCAAACA 83796 .......... .......... .......... .......... .......... .......... 490 CATCAACAAT TTTTTTTTTA ACTTCAGCAC TTTTATCCAA ACGCATAACT GCTTATTTTA 83856 | | |||||| ||| |||||||||| |||||||| | |||||||||| .......... ...CATAACA ACTTCAACAC TTTTATCCAA ACGCATAATT GCTTATTTTA 537 AAA 83859 ||| AAA 540 hqPGS_C04HBa0127E11.1+_SGN-E253695+ (80857 80877,83047 83351,83810 83859) ******************************************************************************** EST sequence 46 +strand 618 n (File: SGN-E249253+) 1 GGTTACCAGT TCAAGTCCCG TTTCCGGCAA CTTTTCCGGT TATTAAGCTG TTCCGCCGCT 61 GAGCACACTG ATTTAACTTC AGATTTACCC AATACAGAGG TGATTGAAAG CTATGGCTTC 121 CAAGGTATCC ATCATTTCAA AATGGACGGT TAAAGCTGAG GGAAAAAGTC AGCACCATAC 181 AGATAATTGT AAGATTATTG AGTTGACACC ATGGGACATT CTTGAGCTTC AAATTGACTA 241 CTTTCAAACT GGACTCCTCT TCCTCATGCC TGCATTTGAA CAAGTAAGAG ATCTACTAAA 301 AACAACCAAC ACCAGTTCCT TAATTGATCA TCTTAGAGTT TCACTATCTC GAGCTTTAGA 361 GCCTGTTTGG CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT 421 TTAAATGTTT GGCAATACTC AAAATAGCTT ATTTTAAGTT AAAAAAACTT ATTTTAAGCC 481 AAAAGTGTGC CTTTTTTTTT TAGCTTATAA GCTGTTTTAA GTTGACCATA TTTTTATGTT 541 TTTTCCCTTA ATATTTTTAT ACAATCTCCA AATTACCCAT ATAACACTAA CTTCTCTTTC 601 TTCTATTTTT CCCTTTTC Predicted gene structure (within gDNA segment 78894 to 84322): Exon 1 80857 80877 ( 21 n); cDNA 322 342 ( 21 n); score: 0.762 Intron 1 80878 83046 (2169 n); Pd: 0.000 (s: 0), Pa: 0.268 (s: 0.80) Exon 2 83047 83343 ( 297 n); cDNA 343 618 ( 276 n); score: 0.835 MATCH C04HBa0127E11.1+ SGN-E249253+ 0.835 318 0.515 C PGS_C04HBa0127E11.1+_SGN-E249253+ (80857 80877,83047 83343) Alignment (genomic DNA sequence = upper lines): AATGGAACAG CTCAAAGTTT CAACAGAAAG AGTATTTGAT GATTATTTAC GTTAATGATC 80916 ||| || || || | ||||| | AATTGATCAT CTTAGAGTTT C......... .......... .......... .......... 342 TTCATGCTAT ATAAGTTCCT CAGTACCACT CAGAAGATTA AACTGTAGTT GTTAAAAATG 80976 .......... .......... .......... .......... .......... .......... 342 TTATAGTATA TCATACATTT ATGGATGACA TGATGCCGTA TTCTATCATG TGCTGCTTCA 81036 .......... .......... .......... .......... .......... .......... 342 ACATGGAGGA GGAAGGAGTT ACACTGCAGC ATCTGGGAGG ATTCTGCTCT GCAGCATCTG 81096 .......... .......... .......... .......... .......... .......... 342 AGATTAACGA CACCTATCAG CTTTAATTTT GCATCAGATT AGGTAAGATG TGGTTATATT 81156 .......... .......... .......... .......... .......... .......... 342 CGCTTTACTT GTGATTCTTT TTGAATCTTA TTAGTTTAGA AGATAAAGCA TATAGATACC 81216 .......... .......... .......... .......... .......... .......... 342 CTGTCAGTTA TCTGGCCTTA GAAAGCGAGA AAACCAATTT TGAGACATCT GATTAGTCTT 81276 .......... .......... .......... .......... .......... .......... 342 ATTTCAAGCT GACAACGAGC TAGCCACACC TTTCTAGCTA TCCCGTTGGG AAAACAAGAA 81336 .......... .......... .......... .......... .......... .......... 342 GGTTTATATA TGTCTTGAAG ATTTGCCCCA ATAGTTCTAA TTTAAATTGG TTCTCTAATA 81396 .......... .......... .......... .......... .......... .......... 342 TAGAGCAAGT GTTTCTTGCT TTGTTTACCT GCATTTCTTT CTTGAGTTGC TGAAGTTTTA 81456 .......... .......... .......... .......... .......... .......... 342 TTAGATTTAA ACTAAAGTCT CCTATGTTTT ATTTACGAGC CGGAGCAATT ATGTTCTCCA 81516 .......... .......... .......... .......... .......... .......... 342 TGATCGATTT CAACTCCACG AGCTGGTTGA TTTTCTTTCT GCATTAATTT CATCTCAAGT 81576 .......... .......... .......... .......... .......... .......... 342 AACCATCCAG AGTAGCAAAT GGTGCAAGAA TACAAACTTT GTTGGATCTG AAGTCTGAAA 81636 .......... .......... .......... .......... .......... .......... 342 GCTTCGGTTG ATTTTCTATT TGCTTCCCAC TTTACGAGAC TATTGATGTA CACTGGAAGG 81696 .......... .......... .......... .......... .......... .......... 342 TAATGTTATT GTTTTCAGCA TGCCTATTTA TCATATTAGT CGTCTTCTCT CGTGTCAAAT 81756 .......... .......... .......... .......... .......... .......... 342 CTTGCTGTAT CTGTTTCTGT TCACATTCAT CTGTTTCAAT CAGAGGAATC TGAATAGAGA 81816 .......... .......... .......... .......... .......... .......... 342 ATAAACATGC CATTTCCGCA TTATTAGATA GATAGTTTGT CTGATATTGG GTAGCATCCA 81876 .......... .......... .......... .......... .......... .......... 342 CTCAATGAAC CTGCTTGTTT AATGATCTCA TTGGATTTTG GGATAAGTCG AGTTTAAGAT 81936 .......... .......... .......... .......... .......... .......... 342 GCGAACCATG GGTACCAAGT ACTTGGAAGC TTTCTATGTA CTCCATGCGT TACTCTTGCC 81996 .......... .......... .......... .......... .......... .......... 342 TCTATTGCTC AAATTCTTCA AAAATGTTGG TGGGTGCGTG TTAGACTCTT GCTAATATGG 82056 .......... .......... .......... .......... .......... .......... 342 TGTTTCATAA CGACTATCAC ATTTGGAATT TCAGTTTAGT TCAAATTCAG CGTTCTCTTT 82116 .......... .......... .......... .......... .......... .......... 342 TCCAGGAGAA TAAGATTGTA TCTACAATCA GTATCGATCA TAGTTGAACC TTGGTCGCCT 82176 .......... .......... .......... .......... .......... .......... 342 TGATTATGTC TATTTGTCTC GTAAATAATT GCATATTTGA AAGAGGGATT TTCAGGGAAC 82236 .......... .......... .......... .......... .......... .......... 342 AACATAAAGC ATGCTCAAGA ACTAACAACT TTTTGAAACT AGTTGTTTTT TGAGAAACAA 82296 .......... .......... .......... .......... .......... .......... 342 TGGAGATTTT ACTTCTCATT TCTCTGTGTG AAGACTGCCT TTTTGTGTCT TACCAACTTT 82356 .......... .......... .......... .......... .......... .......... 342 CTGTATTATT TCAATCACTT GAATGCTTAC TCGTTATTCA TTTCTCCTCA GAACGGAAGT 82416 .......... .......... .......... .......... .......... .......... 342 CTTGGAGCAA TAGTAAACTT ATCTCCGTGT AAGTTCCAAG TCATTGTTTG AGCTGCAGCG 82476 .......... .......... .......... .......... .......... .......... 342 GAACCAACCA CTGAATGCTT GCTTCAGGTG CGGCCCTTCC ACGTACCCTG CATGCAACGG 82536 .......... .......... .......... .......... .......... .......... 342 CTTCCTTTCT AATTCAATTC TGTCTCAGTA CAAATAGTTC ATTGGTTTCT TATAACATAA 82596 .......... .......... .......... .......... .......... .......... 342 TTTTTCCTCA GCCACATAAG AGGAATTATA TATATTCCTT TATTAGGGAT AATTACGATC 82656 .......... .......... .......... .......... .......... .......... 342 CCTAAACACT TCGATAAACT AGTTTATTTA TAAAATACAA ACAATGTATA AGTCGTGTAT 82716 .......... .......... .......... .......... .......... .......... 342 ACTTTACTAA ACATCATATA CTAATACACA ACATATATAC TTAATAGTGT GTATGTTACA 82776 .......... .......... .......... .......... .......... .......... 342 TTTATTTTTT AGTAAACTAG TCGGCTGAAC GGTATATATC TATAACTTTC TTAATTTTTT 82836 .......... .......... .......... .......... .......... .......... 342 TAGAAATAAA CTTCGAACTT TATAGATTCA CAATAGTGTA AACTTTATAG GTTCACTTGA 82896 .......... .......... .......... .......... .......... .......... 342 TTGATTGGTA TCTATATGTT TCTTCTACAT GACTTCAAGT TACGTCTCCT TTGTTATAAT 82956 .......... .......... .......... .......... .......... .......... 342 TGTAATTATA TTTGATTCTA TAACATCAGT TTTGTGTTCT TTTTTCTTTT AAAAAATGCT 83016 .......... .......... .......... .......... .......... .......... 342 TTTAAGTTAG CTAAAAGCTT GGCCAAACAG GCAATAGACA AGTGTTAAGA GCCTGTTTGG 83076 | || | || || ||| |||||||||| .......... .......... .......... ACTAT-CTCG AG-CTTTAGA GCCTGTTTGG 370 CTCAGCTTAA AAACTGGTCA AACTGACTTA AAAACTGGTT TTTGACTTAT TTAGCTGTTT 83136 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||||| ||| ||||| CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAAATGTTT 430 GGCAATACTC AAAATAACTT ATTTTAAGTT TAAAAAAACT TATTTTAGGT CAAAAGTTAA 83196 |||||||||| |||||| ||| |||||||| | |||||||||| || ||| | ||| || GGCAATACTC AAAATAGCTT ATTTTAAG-T TAAAAAAACT TA-TTT---T ---AAGCCAA 482 AAGCTGGGTA GAGATGCTTT TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT 83256 ||| | | ||| |||||||||| |||||||||| |||||||||| |||| || || AAG-T----- --G-TGC--C TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGACCATAT 531 TTTTACGTTT TTGGCCTTAA TATTTTTATA CAATCTCCAA ATTACCTACA TAACTCTAAT 83316 ||||| |||| || |||||| |||||||||| |||||||||| |||||| | | |||| |||| TTTTATGTTT TTTCCCTTAA TATTTTTATA CAATCTCCAA ATTACCCATA TAACACTAAC 591 ATCTCTTTCT TTCATTTTTC CTTTTTC 83343 ||||||||| | ||||||| | ||||| TTCTCTTTCT TCTATTTTTC CCTTTTC 618 hqPGS_C04HBa0127E11.1+_SGN-E249253+ (80857 80877,83047 83343) ******************************************************************************** EST sequence 1 +strand 387 n (File: SGN-E577960+) 1 CAAAAGTGTA AAACAAGCTC GAAACCTCTC AAAAATCATC CCCCAAATTC AACAAAACAC 61 TCGGAAATTC TGAGCCGAGC ATCCAAACCC CGAATGTTCA CCAAAGTCAA CCCAAAAGCC 121 CACAATTTCA CAACTTAGGA CCTCAAATCC TCAAAAAGAC TCAGAATACG AAACGAACAA 181 CTCTCACAAC TCAGATTCCA CATTCCGGTA CTGATGGTAT TGATGGAACT TTATTCCGAC 241 ACTCGAAGCT CCCAAAGGCT CCAAAAACCA CTTTTGAGCA ACTTAGAGCC TGTTTGGCTC 301 AGCTTAAAAG CTGGTCAAAC TGACTTAAAA GCTGGTTTTT GACTTATTTA ACTGTTTGGC 361 AATACTCAAA ACAGCTTATT TTAAGTT Predicted gene structure (within gDNA segment 78424 to 83920): Exon 1 79174 79202 ( 29 n); cDNA 196 222 ( 27 n); score: 0.690 Intron 1 79203 80102 ( 900 n); Pd: 0.000 (s: 0), Pa: 0.988 (s: 0) Exon 2 80103 80127 ( 25 n); cDNA 223 246 ( 24 n); score: 0.640 Intron 2 80128 80332 ( 205 n); Pd: 0.000 (s: 0), Pa: 0.977 (s: 0) Exon 3 80333 80347 ( 15 n); cDNA 247 260 ( 14 n); score: 0.733 Intron 3 80348 81241 ( 894 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 81242 81267 ( 26 n); cDNA 261 284 ( 24 n); score: 0.769 Intron 4 81268 83063 (1796 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 5 83064 83166 ( 103 n); cDNA 285 387 ( 103 n); score: 0.951 MATCH C04HBa0127E11.1+ SGN-E577960+ 0.951 198 0.512 C PGS_C04HBa0127E11.1+_SGN-E577960+ (79174 79202,80103 80127,80333 80347,81242 81267,83064 83166) Alignment (genomic DNA sequence = upper lines): TTCCACCACT ACCGTTTTTG CTGCTAGTGT TTTGAGCTTC TAATGTCGAC GTCTGCAGAG 79233 ||||| || | ||| | || || || || TTCCA-CA-T TCCGGTACTG ATGGTATTG. .......... .......... .......... 222 GGAAATGGAG CTATAATTGA TCCTCAGAGG CAACAACAAC AGGCGCCTAC TGGGGTTGGT 79293 .......... .......... .......... .......... .......... .......... 222 ACAAATGGTG CTTTAACAGT GAAAAAACCG CCGGTAAAAG ACCGGCATAG TAAGGTTGAT 79353 .......... .......... .......... .......... .......... .......... 222 GGTAGAGGAA GACGTATAAG GATGCCAATT GTATGTGCGG CAAGAGTTTT TCAGCTTACT 79413 .......... .......... .......... .......... .......... .......... 222 CGTGAATTGG GTCATAAATC CGATGGACAA ACTATTGAAT GGCTGCTTCG TCAAGCTGAG 79473 .......... .......... .......... .......... .......... .......... 222 CCTTCAATTA TAGCTGCTAC TGGTACTGGT ACTATTCCTG CTAGTTTCTC GACTGTATCT 79533 .......... .......... .......... .......... .......... .......... 222 GTATCGGTAC GGAACTCAAC TGCATCTCTT GTTTCATCAC TCTCCGCTCC ACTTGATCAG 79593 .......... .......... .......... .......... .......... .......... 222 AAATCATCAC AAATGATTTC ACCGGCGCCG TTTATCCTCG GGAAACGTCT CCGGTCAGAT 79653 .......... .......... .......... .......... .......... .......... 222 GACGAAAACA TTGAAAATGG GAATAAGGAT GATGTAGCTG TGGCTGCCGG AGCTGCTACT 79713 .......... .......... .......... .......... .......... .......... 222 GCTGTGGGTC CCACAGCTGG GTTTTGGGCT GTTCCAGCTA GGCCTGATTT TGGTCAAATT 79773 .......... .......... .......... .......... .......... .......... 222 TGGAGCTTTG CGGCGGCACC GCCACCTGAA ATGATGGTGC CAACCTCCGC GGCTGCAGCA 79833 .......... .......... .......... .......... .......... .......... 222 GCTGCAGCCG CGGCAGCGTT AAGTTCGCAG AGTTCTAGAT TCTTTCAGCA GCAGATGGGT 79893 .......... .......... .......... .......... .......... .......... 222 GAGGCTTCAG CTGCTAGAGT TGGGAATTAC TTACCAATGA CTCAAGGGCA TCTCAATTTG 79953 .......... .......... .......... .......... .......... .......... 222 CTAGCTTCTC TATCAGGTCC TCCACAGCCC TCTTCCGGGA GAAGAGACGA CGACGGACGT 80013 .......... .......... .......... .......... .......... .......... 222 TGAAGATATG ATTATTGTTA TTGTTATTGT TATCGTTATT GTTGTTAATA TATCGTATAA 80073 .......... .......... .......... .......... .......... .......... 222 ATGTGTTTTA ATGTTCTTGT TTGTGTTAGA TGAGAAATTT GTTGCTAGGT TCTAGTGAGT 80133 | || ||| ||| || | | || | .......... .......... .........A TG-GAACTTT ATTCCGACAC TCGA...... 246 GAGAAATGAA CTAGGGGCTT GTTCAATTTC ATGAATTATT GCTAGGATTA GGTTTGTTTG 80193 .......... .......... .......... .......... .......... .......... 246 CTATATCTCA TTTGTCAAGA GTTTACGTTC ACCGAGTTTT GGTGTTGTAA GCTGTGGGAC 80253 .......... .......... .......... .......... .......... .......... 246 GATAACACGA AACACAAGCA TCAGGGGAAG TTGTTGCTTG TGATGATGAA TTTGGTGGGG 80313 .......... .......... .......... .......... .......... .......... 246 TTTGTTCTGT TGTTTGCAGA CCTCACAATA AGCTGCTTTG ATCACATTGT AACAAGATAT 80373 | ||| ||| | ||| .......... .........A GCTCCCAA-A GGCT...... .......... .......... 260 AATAGGGGAT CAGTGTGGAC TATGAAAACC TGTAGTTCCA CATGAATGTT TTGTAAGGAA 80433 .......... .......... .......... .......... .......... .......... 260 ACCATGGCGG TTTCCGTTGA ATTCAATTCT GTAATTTGTT GAAACTATAT CAGTTGTGAG 80493 .......... .......... .......... .......... .......... .......... 260 CTTAAACTTT CCTACTCAAA AGATTGCTAT GGACTTCAAT TTATTACTCA ACTTACATTG 80553 .......... .......... .......... .......... .......... .......... 260 TGTTATCTTG AATGGGTGCT ATAATTAGAT GTTTTCGACA TCTCAATGAT TGAGTTGACA 80613 .......... .......... .......... .......... .......... .......... 260 CCATACTGTA TAAAATGAAA TGGTTCATTT ATTGCATTAC TGGTTACACG TGTCGACTGA 80673 .......... .......... .......... .......... .......... .......... 260 TCAACTAATG CATGGGACAG TGTGAAGTTG AAACATGAAA TGCTGTGGAG GCGAACGTAT 80733 .......... .......... .......... .......... .......... .......... 260 AAGGAGGATA GAACTCTAAA TTTCTATACT CAAGCTTTCT TAGATTGGTT ATGGACCAGA 80793 .......... .......... .......... .......... .......... .......... 260 TAATCTTGCT ACAGCTTGAT GTTTATTCTA TGTATAAATG TGCGATGTGT GCCATAGATT 80853 .......... .......... .......... .......... .......... .......... 260 CGAAATGGAA CAGCTCAAAG TTTCAACAGA AAGAGTATTT GATGATTATT TACGTTAATG 80913 .......... .......... .......... .......... .......... .......... 260 ATCTTCATGC TATATAAGTT CCTCAGTACC ACTCAGAAGA TTAAACTGTA GTTGTTAAAA 80973 .......... .......... .......... .......... .......... .......... 260 ATGTTATAGT ATATCATACA TTTATGGATG ACATGATGCC GTATTCTATC ATGTGCTGCT 81033 .......... .......... .......... .......... .......... .......... 260 TCAACATGGA GGAGGAAGGA GTTACACTGC AGCATCTGGG AGGATTCTGC TCTGCAGCAT 81093 .......... .......... .......... .......... .......... .......... 260 CTGAGATTAA CGACACCTAT CAGCTTTAAT TTTGCATCAG ATTAGGTAAG ATGTGGTTAT 81153 .......... .......... .......... .......... .......... .......... 260 ATTCGCTTTA CTTGTGATTC TTTTTGAATC TTATTAGTTT AGAAGATAAA GCATATAGAT 81213 .......... .......... .......... .......... .......... .......... 260 ACCCTGTCAG TTATCTGGCC TTAGAAAGCG AGAAAACCAA TTTTGAGACA TCTGATTAGT 81273 | | ||||||| ||||||| || || .......... .......... ........CC A-AAAACCAC TTTTGAG-CA ACTT...... 284 CTTATTTCAA GCTGACAACG AGCTAGCCAC ACCTTTCTAG CTATCCCGTT GGGAAAACAA 81333 .......... .......... .......... .......... .......... .......... 284 GAAGGTTTAT ATATGTCTTG AAGATTTGCC CCAATAGTTC TAATTTAAAT TGGTTCTCTA 81393 .......... .......... .......... .......... .......... .......... 284 ATATAGAGCA AGTGTTTCTT GCTTTGTTTA CCTGCATTTC TTTCTTGAGT TGCTGAAGTT 81453 .......... .......... .......... .......... .......... .......... 284 TTATTAGATT TAAACTAAAG TCTCCTATGT TTTATTTACG AGCCGGAGCA ATTATGTTCT 81513 .......... .......... .......... .......... .......... .......... 284 CCATGATCGA TTTCAACTCC ACGAGCTGGT TGATTTTCTT TCTGCATTAA TTTCATCTCA 81573 .......... .......... .......... .......... .......... .......... 284 AGTAACCATC CAGAGTAGCA AATGGTGCAA GAATACAAAC TTTGTTGGAT CTGAAGTCTG 81633 .......... .......... .......... .......... .......... .......... 284 AAAGCTTCGG TTGATTTTCT ATTTGCTTCC CACTTTACGA GACTATTGAT GTACACTGGA 81693 .......... .......... .......... .......... .......... .......... 284 AGGTAATGTT ATTGTTTTCA GCATGCCTAT TTATCATATT AGTCGTCTTC TCTCGTGTCA 81753 .......... .......... .......... .......... .......... .......... 284 AATCTTGCTG TATCTGTTTC TGTTCACATT CATCTGTTTC AATCAGAGGA ATCTGAATAG 81813 .......... .......... .......... .......... .......... .......... 284 AGAATAAACA TGCCATTTCC GCATTATTAG ATAGATAGTT TGTCTGATAT TGGGTAGCAT 81873 .......... .......... .......... .......... .......... .......... 284 CCACTCAATG AACCTGCTTG TTTAATGATC TCATTGGATT TTGGGATAAG TCGAGTTTAA 81933 .......... .......... .......... .......... .......... .......... 284 GATGCGAACC ATGGGTACCA AGTACTTGGA AGCTTTCTAT GTACTCCATG CGTTACTCTT 81993 .......... .......... .......... .......... .......... .......... 284 GCCTCTATTG CTCAAATTCT TCAAAAATGT TGGTGGGTGC GTGTTAGACT CTTGCTAATA 82053 .......... .......... .......... .......... .......... .......... 284 TGGTGTTTCA TAACGACTAT CACATTTGGA ATTTCAGTTT AGTTCAAATT CAGCGTTCTC 82113 .......... .......... .......... .......... .......... .......... 284 TTTTCCAGGA GAATAAGATT GTATCTACAA TCAGTATCGA TCATAGTTGA ACCTTGGTCG 82173 .......... .......... .......... .......... .......... .......... 284 CCTTGATTAT GTCTATTTGT CTCGTAAATA ATTGCATATT TGAAAGAGGG ATTTTCAGGG 82233 .......... .......... .......... .......... .......... .......... 284 AACAACATAA AGCATGCTCA AGAACTAACA ACTTTTTGAA ACTAGTTGTT TTTTGAGAAA 82293 .......... .......... .......... .......... .......... .......... 284 CAATGGAGAT TTTACTTCTC ATTTCTCTGT GTGAAGACTG CCTTTTTGTG TCTTACCAAC 82353 .......... .......... .......... .......... .......... .......... 284 TTTCTGTATT ATTTCAATCA CTTGAATGCT TACTCGTTAT TCATTTCTCC TCAGAACGGA 82413 .......... .......... .......... .......... .......... .......... 284 AGTCTTGGAG CAATAGTAAA CTTATCTCCG TGTAAGTTCC AAGTCATTGT TTGAGCTGCA 82473 .......... .......... .......... .......... .......... .......... 284 GCGGAACCAA CCACTGAATG CTTGCTTCAG GTGCGGCCCT TCCACGTACC CTGCATGCAA 82533 .......... .......... .......... .......... .......... .......... 284 CGGCTTCCTT TCTAATTCAA TTCTGTCTCA GTACAAATAG TTCATTGGTT TCTTATAACA 82593 .......... .......... .......... .......... .......... .......... 284 TAATTTTTCC TCAGCCACAT AAGAGGAATT ATATATATTC CTTTATTAGG GATAATTACG 82653 .......... .......... .......... .......... .......... .......... 284 ATCCCTAAAC ACTTCGATAA ACTAGTTTAT TTATAAAATA CAAACAATGT ATAAGTCGTG 82713 .......... .......... .......... .......... .......... .......... 284 TATACTTTAC TAAACATCAT ATACTAATAC ACAACATATA TACTTAATAG TGTGTATGTT 82773 .......... .......... .......... .......... .......... .......... 284 ACATTTATTT TTTAGTAAAC TAGTCGGCTG AACGGTATAT ATCTATAACT TTCTTAATTT 82833 .......... .......... .......... .......... .......... .......... 284 TTTTAGAAAT AAACTTCGAA CTTTATAGAT TCACAATAGT GTAAACTTTA TAGGTTCACT 82893 .......... .......... .......... .......... .......... .......... 284 TGATTGATTG GTATCTATAT GTTTCTTCTA CATGACTTCA AGTTACGTCT CCTTTGTTAT 82953 .......... .......... .......... .......... .......... .......... 284 AATTGTAATT ATATTTGATT CTATAACATC AGTTTTGTGT TCTTTTTTCT TTTAAAAAAT 83013 .......... .......... .......... .......... .......... .......... 284 GCTTTTAAGT TAGCTAAAAG CTTGGCCAAA CAGGCAATAG ACAAGTGTTA AGAGCCTGTT 83073 |||||||||| .......... .......... .......... .......... .......... AGAGCCTGTT 294 TGGCTCAGCT TAAAAACTGG TCAAACTGAC TTAAAAACTG GTTTTTGACT TATTTAGCTG 83133 |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| |||||| ||| TGGCTCAGCT TAAAAGCTGG TCAAACTGAC TTAAAAGCTG GTTTTTGACT TATTTAACTG 354 TTTGGCAATA CTCAAAATAA CTTATTTTAA GTT 83166 |||||||||| ||||||| | |||||||||| ||| TTTGGCAATA CTCAAAACAG CTTATTTTAA GTT 387 hqPGS_C04HBa0127E11.1+_SGN-E577960+ (81242 81267,83064 83166) ******************************************************************************** EST sequence 68 -strand 580 n (File: SGN-E204223-) 1 TACTCAAAAT AACTTATTTT AAGTTAAAAA AAAAAACTTA TTTTAAGCCA AAAGTTAAAA 61 GCTGGGGTAG GGGTGCTTTT TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CACATTTTTA 121 TCTTTTTGCC CTTAATATTT TTATACAATC TCCAAATTAT CCACATAACT CTAACATCTC 181 TTTCTTCCAT TTTTCCATTT TCACGTTTGG CATAGCAACT TCAACACTTT TATCCAAATG 241 CATAACTTTT AAAAGTACTT TTTTAAAGCT AAGTCCATCC AAACGGGCCC TAAGAATGAA 301 CTCTACATGA ATTTTTCGAT CAAAATAAAC ATAATTTTGT ATAATTAATT ATTTTTAAAA 361 AATTTATGAT TAAACGAGAG TTTAGAGAGT TGATTACCAA GTAGAGCAAC AGTTCCTTCA 421 GTATCAACAC CAATTGATTG AAATCTTGAA AGCACAGATG AGATTGAATC GTTGTGATTA 481 GGGAGGTACT TCTCAACTTC TGAAAAGTAA GTTTCCTTGC TATCTTTCCT TCCTGTTTTC 541 ATTTCAATTT TTATTGGCCC TCCTAACCAA AGAAGACCAT Predicted gene structure (within gDNA segment 82532 to 88110): Exon 1 83142 83358 ( 217 n); cDNA 1 215 ( 215 n); score: 0.850 Intron 1 83359 83814 ( 456 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.79) Exon 2 83815 83856 ( 42 n); cDNA 216 257 ( 42 n); score: 0.786 Intron 2 83857 83895 ( 39 n); Pd: 0.000 (s: 0.79), Pa: 0.000 (s: 0.65) Exon 3 83896 83965 ( 70 n); cDNA 258 328 ( 71 n); score: 0.614 Intron 3 83966 84132 ( 167 n); Pd: 0.874 (s: 0.64), Pa: 0.000 (s: 0.70) Exon 4 84133 84177 ( 45 n); cDNA 329 371 ( 43 n); score: 0.700 Intron 4 84178 85488 (1311 n); Pd: 0.000 (s: 0.70), Pa: 0.972 (s: 0) Exon 5 85489 85521 ( 33 n); cDNA 372 401 ( 30 n); score: 0.576 Intron 5 85522 87219 (1698 n); Pd: 0.369 (s: 0), Pa: 0.860 (s: 0) Exon 6 87220 87237 ( 18 n); cDNA 402 418 ( 17 n); score: 0.667 MATCH C04HBa0127E11.1+ SGN-E204223- 0.793 425 0.733 C PGS_C04HBa0127E11.1+_SGN-E204223- (83142 83358,83815 83856,83896 83965,84133 84177,85489 85521,87220 87237) Alignment (genomic DNA sequence = upper lines): TACTCAAAAT AACTTATTTT AAGTT---TA AAAAAACTTA TTTTAGGTCA AAAGTTAAAA 83198 |||||||||| |||||||||| ||||| | |||||||||| ||||| | || |||||||||| TACTCAAAAT AACTTATTTT AAGTTAAAAA AAAAAACTTA TTTTAAGCCA AAAGTTAAAA 60 GCTGGGTAGA GATGCTTTTT TTTTTTTTAG CTTATAAGCT GTTTTAAGTT GATCACATTT 83258 |||||| | | | | | |||||||||| |||||||||| |||||||||| || ||||||| GCTGGG--G- TAGGGGTGCT TTTTTTTTAG CTTATAAGCT GTTTTAAGTT GACCACATTT 117 TTACGTTTTT GGCCTTAATA TTTTTATACA ATCTCCAAAT TACCTACATA ACTCTAATAT 83318 ||| ||||| | |||||||| |||||||||| |||||||||| || | ||||| ||||||| || TTATCTTTTT GCCCTTAATA TTTTTATACA ATCTCCAAAT TATCCACATA ACTCTAACAT 177 CTCTTTCTTT CATTTTTCCT TTTTCACGTG TGGATGATAG ATAATTACTA TTACTAATGA 83378 ||||||||| ||||||||| ||||||||| ||| |||| CTCTTTCTTC CATTTTTCCA TTTTCACGTT TGG--CATAG .......... .......... 215 ATAAAAATAA AAAAAATCTT ATCTTTCAAG TGATCTATTC AAATTATATA TTATTAAAAT 83438 .......... .......... .......... .......... .......... .......... 215 GTAAAATAAG TTGCACATCT AACTTAAATA AAAATTTATA TTCTTCTTAT AAATAATTTG 83498 .......... .......... .......... .......... .......... .......... 215 TGATAATAAA GAAATATGTG AATGATAGAC AATTATTATT ACCTATGGAT GAAACTAAAA 83558 .......... .......... .......... .......... .......... .......... 215 TAAAATCTTA AATCGTTCTT TGATCTTTTC AAATTATATA TCTTTAAAAT CTATAATAAG 83618 .......... .......... .......... .......... .......... .......... 215 TTTATATTCC TCTTATAAAT AATTTGTGAT GAGAAAGAAA TATGTGAATG ATAGCAAAAT 83678 .......... .......... .......... .......... .......... .......... 215 ATAATTATTT ATGGCTGTAA AATATAAATT AATTAACTTT TATTATGTTA ACAACTTTTA 83738 .......... .......... .......... .......... .......... .......... 215 AGAGTATTTC AGACATTTTG ATTTAAAAAG CAGTTTATCA GCATTTATTT GCCAAACACA 83798 .......... .......... .......... .......... .......... .......... 215 TCAACAATTT TTTTTTTAAC TTCAGCACTT TTATCCAAAC GCATAACTGC TTATTTTAAA 83858 ||| |||| ||||| ||||||||| |||||||| | | || .......... ......CAAC TTCAACACTT TTATCCAAAT GCATAACTTT TAAAAGTA.. 257 AATAAGTTTC AGCAATTTCA AAAGTATTTT TTTAAAGCTG TTTT-TATC- AAGCCCATCC 83916 || |||| | | ||| |||||| .......... .......... .......... .......CTT TTTTAAAGCT AAGTCCATCC 280 AAACGGGCAC TTATTATGGC CGTCTATACG ATGTAGGCGA CCACATTACG TGAATATCAT 83976 |||||||| | | | ||| | |||| | | | | ||| || | || AAACGGGCCC TAAGAATGAA C-TCTACATG AATTTTTCGA TCAAAATAA. .......... 328 TATTCACAAT AATATCGTGT TCAATGTAAT TCAATAAGAT TTAGAAATGA TTTTATGTAC 84036 .......... .......... .......... .......... .......... .......... 328 ATAAATCTTA CTCTATACAA TTTCCGCTCT ATCGAATGCC AATAGTATGG TCTAAATATC 84096 .......... .......... .......... .......... .......... .......... 328 TAAATAATCG TCGCTTTGGT AATTCACAAT AAATAGAAAT AATTTAGTA- AATTATTTTA 84155 | || ||||| ||| ||||| ||| .......... .......... .......... ......ACAT AATTTTGTAT AATTA-ATTA 351 TATTTATTTA TTTTGACTGA TTTTAAAATT AACCCTAAAA TTTCATAAGC AATCTTAAGC 84215 | |||| | ||| | ||| || TTTTTAAAAA ATTT-A-TGA TT........ .......... .......... .......... 371 GTACCTCCTA AGATTTTAGA ACGTAGAAAA ACAACAATTT TCAAAAGCTA ATCCCAAATT 84275 .......... .......... .......... .......... .......... .......... 371 CCAAAAATTT TCCGATCGGA GATTTTTTTT TCCGATCAGA AACAGAAAAT AAAAATGGCA 84335 .......... .......... .......... .......... .......... .......... 371 GTGAATCCTC AATTATTTCC TAATGGAATG CCAATTCCTT TCCTCAATGA ATTGTTCGTC 84395 .......... .......... .......... .......... .......... .......... 371 CTATCTAGAC ATGGTGTTGA GTTTGAGGTT GACAAAATCC CTGGGTGAGT TCATCTTATT 84455 .......... .......... .......... .......... .......... .......... 371 TAGCGAATTC AGAATTTTCA TTTAGGGATT CGTAAAAAAA AATGCTTAAT TTTTGAACTT 84515 .......... .......... .......... .......... .......... .......... 371 GAAACCTCGA TATGAAATTT GAGCCCCTCA ATATTCAAAA TTTATTGTAA TATGTAAGAA 84575 .......... .......... .......... .......... .......... .......... 371 TTATCTTATC TATATGGTGT AATTTGTGAA TCCTCTCTAT TCGTGTATAT GAAGAAAAAA 84635 .......... .......... .......... .......... .......... .......... 371 AAAACTCTGA AAGTATTTAT GTATAATTTT ATGCAAATAT TATGAGAAGT GGAGGTGACA 84695 .......... .......... .......... .......... .......... .......... 371 GCAGGGGCGG AGCTAATTAG GTTCCTTTTG ATAGAAAATT ATACTGTTTA TATATGGTTA 84755 .......... .......... .......... .......... .......... .......... 371 AAATTATTTT TTGTGCCCAT ATCTCTATGT ATATATATAT ATTAGATGTT GAACCCCTCA 84815 .......... .......... .......... .......... .......... .......... 371 ATGAAAATAT TGGCTTCGAT GAGGTTAGTT GGAGGATGAG GACGATAAAA TCGATGTGAA 84875 .......... .......... .......... .......... .......... .......... 371 GTGTCAAATA TGGTTAAATG TATTTGCTTT ACTTTTTTGA GTTCCTTGTT TTTCAAACAC 84935 .......... .......... .......... .......... .......... .......... 371 ATGATTCTTG CATTGCCTTC ATTGTTTTTT ATTAGTTCAT GAAGCTGTGT TAATGAGACT 84995 .......... .......... .......... .......... .......... .......... 371 GTTTGTTATC AGTGTAGGAA AAACAAGAAC AAGAGGTACA ATCTACTTGT CGAATATTCG 85055 .......... .......... .......... .......... .......... .......... 371 GATGGTCTTT GTTGCAAAGA TGCCTGTGGA TTTCATTGCT TTTGATATGC CTTTGGTATG 85115 .......... .......... .......... .......... .......... .......... 371 TTATACTTCT ATGTCTTTTT ACCGTCCTCC GATTTTGCAA ACACCACATG CTAACCAACT 85175 .......... .......... .......... .......... .......... .......... 371 CTATTCACTC ATGACTGGTA TAGTTTTTCT GTGGATCAGA GAAGAAAATC GCGAAAACTC 85235 .......... .......... .......... .......... .......... .......... 371 TCTTTTGTTA CTCTTACTAT TATATTAACA AGTTACTATG GCGCTCCTTC AGTATCTGCT 85295 .......... .......... .......... .......... .......... .......... 371 GTAACTAGAC CAACATATGC ATAATGTGCA ATTCAGAATG GCGATTCCAA GTATAACGAT 85355 .......... .......... .......... .......... .......... .......... 371 TAGCGATATT TCTTTTGTTG CTTCTTTTTG AGGCTGAACA AAACTTTGTG TATGATATGC 85415 .......... .......... .......... .......... .......... .......... 371 TTCTGAATCC TGTAGTTTTG TTCTCTCTTT GAAATACATT TTAGAAAGTC GTATTTTACT 85475 .......... .......... .......... .......... .......... .......... 371 ATGTGCAATT CAGAATGGCG CGTAGTAGAG CAGATATATC ACTTTGGTCA AATACGATCC 85535 || | | || ||||| || | || || | .......... ...AAACGAG AGT-TTAGAG -AG-TTGATT ACCAAG.... .......... 401 TTCTCCTATG AAACTGTACT GTTTGTTTCT AAAGCTTTGA CATGTTAATT GAATGGTATT 85595 .......... .......... .......... .......... .......... .......... 401 ATGACATGAT TTATATCTGA TTTGTATATT AAGCACAACA TTGCTAGATA CAACATCTGC 85655 .......... .......... .......... .......... .......... .......... 401 TAGGAAGCAT GTTATGGCAT ATATTGTTCG GATATTTGTT AAGATGCATG ACATGAATTC 85715 .......... .......... .......... .......... .......... .......... 401 GTGTTCATCT GTTCTATGTT TTTGTTCAGA GAAATAATCT GGTAAGTTGG TGACTTTGCT 85775 .......... .......... .......... .......... .......... .......... 401 GAGCAAGAAG TTACAAAACT GAGAAATGTA AGCTACATTT GCTTTGACAA AGTTTATTTA 85835 .......... .......... .......... .......... .......... .......... 401 CCTTTTTTCA TTCTGCAGCT TTTTGTTTCT GATGAAATAT TTACGCAACC AGTATTCCAC 85895 .......... .......... .......... .......... .......... .......... 401 TGCAACAACA TCTCTGGATT TGTAGATCCG GTAAGCTGAA TTACTATTTT CGAATATACT 85955 .......... .......... .......... .......... .......... .......... 401 CAATGTTGTC TAAGGTGCAC TTTAAGCGCA CTTAAGGGTG AAGCGAGGTG CAAAGTATGT 86015 .......... .......... .......... .......... .......... .......... 401 TGAGCTTAGC TGGCGCGTTA GTGCCGTCAT CAAGGCTCTA GCACCTTGTC AATGACTCTA 86075 .......... .......... .......... .......... .......... .......... 401 AATGCTAAAT TCTCTCCTTA TATTTGTTAT TATAATCATT AGTCTAGGAC TACACATACA 86135 .......... .......... .......... .......... .......... .......... 401 TATTTGTGAT TTTCTCCACC ACATTTTATC TATGCTTATA GCCCCAACGA ACCTTAGAGA 86195 .......... .......... .......... .......... .......... .......... 401 CTTTTTGCTC TTTTTGCTTT CGAAAACACT GGATTATGTG CGTGCAACAT TAGATAACCG 86255 .......... .......... .......... .......... .......... .......... 401 ATTATGGCTA TGTTCAGGTT GTTCCAGATA ATGAAAACAG TGCCTTGTAC TCCACACATA 86315 .......... .......... .......... .......... .......... .......... 401 CATTCAAGAT TTTGTTCAAG GATGGTGGTT GTGGGACTTT CGTGCCATTA TTTTTCAACT 86375 .......... .......... .......... .......... .......... .......... 401 TAATCGCCTC TGTGAGACGA GCTCAGCAAC AGTCTGGGGT ACAGCCACGG GCAGACCCTC 86435 .......... .......... .......... .......... .......... .......... 401 TCCAAGCTGC ACAAACTCCA GTTGATGAGA TGATTAGACA TGCGTATGTC AACGTTGCTT 86495 .......... .......... .......... .......... .......... .......... 401 TCTCCTTTTT ACAACGACAT TAGTTAACGA TCCTTTCCCC CCCTCAATAT GCTAACTGGT 86555 .......... .......... .......... .......... .......... .......... 401 TTTACTGAAT TCTTATGGTG TTTGTTGATT TTGCAGTTAT GTCGATCCCA ATGATCCAAC 86615 .......... .......... .......... .......... .......... .......... 401 GAAAATCTTC TTGCAGCAGC CTACTCCAGA GTCGCAACTT AGGCGTCGTT CATACCAATC 86675 .......... .......... .......... .......... .......... .......... 401 ACAACCTGCT TAAAACTCAA TATACTTCTT GTTCAATGCA ACCTGAATTG TGAATTGTTC 86735 .......... .......... .......... .......... .......... .......... 401 ATTTCCTGAT GTACTTTTTC TCTTGGTGAT TGCTTTGATT CTATTAAAAT ATATAAACAA 86795 .......... .......... .......... .......... .......... .......... 401 ACTAGAAGAA AATGGGCTTG CATGTGTATA TGCAGTTGGT ATACATATTT TCTTCAAGTG 86855 .......... .......... .......... .......... .......... .......... 401 TACAGAGGTT ATAATATATT TAATGGTACG TTTATCTCGA TATATGTGAT GTAGACGTCT 86915 .......... .......... .......... .......... .......... .......... 401 ACTCTAATGC AAGCATTAGT GATTATTTCC AGTTTTCTAC AGATTGAACA CGTGACTTAT 86975 .......... .......... .......... .......... .......... .......... 401 ATCACGTGGA GACAATTTGA CTGTCACTCC AAGACTCCTC TTGTTAATAT ATAGTACAGA 87035 .......... .......... .......... .......... .......... .......... 401 TGTACTCAAG TGACCAAAAA ATGCTTTAAA TACAGGAGGT AAAATAATGC AGCATGTTTC 87095 .......... .......... .......... .......... .......... .......... 401 TGAATAAACA ATATGTTACA AAATCACCTT TTATTCAACA GAACAAAAAC TTAAAAAGGA 87155 .......... .......... .......... .......... .......... .......... 401 AAATCTCTCC ATCTAGCATA CAAAAAGAAA TATAGTGGTT AAATTTGCTT CAAAACTTTT 87215 .......... .......... .......... .......... .......... .......... 401 TCAGCTGCAG CTACAGTCCT TT 87237 | || | ||||| | || ....-TAGAG CAACAGTTCC TT 418 hqPGS_C04HBa0127E11.1+_SGN-E204223- (83142 83358,83815 83856) ******************************************************************************** EST sequence 86 -strand 554 n (File: SGN-E374844-) 1 AAAAAAAAAA CTTATATTAA GCCAAAAGTT AAAAGCTGGG GTAGGGGTGC TTTTTTTTTA 61 GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT TGCCCTTAAT ATTTTTATAC 121 AATCTCCAAA TTATCCACAT AACTCTAACA TCTCTTTCTT CCATTTTTCC ATTTTCACGT 181 TTGGCATAGC AACTTCAACA CTTTTATCCA AATGCATAAC TTTTAAAAGT ACTTTTTTAA 241 AGCTAAGTCC ATCCAAACGG GCCCTAAGAA TGAACTCTAC ATGAATTTTT CGATCAAAAT 301 AAACATAATT TTGTATAATT AATTATTTTT AAAAAATTTA TGATTAAACG AGAGTTTAGA 361 GAGTTGATTA CCAAGTAGAG CAACAGTTCC TTCAGTATCA ACACCAATTG ATTGAAATCT 421 TGAAAGCACA GATGAGATTG AATCGTTGTG ATTAGGGAGG TACTTCTCAA CTTCTGAAAA 481 GTAAGTTTCC TTGCTATCTT TCCTTCCTGT TTTCATTTCA ATTTTTATTG GCCCTCCTAA 541 CCAAAGAAGA CCAT Predicted gene structure (within gDNA segment 82357 to 88110): Exon 1 83168 83358 ( 191 n); cDNA 4 189 ( 186 n); score: 0.869 Intron 1 83359 83814 ( 456 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.79) Exon 2 83815 83856 ( 42 n); cDNA 190 231 ( 42 n); score: 0.786 Intron 2 83857 83895 ( 39 n); Pd: 0.000 (s: 0.79), Pa: 0.000 (s: 0.65) Exon 3 83896 83965 ( 70 n); cDNA 232 302 ( 71 n); score: 0.614 Intron 3 83966 84132 ( 167 n); Pd: 0.874 (s: 0.64), Pa: 0.000 (s: 0.70) Exon 4 84133 84177 ( 45 n); cDNA 303 345 ( 43 n); score: 0.700 Intron 4 84178 85488 (1311 n); Pd: 0.000 (s: 0.70), Pa: 0.972 (s: 0) Exon 5 85489 85521 ( 33 n); cDNA 346 375 ( 30 n); score: 0.576 Intron 5 85522 87219 (1698 n); Pd: 0.369 (s: 0), Pa: 0.860 (s: 0) Exon 6 87220 87237 ( 18 n); cDNA 376 392 ( 17 n); score: 0.667 MATCH C04HBa0127E11.1+ SGN-E374844- 0.801 399 0.720 C PGS_C04HBa0127E11.1+_SGN-E374844- (83168 83358,83815 83856,83896 83965,84133 84177,85489 85521,87220 87237) Alignment (genomic DNA sequence = upper lines): AAAAAAACTT ATTTTAGGTC AAAAGTTAAA AGCTGGGTAG AGATGCTTTT TTTTTTTTTA 83227 |||||||||| || ||| | | |||||||||| ||||||| | | | | |||||||||| AAAAAAACTT ATATTAAGCC AAAAGTTAAA AGCTGGG--G -TAGGGGTGC TTTTTTTTTA 60 GCTTATAAGC TGTTTTAAGT TGATCACATT TTTACGTTTT TGGCCTTAAT ATTTTTATAC 83287 |||||||||| |||||||||| ||| |||||| |||| |||| || ||||||| |||||||||| GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT TGCCCTTAAT ATTTTTATAC 120 AATCTCCAAA TTACCTACAT AACTCTAATA TCTCTTTCTT TCATTTTTCC TTTTTCACGT 83347 |||||||||| ||| | |||| |||||||| | |||||||||| ||||||||| ||||||||| AATCTCCAAA TTATCCACAT AACTCTAACA TCTCTTTCTT CCATTTTTCC ATTTTCACGT 180 GTGGATGATA GATAATTACT ATTACTAATG AATAAAAATA AAAAAAATCT TATCTTTCAA 83407 ||| ||| | TTGG--CATA G......... .......... .......... .......... .......... 189 GTGATCTATT CAAATTATAT ATTATTAAAA TGTAAAATAA GTTGCACATC TAACTTAAAT 83467 .......... .......... .......... .......... .......... .......... 189 AAAAATTTAT ATTCTTCTTA TAAATAATTT GTGATAATAA AGAAATATGT GAATGATAGA 83527 .......... .......... .......... .......... .......... .......... 189 CAATTATTAT TACCTATGGA TGAAACTAAA ATAAAATCTT AAATCGTTCT TTGATCTTTT 83587 .......... .......... .......... .......... .......... .......... 189 CAAATTATAT ATCTTTAAAA TCTATAATAA GTTTATATTC CTCTTATAAA TAATTTGTGA 83647 .......... .......... .......... .......... .......... .......... 189 TGAGAAAGAA ATATGTGAAT GATAGCAAAA TATAATTATT TATGGCTGTA AAATATAAAT 83707 .......... .......... .......... .......... .......... .......... 189 TAATTAACTT TTATTATGTT AACAACTTTT AAGAGTATTT CAGACATTTT GATTTAAAAA 83767 .......... .......... .......... .......... .......... .......... 189 GCAGTTTATC AGCATTTATT TGCCAAACAC ATCAACAATT TTTTTTTTAA CTTCAGCACT 83827 || ||||| |||| .......... .......... .......... .......... .......CAA CTTCAACACT 202 TTTATCCAAA CGCATAACTG CTTATTTTAA AAATAAGTTT CAGCAATTTC AAAAGTATTT 83887 |||||||||| |||||||| | | || TTTATCCAAA TGCATAACTT TTAAAAGTA. .......... .......... .......... 231 TTTTAAAGCT GTTTT-TATC -AAGCCCATC CAAACGGGCA CTTATTATGG CCGTCTATAC 83945 || |||| | | ||| ||||| ||||||||| || | ||| | |||| | ........CT TTTTTAAAGC TAAGTCCATC CAAACGGGCC CTAAGAATGA AC-TCTACAT 282 GATGTAGGCG ACCACATTAC GTGAATATCA TTATTCACAA TAATATCGTG TTCAATGTAA 84005 || | || | || | || GAATTTTTCG ATCAAAATAA .......... .......... .......... .......... 302 TTCAATAAGA TTTAGAAATG ATTTTATGTA CATAAATCTT ACTCTATACA ATTTCCGCTC 84065 .......... .......... .......... .......... .......... .......... 302 TATCGAATGC CAATAGTATG GTCTAAATAT CTAAATAATC GTCGCTTTGG TAATTCACAA 84125 .......... .......... .......... .......... .......... .......... 302 TAAATAGAAA TAATTTAGTA -AATTATTTT ATATTTATTT ATTTTGACTG ATTTTAAAAT 84184 | | |||||| ||| ||||| || || |||| | ||| | || ||| .......ACA TAATTTTGTA TAATTA-ATT ATTTTTAAAA AATTT-A-TG ATT....... 345 TAACCCTAAA ATTTCATAAG CAATCTTAAG CGTACCTCCT AAGATTTTAG AACGTAGAAA 84244 .......... .......... .......... .......... .......... .......... 345 AACAACAATT TTCAAAAGCT AATCCCAAAT TCCAAAAATT TTCCGATCGG AGATTTTTTT 84304 .......... .......... .......... .......... .......... .......... 345 TTCCGATCAG AAACAGAAAA TAAAAATGGC AGTGAATCCT CAATTATTTC CTAATGGAAT 84364 .......... .......... .......... .......... .......... .......... 345 GCCAATTCCT TTCCTCAATG AATTGTTCGT CCTATCTAGA CATGGTGTTG AGTTTGAGGT 84424 .......... .......... .......... .......... .......... .......... 345 TGACAAAATC CCTGGGTGAG TTCATCTTAT TTAGCGAATT CAGAATTTTC ATTTAGGGAT 84484 .......... .......... .......... .......... .......... .......... 345 TCGTAAAAAA AAATGCTTAA TTTTTGAACT TGAAACCTCG ATATGAAATT TGAGCCCCTC 84544 .......... .......... .......... .......... .......... .......... 345 AATATTCAAA ATTTATTGTA ATATGTAAGA ATTATCTTAT CTATATGGTG TAATTTGTGA 84604 .......... .......... .......... .......... .......... .......... 345 ATCCTCTCTA TTCGTGTATA TGAAGAAAAA AAAAACTCTG AAAGTATTTA TGTATAATTT 84664 .......... .......... .......... .......... .......... .......... 345 TATGCAAATA TTATGAGAAG TGGAGGTGAC AGCAGGGGCG GAGCTAATTA GGTTCCTTTT 84724 .......... .......... .......... .......... .......... .......... 345 GATAGAAAAT TATACTGTTT ATATATGGTT AAAATTATTT TTTGTGCCCA TATCTCTATG 84784 .......... .......... .......... .......... .......... .......... 345 TATATATATA TATTAGATGT TGAACCCCTC AATGAAAATA TTGGCTTCGA TGAGGTTAGT 84844 .......... .......... .......... .......... .......... .......... 345 TGGAGGATGA GGACGATAAA ATCGATGTGA AGTGTCAAAT ATGGTTAAAT GTATTTGCTT 84904 .......... .......... .......... .......... .......... .......... 345 TACTTTTTTG AGTTCCTTGT TTTTCAAACA CATGATTCTT GCATTGCCTT CATTGTTTTT 84964 .......... .......... .......... .......... .......... .......... 345 TATTAGTTCA TGAAGCTGTG TTAATGAGAC TGTTTGTTAT CAGTGTAGGA AAAACAAGAA 85024 .......... .......... .......... .......... .......... .......... 345 CAAGAGGTAC AATCTACTTG TCGAATATTC GGATGGTCTT TGTTGCAAAG ATGCCTGTGG 85084 .......... .......... .......... .......... .......... .......... 345 ATTTCATTGC TTTTGATATG CCTTTGGTAT GTTATACTTC TATGTCTTTT TACCGTCCTC 85144 .......... .......... .......... .......... .......... .......... 345 CGATTTTGCA AACACCACAT GCTAACCAAC TCTATTCACT CATGACTGGT ATAGTTTTTC 85204 .......... .......... .......... .......... .......... .......... 345 TGTGGATCAG AGAAGAAAAT CGCGAAAACT CTCTTTTGTT ACTCTTACTA TTATATTAAC 85264 .......... .......... .......... .......... .......... .......... 345 AAGTTACTAT GGCGCTCCTT CAGTATCTGC TGTAACTAGA CCAACATATG CATAATGTGC 85324 .......... .......... .......... .......... .......... .......... 345 AATTCAGAAT GGCGATTCCA AGTATAACGA TTAGCGATAT TTCTTTTGTT GCTTCTTTTT 85384 .......... .......... .......... .......... .......... .......... 345 GAGGCTGAAC AAAACTTTGT GTATGATATG CTTCTGAATC CTGTAGTTTT GTTCTCTCTT 85444 .......... .......... .......... .......... .......... .......... 345 TGAAATACAT TTTAGAAAGT CGTATTTTAC TATGTGCAAT TCAGAATGGC GCGTAGTAGA 85504 || | | || |||| .......... .......... .......... .......... ....AAACGA GAGT-TTAGA 360 GCAGATATAT CACTTTGGTC AAATACGATC CTTCTCCTAT GAAACTGTAC TGTTTGTTTC 85564 | || | || || | G-AG-TTGAT TACCAAG... .......... .......... .......... .......... 375 TAAAGCTTTG ACATGTTAAT TGAATGGTAT TATGACATGA TTTATATCTG ATTTGTATAT 85624 .......... .......... .......... .......... .......... .......... 375 TAAGCACAAC ATTGCTAGAT ACAACATCTG CTAGGAAGCA TGTTATGGCA TATATTGTTC 85684 .......... .......... .......... .......... .......... .......... 375 GGATATTTGT TAAGATGCAT GACATGAATT CGTGTTCATC TGTTCTATGT TTTTGTTCAG 85744 .......... .......... .......... .......... .......... .......... 375 AGAAATAATC TGGTAAGTTG GTGACTTTGC TGAGCAAGAA GTTACAAAAC TGAGAAATGT 85804 .......... .......... .......... .......... .......... .......... 375 AAGCTACATT TGCTTTGACA AAGTTTATTT ACCTTTTTTC ATTCTGCAGC TTTTTGTTTC 85864 .......... .......... .......... .......... .......... .......... 375 TGATGAAATA TTTACGCAAC CAGTATTCCA CTGCAACAAC ATCTCTGGAT TTGTAGATCC 85924 .......... .......... .......... .......... .......... .......... 375 GGTAAGCTGA ATTACTATTT TCGAATATAC TCAATGTTGT CTAAGGTGCA CTTTAAGCGC 85984 .......... .......... .......... .......... .......... .......... 375 ACTTAAGGGT GAAGCGAGGT GCAAAGTATG TTGAGCTTAG CTGGCGCGTT AGTGCCGTCA 86044 .......... .......... .......... .......... .......... .......... 375 TCAAGGCTCT AGCACCTTGT CAATGACTCT AAATGCTAAA TTCTCTCCTT ATATTTGTTA 86104 .......... .......... .......... .......... .......... .......... 375 TTATAATCAT TAGTCTAGGA CTACACATAC ATATTTGTGA TTTTCTCCAC CACATTTTAT 86164 .......... .......... .......... .......... .......... .......... 375 CTATGCTTAT AGCCCCAACG AACCTTAGAG ACTTTTTGCT CTTTTTGCTT TCGAAAACAC 86224 .......... .......... .......... .......... .......... .......... 375 TGGATTATGT GCGTGCAACA TTAGATAACC GATTATGGCT ATGTTCAGGT TGTTCCAGAT 86284 .......... .......... .......... .......... .......... .......... 375 AATGAAAACA GTGCCTTGTA CTCCACACAT ACATTCAAGA TTTTGTTCAA GGATGGTGGT 86344 .......... .......... .......... .......... .......... .......... 375 TGTGGGACTT TCGTGCCATT ATTTTTCAAC TTAATCGCCT CTGTGAGACG AGCTCAGCAA 86404 .......... .......... .......... .......... .......... .......... 375 CAGTCTGGGG TACAGCCACG GGCAGACCCT CTCCAAGCTG CACAAACTCC AGTTGATGAG 86464 .......... .......... .......... .......... .......... .......... 375 ATGATTAGAC ATGCGTATGT CAACGTTGCT TTCTCCTTTT TACAACGACA TTAGTTAACG 86524 .......... .......... .......... .......... .......... .......... 375 ATCCTTTCCC CCCCTCAATA TGCTAACTGG TTTTACTGAA TTCTTATGGT GTTTGTTGAT 86584 .......... .......... .......... .......... .......... .......... 375 TTTGCAGTTA TGTCGATCCC AATGATCCAA CGAAAATCTT CTTGCAGCAG CCTACTCCAG 86644 .......... .......... .......... .......... .......... .......... 375 AGTCGCAACT TAGGCGTCGT TCATACCAAT CACAACCTGC TTAAAACTCA ATATACTTCT 86704 .......... .......... .......... .......... .......... .......... 375 TGTTCAATGC AACCTGAATT GTGAATTGTT CATTTCCTGA TGTACTTTTT CTCTTGGTGA 86764 .......... .......... .......... .......... .......... .......... 375 TTGCTTTGAT TCTATTAAAA TATATAAACA AACTAGAAGA AAATGGGCTT GCATGTGTAT 86824 .......... .......... .......... .......... .......... .......... 375 ATGCAGTTGG TATACATATT TTCTTCAAGT GTACAGAGGT TATAATATAT TTAATGGTAC 86884 .......... .......... .......... .......... .......... .......... 375 GTTTATCTCG ATATATGTGA TGTAGACGTC TACTCTAATG CAAGCATTAG TGATTATTTC 86944 .......... .......... .......... .......... .......... .......... 375 CAGTTTTCTA CAGATTGAAC ACGTGACTTA TATCACGTGG AGACAATTTG ACTGTCACTC 87004 .......... .......... .......... .......... .......... .......... 375 CAAGACTCCT CTTGTTAATA TATAGTACAG ATGTACTCAA GTGACCAAAA AATGCTTTAA 87064 .......... .......... .......... .......... .......... .......... 375 ATACAGGAGG TAAAATAATG CAGCATGTTT CTGAATAAAC AATATGTTAC AAAATCACCT 87124 .......... .......... .......... .......... .......... .......... 375 TTTATTCAAC AGAACAAAAA CTTAAAAAGG AAAATCTCTC CATCTAGCAT ACAAAAAGAA 87184 .......... .......... .......... .......... .......... .......... 375 ATATAGTGGT TAAATTTGCT TCAAAACTTT TTCAGCTGCA GCTACAGTCC TTT 87237 | | || ||||| | || .......... .......... .......... .....-TAGA GCAACAGTTC CTT 392 hqPGS_C04HBa0127E11.1+_SGN-E374844- (83168 83358,83815 83856) ******************************************************************************** EST sequence 56 -strand 506 n (File: SGN-E578392-) 1 TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT CTTTATCTTT TTGCCCTTAA 61 TATTTTTATA CAATTTCCAA GTTACACATA TAACCCTAAC ATCTCTTTCT TCCATTTTTC 121 GCTTTTCACG TTTGGCATAA CAACTTCAGC ACTTTTATCC AAATGCATAA CTGTTTATTT 181 TAGAAATAAG TTTCAGCACT TTCAAAAGTA CTTTTTTAAA GCTGTTTTTA TTAAGCCCAT 241 CCAAACGGGC CCTAAATAAG AAAATATTCT GACAAAAATT CTCATAAATT AATTTAGACT 301 ATATATTATT TTTAATTTCT TACCCAGTAA ACTAATAAAT GAGTAGGTCA ATAACTTTAA 361 TTTCCCAAAC TTAGGTGGAT TAGACATGTT AGGTTGATAA ACTAACTCTG TCACCTTTAT 421 CTATATTTAT GTCTTTAATA ATATATGAGA TTTGACTTCG TTATATATAT CGAACATCGA 481 ATCGAAAAAA ACTGGTTTAA GCTGAG Predicted gene structure (within gDNA segment 82607 to 87684): Exon 1 83217 83351 ( 135 n); cDNA 1 135 ( 135 n); score: 0.889 Intron 1 83352 83809 ( 458 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.84) Exon 2 83810 83934 ( 125 n); cDNA 136 260 ( 125 n); score: 0.880 Intron 2 83935 85744 (1810 n); Pd: 0.000 (s: 0.88), Pa: 0.965 (s: 0) Exon 3 85745 85756 ( 12 n); cDNA 261 271 ( 11 n); score: 0.833 MATCH C04HBa0127E11.1+ SGN-E578392- 0.885 272 0.538 C PGS_C04HBa0127E11.1+_SGN-E578392- (83217 83351,83810 83934,85745 85756) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT TTTTACGTTT TTGGCCTTAA 83276 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||| ||| |||||| TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT CTTTATCTTT TTGCCCTTAA 60 TATTTTTATA CAATCTCCAA ATTACCTACA TAACTCTAAT ATCTCTTTCT TTCATTTTTC 83336 |||||||||| |||| ||||| |||| | | |||| |||| |||||||||| | |||||||| TATTTTTATA CAATTTCCAA GTTACACATA TAACCCTAAC ATCTCTTTCT TCCATTTTTC 120 CTTTTTCACG TGTGGATGAT AGATAATTAC TATTACTAAT GAATAAAAAT AAAAAAAATC 83396 |||||||| | ||| GCTTTTCACG TTTGG..... .......... .......... .......... .......... 135 TTATCTTTCA AGTGATCTAT TCAAATTATA TATTATTAAA ATGTAAAATA AGTTGCACAT 83456 .......... .......... .......... .......... .......... .......... 135 CTAACTTAAA TAAAAATTTA TATTCTTCTT ATAAATAATT TGTGATAATA AAGAAATATG 83516 .......... .......... .......... .......... .......... .......... 135 TGAATGATAG ACAATTATTA TTACCTATGG ATGAAACTAA AATAAAATCT TAAATCGTTC 83576 .......... .......... .......... .......... .......... .......... 135 TTTGATCTTT TCAAATTATA TATCTTTAAA ATCTATAATA AGTTTATATT CCTCTTATAA 83636 .......... .......... .......... .......... .......... .......... 135 ATAATTTGTG ATGAGAAAGA AATATGTGAA TGATAGCAAA ATATAATTAT TTATGGCTGT 83696 .......... .......... .......... .......... .......... .......... 135 AAAATATAAA TTAATTAACT TTTATTATGT TAACAACTTT TAAGAGTATT TCAGACATTT 83756 .......... .......... .......... .......... .......... .......... 135 TGATTTAAAA AGCAGTTTAT CAGCATTTAT TTGCCAAACA CATCAACAAT TTTTTTTTTA 83816 | | .......... .......... .......... .......... .......... ...CATAACA 142 ACTTCAGCAC TTTTATCCAA ACGCATAACT GCTTATTTTA AAAATAAGTT TCAGCAATTT 83876 |||||||||| |||||||||| | |||||||| | |||||||| ||||||||| |||||| ||| ACTTCAGCAC TTTTATCCAA ATGCATAACT GTTTATTTTA GAAATAAGTT TCAGCACTTT 202 CAAAAGTATT TTTTTAAAGC TGTTTTTATC AAGCCCATCC AAACGGGCAC TTATTATGGC 83936 |||||||| | |||||||||| ||||||||| |||||||||| |||||||| | | | || | CAAAAGTACT TTTTTAAAGC TGTTTTTATT AAGCCCATCC AAACGGGCCC TAAATAAG.. 260 CGTCTATACG ATGTAGGCGA CCACATTACG TGAATATCAT TATTCACAAT AATATCGTGT 83996 .......... .......... .......... .......... .......... .......... 260 TCAATGTAAT TCAATAAGAT TTAGAAATGA TTTTATGTAC ATAAATCTTA CTCTATACAA 84056 .......... .......... .......... .......... .......... .......... 260 TTTCCGCTCT ATCGAATGCC AATAGTATGG TCTAAATATC TAAATAATCG TCGCTTTGGT 84116 .......... .......... .......... .......... .......... .......... 260 AATTCACAAT AAATAGAAAT AATTTAGTAA ATTATTTTAT ATTTATTTAT TTTGACTGAT 84176 .......... .......... .......... .......... .......... .......... 260 TTTAAAATTA ACCCTAAAAT TTCATAAGCA ATCTTAAGCG TACCTCCTAA GATTTTAGAA 84236 .......... .......... .......... .......... .......... .......... 260 CGTAGAAAAA CAACAATTTT CAAAAGCTAA TCCCAAATTC CAAAAATTTT CCGATCGGAG 84296 .......... .......... .......... .......... .......... .......... 260 ATTTTTTTTT CCGATCAGAA ACAGAAAATA AAAATGGCAG TGAATCCTCA ATTATTTCCT 84356 .......... .......... .......... .......... .......... .......... 260 AATGGAATGC CAATTCCTTT CCTCAATGAA TTGTTCGTCC TATCTAGACA TGGTGTTGAG 84416 .......... .......... .......... .......... .......... .......... 260 TTTGAGGTTG ACAAAATCCC TGGGTGAGTT CATCTTATTT AGCGAATTCA GAATTTTCAT 84476 .......... .......... .......... .......... .......... .......... 260 TTAGGGATTC GTAAAAAAAA ATGCTTAATT TTTGAACTTG AAACCTCGAT ATGAAATTTG 84536 .......... .......... .......... .......... .......... .......... 260 AGCCCCTCAA TATTCAAAAT TTATTGTAAT ATGTAAGAAT TATCTTATCT ATATGGTGTA 84596 .......... .......... .......... .......... .......... .......... 260 ATTTGTGAAT CCTCTCTATT CGTGTATATG AAGAAAAAAA AAACTCTGAA AGTATTTATG 84656 .......... .......... .......... .......... .......... .......... 260 TATAATTTTA TGCAAATATT ATGAGAAGTG GAGGTGACAG CAGGGGCGGA GCTAATTAGG 84716 .......... .......... .......... .......... .......... .......... 260 TTCCTTTTGA TAGAAAATTA TACTGTTTAT ATATGGTTAA AATTATTTTT TGTGCCCATA 84776 .......... .......... .......... .......... .......... .......... 260 TCTCTATGTA TATATATATA TTAGATGTTG AACCCCTCAA TGAAAATATT GGCTTCGATG 84836 .......... .......... .......... .......... .......... .......... 260 AGGTTAGTTG GAGGATGAGG ACGATAAAAT CGATGTGAAG TGTCAAATAT GGTTAAATGT 84896 .......... .......... .......... .......... .......... .......... 260 ATTTGCTTTA CTTTTTTGAG TTCCTTGTTT TTCAAACACA TGATTCTTGC ATTGCCTTCA 84956 .......... .......... .......... .......... .......... .......... 260 TTGTTTTTTA TTAGTTCATG AAGCTGTGTT AATGAGACTG TTTGTTATCA GTGTAGGAAA 85016 .......... .......... .......... .......... .......... .......... 260 AACAAGAACA AGAGGTACAA TCTACTTGTC GAATATTCGG ATGGTCTTTG TTGCAAAGAT 85076 .......... .......... .......... .......... .......... .......... 260 GCCTGTGGAT TTCATTGCTT TTGATATGCC TTTGGTATGT TATACTTCTA TGTCTTTTTA 85136 .......... .......... .......... .......... .......... .......... 260 CCGTCCTCCG ATTTTGCAAA CACCACATGC TAACCAACTC TATTCACTCA TGACTGGTAT 85196 .......... .......... .......... .......... .......... .......... 260 AGTTTTTCTG TGGATCAGAG AAGAAAATCG CGAAAACTCT CTTTTGTTAC TCTTACTATT 85256 .......... .......... .......... .......... .......... .......... 260 ATATTAACAA GTTACTATGG CGCTCCTTCA GTATCTGCTG TAACTAGACC AACATATGCA 85316 .......... .......... .......... .......... .......... .......... 260 TAATGTGCAA TTCAGAATGG CGATTCCAAG TATAACGATT AGCGATATTT CTTTTGTTGC 85376 .......... .......... .......... .......... .......... .......... 260 TTCTTTTTGA GGCTGAACAA AACTTTGTGT ATGATATGCT TCTGAATCCT GTAGTTTTGT 85436 .......... .......... .......... .......... .......... .......... 260 TCTCTCTTTG AAATACATTT TAGAAAGTCG TATTTTACTA TGTGCAATTC AGAATGGCGC 85496 .......... .......... .......... .......... .......... .......... 260 GTAGTAGAGC AGATATATCA CTTTGGTCAA ATACGATCCT TCTCCTATGA AACTGTACTG 85556 .......... .......... .......... .......... .......... .......... 260 TTTGTTTCTA AAGCTTTGAC ATGTTAATTG AATGGTATTA TGACATGATT TATATCTGAT 85616 .......... .......... .......... .......... .......... .......... 260 TTGTATATTA AGCACAACAT TGCTAGATAC AACATCTGCT AGGAAGCATG TTATGGCATA 85676 .......... .......... .......... .......... .......... .......... 260 TATTGTTCGG ATATTTGTTA AGATGCATGA CATGAATTCG TGTTCATCTG TTCTATGTTT 85736 .......... .......... .......... .......... .......... .......... 260 TTGTTCAGAG AAATAATCTG 85756 | ||||| |||| ........A- AAATATTCTG 271 hqPGS_C04HBa0127E11.1+_SGN-E578392- (83217 83351,83810 83934) ******************************************************************************** EST sequence 57 -strand 528 n (File: SGN-E242674-) 1 GGTATTTAAG TGGAGATACG TAAAAAGACA AAATTATTAT CTCTGTGTTA CATAGTTGCA 61 AGTTGCAACT ATTTCTAACA ATCGACTCTA GATGATTTTT TTCGATTAAA ATAATAAAAA 121 AAGAAATTTA TATGAATAGT TATTTTTTTA ACCAAAGTGC ATAAATTGGA AACTCATAAA 181 TTTGTGACTT AGGTTACATG GTTGAGAACT GCCTCAAACT TATAATGTCT ACTATTTAAG 241 TGGAGATACG TAAAAGAAAA AATTATTGTC TAAGAGCTTG TTTAGTTCAG CTTAAAAGCT 301 GATCAAACTG ACTTAAAAAC TGATTTTTGA CTTATTTAGT TGTTTGGCAA TACTCAAAAT 361 AACTTATTTT AAGTTAAAAA AAAAAACTTA TTTTAAGCCA AAAGTTAAAA GCTGGGGTAG 421 GGGTGCTTTT TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CACATTTTTA TCTTTTTGCC 481 CTTAATATTT TTATACAATC TCCAAATTAT CCACATAACT CTAACATC Predicted gene structure (within gDNA segment 79464 to 84090): Exon 1 80108 80142 ( 35 n); cDNA 178 212 ( 35 n); score: 0.671 Intron 1 80143 80866 ( 724 n); Pd: 0.000 (s: 0), Pa: 0.038 (s: 0.60) Exon 2 80867 80911 ( 45 n); cDNA 213 254 ( 42 n); score: 0.600 Intron 2 80912 83046 (2135 n); Pd: 0.000 (s: 0.60), Pa: 0.268 (s: 0.70) Exon 3 83047 83319 ( 273 n); cDNA 255 528 ( 274 n); score: 0.844 MATCH C04HBa0127E11.1+ SGN-E242674- 0.844 353 0.669 C PGS_C04HBa0127E11.1+_SGN-E242674- (80108 80142,80867 80911,83047 83319) Alignment (genomic DNA sequence = upper lines): AAATTTGTTG C-TAGGTTCT AGTGAGTGAG AAATGAACTA GGGGCTTGTT CAATTTCATG 80166 |||||||| | |||||| | || |||| || || AAATTTGTGA CTTAGGTTAC A-TGGTTGAG AACTGC.... .......... .......... 212 AATTATTGCT AGGATTAGGT TTGTTTGCTA TATCTCATTT GTCAAGAGTT TACGTTCACC 80226 .......... .......... .......... .......... .......... .......... 212 GAGTTTTGGT GTTGTAAGCT GTGGGACGAT AACACGAAAC ACAAGCATCA GGGGAAGTTG 80286 .......... .......... .......... .......... .......... .......... 212 TTGCTTGTGA TGATGAATTT GGTGGGGTTT GTTCTGTTGT TTGCAGACCT CACAATAAGC 80346 .......... .......... .......... .......... .......... .......... 212 TGCTTTGATC ACATTGTAAC AAGATATAAT AGGGGATCAG TGTGGACTAT GAAAACCTGT 80406 .......... .......... .......... .......... .......... .......... 212 AGTTCCACAT GAATGTTTTG TAAGGAAACC ATGGCGGTTT CCGTTGAATT CAATTCTGTA 80466 .......... .......... .......... .......... .......... .......... 212 ATTTGTTGAA ACTATATCAG TTGTGAGCTT AAACTTTCCT ACTCAAAAGA TTGCTATGGA 80526 .......... .......... .......... .......... .......... .......... 212 CTTCAATTTA TTACTCAACT TACATTGTGT TATCTTGAAT GGGTGCTATA ATTAGATGTT 80586 .......... .......... .......... .......... .......... .......... 212 TTCGACATCT CAATGATTGA GTTGACACCA TACTGTATAA AATGAAATGG TTCATTTATT 80646 .......... .......... .......... .......... .......... .......... 212 GCATTACTGG TTACACGTGT CGACTGATCA ACTAATGCAT GGGACAGTGT GAAGTTGAAA 80706 .......... .......... .......... .......... .......... .......... 212 CATGAAATGC TGTGGAGGCG AACGTATAAG GAGGATAGAA CTCTAAATTT CTATACTCAA 80766 .......... .......... .......... .......... .......... .......... 212 GCTTTCTTAG ATTGGTTATG GACCAGATAA TCTTGCTACA GCTTGATGTT TATTCTATGT 80826 .......... .......... .......... .......... .......... .......... 212 ATAAATGTGC GATGTGTGCC ATAGATTCGA AATGGAACAG CTCAAAGTTT CAACAGAAAG 80886 |||||| || || | .......... .......... .......... .......... CTCAAACTTA TAA-TGT-CT 230 AGTATTTGAT GATTATTTAC GTTAATGATC TTCATGCTAT ATAAGTTCCT CAGTACCACT 80946 | ||||| | | | ||| || || ACTATTT-AA GTGGAGATAC GTAAA..... .......... .......... .......... 254 CAGAAGATTA AACTGTAGTT GTTAAAAATG TTATAGTATA TCATACATTT ATGGATGACA 81006 .......... .......... .......... .......... .......... .......... 254 TGATGCCGTA TTCTATCATG TGCTGCTTCA ACATGGAGGA GGAAGGAGTT ACACTGCAGC 81066 .......... .......... .......... .......... .......... .......... 254 ATCTGGGAGG ATTCTGCTCT GCAGCATCTG AGATTAACGA CACCTATCAG CTTTAATTTT 81126 .......... .......... .......... .......... .......... .......... 254 GCATCAGATT AGGTAAGATG TGGTTATATT CGCTTTACTT GTGATTCTTT TTGAATCTTA 81186 .......... .......... .......... .......... .......... .......... 254 TTAGTTTAGA AGATAAAGCA TATAGATACC CTGTCAGTTA TCTGGCCTTA GAAAGCGAGA 81246 .......... .......... .......... .......... .......... .......... 254 AAACCAATTT TGAGACATCT GATTAGTCTT ATTTCAAGCT GACAACGAGC TAGCCACACC 81306 .......... .......... .......... .......... .......... .......... 254 TTTCTAGCTA TCCCGTTGGG AAAACAAGAA GGTTTATATA TGTCTTGAAG ATTTGCCCCA 81366 .......... .......... .......... .......... .......... .......... 254 ATAGTTCTAA TTTAAATTGG TTCTCTAATA TAGAGCAAGT GTTTCTTGCT TTGTTTACCT 81426 .......... .......... .......... .......... .......... .......... 254 GCATTTCTTT CTTGAGTTGC TGAAGTTTTA TTAGATTTAA ACTAAAGTCT CCTATGTTTT 81486 .......... .......... .......... .......... .......... .......... 254 ATTTACGAGC CGGAGCAATT ATGTTCTCCA TGATCGATTT CAACTCCACG AGCTGGTTGA 81546 .......... .......... .......... .......... .......... .......... 254 TTTTCTTTCT GCATTAATTT CATCTCAAGT AACCATCCAG AGTAGCAAAT GGTGCAAGAA 81606 .......... .......... .......... .......... .......... .......... 254 TACAAACTTT GTTGGATCTG AAGTCTGAAA GCTTCGGTTG ATTTTCTATT TGCTTCCCAC 81666 .......... .......... .......... .......... .......... .......... 254 TTTACGAGAC TATTGATGTA CACTGGAAGG TAATGTTATT GTTTTCAGCA TGCCTATTTA 81726 .......... .......... .......... .......... .......... .......... 254 TCATATTAGT CGTCTTCTCT CGTGTCAAAT CTTGCTGTAT CTGTTTCTGT TCACATTCAT 81786 .......... .......... .......... .......... .......... .......... 254 CTGTTTCAAT CAGAGGAATC TGAATAGAGA ATAAACATGC CATTTCCGCA TTATTAGATA 81846 .......... .......... .......... .......... .......... .......... 254 GATAGTTTGT CTGATATTGG GTAGCATCCA CTCAATGAAC CTGCTTGTTT AATGATCTCA 81906 .......... .......... .......... .......... .......... .......... 254 TTGGATTTTG GGATAAGTCG AGTTTAAGAT GCGAACCATG GGTACCAAGT ACTTGGAAGC 81966 .......... .......... .......... .......... .......... .......... 254 TTTCTATGTA CTCCATGCGT TACTCTTGCC TCTATTGCTC AAATTCTTCA AAAATGTTGG 82026 .......... .......... .......... .......... .......... .......... 254 TGGGTGCGTG TTAGACTCTT GCTAATATGG TGTTTCATAA CGACTATCAC ATTTGGAATT 82086 .......... .......... .......... .......... .......... .......... 254 TCAGTTTAGT TCAAATTCAG CGTTCTCTTT TCCAGGAGAA TAAGATTGTA TCTACAATCA 82146 .......... .......... .......... .......... .......... .......... 254 GTATCGATCA TAGTTGAACC TTGGTCGCCT TGATTATGTC TATTTGTCTC GTAAATAATT 82206 .......... .......... .......... .......... .......... .......... 254 GCATATTTGA AAGAGGGATT TTCAGGGAAC AACATAAAGC ATGCTCAAGA ACTAACAACT 82266 .......... .......... .......... .......... .......... .......... 254 TTTTGAAACT AGTTGTTTTT TGAGAAACAA TGGAGATTTT ACTTCTCATT TCTCTGTGTG 82326 .......... .......... .......... .......... .......... .......... 254 AAGACTGCCT TTTTGTGTCT TACCAACTTT CTGTATTATT TCAATCACTT GAATGCTTAC 82386 .......... .......... .......... .......... .......... .......... 254 TCGTTATTCA TTTCTCCTCA GAACGGAAGT CTTGGAGCAA TAGTAAACTT ATCTCCGTGT 82446 .......... .......... .......... .......... .......... .......... 254 AAGTTCCAAG TCATTGTTTG AGCTGCAGCG GAACCAACCA CTGAATGCTT GCTTCAGGTG 82506 .......... .......... .......... .......... .......... .......... 254 CGGCCCTTCC ACGTACCCTG CATGCAACGG CTTCCTTTCT AATTCAATTC TGTCTCAGTA 82566 .......... .......... .......... .......... .......... .......... 254 CAAATAGTTC ATTGGTTTCT TATAACATAA TTTTTCCTCA GCCACATAAG AGGAATTATA 82626 .......... .......... .......... .......... .......... .......... 254 TATATTCCTT TATTAGGGAT AATTACGATC CCTAAACACT TCGATAAACT AGTTTATTTA 82686 .......... .......... .......... .......... .......... .......... 254 TAAAATACAA ACAATGTATA AGTCGTGTAT ACTTTACTAA ACATCATATA CTAATACACA 82746 .......... .......... .......... .......... .......... .......... 254 ACATATATAC TTAATAGTGT GTATGTTACA TTTATTTTTT AGTAAACTAG TCGGCTGAAC 82806 .......... .......... .......... .......... .......... .......... 254 GGTATATATC TATAACTTTC TTAATTTTTT TAGAAATAAA CTTCGAACTT TATAGATTCA 82866 .......... .......... .......... .......... .......... .......... 254 CAATAGTGTA AACTTTATAG GTTCACTTGA TTGATTGGTA TCTATATGTT TCTTCTACAT 82926 .......... .......... .......... .......... .......... .......... 254 GACTTCAAGT TACGTCTCCT TTGTTATAAT TGTAATTATA TTTGATTCTA TAACATCAGT 82986 .......... .......... .......... .......... .......... .......... 254 TTTGTGTTCT TTTTTCTTTT AAAAAATGCT TTTAAGTTAG CTAAAAGCTT GGCCAAACAG 83046 .......... .......... .......... .......... .......... .......... 254 GCAATAGACA AGTGT-TAAG AGCCTGTTTG GCTCAGCTTA AAAACTGGTC AAACTGACTT 83105 || | | | ||| |||| ||| ||||| | |||||||| ||| ||| || |||||||||| AGAAAAAATT ATTGTCTAAG AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT 314 AAAAACTGGT TTTTGACTTA TTTAGCTGTT TGGCAATACT CAAAATAACT TATTTTAAGT 83165 |||||||| | |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AAAAACTGAT TTTTGACTTA TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT 374 T---TAAAAA AACTTATTTT AGGTCAAAAG TTAAAAGCT- GGGTAGAGAT GCTTTTTTTT 83221 | ||||| |||||||||| | | |||||| ||||||||| |||||| | | || |||| TAAAAAAAAA AACTTATTTT AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT GC----TTTT 430 TTTTTAGCTT ATAAGCTGTT TTAAGTTGAT CACATTTTTA CGTTTTTGGC CTTAATATTT 83281 |||||||||| |||||||||| ||||||||| |||||||||| |||||| | |||||||||| TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CACATTTTTA TCTTTTTGCC CTTAATATTT 490 TTATACAATC TCCAAATTAC CTACATAACT CTAATATC 83319 |||||||||| ||||||||| | |||||||| |||| ||| TTATACAATC TCCAAATTAT CCACATAACT CTAACATC 528 hqPGS_C04HBa0127E11.1+_SGN-E242674- (83047 83319) ******************************************************************************** EST sequence 77 -strand 643 n (File: SGN-E233074-) 1 TAGGTGTTAG TTGATAAATA TTAAGCGTTA AATTCGATTT TTTATATATA AGTTTTCTAG 61 TGCTTAAATA TAATTGGGAA GGTCAAGGGG TTTGTGACTT AAGTTAGTGA TGTCTGGTAT 121 TTAAGTGGAG ATACGTAAAA AGACAAAATT ATTATCTCTG TGTTACATAG TTGCAAGTTG 181 CAACTATTTC TAACAATCGA CTCTAGATGA TTTTTTTCGA TTAAAATAAT AAAAAAAGAA 241 ATTTATATGA ATAGTTATTT TTTTAACCAA AGTGCATAAA TTGGAAACTC ATAAATTTGT 301 GACTTAGGTT ACATGGTTGA GAACTGCCTC AAACTTATAA TGTCTACTAT TTAAGTGGAG 361 ATACGTAAAA GAAAAAATTA TTGTCTAAGA GCTTGTTTAG TTCAGCTTAA AAGCTGATCA 421 AACTGACTTA AAAACTGATT TTTGACTTAT TTAGTTGTTT GGCAATACTC AAAATAACTT 481 ATTTTAAGTT AAAAAAAAAA ACTTATTTTA AGCCAAAAGT TAAAAGCTGG GGTAGGGGTG 541 CTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGACCACAT TTTTATCTTT TTGCCCTTAA 601 TATTTTTATA CAATCTCCAA ATTATCCACA TAACTCTAAC ATC Predicted gene structure (within gDNA segment 78314 to 84090): Exon 1 79201 79223 ( 23 n); cDNA 325 347 ( 23 n); score: 0.696 Intron 1 79224 80693 (1470 n); Pd: 0.000 (s: 0), Pa: 0.903 (s: 0) Exon 2 80694 80714 ( 21 n); cDNA 348 369 ( 22 n); score: 0.500 Intron 2 80715 83046 (2332 n); Pd: 0.000 (s: 0), Pa: 0.268 (s: 0.70) Exon 3 83047 83319 ( 273 n); cDNA 370 643 ( 274 n); score: 0.844 MATCH C04HBa0127E11.1+ SGN-E233074- 0.844 317 0.493 C PGS_C04HBa0127E11.1+_SGN-E233074- (79201 79223,80694 80714,83047 83319) Alignment (genomic DNA sequence = upper lines): TGTTTTGAGC TTCTAATGTC GACGTCTGCA GAGGGAAATG GAGCTATAAT TGATCCTCAG 79260 || | | | || ||||||| || TGCCTCAAAC TTATAATGTC TAC....... .......... .......... .......... 347 AGGCAACAAC AACAGGCGCC TACTGGGGTT GGTACAAATG GTGCTTTAAC AGTGAAAAAA 79320 .......... .......... .......... .......... .......... .......... 347 CCGCCGGTAA AAGACCGGCA TAGTAAGGTT GATGGTAGAG GAAGACGTAT AAGGATGCCA 79380 .......... .......... .......... .......... .......... .......... 347 ATTGTATGTG CGGCAAGAGT TTTTCAGCTT ACTCGTGAAT TGGGTCATAA ATCCGATGGA 79440 .......... .......... .......... .......... .......... .......... 347 CAAACTATTG AATGGCTGCT TCGTCAAGCT GAGCCTTCAA TTATAGCTGC TACTGGTACT 79500 .......... .......... .......... .......... .......... .......... 347 GGTACTATTC CTGCTAGTTT CTCGACTGTA TCTGTATCGG TACGGAACTC AACTGCATCT 79560 .......... .......... .......... .......... .......... .......... 347 CTTGTTTCAT CACTCTCCGC TCCACTTGAT CAGAAATCAT CACAAATGAT TTCACCGGCG 79620 .......... .......... .......... .......... .......... .......... 347 CCGTTTATCC TCGGGAAACG TCTCCGGTCA GATGACGAAA ACATTGAAAA TGGGAATAAG 79680 .......... .......... .......... .......... .......... .......... 347 GATGATGTAG CTGTGGCTGC CGGAGCTGCT ACTGCTGTGG GTCCCACAGC TGGGTTTTGG 79740 .......... .......... .......... .......... .......... .......... 347 GCTGTTCCAG CTAGGCCTGA TTTTGGTCAA ATTTGGAGCT TTGCGGCGGC ACCGCCACCT 79800 .......... .......... .......... .......... .......... .......... 347 GAAATGATGG TGCCAACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG 79860 .......... .......... .......... .......... .......... .......... 347 CAGAGTTCTA GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT 79920 .......... .......... .......... .......... .......... .......... 347 TACTTACCAA TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCAGG TCCTCCACAG 79980 .......... .......... .......... .......... .......... .......... 347 CCCTCTTCCG GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT 80040 .......... .......... .......... .......... .......... .......... 347 TGTTATCGTT ATTGTTGTTA ATATATCGTA TAAATGTGTT TTAATGTTCT TGTTTGTGTT 80100 .......... .......... .......... .......... .......... .......... 347 AGATGAGAAA TTTGTTGCTA GGTTCTAGTG AGTGAGAAAT GAACTAGGGG CTTGTTCAAT 80160 .......... .......... .......... .......... .......... .......... 347 TTCATGAATT ATTGCTAGGA TTAGGTTTGT TTGCTATATC TCATTTGTCA AGAGTTTACG 80220 .......... .......... .......... .......... .......... .......... 347 TTCACCGAGT TTTGGTGTTG TAAGCTGTGG GACGATAACA CGAAACACAA GCATCAGGGG 80280 .......... .......... .......... .......... .......... .......... 347 AAGTTGTTGC TTGTGATGAT GAATTTGGTG GGGTTTGTTC TGTTGTTTGC AGACCTCACA 80340 .......... .......... .......... .......... .......... .......... 347 ATAAGCTGCT TTGATCACAT TGTAACAAGA TATAATAGGG GATCAGTGTG GACTATGAAA 80400 .......... .......... .......... .......... .......... .......... 347 ACCTGTAGTT CCACATGAAT GTTTTGTAAG GAAACCATGG CGGTTTCCGT TGAATTCAAT 80460 .......... .......... .......... .......... .......... .......... 347 TCTGTAATTT GTTGAAACTA TATCAGTTGT GAGCTTAAAC TTTCCTACTC AAAAGATTGC 80520 .......... .......... .......... .......... .......... .......... 347 TATGGACTTC AATTTATTAC TCAACTTACA TTGTGTTATC TTGAATGGGT GCTATAATTA 80580 .......... .......... .......... .......... .......... .......... 347 GATGTTTTCG ACATCTCAAT GATTGAGTTG ACACCATACT GTATAAAATG AAATGGTTCA 80640 .......... .......... .......... .......... .......... .......... 347 TTTATTGCAT TACTGGTTAC ACGTGTCGAC TGATCAACTA ATGCATGGGA CAGTG-TGAA 80699 | | || .......... .......... .......... .......... .......... ...TATTTAA 354 GTTGAAACAT GAAATGCTGT GGAGGCGAAC GTATAAGGAG GATAGAACTC TAAATTTCTA 80759 || || | | | || GTGGAGATAC GTAAA..... .......... .......... .......... .......... 369 TACTCAAGCT TTCTTAGATT GGTTATGGAC CAGATAATCT TGCTACAGCT TGATGTTTAT 80819 .......... .......... .......... .......... .......... .......... 369 TCTATGTATA AATGTGCGAT GTGTGCCATA GATTCGAAAT GGAACAGCTC AAAGTTTCAA 80879 .......... .......... .......... .......... .......... .......... 369 CAGAAAGAGT ATTTGATGAT TATTTACGTT AATGATCTTC ATGCTATATA AGTTCCTCAG 80939 .......... .......... .......... .......... .......... .......... 369 TACCACTCAG AAGATTAAAC TGTAGTTGTT AAAAATGTTA TAGTATATCA TACATTTATG 80999 .......... .......... .......... .......... .......... .......... 369 GATGACATGA TGCCGTATTC TATCATGTGC TGCTTCAACA TGGAGGAGGA AGGAGTTACA 81059 .......... .......... .......... .......... .......... .......... 369 CTGCAGCATC TGGGAGGATT CTGCTCTGCA GCATCTGAGA TTAACGACAC CTATCAGCTT 81119 .......... .......... .......... .......... .......... .......... 369 TAATTTTGCA TCAGATTAGG TAAGATGTGG TTATATTCGC TTTACTTGTG ATTCTTTTTG 81179 .......... .......... .......... .......... .......... .......... 369 AATCTTATTA GTTTAGAAGA TAAAGCATAT AGATACCCTG TCAGTTATCT GGCCTTAGAA 81239 .......... .......... .......... .......... .......... .......... 369 AGCGAGAAAA CCAATTTTGA GACATCTGAT TAGTCTTATT TCAAGCTGAC AACGAGCTAG 81299 .......... .......... .......... .......... .......... .......... 369 CCACACCTTT CTAGCTATCC CGTTGGGAAA ACAAGAAGGT TTATATATGT CTTGAAGATT 81359 .......... .......... .......... .......... .......... .......... 369 TGCCCCAATA GTTCTAATTT AAATTGGTTC TCTAATATAG AGCAAGTGTT TCTTGCTTTG 81419 .......... .......... .......... .......... .......... .......... 369 TTTACCTGCA TTTCTTTCTT GAGTTGCTGA AGTTTTATTA GATTTAAACT AAAGTCTCCT 81479 .......... .......... .......... .......... .......... .......... 369 ATGTTTTATT TACGAGCCGG AGCAATTATG TTCTCCATGA TCGATTTCAA CTCCACGAGC 81539 .......... .......... .......... .......... .......... .......... 369 TGGTTGATTT TCTTTCTGCA TTAATTTCAT CTCAAGTAAC CATCCAGAGT AGCAAATGGT 81599 .......... .......... .......... .......... .......... .......... 369 GCAAGAATAC AAACTTTGTT GGATCTGAAG TCTGAAAGCT TCGGTTGATT TTCTATTTGC 81659 .......... .......... .......... .......... .......... .......... 369 TTCCCACTTT ACGAGACTAT TGATGTACAC TGGAAGGTAA TGTTATTGTT TTCAGCATGC 81719 .......... .......... .......... .......... .......... .......... 369 CTATTTATCA TATTAGTCGT CTTCTCTCGT GTCAAATCTT GCTGTATCTG TTTCTGTTCA 81779 .......... .......... .......... .......... .......... .......... 369 CATTCATCTG TTTCAATCAG AGGAATCTGA ATAGAGAATA AACATGCCAT TTCCGCATTA 81839 .......... .......... .......... .......... .......... .......... 369 TTAGATAGAT AGTTTGTCTG ATATTGGGTA GCATCCACTC AATGAACCTG CTTGTTTAAT 81899 .......... .......... .......... .......... .......... .......... 369 GATCTCATTG GATTTTGGGA TAAGTCGAGT TTAAGATGCG AACCATGGGT ACCAAGTACT 81959 .......... .......... .......... .......... .......... .......... 369 TGGAAGCTTT CTATGTACTC CATGCGTTAC TCTTGCCTCT ATTGCTCAAA TTCTTCAAAA 82019 .......... .......... .......... .......... .......... .......... 369 ATGTTGGTGG GTGCGTGTTA GACTCTTGCT AATATGGTGT TTCATAACGA CTATCACATT 82079 .......... .......... .......... .......... .......... .......... 369 TGGAATTTCA GTTTAGTTCA AATTCAGCGT TCTCTTTTCC AGGAGAATAA GATTGTATCT 82139 .......... .......... .......... .......... .......... .......... 369 ACAATCAGTA TCGATCATAG TTGAACCTTG GTCGCCTTGA TTATGTCTAT TTGTCTCGTA 82199 .......... .......... .......... .......... .......... .......... 369 AATAATTGCA TATTTGAAAG AGGGATTTTC AGGGAACAAC ATAAAGCATG CTCAAGAACT 82259 .......... .......... .......... .......... .......... .......... 369 AACAACTTTT TGAAACTAGT TGTTTTTTGA GAAACAATGG AGATTTTACT TCTCATTTCT 82319 .......... .......... .......... .......... .......... .......... 369 CTGTGTGAAG ACTGCCTTTT TGTGTCTTAC CAACTTTCTG TATTATTTCA ATCACTTGAA 82379 .......... .......... .......... .......... .......... .......... 369 TGCTTACTCG TTATTCATTT CTCCTCAGAA CGGAAGTCTT GGAGCAATAG TAAACTTATC 82439 .......... .......... .......... .......... .......... .......... 369 TCCGTGTAAG TTCCAAGTCA TTGTTTGAGC TGCAGCGGAA CCAACCACTG AATGCTTGCT 82499 .......... .......... .......... .......... .......... .......... 369 TCAGGTGCGG CCCTTCCACG TACCCTGCAT GCAACGGCTT CCTTTCTAAT TCAATTCTGT 82559 .......... .......... .......... .......... .......... .......... 369 CTCAGTACAA ATAGTTCATT GGTTTCTTAT AACATAATTT TTCCTCAGCC ACATAAGAGG 82619 .......... .......... .......... .......... .......... .......... 369 AATTATATAT ATTCCTTTAT TAGGGATAAT TACGATCCCT AAACACTTCG ATAAACTAGT 82679 .......... .......... .......... .......... .......... .......... 369 TTATTTATAA AATACAAACA ATGTATAAGT CGTGTATACT TTACTAAACA TCATATACTA 82739 .......... .......... .......... .......... .......... .......... 369 ATACACAACA TATATACTTA ATAGTGTGTA TGTTACATTT ATTTTTTAGT AAACTAGTCG 82799 .......... .......... .......... .......... .......... .......... 369 GCTGAACGGT ATATATCTAT AACTTTCTTA ATTTTTTTAG AAATAAACTT CGAACTTTAT 82859 .......... .......... .......... .......... .......... .......... 369 AGATTCACAA TAGTGTAAAC TTTATAGGTT CACTTGATTG ATTGGTATCT ATATGTTTCT 82919 .......... .......... .......... .......... .......... .......... 369 TCTACATGAC TTCAAGTTAC GTCTCCTTTG TTATAATTGT AATTATATTT GATTCTATAA 82979 .......... .......... .......... .......... .......... .......... 369 CATCAGTTTT GTGTTCTTTT TTCTTTTAAA AAATGCTTTT AAGTTAGCTA AAAGCTTGGC 83039 .......... .......... .......... .......... .......... .......... 369 CAAACAGGCA ATAGACAAGT GT-TAAGAGC CTGTTTGGCT CAGCTTAAAA ACTGGTCAAA 83098 | | | | | | || ||||||| ||||| | | |||||||||| ||| ||||| .......AGA AAAAATTATT GTCTAAGAGC TTGTTTAGTT CAGCTTAAAA GCTGATCAAA 422 CTGACTTAAA AACTGGTTTT TGACTTATTT AGCTGTTTGG CAATACTCAA AATAACTTAT 83158 |||||||||| ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| CTGACTTAAA AACTGATTTT TGACTTATTT AGTTGTTTGG CAATACTCAA AATAACTTAT 482 TTTAAGTT-- -TAAAAAAAC TTATTTTAGG TCAAAAGTTA AAAGCT-GGG TAGAGATGCT 83214 |||||||| |||||||| |||||||| | ||||||||| |||||| ||| ||| | ||| TTTAAGTTAA AAAAAAAAAC TTATTTTAAG CCAAAAGTTA AAAGCTGGGG TAGGGGTGC- 541 TTTTTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGATCAC ATTTTTACGT TTTTGGCCTT 83274 ||||||| |||||||||| |||||||||| |||||| ||| ||||||| | ||||| |||| ---TTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGACCAC ATTTTTATCT TTTTGCCCTT 598 AATATTTTTA TACAATCTCC AAATTACCTA CATAACTCTA ATATC 83319 |||||||||| |||||||||| |||||| | | |||||||||| | ||| AATATTTTTA TACAATCTCC AAATTATCCA CATAACTCTA ACATC 643 hqPGS_C04HBa0127E11.1+_SGN-E233074- (83047 83319) ******************************************************************************** EST sequence 108 -strand 514 n (File: SGN-E233735-) 1 GATACGTAAA AAGACAAAAT TATTATCTCT GTGTTACATA GTTGCAAGTT GCAACTATTT 61 CTAACAATCG ACTCTAGATG ATTTTTTTCG ATTAAAATAA TAAAAAAAGA AATTTATATG 121 AATAGTTATT TTTTTAACCA AAGTGCATAA ATTGGAAACT CATAAATTTG TGACTTAGGT 181 TACATGGTTG AGAACTGCCT CAAACTTATA ATGTCTACTA TTTAAGTGGA GATACGTAAA 241 AGAAAAAATT ATTGTCTAAG AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT 301 AAAAACTGAT TTTTGACTTA TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT 361 TAAAAAAAAA AACTTATTTT AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT GCTTTTTTTT 421 TAGCTTATAA GCTGTTTTAA GTTGACCACA TTTTTATCTT TTTGCCCTTA ATATTTTTAT 481 ACAATCTCCA AATTATCCAC ATAACTCTAA CATC Predicted gene structure (within gDNA segment 78404 to 84090): Exon 1 79201 79223 ( 23 n); cDNA 196 218 ( 23 n); score: 0.696 Intron 1 79224 80693 (1470 n); Pd: 0.000 (s: 0), Pa: 0.903 (s: 0) Exon 2 80694 80714 ( 21 n); cDNA 219 240 ( 22 n); score: 0.500 Intron 2 80715 83046 (2332 n); Pd: 0.000 (s: 0), Pa: 0.268 (s: 0.70) Exon 3 83047 83319 ( 273 n); cDNA 241 514 ( 274 n); score: 0.844 MATCH C04HBa0127E11.1+ SGN-E233735- 0.844 317 0.617 C PGS_C04HBa0127E11.1+_SGN-E233735- (79201 79223,80694 80714,83047 83319) Alignment (genomic DNA sequence = upper lines): TGTTTTGAGC TTCTAATGTC GACGTCTGCA GAGGGAAATG GAGCTATAAT TGATCCTCAG 79260 || | | | || ||||||| || TGCCTCAAAC TTATAATGTC TAC....... .......... .......... .......... 218 AGGCAACAAC AACAGGCGCC TACTGGGGTT GGTACAAATG GTGCTTTAAC AGTGAAAAAA 79320 .......... .......... .......... .......... .......... .......... 218 CCGCCGGTAA AAGACCGGCA TAGTAAGGTT GATGGTAGAG GAAGACGTAT AAGGATGCCA 79380 .......... .......... .......... .......... .......... .......... 218 ATTGTATGTG CGGCAAGAGT TTTTCAGCTT ACTCGTGAAT TGGGTCATAA ATCCGATGGA 79440 .......... .......... .......... .......... .......... .......... 218 CAAACTATTG AATGGCTGCT TCGTCAAGCT GAGCCTTCAA TTATAGCTGC TACTGGTACT 79500 .......... .......... .......... .......... .......... .......... 218 GGTACTATTC CTGCTAGTTT CTCGACTGTA TCTGTATCGG TACGGAACTC AACTGCATCT 79560 .......... .......... .......... .......... .......... .......... 218 CTTGTTTCAT CACTCTCCGC TCCACTTGAT CAGAAATCAT CACAAATGAT TTCACCGGCG 79620 .......... .......... .......... .......... .......... .......... 218 CCGTTTATCC TCGGGAAACG TCTCCGGTCA GATGACGAAA ACATTGAAAA TGGGAATAAG 79680 .......... .......... .......... .......... .......... .......... 218 GATGATGTAG CTGTGGCTGC CGGAGCTGCT ACTGCTGTGG GTCCCACAGC TGGGTTTTGG 79740 .......... .......... .......... .......... .......... .......... 218 GCTGTTCCAG CTAGGCCTGA TTTTGGTCAA ATTTGGAGCT TTGCGGCGGC ACCGCCACCT 79800 .......... .......... .......... .......... .......... .......... 218 GAAATGATGG TGCCAACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG 79860 .......... .......... .......... .......... .......... .......... 218 CAGAGTTCTA GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT 79920 .......... .......... .......... .......... .......... .......... 218 TACTTACCAA TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCAGG TCCTCCACAG 79980 .......... .......... .......... .......... .......... .......... 218 CCCTCTTCCG GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT 80040 .......... .......... .......... .......... .......... .......... 218 TGTTATCGTT ATTGTTGTTA ATATATCGTA TAAATGTGTT TTAATGTTCT TGTTTGTGTT 80100 .......... .......... .......... .......... .......... .......... 218 AGATGAGAAA TTTGTTGCTA GGTTCTAGTG AGTGAGAAAT GAACTAGGGG CTTGTTCAAT 80160 .......... .......... .......... .......... .......... .......... 218 TTCATGAATT ATTGCTAGGA TTAGGTTTGT TTGCTATATC TCATTTGTCA AGAGTTTACG 80220 .......... .......... .......... .......... .......... .......... 218 TTCACCGAGT TTTGGTGTTG TAAGCTGTGG GACGATAACA CGAAACACAA GCATCAGGGG 80280 .......... .......... .......... .......... .......... .......... 218 AAGTTGTTGC TTGTGATGAT GAATTTGGTG GGGTTTGTTC TGTTGTTTGC AGACCTCACA 80340 .......... .......... .......... .......... .......... .......... 218 ATAAGCTGCT TTGATCACAT TGTAACAAGA TATAATAGGG GATCAGTGTG GACTATGAAA 80400 .......... .......... .......... .......... .......... .......... 218 ACCTGTAGTT CCACATGAAT GTTTTGTAAG GAAACCATGG CGGTTTCCGT TGAATTCAAT 80460 .......... .......... .......... .......... .......... .......... 218 TCTGTAATTT GTTGAAACTA TATCAGTTGT GAGCTTAAAC TTTCCTACTC AAAAGATTGC 80520 .......... .......... .......... .......... .......... .......... 218 TATGGACTTC AATTTATTAC TCAACTTACA TTGTGTTATC TTGAATGGGT GCTATAATTA 80580 .......... .......... .......... .......... .......... .......... 218 GATGTTTTCG ACATCTCAAT GATTGAGTTG ACACCATACT GTATAAAATG AAATGGTTCA 80640 .......... .......... .......... .......... .......... .......... 218 TTTATTGCAT TACTGGTTAC ACGTGTCGAC TGATCAACTA ATGCATGGGA CAGT-GTGAA 80699 | | || .......... .......... .......... .......... .......... ...TATTTAA 225 GTTGAAACAT GAAATGCTGT GGAGGCGAAC GTATAAGGAG GATAGAACTC TAAATTTCTA 80759 || || | | | || GTGGAGATAC GTAAA..... .......... .......... .......... .......... 240 TACTCAAGCT TTCTTAGATT GGTTATGGAC CAGATAATCT TGCTACAGCT TGATGTTTAT 80819 .......... .......... .......... .......... .......... .......... 240 TCTATGTATA AATGTGCGAT GTGTGCCATA GATTCGAAAT GGAACAGCTC AAAGTTTCAA 80879 .......... .......... .......... .......... .......... .......... 240 CAGAAAGAGT ATTTGATGAT TATTTACGTT AATGATCTTC ATGCTATATA AGTTCCTCAG 80939 .......... .......... .......... .......... .......... .......... 240 TACCACTCAG AAGATTAAAC TGTAGTTGTT AAAAATGTTA TAGTATATCA TACATTTATG 80999 .......... .......... .......... .......... .......... .......... 240 GATGACATGA TGCCGTATTC TATCATGTGC TGCTTCAACA TGGAGGAGGA AGGAGTTACA 81059 .......... .......... .......... .......... .......... .......... 240 CTGCAGCATC TGGGAGGATT CTGCTCTGCA GCATCTGAGA TTAACGACAC CTATCAGCTT 81119 .......... .......... .......... .......... .......... .......... 240 TAATTTTGCA TCAGATTAGG TAAGATGTGG TTATATTCGC TTTACTTGTG ATTCTTTTTG 81179 .......... .......... .......... .......... .......... .......... 240 AATCTTATTA GTTTAGAAGA TAAAGCATAT AGATACCCTG TCAGTTATCT GGCCTTAGAA 81239 .......... .......... .......... .......... .......... .......... 240 AGCGAGAAAA CCAATTTTGA GACATCTGAT TAGTCTTATT TCAAGCTGAC AACGAGCTAG 81299 .......... .......... .......... .......... .......... .......... 240 CCACACCTTT CTAGCTATCC CGTTGGGAAA ACAAGAAGGT TTATATATGT CTTGAAGATT 81359 .......... .......... .......... .......... .......... .......... 240 TGCCCCAATA GTTCTAATTT AAATTGGTTC TCTAATATAG AGCAAGTGTT TCTTGCTTTG 81419 .......... .......... .......... .......... .......... .......... 240 TTTACCTGCA TTTCTTTCTT GAGTTGCTGA AGTTTTATTA GATTTAAACT AAAGTCTCCT 81479 .......... .......... .......... .......... .......... .......... 240 ATGTTTTATT TACGAGCCGG AGCAATTATG TTCTCCATGA TCGATTTCAA CTCCACGAGC 81539 .......... .......... .......... .......... .......... .......... 240 TGGTTGATTT TCTTTCTGCA TTAATTTCAT CTCAAGTAAC CATCCAGAGT AGCAAATGGT 81599 .......... .......... .......... .......... .......... .......... 240 GCAAGAATAC AAACTTTGTT GGATCTGAAG TCTGAAAGCT TCGGTTGATT TTCTATTTGC 81659 .......... .......... .......... .......... .......... .......... 240 TTCCCACTTT ACGAGACTAT TGATGTACAC TGGAAGGTAA TGTTATTGTT TTCAGCATGC 81719 .......... .......... .......... .......... .......... .......... 240 CTATTTATCA TATTAGTCGT CTTCTCTCGT GTCAAATCTT GCTGTATCTG TTTCTGTTCA 81779 .......... .......... .......... .......... .......... .......... 240 CATTCATCTG TTTCAATCAG AGGAATCTGA ATAGAGAATA AACATGCCAT TTCCGCATTA 81839 .......... .......... .......... .......... .......... .......... 240 TTAGATAGAT AGTTTGTCTG ATATTGGGTA GCATCCACTC AATGAACCTG CTTGTTTAAT 81899 .......... .......... .......... .......... .......... .......... 240 GATCTCATTG GATTTTGGGA TAAGTCGAGT TTAAGATGCG AACCATGGGT ACCAAGTACT 81959 .......... .......... .......... .......... .......... .......... 240 TGGAAGCTTT CTATGTACTC CATGCGTTAC TCTTGCCTCT ATTGCTCAAA TTCTTCAAAA 82019 .......... .......... .......... .......... .......... .......... 240 ATGTTGGTGG GTGCGTGTTA GACTCTTGCT AATATGGTGT TTCATAACGA CTATCACATT 82079 .......... .......... .......... .......... .......... .......... 240 TGGAATTTCA GTTTAGTTCA AATTCAGCGT TCTCTTTTCC AGGAGAATAA GATTGTATCT 82139 .......... .......... .......... .......... .......... .......... 240 ACAATCAGTA TCGATCATAG TTGAACCTTG GTCGCCTTGA TTATGTCTAT TTGTCTCGTA 82199 .......... .......... .......... .......... .......... .......... 240 AATAATTGCA TATTTGAAAG AGGGATTTTC AGGGAACAAC ATAAAGCATG CTCAAGAACT 82259 .......... .......... .......... .......... .......... .......... 240 AACAACTTTT TGAAACTAGT TGTTTTTTGA GAAACAATGG AGATTTTACT TCTCATTTCT 82319 .......... .......... .......... .......... .......... .......... 240 CTGTGTGAAG ACTGCCTTTT TGTGTCTTAC CAACTTTCTG TATTATTTCA ATCACTTGAA 82379 .......... .......... .......... .......... .......... .......... 240 TGCTTACTCG TTATTCATTT CTCCTCAGAA CGGAAGTCTT GGAGCAATAG TAAACTTATC 82439 .......... .......... .......... .......... .......... .......... 240 TCCGTGTAAG TTCCAAGTCA TTGTTTGAGC TGCAGCGGAA CCAACCACTG AATGCTTGCT 82499 .......... .......... .......... .......... .......... .......... 240 TCAGGTGCGG CCCTTCCACG TACCCTGCAT GCAACGGCTT CCTTTCTAAT TCAATTCTGT 82559 .......... .......... .......... .......... .......... .......... 240 CTCAGTACAA ATAGTTCATT GGTTTCTTAT AACATAATTT TTCCTCAGCC ACATAAGAGG 82619 .......... .......... .......... .......... .......... .......... 240 AATTATATAT ATTCCTTTAT TAGGGATAAT TACGATCCCT AAACACTTCG ATAAACTAGT 82679 .......... .......... .......... .......... .......... .......... 240 TTATTTATAA AATACAAACA ATGTATAAGT CGTGTATACT TTACTAAACA TCATATACTA 82739 .......... .......... .......... .......... .......... .......... 240 ATACACAACA TATATACTTA ATAGTGTGTA TGTTACATTT ATTTTTTAGT AAACTAGTCG 82799 .......... .......... .......... .......... .......... .......... 240 GCTGAACGGT ATATATCTAT AACTTTCTTA ATTTTTTTAG AAATAAACTT CGAACTTTAT 82859 .......... .......... .......... .......... .......... .......... 240 AGATTCACAA TAGTGTAAAC TTTATAGGTT CACTTGATTG ATTGGTATCT ATATGTTTCT 82919 .......... .......... .......... .......... .......... .......... 240 TCTACATGAC TTCAAGTTAC GTCTCCTTTG TTATAATTGT AATTATATTT GATTCTATAA 82979 .......... .......... .......... .......... .......... .......... 240 CATCAGTTTT GTGTTCTTTT TTCTTTTAAA AAATGCTTTT AAGTTAGCTA AAAGCTTGGC 83039 .......... .......... .......... .......... .......... .......... 240 CAAACAGGCA ATAGACAAGT GT-TAAGAGC CTGTTTGGCT CAGCTTAAAA ACTGGTCAAA 83098 | | | | | | || ||||||| ||||| | | |||||||||| ||| ||||| .......AGA AAAAATTATT GTCTAAGAGC TTGTTTAGTT CAGCTTAAAA GCTGATCAAA 293 CTGACTTAAA AACTGGTTTT TGACTTATTT AGCTGTTTGG CAATACTCAA AATAACTTAT 83158 |||||||||| ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| CTGACTTAAA AACTGATTTT TGACTTATTT AGTTGTTTGG CAATACTCAA AATAACTTAT 353 TTTAAGTT-- -TAAAAAAAC TTATTTTAGG TCAAAAGTTA AAAGCT-GGG TAGAGATGCT 83214 |||||||| |||||||| |||||||| | ||||||||| |||||| ||| ||| | ||| TTTAAGTTAA AAAAAAAAAC TTATTTTAAG CCAAAAGTTA AAAGCTGGGG TAGGGGTGC- 412 TTTTTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGATCAC ATTTTTACGT TTTTGGCCTT 83274 ||||||| |||||||||| |||||||||| |||||| ||| ||||||| | ||||| |||| ---TTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGACCAC ATTTTTATCT TTTTGCCCTT 469 AATATTTTTA TACAATCTCC AAATTACCTA CATAACTCTA ATATC 83319 |||||||||| |||||||||| |||||| | | |||||||||| | ||| AATATTTTTA TACAATCTCC AAATTATCCA CATAACTCTA ACATC 514 hqPGS_C04HBa0127E11.1+_SGN-E233735- (83047 83319) ******************************************************************************** EST sequence 109 -strand 484 n (File: SGN-E377238-) 1 GTGTTACATA GTTGCAAGTT GCAACTATTT CTAACAATCG ACTCTAGATG ATTTTTTTCG 61 ATTAAAATAA TAAAAAAAGA AATTTATATG AATAGTTATT TTTTTAACCA AAGTGCATAA 121 ATTGGAAACT CATAAATTTG TGACTTAGGT TACATGGTTG AGAACTGCCT CAAACTTATA 181 ATGTCTACTA TTTAAGTGGA GATACGTAAA AGAAAAAATT ATTGTCTAAG AGCTTGTTTA 241 GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA TTTAGTTGTT 301 TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT AAGCCAAAAG 361 TTAAAAGCTG GGGTAGGGGT GCTTTTTTTT TAGCTTATAA GCTGTTTTAA GTTGACCACA 421 TTTTTATCTT TTTGCCCTTA ATATTTTTAT ACAATCTCCA AATTATCCAC ATAACTCTAA 481 CATC Predicted gene structure (within gDNA segment 79304 to 84090): Exon 1 80108 80142 ( 35 n); cDNA 134 168 ( 35 n); score: 0.671 Intron 1 80143 80866 ( 724 n); Pd: 0.000 (s: 0), Pa: 0.038 (s: 0.60) Exon 2 80867 80911 ( 45 n); cDNA 169 210 ( 42 n); score: 0.600 Intron 2 80912 83046 (2135 n); Pd: 0.000 (s: 0.60), Pa: 0.268 (s: 0.70) Exon 3 83047 83319 ( 273 n); cDNA 211 484 ( 274 n); score: 0.844 MATCH C04HBa0127E11.1+ SGN-E377238- 0.844 353 0.729 C PGS_C04HBa0127E11.1+_SGN-E377238- (80108 80142,80867 80911,83047 83319) Alignment (genomic DNA sequence = upper lines): AAATTTGTTG C-TAGGTTCT AGTGAGTGAG AAATGAACTA GGGGCTTGTT CAATTTCATG 80166 |||||||| | |||||| | || |||| || || AAATTTGTGA CTTAGGTTAC A-TGGTTGAG AACTGC.... .......... .......... 168 AATTATTGCT AGGATTAGGT TTGTTTGCTA TATCTCATTT GTCAAGAGTT TACGTTCACC 80226 .......... .......... .......... .......... .......... .......... 168 GAGTTTTGGT GTTGTAAGCT GTGGGACGAT AACACGAAAC ACAAGCATCA GGGGAAGTTG 80286 .......... .......... .......... .......... .......... .......... 168 TTGCTTGTGA TGATGAATTT GGTGGGGTTT GTTCTGTTGT TTGCAGACCT CACAATAAGC 80346 .......... .......... .......... .......... .......... .......... 168 TGCTTTGATC ACATTGTAAC AAGATATAAT AGGGGATCAG TGTGGACTAT GAAAACCTGT 80406 .......... .......... .......... .......... .......... .......... 168 AGTTCCACAT GAATGTTTTG TAAGGAAACC ATGGCGGTTT CCGTTGAATT CAATTCTGTA 80466 .......... .......... .......... .......... .......... .......... 168 ATTTGTTGAA ACTATATCAG TTGTGAGCTT AAACTTTCCT ACTCAAAAGA TTGCTATGGA 80526 .......... .......... .......... .......... .......... .......... 168 CTTCAATTTA TTACTCAACT TACATTGTGT TATCTTGAAT GGGTGCTATA ATTAGATGTT 80586 .......... .......... .......... .......... .......... .......... 168 TTCGACATCT CAATGATTGA GTTGACACCA TACTGTATAA AATGAAATGG TTCATTTATT 80646 .......... .......... .......... .......... .......... .......... 168 GCATTACTGG TTACACGTGT CGACTGATCA ACTAATGCAT GGGACAGTGT GAAGTTGAAA 80706 .......... .......... .......... .......... .......... .......... 168 CATGAAATGC TGTGGAGGCG AACGTATAAG GAGGATAGAA CTCTAAATTT CTATACTCAA 80766 .......... .......... .......... .......... .......... .......... 168 GCTTTCTTAG ATTGGTTATG GACCAGATAA TCTTGCTACA GCTTGATGTT TATTCTATGT 80826 .......... .......... .......... .......... .......... .......... 168 ATAAATGTGC GATGTGTGCC ATAGATTCGA AATGGAACAG CTCAAAGTTT CAACAGAAAG 80886 |||||| || || | .......... .......... .......... .......... CTCAAACTTA TAA-TGT-CT 186 AGTATTTGAT GATTATTTAC GTTAATGATC TTCATGCTAT ATAAGTTCCT CAGTACCACT 80946 | ||||| | | | ||| || || ACTATTT-AA GTGGAGATAC GTAAA..... .......... .......... .......... 210 CAGAAGATTA AACTGTAGTT GTTAAAAATG TTATAGTATA TCATACATTT ATGGATGACA 81006 .......... .......... .......... .......... .......... .......... 210 TGATGCCGTA TTCTATCATG TGCTGCTTCA ACATGGAGGA GGAAGGAGTT ACACTGCAGC 81066 .......... .......... .......... .......... .......... .......... 210 ATCTGGGAGG ATTCTGCTCT GCAGCATCTG AGATTAACGA CACCTATCAG CTTTAATTTT 81126 .......... .......... .......... .......... .......... .......... 210 GCATCAGATT AGGTAAGATG TGGTTATATT CGCTTTACTT GTGATTCTTT TTGAATCTTA 81186 .......... .......... .......... .......... .......... .......... 210 TTAGTTTAGA AGATAAAGCA TATAGATACC CTGTCAGTTA TCTGGCCTTA GAAAGCGAGA 81246 .......... .......... .......... .......... .......... .......... 210 AAACCAATTT TGAGACATCT GATTAGTCTT ATTTCAAGCT GACAACGAGC TAGCCACACC 81306 .......... .......... .......... .......... .......... .......... 210 TTTCTAGCTA TCCCGTTGGG AAAACAAGAA GGTTTATATA TGTCTTGAAG ATTTGCCCCA 81366 .......... .......... .......... .......... .......... .......... 210 ATAGTTCTAA TTTAAATTGG TTCTCTAATA TAGAGCAAGT GTTTCTTGCT TTGTTTACCT 81426 .......... .......... .......... .......... .......... .......... 210 GCATTTCTTT CTTGAGTTGC TGAAGTTTTA TTAGATTTAA ACTAAAGTCT CCTATGTTTT 81486 .......... .......... .......... .......... .......... .......... 210 ATTTACGAGC CGGAGCAATT ATGTTCTCCA TGATCGATTT CAACTCCACG AGCTGGTTGA 81546 .......... .......... .......... .......... .......... .......... 210 TTTTCTTTCT GCATTAATTT CATCTCAAGT AACCATCCAG AGTAGCAAAT GGTGCAAGAA 81606 .......... .......... .......... .......... .......... .......... 210 TACAAACTTT GTTGGATCTG AAGTCTGAAA GCTTCGGTTG ATTTTCTATT TGCTTCCCAC 81666 .......... .......... .......... .......... .......... .......... 210 TTTACGAGAC TATTGATGTA CACTGGAAGG TAATGTTATT GTTTTCAGCA TGCCTATTTA 81726 .......... .......... .......... .......... .......... .......... 210 TCATATTAGT CGTCTTCTCT CGTGTCAAAT CTTGCTGTAT CTGTTTCTGT TCACATTCAT 81786 .......... .......... .......... .......... .......... .......... 210 CTGTTTCAAT CAGAGGAATC TGAATAGAGA ATAAACATGC CATTTCCGCA TTATTAGATA 81846 .......... .......... .......... .......... .......... .......... 210 GATAGTTTGT CTGATATTGG GTAGCATCCA CTCAATGAAC CTGCTTGTTT AATGATCTCA 81906 .......... .......... .......... .......... .......... .......... 210 TTGGATTTTG GGATAAGTCG AGTTTAAGAT GCGAACCATG GGTACCAAGT ACTTGGAAGC 81966 .......... .......... .......... .......... .......... .......... 210 TTTCTATGTA CTCCATGCGT TACTCTTGCC TCTATTGCTC AAATTCTTCA AAAATGTTGG 82026 .......... .......... .......... .......... .......... .......... 210 TGGGTGCGTG TTAGACTCTT GCTAATATGG TGTTTCATAA CGACTATCAC ATTTGGAATT 82086 .......... .......... .......... .......... .......... .......... 210 TCAGTTTAGT TCAAATTCAG CGTTCTCTTT TCCAGGAGAA TAAGATTGTA TCTACAATCA 82146 .......... .......... .......... .......... .......... .......... 210 GTATCGATCA TAGTTGAACC TTGGTCGCCT TGATTATGTC TATTTGTCTC GTAAATAATT 82206 .......... .......... .......... .......... .......... .......... 210 GCATATTTGA AAGAGGGATT TTCAGGGAAC AACATAAAGC ATGCTCAAGA ACTAACAACT 82266 .......... .......... .......... .......... .......... .......... 210 TTTTGAAACT AGTTGTTTTT TGAGAAACAA TGGAGATTTT ACTTCTCATT TCTCTGTGTG 82326 .......... .......... .......... .......... .......... .......... 210 AAGACTGCCT TTTTGTGTCT TACCAACTTT CTGTATTATT TCAATCACTT GAATGCTTAC 82386 .......... .......... .......... .......... .......... .......... 210 TCGTTATTCA TTTCTCCTCA GAACGGAAGT CTTGGAGCAA TAGTAAACTT ATCTCCGTGT 82446 .......... .......... .......... .......... .......... .......... 210 AAGTTCCAAG TCATTGTTTG AGCTGCAGCG GAACCAACCA CTGAATGCTT GCTTCAGGTG 82506 .......... .......... .......... .......... .......... .......... 210 CGGCCCTTCC ACGTACCCTG CATGCAACGG CTTCCTTTCT AATTCAATTC TGTCTCAGTA 82566 .......... .......... .......... .......... .......... .......... 210 CAAATAGTTC ATTGGTTTCT TATAACATAA TTTTTCCTCA GCCACATAAG AGGAATTATA 82626 .......... .......... .......... .......... .......... .......... 210 TATATTCCTT TATTAGGGAT AATTACGATC CCTAAACACT TCGATAAACT AGTTTATTTA 82686 .......... .......... .......... .......... .......... .......... 210 TAAAATACAA ACAATGTATA AGTCGTGTAT ACTTTACTAA ACATCATATA CTAATACACA 82746 .......... .......... .......... .......... .......... .......... 210 ACATATATAC TTAATAGTGT GTATGTTACA TTTATTTTTT AGTAAACTAG TCGGCTGAAC 82806 .......... .......... .......... .......... .......... .......... 210 GGTATATATC TATAACTTTC TTAATTTTTT TAGAAATAAA CTTCGAACTT TATAGATTCA 82866 .......... .......... .......... .......... .......... .......... 210 CAATAGTGTA AACTTTATAG GTTCACTTGA TTGATTGGTA TCTATATGTT TCTTCTACAT 82926 .......... .......... .......... .......... .......... .......... 210 GACTTCAAGT TACGTCTCCT TTGTTATAAT TGTAATTATA TTTGATTCTA TAACATCAGT 82986 .......... .......... .......... .......... .......... .......... 210 TTTGTGTTCT TTTTTCTTTT AAAAAATGCT TTTAAGTTAG CTAAAAGCTT GGCCAAACAG 83046 .......... .......... .......... .......... .......... .......... 210 GCAATAGACA AGTGT-TAAG AGCCTGTTTG GCTCAGCTTA AAAACTGGTC AAACTGACTT 83105 || | | | ||| |||| ||| ||||| | |||||||| ||| ||| || |||||||||| AGAAAAAATT ATTGTCTAAG AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT 270 AAAAACTGGT TTTTGACTTA TTTAGCTGTT TGGCAATACT CAAAATAACT TATTTTAAGT 83165 |||||||| | |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AAAAACTGAT TTTTGACTTA TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT 330 T---TAAAAA AACTTATTTT AGGTCAAAAG TTAAAAGCT- GGGTAGAGAT GCTTTTTTTT 83221 | ||||| |||||||||| | | |||||| ||||||||| |||||| | | || |||| TAAAAAAAAA AACTTATTTT AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT GC----TTTT 386 TTTTTAGCTT ATAAGCTGTT TTAAGTTGAT CACATTTTTA CGTTTTTGGC CTTAATATTT 83281 |||||||||| |||||||||| ||||||||| |||||||||| |||||| | |||||||||| TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CACATTTTTA TCTTTTTGCC CTTAATATTT 446 TTATACAATC TCCAAATTAC CTACATAACT CTAATATC 83319 |||||||||| ||||||||| | |||||||| |||| ||| TTATACAATC TCCAAATTAT CCACATAACT CTAACATC 484 hqPGS_C04HBa0127E11.1+_SGN-E377238- (83047 83319) ******************************************************************************** EST sequence 116 -strand 666 n (File: SGN-E237992-) 1 TTTCCAAATG AAACAAAAGA CAATTAGGTG TTAGTTGATA AATATTAAGC GTTAAATTCG 61 ATTTTTTATA TATAAGTTTT CTAGTGCTTA AATATAATTG GGAAGGTCAA GGGGTTTGTG 121 ACTTAAGTTA GTGATGTCTG GTATTTAAGT GGAGATACGT AAAAAGACAA AATTATTATC 181 TCTGTGTTAC ATAGTTGCAA GTTGCAACTA TTTCTAACAA TCGACTCTAG ATGATTTTTT 241 TCGATTAAAA TAATAAAAAA AGAAATTTAT ATGAATAGTT ATTTTTTTAA CCAAAGTGCA 301 TAAATTGGAA ACTCATAAAT TTGTGACTTA GGTTACATGG TTGAGAACTG CCTCAAACTT 361 ATAATGTCTA CTATTTAAGT GGAGATACGT AAAAGAAAAA ATTATTGTCT AAGAGCTTGT 421 TTAGTTCAGC TTAAAAGCTG ATCAAACTGA CTTAAAAACT GATTTTTGAC TTATTTAGTT 481 GTTTGGCAAT ACTCAAAATA ACTTATTTTA AGTTAAAAAA AAAAACTTAT TTTAAGCCAA 541 AAGTTAAAAG CTGGGGTAGG GGTGCTTTTT TTTTAGCTTA TAAGCTGTTT TAAGTTGACC 601 ACATTTTTAT CTTTTTGCCC TTAATATTTT TATACAATCT CCAAATTATC CACATAACTC 661 TAACAT Predicted gene structure (within gDNA segment 78074 to 84080): Exon 1 79201 79223 ( 23 n); cDNA 349 371 ( 23 n); score: 0.696 Intron 1 79224 80693 (1470 n); Pd: 0.000 (s: 0), Pa: 0.903 (s: 0) Exon 2 80694 80714 ( 21 n); cDNA 372 393 ( 22 n); score: 0.500 Intron 2 80715 83046 (2332 n); Pd: 0.000 (s: 0), Pa: 0.268 (s: 0.70) Exon 3 83047 83318 ( 272 n); cDNA 394 666 ( 273 n); score: 0.844 MATCH C04HBa0127E11.1+ SGN-E237992- 0.844 316 0.474 C PGS_C04HBa0127E11.1+_SGN-E237992- (79201 79223,80694 80714,83047 83318) Alignment (genomic DNA sequence = upper lines): TGTTTTGAGC TTCTAATGTC GACGTCTGCA GAGGGAAATG GAGCTATAAT TGATCCTCAG 79260 || | | | || ||||||| || TGCCTCAAAC TTATAATGTC TAC....... .......... .......... .......... 371 AGGCAACAAC AACAGGCGCC TACTGGGGTT GGTACAAATG GTGCTTTAAC AGTGAAAAAA 79320 .......... .......... .......... .......... .......... .......... 371 CCGCCGGTAA AAGACCGGCA TAGTAAGGTT GATGGTAGAG GAAGACGTAT AAGGATGCCA 79380 .......... .......... .......... .......... .......... .......... 371 ATTGTATGTG CGGCAAGAGT TTTTCAGCTT ACTCGTGAAT TGGGTCATAA ATCCGATGGA 79440 .......... .......... .......... .......... .......... .......... 371 CAAACTATTG AATGGCTGCT TCGTCAAGCT GAGCCTTCAA TTATAGCTGC TACTGGTACT 79500 .......... .......... .......... .......... .......... .......... 371 GGTACTATTC CTGCTAGTTT CTCGACTGTA TCTGTATCGG TACGGAACTC AACTGCATCT 79560 .......... .......... .......... .......... .......... .......... 371 CTTGTTTCAT CACTCTCCGC TCCACTTGAT CAGAAATCAT CACAAATGAT TTCACCGGCG 79620 .......... .......... .......... .......... .......... .......... 371 CCGTTTATCC TCGGGAAACG TCTCCGGTCA GATGACGAAA ACATTGAAAA TGGGAATAAG 79680 .......... .......... .......... .......... .......... .......... 371 GATGATGTAG CTGTGGCTGC CGGAGCTGCT ACTGCTGTGG GTCCCACAGC TGGGTTTTGG 79740 .......... .......... .......... .......... .......... .......... 371 GCTGTTCCAG CTAGGCCTGA TTTTGGTCAA ATTTGGAGCT TTGCGGCGGC ACCGCCACCT 79800 .......... .......... .......... .......... .......... .......... 371 GAAATGATGG TGCCAACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG 79860 .......... .......... .......... .......... .......... .......... 371 CAGAGTTCTA GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT 79920 .......... .......... .......... .......... .......... .......... 371 TACTTACCAA TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCAGG TCCTCCACAG 79980 .......... .......... .......... .......... .......... .......... 371 CCCTCTTCCG GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT 80040 .......... .......... .......... .......... .......... .......... 371 TGTTATCGTT ATTGTTGTTA ATATATCGTA TAAATGTGTT TTAATGTTCT TGTTTGTGTT 80100 .......... .......... .......... .......... .......... .......... 371 AGATGAGAAA TTTGTTGCTA GGTTCTAGTG AGTGAGAAAT GAACTAGGGG CTTGTTCAAT 80160 .......... .......... .......... .......... .......... .......... 371 TTCATGAATT ATTGCTAGGA TTAGGTTTGT TTGCTATATC TCATTTGTCA AGAGTTTACG 80220 .......... .......... .......... .......... .......... .......... 371 TTCACCGAGT TTTGGTGTTG TAAGCTGTGG GACGATAACA CGAAACACAA GCATCAGGGG 80280 .......... .......... .......... .......... .......... .......... 371 AAGTTGTTGC TTGTGATGAT GAATTTGGTG GGGTTTGTTC TGTTGTTTGC AGACCTCACA 80340 .......... .......... .......... .......... .......... .......... 371 ATAAGCTGCT TTGATCACAT TGTAACAAGA TATAATAGGG GATCAGTGTG GACTATGAAA 80400 .......... .......... .......... .......... .......... .......... 371 ACCTGTAGTT CCACATGAAT GTTTTGTAAG GAAACCATGG CGGTTTCCGT TGAATTCAAT 80460 .......... .......... .......... .......... .......... .......... 371 TCTGTAATTT GTTGAAACTA TATCAGTTGT GAGCTTAAAC TTTCCTACTC AAAAGATTGC 80520 .......... .......... .......... .......... .......... .......... 371 TATGGACTTC AATTTATTAC TCAACTTACA TTGTGTTATC TTGAATGGGT GCTATAATTA 80580 .......... .......... .......... .......... .......... .......... 371 GATGTTTTCG ACATCTCAAT GATTGAGTTG ACACCATACT GTATAAAATG AAATGGTTCA 80640 .......... .......... .......... .......... .......... .......... 371 TTTATTGCAT TACTGGTTAC ACGTGTCGAC TGATCAACTA ATGCATGGGA CAGTG-TGAA 80699 | | || .......... .......... .......... .......... .......... ...TATTTAA 378 GTTGAAACAT GAAATGCTGT GGAGGCGAAC GTATAAGGAG GATAGAACTC TAAATTTCTA 80759 || || | | | || GTGGAGATAC GTAAA..... .......... .......... .......... .......... 393 TACTCAAGCT TTCTTAGATT GGTTATGGAC CAGATAATCT TGCTACAGCT TGATGTTTAT 80819 .......... .......... .......... .......... .......... .......... 393 TCTATGTATA AATGTGCGAT GTGTGCCATA GATTCGAAAT GGAACAGCTC AAAGTTTCAA 80879 .......... .......... .......... .......... .......... .......... 393 CAGAAAGAGT ATTTGATGAT TATTTACGTT AATGATCTTC ATGCTATATA AGTTCCTCAG 80939 .......... .......... .......... .......... .......... .......... 393 TACCACTCAG AAGATTAAAC TGTAGTTGTT AAAAATGTTA TAGTATATCA TACATTTATG 80999 .......... .......... .......... .......... .......... .......... 393 GATGACATGA TGCCGTATTC TATCATGTGC TGCTTCAACA TGGAGGAGGA AGGAGTTACA 81059 .......... .......... .......... .......... .......... .......... 393 CTGCAGCATC TGGGAGGATT CTGCTCTGCA GCATCTGAGA TTAACGACAC CTATCAGCTT 81119 .......... .......... .......... .......... .......... .......... 393 TAATTTTGCA TCAGATTAGG TAAGATGTGG TTATATTCGC TTTACTTGTG ATTCTTTTTG 81179 .......... .......... .......... .......... .......... .......... 393 AATCTTATTA GTTTAGAAGA TAAAGCATAT AGATACCCTG TCAGTTATCT GGCCTTAGAA 81239 .......... .......... .......... .......... .......... .......... 393 AGCGAGAAAA CCAATTTTGA GACATCTGAT TAGTCTTATT TCAAGCTGAC AACGAGCTAG 81299 .......... .......... .......... .......... .......... .......... 393 CCACACCTTT CTAGCTATCC CGTTGGGAAA ACAAGAAGGT TTATATATGT CTTGAAGATT 81359 .......... .......... .......... .......... .......... .......... 393 TGCCCCAATA GTTCTAATTT AAATTGGTTC TCTAATATAG AGCAAGTGTT TCTTGCTTTG 81419 .......... .......... .......... .......... .......... .......... 393 TTTACCTGCA TTTCTTTCTT GAGTTGCTGA AGTTTTATTA GATTTAAACT AAAGTCTCCT 81479 .......... .......... .......... .......... .......... .......... 393 ATGTTTTATT TACGAGCCGG AGCAATTATG TTCTCCATGA TCGATTTCAA CTCCACGAGC 81539 .......... .......... .......... .......... .......... .......... 393 TGGTTGATTT TCTTTCTGCA TTAATTTCAT CTCAAGTAAC CATCCAGAGT AGCAAATGGT 81599 .......... .......... .......... .......... .......... .......... 393 GCAAGAATAC AAACTTTGTT GGATCTGAAG TCTGAAAGCT TCGGTTGATT TTCTATTTGC 81659 .......... .......... .......... .......... .......... .......... 393 TTCCCACTTT ACGAGACTAT TGATGTACAC TGGAAGGTAA TGTTATTGTT TTCAGCATGC 81719 .......... .......... .......... .......... .......... .......... 393 CTATTTATCA TATTAGTCGT CTTCTCTCGT GTCAAATCTT GCTGTATCTG TTTCTGTTCA 81779 .......... .......... .......... .......... .......... .......... 393 CATTCATCTG TTTCAATCAG AGGAATCTGA ATAGAGAATA AACATGCCAT TTCCGCATTA 81839 .......... .......... .......... .......... .......... .......... 393 TTAGATAGAT AGTTTGTCTG ATATTGGGTA GCATCCACTC AATGAACCTG CTTGTTTAAT 81899 .......... .......... .......... .......... .......... .......... 393 GATCTCATTG GATTTTGGGA TAAGTCGAGT TTAAGATGCG AACCATGGGT ACCAAGTACT 81959 .......... .......... .......... .......... .......... .......... 393 TGGAAGCTTT CTATGTACTC CATGCGTTAC TCTTGCCTCT ATTGCTCAAA TTCTTCAAAA 82019 .......... .......... .......... .......... .......... .......... 393 ATGTTGGTGG GTGCGTGTTA GACTCTTGCT AATATGGTGT TTCATAACGA CTATCACATT 82079 .......... .......... .......... .......... .......... .......... 393 TGGAATTTCA GTTTAGTTCA AATTCAGCGT TCTCTTTTCC AGGAGAATAA GATTGTATCT 82139 .......... .......... .......... .......... .......... .......... 393 ACAATCAGTA TCGATCATAG TTGAACCTTG GTCGCCTTGA TTATGTCTAT TTGTCTCGTA 82199 .......... .......... .......... .......... .......... .......... 393 AATAATTGCA TATTTGAAAG AGGGATTTTC AGGGAACAAC ATAAAGCATG CTCAAGAACT 82259 .......... .......... .......... .......... .......... .......... 393 AACAACTTTT TGAAACTAGT TGTTTTTTGA GAAACAATGG AGATTTTACT TCTCATTTCT 82319 .......... .......... .......... .......... .......... .......... 393 CTGTGTGAAG ACTGCCTTTT TGTGTCTTAC CAACTTTCTG TATTATTTCA ATCACTTGAA 82379 .......... .......... .......... .......... .......... .......... 393 TGCTTACTCG TTATTCATTT CTCCTCAGAA CGGAAGTCTT GGAGCAATAG TAAACTTATC 82439 .......... .......... .......... .......... .......... .......... 393 TCCGTGTAAG TTCCAAGTCA TTGTTTGAGC TGCAGCGGAA CCAACCACTG AATGCTTGCT 82499 .......... .......... .......... .......... .......... .......... 393 TCAGGTGCGG CCCTTCCACG TACCCTGCAT GCAACGGCTT CCTTTCTAAT TCAATTCTGT 82559 .......... .......... .......... .......... .......... .......... 393 CTCAGTACAA ATAGTTCATT GGTTTCTTAT AACATAATTT TTCCTCAGCC ACATAAGAGG 82619 .......... .......... .......... .......... .......... .......... 393 AATTATATAT ATTCCTTTAT TAGGGATAAT TACGATCCCT AAACACTTCG ATAAACTAGT 82679 .......... .......... .......... .......... .......... .......... 393 TTATTTATAA AATACAAACA ATGTATAAGT CGTGTATACT TTACTAAACA TCATATACTA 82739 .......... .......... .......... .......... .......... .......... 393 ATACACAACA TATATACTTA ATAGTGTGTA TGTTACATTT ATTTTTTAGT AAACTAGTCG 82799 .......... .......... .......... .......... .......... .......... 393 GCTGAACGGT ATATATCTAT AACTTTCTTA ATTTTTTTAG AAATAAACTT CGAACTTTAT 82859 .......... .......... .......... .......... .......... .......... 393 AGATTCACAA TAGTGTAAAC TTTATAGGTT CACTTGATTG ATTGGTATCT ATATGTTTCT 82919 .......... .......... .......... .......... .......... .......... 393 TCTACATGAC TTCAAGTTAC GTCTCCTTTG TTATAATTGT AATTATATTT GATTCTATAA 82979 .......... .......... .......... .......... .......... .......... 393 CATCAGTTTT GTGTTCTTTT TTCTTTTAAA AAATGCTTTT AAGTTAGCTA AAAGCTTGGC 83039 .......... .......... .......... .......... .......... .......... 393 CAAACAGGCA ATAGACAAGT GT-TAAGAGC CTGTTTGGCT CAGCTTAAAA ACTGGTCAAA 83098 | | | | | | || ||||||| ||||| | | |||||||||| ||| ||||| .......AGA AAAAATTATT GTCTAAGAGC TTGTTTAGTT CAGCTTAAAA GCTGATCAAA 446 CTGACTTAAA AACTGGTTTT TGACTTATTT AGCTGTTTGG CAATACTCAA AATAACTTAT 83158 |||||||||| ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| CTGACTTAAA AACTGATTTT TGACTTATTT AGTTGTTTGG CAATACTCAA AATAACTTAT 506 TTTAAGTT-- -TAAAAAAAC TTATTTTAGG TCAAAAGTTA AAAGCT-GGG TAGAGATGCT 83214 |||||||| |||||||| |||||||| | ||||||||| |||||| ||| ||| | ||| TTTAAGTTAA AAAAAAAAAC TTATTTTAAG CCAAAAGTTA AAAGCTGGGG TAGGGGTGC- 565 TTTTTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGATCAC ATTTTTACGT TTTTGGCCTT 83274 ||||||| |||||||||| |||||||||| |||||| ||| ||||||| | ||||| |||| ---TTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGACCAC ATTTTTATCT TTTTGCCCTT 622 AATATTTTTA TACAATCTCC AAATTACCTA CATAACTCTA ATAT 83318 |||||||||| |||||||||| |||||| | | |||||||||| | || AATATTTTTA TACAATCTCC AAATTATCCA CATAACTCTA ACAT 666 hqPGS_C04HBa0127E11.1+_SGN-E237992- (83047 83318) ******************************************************************************** EST sequence 144 -strand 434 n (File: SGN-E240879-) 1 ATTTTTTTCG ATTAAAATAA TAAAAAAAGA AATTTATATG AATAGTTATT TTTTTAACCA 61 AAGTGCATAA ATTGGAAACT CATAAATTTG TGACTTAGGT TACATGGTTG AGAACTGCCT 121 CAAACTTATA ATGTCTACTA TTTAAGTGGA GATACGTAAA AGAAAAAATT ATTGTCTAAG 181 AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 241 TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 301 AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT GCTTTTTTTT TAGCTTATAA GCTGTTTTAA 361 GTTGACCACA TTTTTATCTT TTTGCCCTTA ATATTTTTAT ACAATCTCCA AATTATCCAC 421 ATAACTCTAA CATC Predicted gene structure (within gDNA segment 80404 to 84090): Exon 1 83049 83319 ( 271 n); cDNA 163 434 ( 272 n); score: 0.851 MATCH C04HBa0127E11.1+ SGN-E240879- 0.851 271 0.624 C PGS_C04HBa0127E11.1+_SGN-E240879- (83049 83319) Alignment (genomic DNA sequence = upper lines): AATAGACAAG TGT-TAAGAG CCTGTTTGGC TCAGCTTAAA AACTGGTCAA ACTGACTTAA 83107 || | | | ||| |||||| | ||||| | |||||||||| | ||| |||| |||||||||| AAAAAATTAT TGTCTAAGAG CTTGTTTAGT TCAGCTTAAA AGCTGATCAA ACTGACTTAA 222 AAACTGGTTT TTGACTTATT TAGCTGTTTG GCAATACTCA AAATAACTTA TTTTAAGTT- 83166 |||||| ||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||| AAACTGATTT TTGACTTATT TAGTTGTTTG GCAATACTCA AAATAACTTA TTTTAAGTTA 282 --TAAAAAAA CTTATTTTAG GTCAAAAGTT AAAAGCT-GG GTAGAGATGC TTTTTTTTTT 83223 ||||||| ||||||||| | |||||||| ||||||| || |||| | ||| |||||| AAAAAAAAAA CTTATTTTAA GCCAAAAGTT AAAAGCTGGG GTAGGGGTGC ----TTTTTT 338 TTTAGCTTAT AAGCTGTTTT AAGTTGATCA CATTTTTACG TTTTTGGCCT TAATATTTTT 83283 |||||||||| |||||||||| ||||||| || |||||||| |||||| ||| |||||||||| TTTAGCTTAT AAGCTGTTTT AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT 398 ATACAATCTC CAAATTACCT ACATAACTCT AATATC 83319 |||||||||| ||||||| | |||||||||| || ||| ATACAATCTC CAAATTATCC ACATAACTCT AACATC 434 hqPGS_C04HBa0127E11.1+_SGN-E240879- (83049 83319) ******************************************************************************** EST sequence 105 -strand 662 n (File: SGN-E376754-) 1 ACCCTACTAA AGCTGAGCTC CAGGACATGA TAAACGAGGT GGATGCAGAT GGTAATGGAA 61 CCATCGACTT CCCAGAGTTT CTAAACCTTA TGGCCAGGAA GATGAAGGAT ACTGACTCTG 121 AGGAGGAGTT GAAAGAGGCA TTCAGAGTTT TCGACAAGGA TCAAAATGGC TTCATCTCCG 181 CTGCTGAGCT TCGTCATGTG ATGACTAACC TTGGAGAGAA GCTTACTGAT GAAGAAGTCG 241 ATGAGATGAT TAGGGAAGCT GATGTTGATG GTGATGGACA AATCAACTAT GAGGAGTTTG 301 TTAAGGTCAT GATGGCCAAG TAATTCCATT ATCCTCTTGT TACATTTGAA GTTTAGACTT 361 GTCAAAAATG TGAAAAAATC CAAAAATAAT TCATTGGGTA GGCTCTTGTC TAGTATAATG 421 TTAGTCTTAC CATCTCGATG TATTGAACCT TCATTGAATG TAATGTTTTA TTGTATGAGT 481 GGTGTGATCT CTACTTATTT TCTTTAAGTT TGTGTACTTT CTTTGATCCT CTTAGAGCCT 541 GTTTGGCTCA GCTTAAAAAC TGGTCAAACT GACTTAAAAA GCTGGTTTTT GACTTATTTA 601 GCTGTTTGAC AATACTCAAA ATAACTTATT TTAAGTTAAA AAAAACTTAT TTTAAAAAAA 661 AA Predicted gene structure (within gDNA segment 77124 to 83863): Exon 1 78191 78205 ( 15 n); cDNA 494 508 ( 15 n); score: 0.800 Intron 1 78206 79517 (1312 n); Pd: 0.539 (s: 0), Pa: 0.000 (s: 0) Exon 2 79518 79539 ( 22 n); cDNA 509 529 ( 21 n); score: 0.636 Intron 2 79540 83058 (3519 n); Pd: 0.315 (s: 0), Pa: 0.000 (s: 0.96) Exon 3 83059 83191 ( 133 n); cDNA 530 662 ( 133 n); score: 0.921 MATCH C04HBa0127E11.1+ SGN-E376754- 0.921 170 0.257 C PGS_C04HBa0127E11.1+_SGN-E376754- (78191 78205,79518 79539,83059 83191) Alignment (genomic DNA sequence = upper lines): CTTAGTTTAG TTAAGGCGTG TCTCATGAAT TTCGGTCATA CTCATGCCAA TAAAAATGAA 78250 |||| ||| ||||| CTTATTTTCT TTAAG..... .......... .......... .......... .......... 508 TTGAAATATG TATTATCAGT TAAGATCAAG TTAAAAAACA TACATTTTCA AAGTTGGAGT 78310 .......... .......... .......... .......... .......... .......... 508 TTTTTCGTAC ATCCAAAGAA AGTGACCGAT AAAAATTATG ATATAGTGAT GAGTTACTCA 78370 .......... .......... .......... .......... .......... .......... 508 TTCGTTCTTA ATTAAGAGAG CGCAAATTCA AATTTAATCG AACGTCGACC GACCGACGAA 78430 .......... .......... .......... .......... .......... .......... 508 AAGAAACCAC GGAAAGAGAA GTGTGAAAAA TGGAAAGAGA TGGTGAAAAT TTTTGTGTGA 78490 .......... .......... .......... .......... .......... .......... 508 ATGTGAAGAT TGAAGAGAGA GAGAGAGAGG GGAGTGAGCG CGTGAAAGAG GGTAGTGGGT 78550 .......... .......... .......... .......... .......... .......... 508 ACTGTACTGG ATTGCTAGCA GGGATGAGCT GTGAATATAT GTGTAAGAGA GTAGTACTAA 78610 .......... .......... .......... .......... .......... .......... 508 TGTCCCCACC ACCCATGTGA CCTTCTTCCT GTCACCACCA GTTCCTGCTT CTCAATCATT 78670 .......... .......... .......... .......... .......... .......... 508 AGTCCTATTC CCCCCTCCCC CTCCATTGTT GTATCTCTAC TATTTTTACA TACTATTTGT 78730 .......... .......... .......... .......... .......... .......... 508 TTTTTGGTTC TACTCTCATT CTCTTGCTAT ACTTTACAAG AGTGGTGGAT CTTGTATTTT 78790 .......... .......... .......... .......... .......... .......... 508 TTTACATATT TGTTGTTTTG GGGCTCTGTT TTTTTTTTTT TTGCTTCCAT GAATCGAGCT 78850 .......... .......... .......... .......... .......... .......... 508 TTTTCTATTA CTTGAAACTT CAACTGAACC TGCTTTATTG ATTTGTAAAA GTTTTTTTTC 78910 .......... .......... .......... .......... .......... .......... 508 TTCTTTTGTT TGGGGTTTTG TTTAATTGAG CTCTGTTTTC CAGAGCTTGG TGAATTTGTT 78970 .......... .......... .......... .......... .......... .......... 508 GTTTTTCTTC TTTGTTGGGG TTTGCTCAAT TCAGCTCATA AATCCCATAT TGGTGCTCTA 79030 .......... .......... .......... .......... .......... .......... 508 TTTGGACCTG ATTTTCAATT ATTTGTTGTT TTTTATTTGT TGGGGTTTGC TCAATTCAGC 79090 .......... .......... .......... .......... .......... .......... 508 TCACAATTCC CGTATTAGTA CTCTATTTTG GATTTGATTT TCGATTATTG TTGGGTTTTG 79150 .......... .......... .......... .......... .......... .......... 508 TTTGTTGATA AATCCTAGTA ATTTTCCACC ACTACCGTTT TTGCTGCTAG TGTTTTGAGC 79210 .......... .......... .......... .......... .......... .......... 508 TTCTAATGTC GACGTCTGCA GAGGGAAATG GAGCTATAAT TGATCCTCAG AGGCAACAAC 79270 .......... .......... .......... .......... .......... .......... 508 AACAGGCGCC TACTGGGGTT GGTACAAATG GTGCTTTAAC AGTGAAAAAA CCGCCGGTAA 79330 .......... .......... .......... .......... .......... .......... 508 AAGACCGGCA TAGTAAGGTT GATGGTAGAG GAAGACGTAT AAGGATGCCA ATTGTATGTG 79390 .......... .......... .......... .......... .......... .......... 508 CGGCAAGAGT TTTTCAGCTT ACTCGTGAAT TGGGTCATAA ATCCGATGGA CAAACTATTG 79450 .......... .......... .......... .......... .......... .......... 508 AATGGCTGCT TCGTCAAGCT GAGCCTTCAA TTATAGCTGC TACTGGTACT GGTACTATTC 79510 .......... .......... .......... .......... .......... .......... 508 CTGCTAGTTT CTCGACTGTA TCTGTATCGG TACGGAACTC AACTGCATCT CTTGTTTCAT 79570 ||| | ||| | | || ||| .......TTT GTGTACTTTC TTTG-ATCC. .......... .......... .......... 529 CACTCTCCGC TCCACTTGAT CAGAAATCAT CACAAATGAT TTCACCGGCG CCGTTTATCC 79630 .......... .......... .......... .......... .......... .......... 529 TCGGGAAACG TCTCCGGTCA GATGACGAAA ACATTGAAAA TGGGAATAAG GATGATGTAG 79690 .......... .......... .......... .......... .......... .......... 529 CTGTGGCTGC CGGAGCTGCT ACTGCTGTGG GTCCCACAGC TGGGTTTTGG GCTGTTCCAG 79750 .......... .......... .......... .......... .......... .......... 529 CTAGGCCTGA TTTTGGTCAA ATTTGGAGCT TTGCGGCGGC ACCGCCACCT GAAATGATGG 79810 .......... .......... .......... .......... .......... .......... 529 TGCCAACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG CAGAGTTCTA 79870 .......... .......... .......... .......... .......... .......... 529 GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT TACTTACCAA 79930 .......... .......... .......... .......... .......... .......... 529 TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCAGG TCCTCCACAG CCCTCTTCCG 79990 .......... .......... .......... .......... .......... .......... 529 GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT TGTTATCGTT 80050 .......... .......... .......... .......... .......... .......... 529 ATTGTTGTTA ATATATCGTA TAAATGTGTT TTAATGTTCT TGTTTGTGTT AGATGAGAAA 80110 .......... .......... .......... .......... .......... .......... 529 TTTGTTGCTA GGTTCTAGTG AGTGAGAAAT GAACTAGGGG CTTGTTCAAT TTCATGAATT 80170 .......... .......... .......... .......... .......... .......... 529 ATTGCTAGGA TTAGGTTTGT TTGCTATATC TCATTTGTCA AGAGTTTACG TTCACCGAGT 80230 .......... .......... .......... .......... .......... .......... 529 TTTGGTGTTG TAAGCTGTGG GACGATAACA CGAAACACAA GCATCAGGGG AAGTTGTTGC 80290 .......... .......... .......... .......... .......... .......... 529 TTGTGATGAT GAATTTGGTG GGGTTTGTTC TGTTGTTTGC AGACCTCACA ATAAGCTGCT 80350 .......... .......... .......... .......... .......... .......... 529 TTGATCACAT TGTAACAAGA TATAATAGGG GATCAGTGTG GACTATGAAA ACCTGTAGTT 80410 .......... .......... .......... .......... .......... .......... 529 CCACATGAAT GTTTTGTAAG GAAACCATGG CGGTTTCCGT TGAATTCAAT TCTGTAATTT 80470 .......... .......... .......... .......... .......... .......... 529 GTTGAAACTA TATCAGTTGT GAGCTTAAAC TTTCCTACTC AAAAGATTGC TATGGACTTC 80530 .......... .......... .......... .......... .......... .......... 529 AATTTATTAC TCAACTTACA TTGTGTTATC TTGAATGGGT GCTATAATTA GATGTTTTCG 80590 .......... .......... .......... .......... .......... .......... 529 ACATCTCAAT GATTGAGTTG ACACCATACT GTATAAAATG AAATGGTTCA TTTATTGCAT 80650 .......... .......... .......... .......... .......... .......... 529 TACTGGTTAC ACGTGTCGAC TGATCAACTA ATGCATGGGA CAGTGTGAAG TTGAAACATG 80710 .......... .......... .......... .......... .......... .......... 529 AAATGCTGTG GAGGCGAACG TATAAGGAGG ATAGAACTCT AAATTTCTAT ACTCAAGCTT 80770 .......... .......... .......... .......... .......... .......... 529 TCTTAGATTG GTTATGGACC AGATAATCTT GCTACAGCTT GATGTTTATT CTATGTATAA 80830 .......... .......... .......... .......... .......... .......... 529 ATGTGCGATG TGTGCCATAG ATTCGAAATG GAACAGCTCA AAGTTTCAAC AGAAAGAGTA 80890 .......... .......... .......... .......... .......... .......... 529 TTTGATGATT ATTTACGTTA ATGATCTTCA TGCTATATAA GTTCCTCAGT ACCACTCAGA 80950 .......... .......... .......... .......... .......... .......... 529 AGATTAAACT GTAGTTGTTA AAAATGTTAT AGTATATCAT ACATTTATGG ATGACATGAT 81010 .......... .......... .......... .......... .......... .......... 529 GCCGTATTCT ATCATGTGCT GCTTCAACAT GGAGGAGGAA GGAGTTACAC TGCAGCATCT 81070 .......... .......... .......... .......... .......... .......... 529 GGGAGGATTC TGCTCTGCAG CATCTGAGAT TAACGACACC TATCAGCTTT AATTTTGCAT 81130 .......... .......... .......... .......... .......... .......... 529 CAGATTAGGT AAGATGTGGT TATATTCGCT TTACTTGTGA TTCTTTTTGA ATCTTATTAG 81190 .......... .......... .......... .......... .......... .......... 529 TTTAGAAGAT AAAGCATATA GATACCCTGT CAGTTATCTG GCCTTAGAAA GCGAGAAAAC 81250 .......... .......... .......... .......... .......... .......... 529 CAATTTTGAG ACATCTGATT AGTCTTATTT CAAGCTGACA ACGAGCTAGC CACACCTTTC 81310 .......... .......... .......... .......... .......... .......... 529 TAGCTATCCC GTTGGGAAAA CAAGAAGGTT TATATATGTC TTGAAGATTT GCCCCAATAG 81370 .......... .......... .......... .......... .......... .......... 529 TTCTAATTTA AATTGGTTCT CTAATATAGA GCAAGTGTTT CTTGCTTTGT TTACCTGCAT 81430 .......... .......... .......... .......... .......... .......... 529 TTCTTTCTTG AGTTGCTGAA GTTTTATTAG ATTTAAACTA AAGTCTCCTA TGTTTTATTT 81490 .......... .......... .......... .......... .......... .......... 529 ACGAGCCGGA GCAATTATGT TCTCCATGAT CGATTTCAAC TCCACGAGCT GGTTGATTTT 81550 .......... .......... .......... .......... .......... .......... 529 CTTTCTGCAT TAATTTCATC TCAAGTAACC ATCCAGAGTA GCAAATGGTG CAAGAATACA 81610 .......... .......... .......... .......... .......... .......... 529 AACTTTGTTG GATCTGAAGT CTGAAAGCTT CGGTTGATTT TCTATTTGCT TCCCACTTTA 81670 .......... .......... .......... .......... .......... .......... 529 CGAGACTATT GATGTACACT GGAAGGTAAT GTTATTGTTT TCAGCATGCC TATTTATCAT 81730 .......... .......... .......... .......... .......... .......... 529 ATTAGTCGTC TTCTCTCGTG TCAAATCTTG CTGTATCTGT TTCTGTTCAC ATTCATCTGT 81790 .......... .......... .......... .......... .......... .......... 529 TTCAATCAGA GGAATCTGAA TAGAGAATAA ACATGCCATT TCCGCATTAT TAGATAGATA 81850 .......... .......... .......... .......... .......... .......... 529 GTTTGTCTGA TATTGGGTAG CATCCACTCA ATGAACCTGC TTGTTTAATG ATCTCATTGG 81910 .......... .......... .......... .......... .......... .......... 529 ATTTTGGGAT AAGTCGAGTT TAAGATGCGA ACCATGGGTA CCAAGTACTT GGAAGCTTTC 81970 .......... .......... .......... .......... .......... .......... 529 TATGTACTCC ATGCGTTACT CTTGCCTCTA TTGCTCAAAT TCTTCAAAAA TGTTGGTGGG 82030 .......... .......... .......... .......... .......... .......... 529 TGCGTGTTAG ACTCTTGCTA ATATGGTGTT TCATAACGAC TATCACATTT GGAATTTCAG 82090 .......... .......... .......... .......... .......... .......... 529 TTTAGTTCAA ATTCAGCGTT CTCTTTTCCA GGAGAATAAG ATTGTATCTA CAATCAGTAT 82150 .......... .......... .......... .......... .......... .......... 529 CGATCATAGT TGAACCTTGG TCGCCTTGAT TATGTCTATT TGTCTCGTAA ATAATTGCAT 82210 .......... .......... .......... .......... .......... .......... 529 ATTTGAAAGA GGGATTTTCA GGGAACAACA TAAAGCATGC TCAAGAACTA ACAACTTTTT 82270 .......... .......... .......... .......... .......... .......... 529 GAAACTAGTT GTTTTTTGAG AAACAATGGA GATTTTACTT CTCATTTCTC TGTGTGAAGA 82330 .......... .......... .......... .......... .......... .......... 529 CTGCCTTTTT GTGTCTTACC AACTTTCTGT ATTATTTCAA TCACTTGAAT GCTTACTCGT 82390 .......... .......... .......... .......... .......... .......... 529 TATTCATTTC TCCTCAGAAC GGAAGTCTTG GAGCAATAGT AAACTTATCT CCGTGTAAGT 82450 .......... .......... .......... .......... .......... .......... 529 TCCAAGTCAT TGTTTGAGCT GCAGCGGAAC CAACCACTGA ATGCTTGCTT CAGGTGCGGC 82510 .......... .......... .......... .......... .......... .......... 529 CCTTCCACGT ACCCTGCATG CAACGGCTTC CTTTCTAATT CAATTCTGTC TCAGTACAAA 82570 .......... .......... .......... .......... .......... .......... 529 TAGTTCATTG GTTTCTTATA ACATAATTTT TCCTCAGCCA CATAAGAGGA ATTATATATA 82630 .......... .......... .......... .......... .......... .......... 529 TTCCTTTATT AGGGATAATT ACGATCCCTA AACACTTCGA TAAACTAGTT TATTTATAAA 82690 .......... .......... .......... .......... .......... .......... 529 ATACAAACAA TGTATAAGTC GTGTATACTT TACTAAACAT CATATACTAA TACACAACAT 82750 .......... .......... .......... .......... .......... .......... 529 ATATACTTAA TAGTGTGTAT GTTACATTTA TTTTTTAGTA AACTAGTCGG CTGAACGGTA 82810 .......... .......... .......... .......... .......... .......... 529 TATATCTATA ACTTTCTTAA TTTTTTTAGA AATAAACTTC GAACTTTATA GATTCACAAT 82870 .......... .......... .......... .......... .......... .......... 529 AGTGTAAACT TTATAGGTTC ACTTGATTGA TTGGTATCTA TATGTTTCTT CTACATGACT 82930 .......... .......... .......... .......... .......... .......... 529 TCAAGTTACG TCTCCTTTGT TATAATTGTA ATTATATTTG ATTCTATAAC ATCAGTTTTG 82990 .......... .......... .......... .......... .......... .......... 529 TGTTCTTTTT TCTTTTAAAA AATGCTTTTA AGTTAGCTAA AAGCTTGGCC AAACAGGCAA 83050 .......... .......... .......... .......... .......... .......... 529 TAGACAAGTG TTAAGAGCCT GTTTGGCTCA GCTTAAAAAC TGGTCAAACT GACTTAAAAA 83110 | || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC TT-AGAGCCT GTTTGGCTCA GCTTAAAAAC TGGTCAAACT GACTTAAAAA 580 -CTGGTTTTT GACTTATTTA GCTGTTTGGC AATACTCAAA ATAACTTATT TTAAGTTTAA 83169 ||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ||||||| || GCTGGTTTTT GACTTATTTA GCTGTTTGAC AATACTCAAA ATAACTTATT TTAAGTTAAA 640 AAAAACTTAT TTTAGGTCAA AA 83191 |||||||||| |||| || || AAAAACTTAT TTTAAAAAAA AA 662 hqPGS_C04HBa0127E11.1+_SGN-E376754- (83059 83191) ******************************************************************************** EST sequence 114 -strand 748 n (File: SGN-E544203-) 1 AAAGATTTAT CAAAATACTC GTTGCCTATT CATAGGCGGA TTGTCCAGTA TAAAACTGCT 61 TATTATTCAT TTTATCTCCC AGTGGCATGT GCACTTCTTA TGGCAGGAGA GAATCTTGAC 121 AATCATGTTA ATGTCAAGAA CATACTACTC GAAATGGGAA TATATTTCCA AGTTCAGGAT 181 GATTACTTGG ACTGCTTTGC TGATCCAGAG GTATTGGGTA AGATTGGCAC GGATATTCAA 241 GATTTCAAGT GCTCTTGGTT GGTAGTGAAA GCCCTAGAAC ACTGCAATGA TGAGCAAAAA 301 AAGTTATTAC ATGAAAACTA TGGAAAAGAT GACCCTGCTT GTGTTGCTAA AGTAAAGGCG 361 CTCTACAATG ATCTCAAACT TGAGGATGTG TACCTGGAAT ATGAGAGGAG TACATATGAA 421 AAGCTGATCA ACTCCATTGA AGCTCAACCA AGCAAAGCAG TGCAAGCAGT TCTGAAGTCA 481 TTCTTGGCAA AGATATACAA AAGGCAGAAG TAGGAGATAA AGAACTTGTT TGGTTCAGCT 541 TAAAAGCTGG TCAAACTAAC TTAAAAGCTA ATTTTTGACT TATTTAGTTG TTTGGCAATC 601 CTCAAAATAA CTTATTTTAA GTTTTAAAAA AAACTTATTT TAAGCCAAAA GTTAAAAGCT 661 GGGGTAAGAG TGCTTCTTTT TTTCAACTTA TAAACTATTT TAAGTTGACC ACATTTTTAC 721 CTTTTTAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 76795 to 84654): Exon 1 77953 77997 ( 45 n); cDNA 476 520 ( 45 n); score: 0.556 Intron 1 77998 83063 (5066 n); Pd: 0.900 (s: 0.56), Pa: 0.000 (s: 0.86) Exon 2 83064 83262 ( 199 n); cDNA 521 720 ( 200 n); score: 0.849 PPA cDNA 727 748 MATCH C04HBa0127E11.1+ SGN-E544203- 0.849 244 0.326 C PGS_C04HBa0127E11.1+_SGN-E544203- (77953 77997,83064 83262) Alignment (genomic DNA sequence = upper lines): AGGTATTCAT GAAACACA-A TA-AAAAGGG AGAATGCACA TGCACAAGTA CCCTTCTAGA 78010 || |||| | | | | | | || |||||| |||| | | | | || AGTCATTCTT GGCAAAGATA TACAAAAGGC AGAA-GTAGG AG-ATAA... .......... 520 CTATGATCGA AGTTTCAGAG GCACACCTTG ATTAAACTAA TGTCTTATTA TCCTCTGAAC 78070 .......... .......... .......... .......... .......... .......... 520 TTATTTTTTG CTTAATTATA TACACCTTTT GTCTTACGTG ACACACTCCA TGGCTCCACA 78130 .......... .......... .......... .......... .......... .......... 520 CAATTGAGGC GTTGTGCACA AAATTACAAA AAAAAGAAAA TGTTAAAGGG GTAGTAAGAT 78190 .......... .......... .......... .......... .......... .......... 520 CTTAGTTTAG TTAAGGCGTG TCTCATGAAT TTCGGTCATA CTCATGCCAA TAAAAATGAA 78250 .......... .......... .......... .......... .......... .......... 520 TTGAAATATG TATTATCAGT TAAGATCAAG TTAAAAAACA TACATTTTCA AAGTTGGAGT 78310 .......... .......... .......... .......... .......... .......... 520 TTTTTCGTAC ATCCAAAGAA AGTGACCGAT AAAAATTATG ATATAGTGAT GAGTTACTCA 78370 .......... .......... .......... .......... .......... .......... 520 TTCGTTCTTA ATTAAGAGAG CGCAAATTCA AATTTAATCG AACGTCGACC GACCGACGAA 78430 .......... .......... .......... .......... .......... .......... 520 AAGAAACCAC GGAAAGAGAA GTGTGAAAAA TGGAAAGAGA TGGTGAAAAT TTTTGTGTGA 78490 .......... .......... .......... .......... .......... .......... 520 ATGTGAAGAT TGAAGAGAGA GAGAGAGAGG GGAGTGAGCG CGTGAAAGAG GGTAGTGGGT 78550 .......... .......... .......... .......... .......... .......... 520 ACTGTACTGG ATTGCTAGCA GGGATGAGCT GTGAATATAT GTGTAAGAGA GTAGTACTAA 78610 .......... .......... .......... .......... .......... .......... 520 TGTCCCCACC ACCCATGTGA CCTTCTTCCT GTCACCACCA GTTCCTGCTT CTCAATCATT 78670 .......... .......... .......... .......... .......... .......... 520 AGTCCTATTC CCCCCTCCCC CTCCATTGTT GTATCTCTAC TATTTTTACA TACTATTTGT 78730 .......... .......... .......... .......... .......... .......... 520 TTTTTGGTTC TACTCTCATT CTCTTGCTAT ACTTTACAAG AGTGGTGGAT CTTGTATTTT 78790 .......... .......... .......... .......... .......... .......... 520 TTTACATATT TGTTGTTTTG GGGCTCTGTT TTTTTTTTTT TTGCTTCCAT GAATCGAGCT 78850 .......... .......... .......... .......... .......... .......... 520 TTTTCTATTA CTTGAAACTT CAACTGAACC TGCTTTATTG ATTTGTAAAA GTTTTTTTTC 78910 .......... .......... .......... .......... .......... .......... 520 TTCTTTTGTT TGGGGTTTTG TTTAATTGAG CTCTGTTTTC CAGAGCTTGG TGAATTTGTT 78970 .......... .......... .......... .......... .......... .......... 520 GTTTTTCTTC TTTGTTGGGG TTTGCTCAAT TCAGCTCATA AATCCCATAT TGGTGCTCTA 79030 .......... .......... .......... .......... .......... .......... 520 TTTGGACCTG ATTTTCAATT ATTTGTTGTT TTTTATTTGT TGGGGTTTGC TCAATTCAGC 79090 .......... .......... .......... .......... .......... .......... 520 TCACAATTCC CGTATTAGTA CTCTATTTTG GATTTGATTT TCGATTATTG TTGGGTTTTG 79150 .......... .......... .......... .......... .......... .......... 520 TTTGTTGATA AATCCTAGTA ATTTTCCACC ACTACCGTTT TTGCTGCTAG TGTTTTGAGC 79210 .......... .......... .......... .......... .......... .......... 520 TTCTAATGTC GACGTCTGCA GAGGGAAATG GAGCTATAAT TGATCCTCAG AGGCAACAAC 79270 .......... .......... .......... .......... .......... .......... 520 AACAGGCGCC TACTGGGGTT GGTACAAATG GTGCTTTAAC AGTGAAAAAA CCGCCGGTAA 79330 .......... .......... .......... .......... .......... .......... 520 AAGACCGGCA TAGTAAGGTT GATGGTAGAG GAAGACGTAT AAGGATGCCA ATTGTATGTG 79390 .......... .......... .......... .......... .......... .......... 520 CGGCAAGAGT TTTTCAGCTT ACTCGTGAAT TGGGTCATAA ATCCGATGGA CAAACTATTG 79450 .......... .......... .......... .......... .......... .......... 520 AATGGCTGCT TCGTCAAGCT GAGCCTTCAA TTATAGCTGC TACTGGTACT GGTACTATTC 79510 .......... .......... .......... .......... .......... .......... 520 CTGCTAGTTT CTCGACTGTA TCTGTATCGG TACGGAACTC AACTGCATCT CTTGTTTCAT 79570 .......... .......... .......... .......... .......... .......... 520 CACTCTCCGC TCCACTTGAT CAGAAATCAT CACAAATGAT TTCACCGGCG CCGTTTATCC 79630 .......... .......... .......... .......... .......... .......... 520 TCGGGAAACG TCTCCGGTCA GATGACGAAA ACATTGAAAA TGGGAATAAG GATGATGTAG 79690 .......... .......... .......... .......... .......... .......... 520 CTGTGGCTGC CGGAGCTGCT ACTGCTGTGG GTCCCACAGC TGGGTTTTGG GCTGTTCCAG 79750 .......... .......... .......... .......... .......... .......... 520 CTAGGCCTGA TTTTGGTCAA ATTTGGAGCT TTGCGGCGGC ACCGCCACCT GAAATGATGG 79810 .......... .......... .......... .......... .......... .......... 520 TGCCAACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG CAGAGTTCTA 79870 .......... .......... .......... .......... .......... .......... 520 GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT TACTTACCAA 79930 .......... .......... .......... .......... .......... .......... 520 TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCAGG TCCTCCACAG CCCTCTTCCG 79990 .......... .......... .......... .......... .......... .......... 520 GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT TGTTATCGTT 80050 .......... .......... .......... .......... .......... .......... 520 ATTGTTGTTA ATATATCGTA TAAATGTGTT TTAATGTTCT TGTTTGTGTT AGATGAGAAA 80110 .......... .......... .......... .......... .......... .......... 520 TTTGTTGCTA GGTTCTAGTG AGTGAGAAAT GAACTAGGGG CTTGTTCAAT TTCATGAATT 80170 .......... .......... .......... .......... .......... .......... 520 ATTGCTAGGA TTAGGTTTGT TTGCTATATC TCATTTGTCA AGAGTTTACG TTCACCGAGT 80230 .......... .......... .......... .......... .......... .......... 520 TTTGGTGTTG TAAGCTGTGG GACGATAACA CGAAACACAA GCATCAGGGG AAGTTGTTGC 80290 .......... .......... .......... .......... .......... .......... 520 TTGTGATGAT GAATTTGGTG GGGTTTGTTC TGTTGTTTGC AGACCTCACA ATAAGCTGCT 80350 .......... .......... .......... .......... .......... .......... 520 TTGATCACAT TGTAACAAGA TATAATAGGG GATCAGTGTG GACTATGAAA ACCTGTAGTT 80410 .......... .......... .......... .......... .......... .......... 520 CCACATGAAT GTTTTGTAAG GAAACCATGG CGGTTTCCGT TGAATTCAAT TCTGTAATTT 80470 .......... .......... .......... .......... .......... .......... 520 GTTGAAACTA TATCAGTTGT GAGCTTAAAC TTTCCTACTC AAAAGATTGC TATGGACTTC 80530 .......... .......... .......... .......... .......... .......... 520 AATTTATTAC TCAACTTACA TTGTGTTATC TTGAATGGGT GCTATAATTA GATGTTTTCG 80590 .......... .......... .......... .......... .......... .......... 520 ACATCTCAAT GATTGAGTTG ACACCATACT GTATAAAATG AAATGGTTCA TTTATTGCAT 80650 .......... .......... .......... .......... .......... .......... 520 TACTGGTTAC ACGTGTCGAC TGATCAACTA ATGCATGGGA CAGTGTGAAG TTGAAACATG 80710 .......... .......... .......... .......... .......... .......... 520 AAATGCTGTG GAGGCGAACG TATAAGGAGG ATAGAACTCT AAATTTCTAT ACTCAAGCTT 80770 .......... .......... .......... .......... .......... .......... 520 TCTTAGATTG GTTATGGACC AGATAATCTT GCTACAGCTT GATGTTTATT CTATGTATAA 80830 .......... .......... .......... .......... .......... .......... 520 ATGTGCGATG TGTGCCATAG ATTCGAAATG GAACAGCTCA AAGTTTCAAC AGAAAGAGTA 80890 .......... .......... .......... .......... .......... .......... 520 TTTGATGATT ATTTACGTTA ATGATCTTCA TGCTATATAA GTTCCTCAGT ACCACTCAGA 80950 .......... .......... .......... .......... .......... .......... 520 AGATTAAACT GTAGTTGTTA AAAATGTTAT AGTATATCAT ACATTTATGG ATGACATGAT 81010 .......... .......... .......... .......... .......... .......... 520 GCCGTATTCT ATCATGTGCT GCTTCAACAT GGAGGAGGAA GGAGTTACAC TGCAGCATCT 81070 .......... .......... .......... .......... .......... .......... 520 GGGAGGATTC TGCTCTGCAG CATCTGAGAT TAACGACACC TATCAGCTTT AATTTTGCAT 81130 .......... .......... .......... .......... .......... .......... 520 CAGATTAGGT AAGATGTGGT TATATTCGCT TTACTTGTGA TTCTTTTTGA ATCTTATTAG 81190 .......... .......... .......... .......... .......... .......... 520 TTTAGAAGAT AAAGCATATA GATACCCTGT CAGTTATCTG GCCTTAGAAA GCGAGAAAAC 81250 .......... .......... .......... .......... .......... .......... 520 CAATTTTGAG ACATCTGATT AGTCTTATTT CAAGCTGACA ACGAGCTAGC CACACCTTTC 81310 .......... .......... .......... .......... .......... .......... 520 TAGCTATCCC GTTGGGAAAA CAAGAAGGTT TATATATGTC TTGAAGATTT GCCCCAATAG 81370 .......... .......... .......... .......... .......... .......... 520 TTCTAATTTA AATTGGTTCT CTAATATAGA GCAAGTGTTT CTTGCTTTGT TTACCTGCAT 81430 .......... .......... .......... .......... .......... .......... 520 TTCTTTCTTG AGTTGCTGAA GTTTTATTAG ATTTAAACTA AAGTCTCCTA TGTTTTATTT 81490 .......... .......... .......... .......... .......... .......... 520 ACGAGCCGGA GCAATTATGT TCTCCATGAT CGATTTCAAC TCCACGAGCT GGTTGATTTT 81550 .......... .......... .......... .......... .......... .......... 520 CTTTCTGCAT TAATTTCATC TCAAGTAACC ATCCAGAGTA GCAAATGGTG CAAGAATACA 81610 .......... .......... .......... .......... .......... .......... 520 AACTTTGTTG GATCTGAAGT CTGAAAGCTT CGGTTGATTT TCTATTTGCT TCCCACTTTA 81670 .......... .......... .......... .......... .......... .......... 520 CGAGACTATT GATGTACACT GGAAGGTAAT GTTATTGTTT TCAGCATGCC TATTTATCAT 81730 .......... .......... .......... .......... .......... .......... 520 ATTAGTCGTC TTCTCTCGTG TCAAATCTTG CTGTATCTGT TTCTGTTCAC ATTCATCTGT 81790 .......... .......... .......... .......... .......... .......... 520 TTCAATCAGA GGAATCTGAA TAGAGAATAA ACATGCCATT TCCGCATTAT TAGATAGATA 81850 .......... .......... .......... .......... .......... .......... 520 GTTTGTCTGA TATTGGGTAG CATCCACTCA ATGAACCTGC TTGTTTAATG ATCTCATTGG 81910 .......... .......... .......... .......... .......... .......... 520 ATTTTGGGAT AAGTCGAGTT TAAGATGCGA ACCATGGGTA CCAAGTACTT GGAAGCTTTC 81970 .......... .......... .......... .......... .......... .......... 520 TATGTACTCC ATGCGTTACT CTTGCCTCTA TTGCTCAAAT TCTTCAAAAA TGTTGGTGGG 82030 .......... .......... .......... .......... .......... .......... 520 TGCGTGTTAG ACTCTTGCTA ATATGGTGTT TCATAACGAC TATCACATTT GGAATTTCAG 82090 .......... .......... .......... .......... .......... .......... 520 TTTAGTTCAA ATTCAGCGTT CTCTTTTCCA GGAGAATAAG ATTGTATCTA CAATCAGTAT 82150 .......... .......... .......... .......... .......... .......... 520 CGATCATAGT TGAACCTTGG TCGCCTTGAT TATGTCTATT TGTCTCGTAA ATAATTGCAT 82210 .......... .......... .......... .......... .......... .......... 520 ATTTGAAAGA GGGATTTTCA GGGAACAACA TAAAGCATGC TCAAGAACTA ACAACTTTTT 82270 .......... .......... .......... .......... .......... .......... 520 GAAACTAGTT GTTTTTTGAG AAACAATGGA GATTTTACTT CTCATTTCTC TGTGTGAAGA 82330 .......... .......... .......... .......... .......... .......... 520 CTGCCTTTTT GTGTCTTACC AACTTTCTGT ATTATTTCAA TCACTTGAAT GCTTACTCGT 82390 .......... .......... .......... .......... .......... .......... 520 TATTCATTTC TCCTCAGAAC GGAAGTCTTG GAGCAATAGT AAACTTATCT CCGTGTAAGT 82450 .......... .......... .......... .......... .......... .......... 520 TCCAAGTCAT TGTTTGAGCT GCAGCGGAAC CAACCACTGA ATGCTTGCTT CAGGTGCGGC 82510 .......... .......... .......... .......... .......... .......... 520 CCTTCCACGT ACCCTGCATG CAACGGCTTC CTTTCTAATT CAATTCTGTC TCAGTACAAA 82570 .......... .......... .......... .......... .......... .......... 520 TAGTTCATTG GTTTCTTATA ACATAATTTT TCCTCAGCCA CATAAGAGGA ATTATATATA 82630 .......... .......... .......... .......... .......... .......... 520 TTCCTTTATT AGGGATAATT ACGATCCCTA AACACTTCGA TAAACTAGTT TATTTATAAA 82690 .......... .......... .......... .......... .......... .......... 520 ATACAAACAA TGTATAAGTC GTGTATACTT TACTAAACAT CATATACTAA TACACAACAT 82750 .......... .......... .......... .......... .......... .......... 520 ATATACTTAA TAGTGTGTAT GTTACATTTA TTTTTTAGTA AACTAGTCGG CTGAACGGTA 82810 .......... .......... .......... .......... .......... .......... 520 TATATCTATA ACTTTCTTAA TTTTTTTAGA AATAAACTTC GAACTTTATA GATTCACAAT 82870 .......... .......... .......... .......... .......... .......... 520 AGTGTAAACT TTATAGGTTC ACTTGATTGA TTGGTATCTA TATGTTTCTT CTACATGACT 82930 .......... .......... .......... .......... .......... .......... 520 TCAAGTTACG TCTCCTTTGT TATAATTGTA ATTATATTTG ATTCTATAAC ATCAGTTTTG 82990 .......... .......... .......... .......... .......... .......... 520 TGTTCTTTTT TCTTTTAAAA AATGCTTTTA AGTTAGCTAA AAGCTTGGCC AAACAGGCAA 83050 .......... .......... .......... .......... .......... .......... 520 TAGACAAGTG TTAAGAGCCT GTTTGGCTCA GCTTAAAAAC TGGTCAAACT GACTTAAAAA 83110 ||| | | |||||| ||| |||||||| | |||||||||| |||||||| .......... ...AGAACTT GTTTGGTTCA GCTTAAAAGC TGGTCAAACT AACTTAAAAG 567 CTGGTTTTTG ACTTATTTAG CTGTTTGGCA ATACTCAAAA TAACTTATTT TAAG-TTT-A 83168 || |||||| |||||||||| ||||||||| || ||||||| |||||||||| |||| ||| | CTAATTTTTG ACTTATTTAG TTGTTTGGCA ATCCTCAAAA TAACTTATTT TAAGTTTTAA 627 AAAAAACTTA TTTTAGGTCA AAAGTTAAAA GCTGGGTAGA GATGCTTTTT TTTTTTTTAG 83228 |||||||||| ||||| | || |||||||||| |||||| | || | || ||||||| | AAAAAACTTA TTTTAAGCCA AAAGTTAAAA GCTGGGGTAA GA-GTGCTTC TTTTTTTCAA 686 CTTATAAGCT GTTTTAAGTT GATCACATTT TTAC 83262 ||||||| || ||||||||| || ||||||| |||| CTTATAAACT ATTTTAAGTT GACCACATTT TTAC 720 hqPGS_C04HBa0127E11.1+_SGN-E544203- (83064 83262) ******************************************************************************** EST sequence 107 -strand 310 n (File: SGN-E233594-) 1 CTTATAATGT CTACTATTTA AGTGGAGATA CGTAAAAGAA AAAATTATTG TCTAAGAGCT 61 TGTTTAGTTC AGCTTAAAAG CTGATCAAAC TGACTTAAAA ACTGATTTTT GACTTATTTA 121 GTTGTTTGGC AATACTCAAA ATAACTTATT TTAAGTTAAA AAAAAAAACT TATTTTAAGC 181 CAAAAGTTAA AAGCTGGGGT AGGGGTGCTT TTTTTTTAGC TTATAAGCTG TTTTAAGTTG 241 ACCACATTTT TATCTTTTTG CCCTTAATAT TTTTATACAA TCTCCAAATT ATCCACATAA 301 CTCTAACATC Predicted gene structure (within gDNA segment 81644 to 84090): Exon 1 83066 83319 ( 254 n); cDNA 57 310 ( 254 n); score: 0.870 MATCH C04HBa0127E11.1+ SGN-E233594- 0.870 254 0.819 C PGS_C04HBa0127E11.1+_SGN-E233594- (83066 83319) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAACTGGTC AAACTGACTT AAAAACTGGT TTTTGACTTA 83125 ||| ||||| | |||||||| ||| ||| || |||||||||| |||||||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 116 TTTAGCTGTT TGGCAATACT CAAAATAACT TATTTTAAGT T---TAAAAA AACTTATTTT 83182 ||||| |||| |||||||||| |||||||||| |||||||||| | ||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 176 AGGTCAAAAG TTAAAAGCT- GGGTAGAGAT GCTTTTTTTT TTTTTAGCTT ATAAGCTGTT 83241 | | |||||| ||||||||| |||||| | | || |||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT GC----TTTT TTTTTAGCTT ATAAGCTGTT 232 TTAAGTTGAT CACATTTTTA CGTTTTTGGC CTTAATATTT TTATACAATC TCCAAATTAC 83301 ||||||||| |||||||||| |||||| | |||||||||| |||||||||| ||||||||| TTAAGTTGAC CACATTTTTA TCTTTTTGCC CTTAATATTT TTATACAATC TCCAAATTAT 292 CTACATAACT CTAATATC 83319 | |||||||| |||| ||| CCACATAACT CTAACATC 310 hqPGS_C04HBa0127E11.1+_SGN-E233594- (83066 83319) ******************************************************************************** EST sequence 27 +strand 628 n (File: SGN-E353601+) 1 AGCCACACAT CTTTTGTATT CCTCTCTTTA CTCTTGTAAA TTTGTACTTT TAAGTCAAAT 61 AAATTTTCAG CTGTTCTTGT TATCTGCTTT TGAAGATCTA CTTAAGGTAT TATTATTATT 121 ATTTGAAAAT TATTTTTATT CTCGTCTAGC CTAAATGATA GGCTAAACAC TTACTGACAG 181 ATTAATATCA ACCTAAACTA TTGACAACAT GGAACTTGGA CTGTTCTGGT GTTTCTAAGG 241 TCGAAATAGT GTAGTTGGAG AGTGGGAAGA TCTTGGCTTA GTATGGAGTT CCTGTTAAGG 301 CCTATGTTAA GCCATGTGTG AGGCGTTGTT TGAGCTATGT TGAAACCGTA AAAGACCCTT 361 TCATTCTCGG ACTATCTAAC TCATAAACGA ACCGATAGTT ACATCTAAGC GATCCTATCG 421 TATTTGATTC CAAATGTTGA GATTTGTAAG GCTATGCGGA CTAGCGCCAG CTTTGGAACT 481 TGAGAATGGA TATTACTTAT TATTATTATT ATTATTATTT ATAAACAATT TGTGATAGTA 541 AAGAAATATG TGAATGATAG CAAAATATAA TTACTTATGG ATGTAAAATA TAAATTAATT 601 TTGTTTCATT TTTTTAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 77062 to 84620): Exon 1 77980 77997 ( 18 n); cDNA 482 499 ( 18 n); score: 0.611 Intron 1 77998 80018 (2021 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 80019 80035 ( 17 n); cDNA 500 516 ( 17 n); score: 0.824 Intron 2 80036 83628 (3593 n); Pd: 0.096 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 83629 83739 ( 111 n); cDNA 517 627 ( 111 n); score: 0.820 MATCH C04HBa0127E11.1+ SGN-E353601+ 0.820 146 0.232 C PGS_C04HBa0127E11.1+_SGN-E353601+ (77980 77997,80019 80035,83629 83739) Alignment (genomic DNA sequence = upper lines): GAGAATGCAC ATGCACAAGT ACCCTTCTAG ACTATGATCG AAGTTTCAGA GGCACACCTT 78039 ||||||| | || | GAGAATGGAT ATTACTTA.. .......... .......... .......... .......... 499 GATTAAACTA ATGTCTTATT ATCCTCTGAA CTTATTTTTT GCTTAATTAT ATACACCTTT 78099 .......... .......... .......... .......... .......... .......... 499 TGTCTTACGT GACACACTCC ATGGCTCCAC ACAATTGAGG CGTTGTGCAC AAAATTACAA 78159 .......... .......... .......... .......... .......... .......... 499 AAAAAAGAAA ATGTTAAAGG GGTAGTAAGA TCTTAGTTTA GTTAAGGCGT GTCTCATGAA 78219 .......... .......... .......... .......... .......... .......... 499 TTTCGGTCAT ACTCATGCCA ATAAAAATGA ATTGAAATAT GTATTATCAG TTAAGATCAA 78279 .......... .......... .......... .......... .......... .......... 499 GTTAAAAAAC ATACATTTTC AAAGTTGGAG TTTTTTCGTA CATCCAAAGA AAGTGACCGA 78339 .......... .......... .......... .......... .......... .......... 499 TAAAAATTAT GATATAGTGA TGAGTTACTC ATTCGTTCTT AATTAAGAGA GCGCAAATTC 78399 .......... .......... .......... .......... .......... .......... 499 AAATTTAATC GAACGTCGAC CGACCGACGA AAAGAAACCA CGGAAAGAGA AGTGTGAAAA 78459 .......... .......... .......... .......... .......... .......... 499 ATGGAAAGAG ATGGTGAAAA TTTTTGTGTG AATGTGAAGA TTGAAGAGAG AGAGAGAGAG 78519 .......... .......... .......... .......... .......... .......... 499 GGGAGTGAGC GCGTGAAAGA GGGTAGTGGG TACTGTACTG GATTGCTAGC AGGGATGAGC 78579 .......... .......... .......... .......... .......... .......... 499 TGTGAATATA TGTGTAAGAG AGTAGTACTA ATGTCCCCAC CACCCATGTG ACCTTCTTCC 78639 .......... .......... .......... .......... .......... .......... 499 TGTCACCACC AGTTCCTGCT TCTCAATCAT TAGTCCTATT CCCCCCTCCC CCTCCATTGT 78699 .......... .......... .......... .......... .......... .......... 499 TGTATCTCTA CTATTTTTAC ATACTATTTG TTTTTTGGTT CTACTCTCAT TCTCTTGCTA 78759 .......... .......... .......... .......... .......... .......... 499 TACTTTACAA GAGTGGTGGA TCTTGTATTT TTTTACATAT TTGTTGTTTT GGGGCTCTGT 78819 .......... .......... .......... .......... .......... .......... 499 TTTTTTTTTT TTTGCTTCCA TGAATCGAGC TTTTTCTATT ACTTGAAACT TCAACTGAAC 78879 .......... .......... .......... .......... .......... .......... 499 CTGCTTTATT GATTTGTAAA AGTTTTTTTT CTTCTTTTGT TTGGGGTTTT GTTTAATTGA 78939 .......... .......... .......... .......... .......... .......... 499 GCTCTGTTTT CCAGAGCTTG GTGAATTTGT TGTTTTTCTT CTTTGTTGGG GTTTGCTCAA 78999 .......... .......... .......... .......... .......... .......... 499 TTCAGCTCAT AAATCCCATA TTGGTGCTCT ATTTGGACCT GATTTTCAAT TATTTGTTGT 79059 .......... .......... .......... .......... .......... .......... 499 TTTTTATTTG TTGGGGTTTG CTCAATTCAG CTCACAATTC CCGTATTAGT ACTCTATTTT 79119 .......... .......... .......... .......... .......... .......... 499 GGATTTGATT TTCGATTATT GTTGGGTTTT GTTTGTTGAT AAATCCTAGT AATTTTCCAC 79179 .......... .......... .......... .......... .......... .......... 499 CACTACCGTT TTTGCTGCTA GTGTTTTGAG CTTCTAATGT CGACGTCTGC AGAGGGAAAT 79239 .......... .......... .......... .......... .......... .......... 499 GGAGCTATAA TTGATCCTCA GAGGCAACAA CAACAGGCGC CTACTGGGGT TGGTACAAAT 79299 .......... .......... .......... .......... .......... .......... 499 GGTGCTTTAA CAGTGAAAAA ACCGCCGGTA AAAGACCGGC ATAGTAAGGT TGATGGTAGA 79359 .......... .......... .......... .......... .......... .......... 499 GGAAGACGTA TAAGGATGCC AATTGTATGT GCGGCAAGAG TTTTTCAGCT TACTCGTGAA 79419 .......... .......... .......... .......... .......... .......... 499 TTGGGTCATA AATCCGATGG ACAAACTATT GAATGGCTGC TTCGTCAAGC TGAGCCTTCA 79479 .......... .......... .......... .......... .......... .......... 499 ATTATAGCTG CTACTGGTAC TGGTACTATT CCTGCTAGTT TCTCGACTGT ATCTGTATCG 79539 .......... .......... .......... .......... .......... .......... 499 GTACGGAACT CAACTGCATC TCTTGTTTCA TCACTCTCCG CTCCACTTGA TCAGAAATCA 79599 .......... .......... .......... .......... .......... .......... 499 TCACAAATGA TTTCACCGGC GCCGTTTATC CTCGGGAAAC GTCTCCGGTC AGATGACGAA 79659 .......... .......... .......... .......... .......... .......... 499 AACATTGAAA ATGGGAATAA GGATGATGTA GCTGTGGCTG CCGGAGCTGC TACTGCTGTG 79719 .......... .......... .......... .......... .......... .......... 499 GGTCCCACAG CTGGGTTTTG GGCTGTTCCA GCTAGGCCTG ATTTTGGTCA AATTTGGAGC 79779 .......... .......... .......... .......... .......... .......... 499 TTTGCGGCGG CACCGCCACC TGAAATGATG GTGCCAACCT CCGCGGCTGC AGCAGCTGCA 79839 .......... .......... .......... .......... .......... .......... 499 GCCGCGGCAG CGTTAAGTTC GCAGAGTTCT AGATTCTTTC AGCAGCAGAT GGGTGAGGCT 79899 .......... .......... .......... .......... .......... .......... 499 TCAGCTGCTA GAGTTGGGAA TTACTTACCA ATGACTCAAG GGCATCTCAA TTTGCTAGCT 79959 .......... .......... .......... .......... .......... .......... 499 TCTCTATCAG GTCCTCCACA GCCCTCTTCC GGGAGAAGAG ACGACGACGG ACGTTGAAGA 80019 .......... .......... .......... .......... .......... .........T 500 TATGATTATT GTTATTGTTA TTGTTATCGT TATTGTTGTT AATATATCGT ATAAATGTGT 80079 ||| |||||| ||||| TATTATTATT ATTATT.... .......... .......... .......... .......... 516 TTTAATGTTC TTGTTTGTGT TAGATGAGAA ATTTGTTGCT AGGTTCTAGT GAGTGAGAAA 80139 .......... .......... .......... .......... .......... .......... 516 TGAACTAGGG GCTTGTTCAA TTTCATGAAT TATTGCTAGG ATTAGGTTTG TTTGCTATAT 80199 .......... .......... .......... .......... .......... .......... 516 CTCATTTGTC AAGAGTTTAC GTTCACCGAG TTTTGGTGTT GTAAGCTGTG GGACGATAAC 80259 .......... .......... .......... .......... .......... .......... 516 ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA TGAATTTGGT GGGGTTTGTT 80319 .......... .......... .......... .......... .......... .......... 516 CTGTTGTTTG CAGACCTCAC AATAAGCTGC TTTGATCACA TTGTAACAAG ATATAATAGG 80379 .......... .......... .......... .......... .......... .......... 516 GGATCAGTGT GGACTATGAA AACCTGTAGT TCCACATGAA TGTTTTGTAA GGAAACCATG 80439 .......... .......... .......... .......... .......... .......... 516 GCGGTTTCCG TTGAATTCAA TTCTGTAATT TGTTGAAACT ATATCAGTTG TGAGCTTAAA 80499 .......... .......... .......... .......... .......... .......... 516 CTTTCCTACT CAAAAGATTG CTATGGACTT CAATTTATTA CTCAACTTAC ATTGTGTTAT 80559 .......... .......... .......... .......... .......... .......... 516 CTTGAATGGG TGCTATAATT AGATGTTTTC GACATCTCAA TGATTGAGTT GACACCATAC 80619 .......... .......... .......... .......... .......... .......... 516 TGTATAAAAT GAAATGGTTC ATTTATTGCA TTACTGGTTA CACGTGTCGA CTGATCAACT 80679 .......... .......... .......... .......... .......... .......... 516 AATGCATGGG ACAGTGTGAA GTTGAAACAT GAAATGCTGT GGAGGCGAAC GTATAAGGAG 80739 .......... .......... .......... .......... .......... .......... 516 GATAGAACTC TAAATTTCTA TACTCAAGCT TTCTTAGATT GGTTATGGAC CAGATAATCT 80799 .......... .......... .......... .......... .......... .......... 516 TGCTACAGCT TGATGTTTAT TCTATGTATA AATGTGCGAT GTGTGCCATA GATTCGAAAT 80859 .......... .......... .......... .......... .......... .......... 516 GGAACAGCTC AAAGTTTCAA CAGAAAGAGT ATTTGATGAT TATTTACGTT AATGATCTTC 80919 .......... .......... .......... .......... .......... .......... 516 ATGCTATATA AGTTCCTCAG TACCACTCAG AAGATTAAAC TGTAGTTGTT AAAAATGTTA 80979 .......... .......... .......... .......... .......... .......... 516 TAGTATATCA TACATTTATG GATGACATGA TGCCGTATTC TATCATGTGC TGCTTCAACA 81039 .......... .......... .......... .......... .......... .......... 516 TGGAGGAGGA AGGAGTTACA CTGCAGCATC TGGGAGGATT CTGCTCTGCA GCATCTGAGA 81099 .......... .......... .......... .......... .......... .......... 516 TTAACGACAC CTATCAGCTT TAATTTTGCA TCAGATTAGG TAAGATGTGG TTATATTCGC 81159 .......... .......... .......... .......... .......... .......... 516 TTTACTTGTG ATTCTTTTTG AATCTTATTA GTTTAGAAGA TAAAGCATAT AGATACCCTG 81219 .......... .......... .......... .......... .......... .......... 516 TCAGTTATCT GGCCTTAGAA AGCGAGAAAA CCAATTTTGA GACATCTGAT TAGTCTTATT 81279 .......... .......... .......... .......... .......... .......... 516 TCAAGCTGAC AACGAGCTAG CCACACCTTT CTAGCTATCC CGTTGGGAAA ACAAGAAGGT 81339 .......... .......... .......... .......... .......... .......... 516 TTATATATGT CTTGAAGATT TGCCCCAATA GTTCTAATTT AAATTGGTTC TCTAATATAG 81399 .......... .......... .......... .......... .......... .......... 516 AGCAAGTGTT TCTTGCTTTG TTTACCTGCA TTTCTTTCTT GAGTTGCTGA AGTTTTATTA 81459 .......... .......... .......... .......... .......... .......... 516 GATTTAAACT AAAGTCTCCT ATGTTTTATT TACGAGCCGG AGCAATTATG TTCTCCATGA 81519 .......... .......... .......... .......... .......... .......... 516 TCGATTTCAA CTCCACGAGC TGGTTGATTT TCTTTCTGCA TTAATTTCAT CTCAAGTAAC 81579 .......... .......... .......... .......... .......... .......... 516 CATCCAGAGT AGCAAATGGT GCAAGAATAC AAACTTTGTT GGATCTGAAG TCTGAAAGCT 81639 .......... .......... .......... .......... .......... .......... 516 TCGGTTGATT TTCTATTTGC TTCCCACTTT ACGAGACTAT TGATGTACAC TGGAAGGTAA 81699 .......... .......... .......... .......... .......... .......... 516 TGTTATTGTT TTCAGCATGC CTATTTATCA TATTAGTCGT CTTCTCTCGT GTCAAATCTT 81759 .......... .......... .......... .......... .......... .......... 516 GCTGTATCTG TTTCTGTTCA CATTCATCTG TTTCAATCAG AGGAATCTGA ATAGAGAATA 81819 .......... .......... .......... .......... .......... .......... 516 AACATGCCAT TTCCGCATTA TTAGATAGAT AGTTTGTCTG ATATTGGGTA GCATCCACTC 81879 .......... .......... .......... .......... .......... .......... 516 AATGAACCTG CTTGTTTAAT GATCTCATTG GATTTTGGGA TAAGTCGAGT TTAAGATGCG 81939 .......... .......... .......... .......... .......... .......... 516 AACCATGGGT ACCAAGTACT TGGAAGCTTT CTATGTACTC CATGCGTTAC TCTTGCCTCT 81999 .......... .......... .......... .......... .......... .......... 516 ATTGCTCAAA TTCTTCAAAA ATGTTGGTGG GTGCGTGTTA GACTCTTGCT AATATGGTGT 82059 .......... .......... .......... .......... .......... .......... 516 TTCATAACGA CTATCACATT TGGAATTTCA GTTTAGTTCA AATTCAGCGT TCTCTTTTCC 82119 .......... .......... .......... .......... .......... .......... 516 AGGAGAATAA GATTGTATCT ACAATCAGTA TCGATCATAG TTGAACCTTG GTCGCCTTGA 82179 .......... .......... .......... .......... .......... .......... 516 TTATGTCTAT TTGTCTCGTA AATAATTGCA TATTTGAAAG AGGGATTTTC AGGGAACAAC 82239 .......... .......... .......... .......... .......... .......... 516 ATAAAGCATG CTCAAGAACT AACAACTTTT TGAAACTAGT TGTTTTTTGA GAAACAATGG 82299 .......... .......... .......... .......... .......... .......... 516 AGATTTTACT TCTCATTTCT CTGTGTGAAG ACTGCCTTTT TGTGTCTTAC CAACTTTCTG 82359 .......... .......... .......... .......... .......... .......... 516 TATTATTTCA ATCACTTGAA TGCTTACTCG TTATTCATTT CTCCTCAGAA CGGAAGTCTT 82419 .......... .......... .......... .......... .......... .......... 516 GGAGCAATAG TAAACTTATC TCCGTGTAAG TTCCAAGTCA TTGTTTGAGC TGCAGCGGAA 82479 .......... .......... .......... .......... .......... .......... 516 CCAACCACTG AATGCTTGCT TCAGGTGCGG CCCTTCCACG TACCCTGCAT GCAACGGCTT 82539 .......... .......... .......... .......... .......... .......... 516 CCTTTCTAAT TCAATTCTGT CTCAGTACAA ATAGTTCATT GGTTTCTTAT AACATAATTT 82599 .......... .......... .......... .......... .......... .......... 516 TTCCTCAGCC ACATAAGAGG AATTATATAT ATTCCTTTAT TAGGGATAAT TACGATCCCT 82659 .......... .......... .......... .......... .......... .......... 516 AAACACTTCG ATAAACTAGT TTATTTATAA AATACAAACA ATGTATAAGT CGTGTATACT 82719 .......... .......... .......... .......... .......... .......... 516 TTACTAAACA TCATATACTA ATACACAACA TATATACTTA ATAGTGTGTA TGTTACATTT 82779 .......... .......... .......... .......... .......... .......... 516 ATTTTTTAGT AAACTAGTCG GCTGAACGGT ATATATCTAT AACTTTCTTA ATTTTTTTAG 82839 .......... .......... .......... .......... .......... .......... 516 AAATAAACTT CGAACTTTAT AGATTCACAA TAGTGTAAAC TTTATAGGTT CACTTGATTG 82899 .......... .......... .......... .......... .......... .......... 516 ATTGGTATCT ATATGTTTCT TCTACATGAC TTCAAGTTAC GTCTCCTTTG TTATAATTGT 82959 .......... .......... .......... .......... .......... .......... 516 AATTATATTT GATTCTATAA CATCAGTTTT GTGTTCTTTT TTCTTTTAAA AAATGCTTTT 83019 .......... .......... .......... .......... .......... .......... 516 AAGTTAGCTA AAAGCTTGGC CAAACAGGCA ATAGACAAGT GTTAAGAGCC TGTTTGGCTC 83079 .......... .......... .......... .......... .......... .......... 516 AGCTTAAAAA CTGGTCAAAC TGACTTAAAA ACTGGTTTTT GACTTATTTA GCTGTTTGGC 83139 .......... .......... .......... .......... .......... .......... 516 AATACTCAAA ATAACTTATT TTAAGTTTAA AAAAACTTAT TTTAGGTCAA AAGTTAAAAG 83199 .......... .......... .......... .......... .......... .......... 516 CTGGGTAGAG ATGCTTTTTT TTTTTTTAGC TTATAAGCTG TTTTAAGTTG ATCACATTTT 83259 .......... .......... .......... .......... .......... .......... 516 TACGTTTTTG GCCTTAATAT TTTTATACAA TCTCCAAATT ACCTACATAA CTCTAATATC 83319 .......... .......... .......... .......... .......... .......... 516 TCTTTCTTTC ATTTTTCCTT TTTCACGTGT GGATGATAGA TAATTACTAT TACTAATGAA 83379 .......... .......... .......... .......... .......... .......... 516 TAAAAATAAA AAAAATCTTA TCTTTCAAGT GATCTATTCA AATTATATAT TATTAAAATG 83439 .......... .......... .......... .......... .......... .......... 516 TAAAATAAGT TGCACATCTA ACTTAAATAA AAATTTATAT TCTTCTTATA AATAATTTGT 83499 .......... .......... .......... .......... .......... .......... 516 GATAATAAAG AAATATGTGA ATGATAGACA ATTATTATTA CCTATGGATG AAACTAAAAT 83559 .......... .......... .......... .......... .......... .......... 516 AAAATCTTAA ATCGTTCTTT GATCTTTTCA AATTATATAT CTTTAAAATC TATAATAAGT 83619 .......... .......... .......... .......... .......... .......... 516 TTATATTCCT CTTATAAATA ATTTGTGATG AGAAAGAAAT ATGTGAATGA TAGCAAAATA 83679 ||||||| | ||||||||| |||||||| |||||||||| |||||||||| .........A TTTATAAACA ATTTGTGATA GTAAAGAAAT ATGTGAATGA TAGCAAAATA 567 TAATTATTTA TGGCTGTAAA ATATAAATTA ATTAACTTTT ATTATGTTAA CAACTTTTAA 83739 |||||| ||| ||| |||||| |||||||||| ||| ||| ||| | |||| || || TAATTACTTA TGGATGTAAA ATATAAATTA ATTTTGTTTC ATTTTTTTAA AAAAAAAAAA 627 hqPGS_C04HBa0127E11.1+_SGN-E353601+ (83629 83739) ******************************************************************************** EST sequence 43 +strand 699 n (File: SGN-E344770+) 1 TAAGATTTTA GAACGTAGAA AACCACAATT TTCAAAAGCT AATCCCAAAT TCCAAAAATT 61 TTCCGATCGG AGATTTTTTT TTCCGATCAG AAACAGAAAA TAAAAATGGC AGTGAATCCT 121 CAATTATTTC CTAATGGAAT GCCAATTCCT TTCCTCAATG AATTGTTCGT CCTATCTAGA 181 CATGGTGTTG AGTTTGAGGT TGACAAAATC CCTGGTGTAG GAAAAACAAG AACAAGAGGT 241 ACAATCTACT TGTCGAATAT TCGGATGGTC TTTGTTGCAA AGATGCCTGT GGATTTCATT 301 GCTTTTGATA TGCCTTTGCT TTTTGTTTCT GATGAAATAT TTACGCAACC AGTATTCCAC 361 TGCAACAACA TCTCTGGATT TGTAGATCCG GTTGTTCCAG ATAATGAAAA CAGTGCCTTG 421 TACTCCACAC ATACATTCAA GATTTTGTTC AGGATGGTGG TTGTGGGACT TTCGTGCCAT 481 TATTTTTCAA CTTAATCGCC TCTGTGAGAC GAGCTCAGCA ACAGTCTGGG GTACAGCCAC 541 GGGCAGACCC TCTCCAAGCT GCACAAACTC CAGTTGATGA GATGATTAGA CATGCTTATG 601 TCGATCCCAA TGATCCAACG AAAATCTTCT TGCAGCAGCC TACTCCAGAG TCGCACTTAG 661 GCGTCGNTCA TACCAATCAC AACCTGCTTA AACTCAATA Predicted gene structure (within gDNA segment 83624 to 87369): Exon 1 84224 84439 ( 216 n); cDNA 1 215 ( 215 n); score: 0.991 Intron 1 84440 85007 ( 568 n); Pd: 0.989 (s: 1.00), Pa: 0.898 (s: 1.00) Exon 2 85008 85110 ( 103 n); cDNA 216 318 ( 103 n); score: 1.000 Intron 2 85111 85853 ( 743 n); Pd: 0.983 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 3 85854 85925 ( 72 n); cDNA 319 390 ( 72 n); score: 1.000 Intron 3 85926 86272 ( 347 n); Pd: 0.996 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 86273 86478 ( 206 n); cDNA 391 595 ( 205 n); score: 0.995 Intron 4 86479 86591 ( 113 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 86592 86697 ( 106 n); cDNA 596 699 ( 104 n); score: 0.972 MATCH C04HBa0127E11.1+ SGN-E344770+ 0.991 703 1.006 C PGS_C04HBa0127E11.1+_SGN-E344770+ (84224 84439,85008 85110,85854 85925,86273 86478,86592 86697) Alignment (genomic DNA sequence = upper lines): TAAGATTTTA GAACGTAGAA AAACAACAAT TTTCAAAAGC TAATCCCAAA TTCCAAAAAT 84283 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| |||||||||| TAAGATTTTA GAACGTAG-A AAACCACAAT TTTCAAAAGC TAATCCCAAA TTCCAAAAAT 59 TTTCCGATCG GAGATTTTTT TTTCCGATCA GAAACAGAAA ATAAAAATGG CAGTGAATCC 84343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCGATCG GAGATTTTTT TTTCCGATCA GAAACAGAAA ATAAAAATGG CAGTGAATCC 119 TCAATTATTT CCTAATGGAA TGCCAATTCC TTTCCTCAAT GAATTGTTCG TCCTATCTAG 84403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTATTT CCTAATGGAA TGCCAATTCC TTTCCTCAAT GAATTGTTCG TCCTATCTAG 179 ACATGGTGTT GAGTTTGAGG TTGACAAAAT CCCTGGGTGA GTTCATCTTA TTTAGCGAAT 84463 |||||||||| |||||||||| |||||||||| |||||| ACATGGTGTT GAGTTTGAGG TTGACAAAAT CCCTGG.... .......... .......... 215 TCAGAATTTT CATTTAGGGA TTCGTAAAAA AAAATGCTTA ATTTTTGAAC TTGAAACCTC 84523 .......... .......... .......... .......... .......... .......... 215 GATATGAAAT TTGAGCCCCT CAATATTCAA AATTTATTGT AATATGTAAG AATTATCTTA 84583 .......... .......... .......... .......... .......... .......... 215 TCTATATGGT GTAATTTGTG AATCCTCTCT ATTCGTGTAT ATGAAGAAAA AAAAAACTCT 84643 .......... .......... .......... .......... .......... .......... 215 GAAAGTATTT ATGTATAATT TTATGCAAAT ATTATGAGAA GTGGAGGTGA CAGCAGGGGC 84703 .......... .......... .......... .......... .......... .......... 215 GGAGCTAATT AGGTTCCTTT TGATAGAAAA TTATACTGTT TATATATGGT TAAAATTATT 84763 .......... .......... .......... .......... .......... .......... 215 TTTTGTGCCC ATATCTCTAT GTATATATAT ATATTAGATG TTGAACCCCT CAATGAAAAT 84823 .......... .......... .......... .......... .......... .......... 215 ATTGGCTTCG ATGAGGTTAG TTGGAGGATG AGGACGATAA AATCGATGTG AAGTGTCAAA 84883 .......... .......... .......... .......... .......... .......... 215 TATGGTTAAA TGTATTTGCT TTACTTTTTT GAGTTCCTTG TTTTTCAAAC ACATGATTCT 84943 .......... .......... .......... .......... .......... .......... 215 TGCATTGCCT TCATTGTTTT TTATTAGTTC ATGAAGCTGT GTTAATGAGA CTGTTTGTTA 85003 .......... .......... .......... .......... .......... .......... 215 TCAGTGTAGG AAAAACAAGA ACAAGAGGTA CAATCTACTT GTCGAATATT CGGATGGTCT 85063 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TGTAGG AAAAACAAGA ACAAGAGGTA CAATCTACTT GTCGAATATT CGGATGGTCT 271 TTGTTGCAAA GATGCCTGTG GATTTCATTG CTTTTGATAT GCCTTTGGTA TGTTATACTT 85123 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTGTTGCAAA GATGCCTGTG GATTTCATTG CTTTTGATAT GCCTTTG... .......... 318 CTATGTCTTT TTACCGTCCT CCGATTTTGC AAACACCACA TGCTAACCAA CTCTATTCAC 85183 .......... .......... .......... .......... .......... .......... 318 TCATGACTGG TATAGTTTTT CTGTGGATCA GAGAAGAAAA TCGCGAAAAC TCTCTTTTGT 85243 .......... .......... .......... .......... .......... .......... 318 TACTCTTACT ATTATATTAA CAAGTTACTA TGGCGCTCCT TCAGTATCTG CTGTAACTAG 85303 .......... .......... .......... .......... .......... .......... 318 ACCAACATAT GCATAATGTG CAATTCAGAA TGGCGATTCC AAGTATAACG ATTAGCGATA 85363 .......... .......... .......... .......... .......... .......... 318 TTTCTTTTGT TGCTTCTTTT TGAGGCTGAA CAAAACTTTG TGTATGATAT GCTTCTGAAT 85423 .......... .......... .......... .......... .......... .......... 318 CCTGTAGTTT TGTTCTCTCT TTGAAATACA TTTTAGAAAG TCGTATTTTA CTATGTGCAA 85483 .......... .......... .......... .......... .......... .......... 318 TTCAGAATGG CGCGTAGTAG AGCAGATATA TCACTTTGGT CAAATACGAT CCTTCTCCTA 85543 .......... .......... .......... .......... .......... .......... 318 TGAAACTGTA CTGTTTGTTT CTAAAGCTTT GACATGTTAA TTGAATGGTA TTATGACATG 85603 .......... .......... .......... .......... .......... .......... 318 ATTTATATCT GATTTGTATA TTAAGCACAA CATTGCTAGA TACAACATCT GCTAGGAAGC 85663 .......... .......... .......... .......... .......... .......... 318 ATGTTATGGC ATATATTGTT CGGATATTTG TTAAGATGCA TGACATGAAT TCGTGTTCAT 85723 .......... .......... .......... .......... .......... .......... 318 CTGTTCTATG TTTTTGTTCA GAGAAATAAT CTGGTAAGTT GGTGACTTTG CTGAGCAAGA 85783 .......... .......... .......... .......... .......... .......... 318 AGTTACAAAA CTGAGAAATG TAAGCTACAT TTGCTTTGAC AAAGTTTATT TACCTTTTTT 85843 .......... .......... .......... .......... .......... .......... 318 CATTCTGCAG CTTTTTGTTT CTGATGAAAT ATTTACGCAA CCAGTATTCC ACTGCAACAA 85903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... CTTTTTGTTT CTGATGAAAT ATTTACGCAA CCAGTATTCC ACTGCAACAA 368 CATCTCTGGA TTTGTAGATC CGGTAAGCTG AATTACTATT TTCGAATATA CTCAATGTTG 85963 |||||||||| |||||||||| || CATCTCTGGA TTTGTAGATC CG........ .......... .......... .......... 390 TCTAAGGTGC ACTTTAAGCG CACTTAAGGG TGAAGCGAGG TGCAAAGTAT GTTGAGCTTA 86023 .......... .......... .......... .......... .......... .......... 390 GCTGGCGCGT TAGTGCCGTC ATCAAGGCTC TAGCACCTTG TCAATGACTC TAAATGCTAA 86083 .......... .......... .......... .......... .......... .......... 390 ATTCTCTCCT TATATTTGTT ATTATAATCA TTAGTCTAGG ACTACACATA CATATTTGTG 86143 .......... .......... .......... .......... .......... .......... 390 ATTTTCTCCA CCACATTTTA TCTATGCTTA TAGCCCCAAC GAACCTTAGA GACTTTTTGC 86203 .......... .......... .......... .......... .......... .......... 390 TCTTTTTGCT TTCGAAAACA CTGGATTATG TGCGTGCAAC ATTAGATAAC CGATTATGGC 86263 .......... .......... .......... .......... .......... .......... 390 TATGTTCAGG TTGTTCCAGA TAATGAAAAC AGTGCCTTGT ACTCCACACA TACATTCAAG 86323 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TTGTTCCAGA TAATGAAAAC AGTGCCTTGT ACTCCACACA TACATTCAAG 441 ATTTTGTTCA AGGATGGTGG TTGTGGGACT TTCGTGCCAT TATTTTTCAA CTTAATCGCC 86383 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGTTC- AGGATGGTGG TTGTGGGACT TTCGTGCCAT TATTTTTCAA CTTAATCGCC 500 TCTGTGAGAC GAGCTCAGCA ACAGTCTGGG GTACAGCCAC GGGCAGACCC TCTCCAAGCT 86443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTGAGAC GAGCTCAGCA ACAGTCTGGG GTACAGCCAC GGGCAGACCC TCTCCAAGCT 560 GCACAAACTC CAGTTGATGA GATGATTAGA CATGCGTATG TCAACGTTGC TTTCTCCTTT 86503 |||||||||| |||||||||| |||||||||| ||||| GCACAAACTC CAGTTGATGA GATGATTAGA CATGC..... .......... .......... 595 TTACAACGAC ATTAGTTAAC GATCCTTTCC CCCCCTCAAT ATGCTAACTG GTTTTACTGA 86563 .......... .......... .......... .......... .......... .......... 595 ATTCTTATGG TGTTTGTTGA TTTTGCAGTT ATGTCGATCC CAATGATCCA ACGAAAATCT 86623 || |||||||||| |||||||||| |||||||||| .......... .......... ........TT ATGTCGATCC CAATGATCCA ACGAAAATCT 627 TCTTGCAGCA GCCTACTCCA GAGTCGCAAC TTAGGCGTCG TTCATACCAA TCACAACCTG 86683 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| TCTTGCAGCA GCCTACTCCA GAGTCGC-AC TTAGGCGTCG NTCATACCAA TCACAACCTG 686 CTTAAAACTC AATA 86697 ||| |||||| |||| CTT-AAACTC AATA 699 hqPGS_C04HBa0127E11.1+_SGN-E344770+ (84224 84439,85008 85110,85854 85925,86273 86478,86592 86697) ******************************************************************************** EST sequence 42 +strand 554 n (File: SGN-E333932+) 1 AGACTGTTTG TTATCAGTGT AGGAAAAACA AGAACAAGAG GTACAATCTA CTTGTCGAAT 61 ATTCGGATGG TCTTTGTTGC AAAGATGCCT GTGGATTTCA TTGCTTTTGA TATGCCTTTG 121 GTATGTTATA CTTCTATGTC TTTTTACCGT CCTCCGATTT TGCAAACACC ACATGCTAAC 181 CAACTCTATT CACTCATGAC TGGTATAGTT TTTCTGTGGA TCAGAGAAGA AAATCGCGAA 241 AACTCTCTTT TTGTACTCTT ACTATTATAT TAACAAGTAC TATGGCGCTC CCTTCAGTAT 301 CTGCTGTAAC TAGACCCAAC ATATGCATAA TGTGCAATTC AGAATGGCGA TTTCCAGTAT 361 AACGATTAGC GATATTTCTT TTGTTGCTTC TTTTTGAGGC TGAAACAAAC TTTTGTGTAT 421 GATATGCTTC TGAATCCTGT AGTTTTGTTC TCTCTTTGAA TACATTTTAG AAAGTCGTAT 481 TTTACTATGT GCAATTCAGA ATGGCGCGTA GTAGAGCAGA TATATCACTT TGGTCAATAC 541 GATCCTTCTC CTAT Predicted gene structure (within gDNA segment 84391 to 86154): Exon 1 84991 85544 ( 554 n); cDNA 1 554 ( 554 n); score: 0.970 MATCH C04HBa0127E11.1+ SGN-E333932+ 0.970 554 1.000 C PGS_C04HBa0127E11.1+_SGN-E333932+ (84991 85544) Alignment (genomic DNA sequence = upper lines): AGACTGTTTG TTATCAGTGT AGGAAAAACA AGAACAAGAG GTACAATCTA CTTGTCGAAT 85050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTGTTTG TTATCAGTGT AGGAAAAACA AGAACAAGAG GTACAATCTA CTTGTCGAAT 60 ATTCGGATGG TCTTTGTTGC AAAGATGCCT GTGGATTTCA TTGCTTTTGA TATGCCTTTG 85110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCGGATGG TCTTTGTTGC AAAGATGCCT GTGGATTTCA TTGCTTTTGA TATGCCTTTG 120 GTATGTTATA CTTCTATGTC TTTTTACCGT CCTCCGATTT TGCAAACACC ACATGCTAAC 85170 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTTATA CTTCTATGTC TTTTTACCGT CCTCCGATTT TGCAAACACC ACATGCTAAC 180 CAACTCTATT CACTCATGAC TGGTATAGTT TTTCTGTGGA TCAGAGAAGA AAATCGCGAA 85230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTCTATT CACTCATGAC TGGTATAGTT TTTCTGTGGA TCAGAGAAGA AAATCGCGAA 240 AACTCTCTTT TGTTACTCTT ACTATTATAT TAACAAGTTA CTATGGCGCT -CCTTCAGTA 85289 |||||||||| | ||||||| |||||||||| ||||||| || |||||||||| ||||||||| AACTCTCTTT TTGTACTCTT ACTATTATAT TAACAAG-TA CTATGGCGCT CCCTTCAGTA 299 TCTGCTGTAA CTAGA-CCAA CATATGCATA ATGTGCAATT CAGAATGGCG ATTCCAAGTA 85348 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ||| | |||| TCTGCTGTAA CTAGACCCAA CATATGCATA ATGTGCAATT CAGAATGGCG ATTTCCAGTA 359 TAACGATTAG CGATATTTCT TTTGTTGCTT CTTTTTGAGG CTG-AACAAA ACTTTGTGTA 85407 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| TAACGATTAG CGATATTTCT TTTGTTGCTT CTTTTTGAGG CTGAAACAAA CTTTTGTGTA 419 TGATATGCTT CTGAATCCTG TAGTTTTGTT CTCTCTTTGA AATACATTTT AGAAAGTCGT 85467 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGATATGCTT CTGAATCCTG TAGTTTTGTT CTCTCTTTG- AATACATTTT AGAAAGTCGT 478 ATTTTACTAT GTGCAATTCA GAATGGCGCG TAGTAGAGCA GATATATCAC TTTGGTCAAA 85527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ATTTTACTAT GTGCAATTCA GAATGGCGCG TAGTAGAGCA GATATATCAC TTTGGTC-AA 537 TACGATCCTT CTCCTAT 85544 |||||||||| ||||||| TACGATCCTT CTCCTAT 554 hqPGS_C04HBa0127E11.1+_SGN-E333932+ (84991 85544) ******************************************************************************** EST sequence 83 +strand 660 n (File: SGN-E314876+) 1 TTGACTATGT CGGATCATGG GGACCAGCTA TAATTGGTCA TGCGGATGAT GAGGTGCTAG 61 CAGCATTGGC TGAAACAATG AAGAAAGGAA CGAGTTTCGG TGCTCCATGT CTCCTTGAAA 121 ATACACTGGC AGAGATGGTT ATTTCAGCTG TTCCAAGCAT AGAAATGGTT CGATTTGTCA 181 ACTCTGGTAC AGAAGCATGT ATGGGAGTAC TACGGCTGGC TCGTGCTTTC ACTTGCCGTC 241 CTAAGATCAT CAAATTCGAG GGTTGTTACC ATGGTCATGC TGATCCATTT CTTGTTAAAG 301 CAGGCAGTGG CGTTGCCACC CTCGGTCTTC CTGACTCTCC GGGAGTTCCA AAGGCAGCTA 361 CTATCGATAC TCTGACCGCA CCTTACAATG ACATTTCTGC TGTTGAGAGC CTCTTTGAGG 421 AGCACAAAGG AGAAATAGCC GCTGTAATTC TCGAGCCTGT AGTCGGAAAT GCTGGCTTCA 481 TCCCACCTAA GCTAGAATTT CTTGCTGCCA TTCGCAAGAT CACCAAAGAG AATGATGCAC 541 TTCTTATTTT CGACGAAGTC ATGACTGGAT TTAGATTGGC ATATGGCGGT GCTCAAGAGT 601 ATTTTGGAAT AACTCCAGAT TTGACNACAC TCGGGAAGAT TATTGGCGGT GGCTTGCCAG Predicted gene structure (within gDNA segment 89686 to 87045): Exon 1 89086 89034 ( 53 n); cDNA 1 53 ( 53 n); score: 1.000 Intron 1 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 88261 87655 ( 607 n); cDNA 54 660 ( 607 n); score: 0.998 MATCH C04HBa0127E11.1- SGN-E314876+ 0.998 660 1.000 C PGS_C04HBa0127E11.1-_SGN-E314876+ (89086 89034,88261 87655) Alignment (genomic DNA sequence = upper lines): TTGACTATGT CGGATCATGG GGACCAGCTA TAATTGGTCA TGCGGATGAT GAGGTTTAGT 89027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TTGACTATGT CGGATCATGG GGACCAGCTA TAATTGGTCA TGCGGATGAT GAG....... 53 TCTCTACTCT CAACTCTATG TTAAGCTTGA AATTTCATTA GTCACTGTGC ATTTATTTGG 88967 .......... .......... .......... .......... .......... .......... 53 CCTGGCTTGT TAGTAATAAG TTATTACTGC ATCTACTTGC TTTGTATTTG GTAACATGTT 88907 .......... .......... .......... .......... .......... .......... 53 TTAGAAACTC CGTCTTAAAG CTGCTTCTTG TCTTTGCTCT CATTACAGGT TCGGTAAGTT 88847 .......... .......... .......... .......... .......... .......... 53 TTGTATTTTG GAAGAACCAT TGAATTACTT TGGCCTTAAA TGACTATTTA TGACTACGAA 88787 .......... .......... .......... .......... .......... .......... 53 GAACATATGG TTTAAGTTTT TAATCTTAAC CTGAGACCTC ATGGTGCTTG ACCCATTTAT 88727 .......... .......... .......... .......... .......... .......... 53 TGACCGCTAG GCCACACCCT TGGGTGCTTC TTTTGTTCTT TTTCTTAAAT AGAAATTGGT 88667 .......... .......... .......... .......... .......... .......... 53 ATTTGACGTC CATCTTGTAG ACGGTTCCTG TGATAGTGTA TAAATCAGTA TTATTAAAAG 88607 .......... .......... .......... .......... .......... .......... 53 TTGACTGATG AGCATTTCTT AACTGGGAAC GATTTGGTTG GAGGTTGAGT GAACTGTGTA 88547 .......... .......... .......... .......... .......... .......... 53 GGTTATTGGG TGGATGAAGT GAAAACTCAA GTAGAACATG TCTACAAGTG GATTCTCTTG 88487 .......... .......... .......... .......... .......... .......... 53 AGTTCAGCTT TAAGAACTAT TGCGCAAGAC ACCTCAAAAT CTTCTATGCC CCTCTGTCTT 88427 .......... .......... .......... .......... .......... .......... 53 ATTACACTGT ACTATGGAAA CATAGTTGAT TAAAAGTGTC AGTACTGTAG GTGGGGAGAG 88367 .......... .......... .......... .......... .......... .......... 53 TCCTTTTTGG CATGAAAGGT TTAGGTACGA ACAAGAGAGG GAAAGTTTTT AATGCTTTTT 88307 .......... .......... .......... .......... .......... .......... 53 CCATTGTTTT TGAGGCAATA ATCTTGGTAT GACCTTTCCC TGCAGGTGCT AGCAGCATTG 88247 ||||| |||||||||| .......... .......... .......... .......... .....GTGCT AGCAGCATTG 68 GCTGAAACAA TGAAGAAAGG AACGAGTTTC GGTGCTCCAT GTCTCCTTGA AAATACACTG 88187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAACAA TGAAGAAAGG AACGAGTTTC GGTGCTCCAT GTCTCCTTGA AAATACACTG 128 GCAGAGATGG TTATTTCAGC TGTTCCAAGC ATAGAAATGG TTCGATTTGT CAACTCTGGT 88127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGATGG TTATTTCAGC TGTTCCAAGC ATAGAAATGG TTCGATTTGT CAACTCTGGT 188 ACAGAAGCAT GTATGGGAGT ACTACGGCTG GCTCGTGCTT TCACTTGCCG TCCTAAGATC 88067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGAAGCAT GTATGGGAGT ACTACGGCTG GCTCGTGCTT TCACTTGCCG TCCTAAGATC 248 ATCAAATTCG AGGGTTGTTA CCATGGTCAT GCTGATCCAT TTCTTGTTAA AGCAGGCAGT 88007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAATTCG AGGGTTGTTA CCATGGTCAT GCTGATCCAT TTCTTGTTAA AGCAGGCAGT 308 GGCGTTGCCA CCCTCGGTCT TCCTGACTCT CCGGGAGTTC CAAAGGCAGC TACTATCGAT 87947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGTTGCCA CCCTCGGTCT TCCTGACTCT CCGGGAGTTC CAAAGGCAGC TACTATCGAT 368 ACTCTGACCG CACCTTACAA TGACATTTCT GCTGTTGAGA GCCTCTTTGA GGAGCACAAA 87887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTGACCG CACCTTACAA TGACATTTCT GCTGTTGAGA GCCTCTTTGA GGAGCACAAA 428 GGAGAAATAG CCGCTGTAAT TCTCGAGCCT GTAGTCGGAA ATGCTGGCTT CATCCCACCT 87827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAATAG CCGCTGTAAT TCTCGAGCCT GTAGTCGGAA ATGCTGGCTT CATCCCACCT 488 AAGCTAGAAT TTCTTGCTGC CATTCGCAAG ATCACCAAAG AGAATGATGC ACTTCTTATT 87767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTAGAAT TTCTTGCTGC CATTCGCAAG ATCACCAAAG AGAATGATGC ACTTCTTATT 548 TTCGACGAAG TCATGACTGG ATTTAGATTG GCATATGGCG GTGCTCAAGA GTATTTTGGA 87707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGACGAAG TCATGACTGG ATTTAGATTG GCATATGGCG GTGCTCAAGA GTATTTTGGA 608 ATAACTCCAG ATTTGACAAC ACTCGGGAAG ATTATTGGCG GTGGCTTGCC AG 87655 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| || ATAACTCCAG ATTTGACNAC ACTCGGGAAG ATTATTGGCG GTGGCTTGCC AG 660 hqPGS_C04HBa0127E11.1-_SGN-E314876+ (89086 89034,88261 87655) ******************************************************************************** EST sequence 25 -strand 406 n (File: SGN-E229048-) 1 ATGCTGGAAA GAAGACCGGT CATGCAATGT GTGGTGGCTC CATAAGGGGG ATGTTTGGCT 61 TCTTCTTCGC GGATGGTCCC ATCTATAACT TTTCGGATGC AAAGAAGAGT GATACAGAAA 121 AATTTGGCAG ATTCTATAGA GGGATGCTGG AGGAAGGTGT TTACTTTGCA CCATCACAGT 181 TTGAGGCTGG ATTTACTAGC TTAGCACACA CTCCAGAGGA TATTCAAAGG ACTGTAGCTG 241 CAGCTGAAAA AGTTTTGAAG CAAATTTAAC CACTATATTT CTTTTTGTAT GCTAGATGGA 301 GAGATTTTCC TTTTTAAGTT TTTGTTCTGT TGAATAAAAG GTGATTTTGT AACATATTGT 361 TTATTCAGAA ACATGCTGCA TTATTTTCCA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 88072 to 86286): Exon 1 87462 87076 ( 387 n); cDNA 1 387 ( 387 n); score: 1.000 PPA cDNA 390 406 MATCH C04HBa0127E11.1- SGN-E229048- 1.000 387 0.953 C PGS_C04HBa0127E11.1-_SGN-E229048- (87462 87076) Alignment (genomic DNA sequence = upper lines): ATGCTGGAAA GAAGACCGGT CATGCAATGT GTGGTGGCTC CATAAGGGGG ATGTTTGGCT 87403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTGGAAA GAAGACCGGT CATGCAATGT GTGGTGGCTC CATAAGGGGG ATGTTTGGCT 60 TCTTCTTCGC GGATGGTCCC ATCTATAACT TTTCGGATGC AAAGAAGAGT GATACAGAAA 87343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCGC GGATGGTCCC ATCTATAACT TTTCGGATGC AAAGAAGAGT GATACAGAAA 120 AATTTGGCAG ATTCTATAGA GGGATGCTGG AGGAAGGTGT TTACTTTGCA CCATCACAGT 87283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGGCAG ATTCTATAGA GGGATGCTGG AGGAAGGTGT TTACTTTGCA CCATCACAGT 180 TTGAGGCTGG ATTTACTAGC TTAGCACACA CTCCAGAGGA TATTCAAAGG ACTGTAGCTG 87223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGGCTGG ATTTACTAGC TTAGCACACA CTCCAGAGGA TATTCAAAGG ACTGTAGCTG 240 CAGCTGAAAA AGTTTTGAAG CAAATTTAAC CACTATATTT CTTTTTGTAT GCTAGATGGA 87163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGAAAA AGTTTTGAAG CAAATTTAAC CACTATATTT CTTTTTGTAT GCTAGATGGA 300 GAGATTTTCC TTTTTAAGTT TTTGTTCTGT TGAATAAAAG GTGATTTTGT AACATATTGT 87103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATTTTCC TTTTTAAGTT TTTGTTCTGT TGAATAAAAG GTGATTTTGT AACATATTGT 360 TTATTCAGAA ACATGCTGCA TTATTTT 87076 |||||||||| |||||||||| ||||||| TTATTCAGAA ACATGCTGCA TTATTTT 387 hqPGS_C04HBa0127E11.1-_SGN-E229048- (87462 87076) ******************************************************************************** EST sequence 24 -strand 310 n (File: SGN-E228760-) 1 ATGCAAACCA GAGTGATACA GAAAATTTTG GCAGATTCTA TAGAGGGATG CTGGAGGAAG 61 GTGTTTACTT TGCGCCATCA CAGTTTGAGG CTGGATTTAC TAGCTTAGCA CACACTCCAG 121 AGGATATTCA AAGGACTGTA GCTGCAGCTG AAAAAGTTTT GAAGCAAATT TAACCACTAT 181 ATTTCTTTTT GTATGCTAGA TGGAGAGATT TTCCTTTTTA AGTTTTTGTT CTGTTGAATA 241 AAAGGTGATT TTGTAACATA TTGTTTATTC AGAAACATGC TGCATTAATT TAAAAAAAAA 301 AAAAAAAAAA Predicted gene structure (within gDNA segment 88057 to 86250): Exon 1 87366 87081 ( 286 n); cDNA 1 286 ( 286 n); score: 0.986 PPA cDNA 292 310 MATCH C04HBa0127E11.1- SGN-E228760- 0.986 286 0.923 C PGS_C04HBa0127E11.1-_SGN-E228760- (87366 87081) Alignment (genomic DNA sequence = upper lines): ATGCAAAGAA GAGTGATACA GAAAAATTTG GCAGATTCTA TAGAGGGATG CTGGAGGAAG 87307 ||||||| | |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ATGCAAACCA GAGTGATACA GAAAATTTTG GCAGATTCTA TAGAGGGATG CTGGAGGAAG 60 GTGTTTACTT TGCACCATCA CAGTTTGAGG CTGGATTTAC TAGCTTAGCA CACACTCCAG 87247 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTACTT TGCGCCATCA CAGTTTGAGG CTGGATTTAC TAGCTTAGCA CACACTCCAG 120 AGGATATTCA AAGGACTGTA GCTGCAGCTG AAAAAGTTTT GAAGCAAATT TAACCACTAT 87187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATATTCA AAGGACTGTA GCTGCAGCTG AAAAAGTTTT GAAGCAAATT TAACCACTAT 180 ATTTCTTTTT GTATGCTAGA TGGAGAGATT TTCCTTTTTA AGTTTTTGTT CTGTTGAATA 87127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTTTTT GTATGCTAGA TGGAGAGATT TTCCTTTTTA AGTTTTTGTT CTGTTGAATA 240 AAAGGTGATT TTGTAACATA TTGTTTATTC AGAAACATGC TGCATT 87081 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAAGGTGATT TTGTAACATA TTGTTTATTC AGAAACATGC TGCATT 286 hqPGS_C04HBa0127E11.1-_SGN-E228760- (87366 87081) ******************************************************************************** EST sequence 113 +strand 666 n (File: SGN-E320345+) 1 AGAAGAAAAC GTTCACACTT GAGAAGTCTG AAGAAGCTTT CAGCAAAGCC AAGGAGTTGA 61 TGCCAGGAGG TGTAAATTCC CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA CAACCTATCA 121 TTATTGACTC CGTGAAGGGC TCTCGTATGC GGGACATAGA TGGTAACGAG TACATTGACT 181 ATGTCGGATC ATGGGGACCA GCTATAATTG GTCATGCGGA TGATGAGGTG CTAGCAGCAT 241 TGGCTGAAAC AATGAAGAAA GGAACGAGTT TCGGTGCTCC ATGTCTCCTT GAAAATACAC 301 TGGCAGAGAT GGTTATTTCA GCTGTTCCAA GCATAGAAAT GGTTCGATTT GTCAACTCTG 361 GTACAGAAGC ATGTATGGGA GTACTACGGC TGGCTCGTGC TTTCACTTGC CGTCCTAAGA 421 TCATCAAATT CGAGGGTTGT TACCATGGTC ATGCTGATCC ATTTCTTGTT AAAGCAGGCA 481 GTGGCGTTGC CACCCTCGGT CTTCCTGACT CTCCGGGAGT TCCAAAGGCA GCTACTATCG 541 ATACTCTGAC CGCACCTTAC AATGACATTT CTGCTGTTGA GAGCCTCTTT GANGAGCACA 601 AAGGAGAAAT AGCCGCTGTA ATTCTCGAGC CTGTAGTCGG AAATGCTGGC TTCATCCCAC 661 CTAAGC Predicted gene structure (within gDNA segment 91226 to 87213): Exon 1 90626 90574 ( 53 n); cDNA 1 53 ( 53 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 54 227 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 87823 ( 439 n); cDNA 228 666 ( 439 n); score: 0.998 MATCH C04HBa0127E11.1- SGN-E320345+ 0.998 666 1.000 C PGS_C04HBa0127E11.1-_SGN-E320345+ (90626 90574,89207 89034,88261 87823) Alignment (genomic DNA sequence = upper lines): AGAAGAAAAC GTTCACACTT GAGAAGTCTG AAGAAGCTTT CAGCAAAGCC AAGGTAATCA 90567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AGAAGAAAAC GTTCACACTT GAGAAGTCTG AAGAAGCTTT CAGCAAAGCC AAG....... 53 AAATTCAGTT TTTTTTTTTT TTTTTGGCTT CATGTTCATA CAATTCAATT TGGTGATGTT 90507 .......... .......... .......... .......... .......... .......... 53 ATTCAGTACT CATTAGACAA AAGTAAGGTT CAAAAATCCA TAGACTCAAA ATCCTGGATC 90447 .......... .......... .......... .......... .......... .......... 53 CACCTCATCT TCTAGATAAG GTGGTGATAA TATTCAAGAT TATGGATATT GTTCAGTGTT 90387 .......... .......... .......... .......... .......... .......... 53 TGTTCTTTGA TTTGAAGTGT ATTGGTCAAG ATTTGATTTT TCATGCTAAT ATTGCTGGTA 90327 .......... .......... .......... .......... .......... .......... 53 AAATTGGAGG GGGTTGTCAT GTGACCAGGA GGTTATGGGT TCGAGCTGTA GGTACAGCCT 90267 .......... .......... .......... .......... .......... .......... 53 TTTGCAGAAA TGCAGGTTAA GGCTGCATAC TATAGACCCT TGTGGTCCGG CCCTTCCACC 90207 .......... .......... .......... .......... .......... .......... 53 CCAAGCATAG TGGGAGCTTA AAATTGCTAG CTTTAAGATA TTTGGGTTGG ATGAAGAGAA 90147 .......... .......... .......... .......... .......... .......... 53 GAAAAAGGAT ATGTTGATTT GATAAAGTTG GTGTTAGGTG TACAAACAAA GTCTTAGGCT 90087 .......... .......... .......... .......... .......... .......... 53 CTGAGCTGAA AAGAAAGTAA AAGACTTTGT AATGATATTG TTAATGGTGT GAGGCTTTTT 90027 .......... .......... .......... .......... .......... .......... 53 TTGGAGAAAA CCGTGTGGAT TTGGTTTTAG TCCAAAGTGG ACAATACTGC ACCATGTTTA 89967 .......... .......... .......... .......... .......... .......... 53 AAGTATCTTT GGGTTGTTTT AGCCTAACAG TTGGTTCACC TGCCATTTTG GCATCTGCTG 89907 .......... .......... .......... .......... .......... .......... 53 ATGAATTGAT GTATAACCAG TGCTCTCTGA TCTAACATAC AGTCTAGTTG TCCTCCCATA 89847 .......... .......... .......... .......... .......... .......... 53 TAAGTTAGTA TAGCTTAACT GTGATCTATT TGTGACTTTA TGAGAACCTT GAGTATGTTT 89787 .......... .......... .......... .......... .......... .......... 53 TAGATGTTGG TTGTGCTCAA AAGGCGTAAT TTTTATCACT GTTTAAATTT CATGAATATC 89727 .......... .......... .......... .......... .......... .......... 53 CGAGGTGGTT TGACTACAAA GAGGAGATAT ATTGATGGAT CTGATAATGT AGCACAATTT 89667 .......... .......... .......... .......... .......... .......... 53 CTGCAGCAAA ATATGTTTGT TTGCTTTAGT TGGTTCTGTT TCCCTTTATT TATTCTTTTG 89607 .......... .......... .......... .......... .......... .......... 53 TTCTTGTGTA TCTTCTGATG TGACCTACTG AGATTGGAAC CTATGAGGGG GAAATGCTAA 89547 .......... .......... .......... .......... .......... .......... 53 ACCCTATCAC ATTTTCTAGA TGGGGTAAAA GGTTAGAAAA ATGGCGCTTG AGGAAGAACA 89487 .......... .......... .......... .......... .......... .......... 53 AATTGAACAA CATTTCGTCC TTAGTTGAAA AGGGACTAAC ACTTTGAACC TGAAAATACA 89427 .......... .......... .......... .......... .......... .......... 53 GTTCAACTAA TTTTTCAGTT AATTGGTGTA AGCCTTCAAT CTACAAAGGT ACACTTGATT 89367 .......... .......... .......... .......... .......... .......... 53 CATGTTATTC TTCTTGTGTT GTGCTCAAAA TCTCTATACA TTAGTATCTT GCAGCAGAAT 89307 .......... .......... .......... .......... .......... .......... 53 ACTCCCGAAA GCAAAGAGGA GGAAAGATTC AATCAATTTT ATTAATCCTT AGTCCCTACA 89247 .......... .......... .......... .......... .......... .......... 53 AGTTCTTTCA TTGATTTCAT CGTGTTTTAC TGTTGGTAGG AGTTGATGCC AGGAGGTGTA 89187 | |||||||||| |||||||||| .......... .......... .......... .........G AGTTGATGCC AGGAGGTGTA 74 AATTCCCCTG TCCGTGCTTT CAAGTCAGTT GGCGGACAAC CTATCATTAT TGACTCCGTG 89127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCCCCTG TCCGTGCTTT CAAGTCAGTT GGCGGACAAC CTATCATTAT TGACTCCGTG 134 AAGGGCTCTC GTATGCGGGA CATAGATGGT AACGAGTACA TTGACTATGT CGGATCATGG 89067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGCTCTC GTATGCGGGA CATAGATGGT AACGAGTACA TTGACTATGT CGGATCATGG 194 GGACCAGCTA TAATTGGTCA TGCGGATGAT GAGGTTTAGT TCTCTACTCT CAACTCTATG 89007 |||||||||| |||||||||| |||||||||| ||| GGACCAGCTA TAATTGGTCA TGCGGATGAT GAG....... .......... .......... 227 TTAAGCTTGA AATTTCATTA GTCACTGTGC ATTTATTTGG CCTGGCTTGT TAGTAATAAG 88947 .......... .......... .......... .......... .......... .......... 227 TTATTACTGC ATCTACTTGC TTTGTATTTG GTAACATGTT TTAGAAACTC CGTCTTAAAG 88887 .......... .......... .......... .......... .......... .......... 227 CTGCTTCTTG TCTTTGCTCT CATTACAGGT TCGGTAAGTT TTGTATTTTG GAAGAACCAT 88827 .......... .......... .......... .......... .......... .......... 227 TGAATTACTT TGGCCTTAAA TGACTATTTA TGACTACGAA GAACATATGG TTTAAGTTTT 88767 .......... .......... .......... .......... .......... .......... 227 TAATCTTAAC CTGAGACCTC ATGGTGCTTG ACCCATTTAT TGACCGCTAG GCCACACCCT 88707 .......... .......... .......... .......... .......... .......... 227 TGGGTGCTTC TTTTGTTCTT TTTCTTAAAT AGAAATTGGT ATTTGACGTC CATCTTGTAG 88647 .......... .......... .......... .......... .......... .......... 227 ACGGTTCCTG TGATAGTGTA TAAATCAGTA TTATTAAAAG TTGACTGATG AGCATTTCTT 88587 .......... .......... .......... .......... .......... .......... 227 AACTGGGAAC GATTTGGTTG GAGGTTGAGT GAACTGTGTA GGTTATTGGG TGGATGAAGT 88527 .......... .......... .......... .......... .......... .......... 227 GAAAACTCAA GTAGAACATG TCTACAAGTG GATTCTCTTG AGTTCAGCTT TAAGAACTAT 88467 .......... .......... .......... .......... .......... .......... 227 TGCGCAAGAC ACCTCAAAAT CTTCTATGCC CCTCTGTCTT ATTACACTGT ACTATGGAAA 88407 .......... .......... .......... .......... .......... .......... 227 CATAGTTGAT TAAAAGTGTC AGTACTGTAG GTGGGGAGAG TCCTTTTTGG CATGAAAGGT 88347 .......... .......... .......... .......... .......... .......... 227 TTAGGTACGA ACAAGAGAGG GAAAGTTTTT AATGCTTTTT CCATTGTTTT TGAGGCAATA 88287 .......... .......... .......... .......... .......... .......... 227 ATCTTGGTAT GACCTTTCCC TGCAGGTGCT AGCAGCATTG GCTGAAACAA TGAAGAAAGG 88227 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTGCT AGCAGCATTG GCTGAAACAA TGAAGAAAGG 262 AACGAGTTTC GGTGCTCCAT GTCTCCTTGA AAATACACTG GCAGAGATGG TTATTTCAGC 88167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGAGTTTC GGTGCTCCAT GTCTCCTTGA AAATACACTG GCAGAGATGG TTATTTCAGC 322 TGTTCCAAGC ATAGAAATGG TTCGATTTGT CAACTCTGGT ACAGAAGCAT GTATGGGAGT 88107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCCAAGC ATAGAAATGG TTCGATTTGT CAACTCTGGT ACAGAAGCAT GTATGGGAGT 382 ACTACGGCTG GCTCGTGCTT TCACTTGCCG TCCTAAGATC ATCAAATTCG AGGGTTGTTA 88047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACGGCTG GCTCGTGCTT TCACTTGCCG TCCTAAGATC ATCAAATTCG AGGGTTGTTA 442 CCATGGTCAT GCTGATCCAT TTCTTGTTAA AGCAGGCAGT GGCGTTGCCA CCCTCGGTCT 87987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGGTCAT GCTGATCCAT TTCTTGTTAA AGCAGGCAGT GGCGTTGCCA CCCTCGGTCT 502 TCCTGACTCT CCGGGAGTTC CAAAGGCAGC TACTATCGAT ACTCTGACCG CACCTTACAA 87927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTGACTCT CCGGGAGTTC CAAAGGCAGC TACTATCGAT ACTCTGACCG CACCTTACAA 562 TGACATTTCT GCTGTTGAGA GCCTCTTTGA GGAGCACAAA GGAGAAATAG CCGCTGTAAT 87867 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGACATTTCT GCTGTTGAGA GCCTCTTTGA NGAGCACAAA GGAGAAATAG CCGCTGTAAT 622 TCTCGAGCCT GTAGTCGGAA ATGCTGGCTT CATCCCACCT AAGC 87823 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCTCGAGCCT GTAGTCGGAA ATGCTGGCTT CATCCCACCT AAGC 666 hqPGS_C04HBa0127E11.1-_SGN-E320345+ (90626 90574,89207 89034,88261 87823) ******************************************************************************** EST sequence 91 +strand 540 n (File: SGN-E267726+) 1 GACAACCTAT CATTATTGAC TCCGTGAAGG GCTCTCGTAT GCGGGACATA GATGGTAACG 61 AGTACATTGA CTATGTCGGA TCATGGGGAC CAGCTATAAT TGGTCATGCG GATGATGAGG 121 TGCTAGCAGC ATTGGCTGAA ACAATGAAGA AAGGAACGAG TTTCGGTGCT CCATGTCTCC 181 TTGAAAATAC ACTGGCAGAG ATGGTTATTT CAGCTGTTCC AAGCATAGAA ATGGTTCGAT 241 TTGTCAACTC TGGTACAGAA GCATGTATGG GAGTACTACG GCTGGCTCGT GCTTTCACTT 301 GCCGTCCTAA GATCATCAAA TTCGAGGGTT GTTACCATGG TCATGCTGAT CCATTTCTTG 361 TTAAAGCAGG CAGTGGCGTT GCCACCCTCG GTCTTCCTGA CTCTCCGGGA GTTCCAAAGG 421 CAGCTACTAT CGATACTCTG ACCGCACCTT ACAATGACAT TTCTGCTGTT GAGAGCCTCT 481 TTGAGGAGCA CAAAGGAGAA ATAGCCGCTG TAATTCTCGA GCCTGTAGTC GGAAATGCTG Predicted gene structure (within gDNA segment 89752 to 87231): Exon 1 89152 89034 ( 119 n); cDNA 1 119 ( 119 n); score: 1.000 Intron 1 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 88261 87841 ( 421 n); cDNA 120 540 ( 421 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E267726+ 1.000 540 1.000 C PGS_C04HBa0127E11.1-_SGN-E267726+ (89152 89034,88261 87841) Alignment (genomic DNA sequence = upper lines): GACAACCTAT CATTATTGAC TCCGTGAAGG GCTCTCGTAT GCGGGACATA GATGGTAACG 89093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAACCTAT CATTATTGAC TCCGTGAAGG GCTCTCGTAT GCGGGACATA GATGGTAACG 60 AGTACATTGA CTATGTCGGA TCATGGGGAC CAGCTATAAT TGGTCATGCG GATGATGAGG 89033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGTACATTGA CTATGTCGGA TCATGGGGAC CAGCTATAAT TGGTCATGCG GATGATGAG. 119 TTTAGTTCTC TACTCTCAAC TCTATGTTAA GCTTGAAATT TCATTAGTCA CTGTGCATTT 88973 .......... .......... .......... .......... .......... .......... 119 ATTTGGCCTG GCTTGTTAGT AATAAGTTAT TACTGCATCT ACTTGCTTTG TATTTGGTAA 88913 .......... .......... .......... .......... .......... .......... 119 CATGTTTTAG AAACTCCGTC TTAAAGCTGC TTCTTGTCTT TGCTCTCATT ACAGGTTCGG 88853 .......... .......... .......... .......... .......... .......... 119 TAAGTTTTGT ATTTTGGAAG AACCATTGAA TTACTTTGGC CTTAAATGAC TATTTATGAC 88793 .......... .......... .......... .......... .......... .......... 119 TACGAAGAAC ATATGGTTTA AGTTTTTAAT CTTAACCTGA GACCTCATGG TGCTTGACCC 88733 .......... .......... .......... .......... .......... .......... 119 ATTTATTGAC CGCTAGGCCA CACCCTTGGG TGCTTCTTTT GTTCTTTTTC TTAAATAGAA 88673 .......... .......... .......... .......... .......... .......... 119 ATTGGTATTT GACGTCCATC TTGTAGACGG TTCCTGTGAT AGTGTATAAA TCAGTATTAT 88613 .......... .......... .......... .......... .......... .......... 119 TAAAAGTTGA CTGATGAGCA TTTCTTAACT GGGAACGATT TGGTTGGAGG TTGAGTGAAC 88553 .......... .......... .......... .......... .......... .......... 119 TGTGTAGGTT ATTGGGTGGA TGAAGTGAAA ACTCAAGTAG AACATGTCTA CAAGTGGATT 88493 .......... .......... .......... .......... .......... .......... 119 CTCTTGAGTT CAGCTTTAAG AACTATTGCG CAAGACACCT CAAAATCTTC TATGCCCCTC 88433 .......... .......... .......... .......... .......... .......... 119 TGTCTTATTA CACTGTACTA TGGAAACATA GTTGATTAAA AGTGTCAGTA CTGTAGGTGG 88373 .......... .......... .......... .......... .......... .......... 119 GGAGAGTCCT TTTTGGCATG AAAGGTTTAG GTACGAACAA GAGAGGGAAA GTTTTTAATG 88313 .......... .......... .......... .......... .......... .......... 119 CTTTTTCCAT TGTTTTTGAG GCAATAATCT TGGTATGACC TTTCCCTGCA GGTGCTAGCA 88253 ||||||||| .......... .......... .......... .......... .......... .GTGCTAGCA 128 GCATTGGCTG AAACAATGAA GAAAGGAACG AGTTTCGGTG CTCCATGTCT CCTTGAAAAT 88193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTGGCTG AAACAATGAA GAAAGGAACG AGTTTCGGTG CTCCATGTCT CCTTGAAAAT 188 ACACTGGCAG AGATGGTTAT TTCAGCTGTT CCAAGCATAG AAATGGTTCG ATTTGTCAAC 88133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTGGCAG AGATGGTTAT TTCAGCTGTT CCAAGCATAG AAATGGTTCG ATTTGTCAAC 248 TCTGGTACAG AAGCATGTAT GGGAGTACTA CGGCTGGCTC GTGCTTTCAC TTGCCGTCCT 88073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGTACAG AAGCATGTAT GGGAGTACTA CGGCTGGCTC GTGCTTTCAC TTGCCGTCCT 308 AAGATCATCA AATTCGAGGG TTGTTACCAT GGTCATGCTG ATCCATTTCT TGTTAAAGCA 88013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATCATCA AATTCGAGGG TTGTTACCAT GGTCATGCTG ATCCATTTCT TGTTAAAGCA 368 GGCAGTGGCG TTGCCACCCT CGGTCTTCCT GACTCTCCGG GAGTTCCAAA GGCAGCTACT 87953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGTGGCG TTGCCACCCT CGGTCTTCCT GACTCTCCGG GAGTTCCAAA GGCAGCTACT 428 ATCGATACTC TGACCGCACC TTACAATGAC ATTTCTGCTG TTGAGAGCCT CTTTGAGGAG 87893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGATACTC TGACCGCACC TTACAATGAC ATTTCTGCTG TTGAGAGCCT CTTTGAGGAG 488 CACAAAGGAG AAATAGCCGC TGTAATTCTC GAGCCTGTAG TCGGAAATGC TG 87841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CACAAAGGAG AAATAGCCGC TGTAATTCTC GAGCCTGTAG TCGGAAATGC TG 540 hqPGS_C04HBa0127E11.1-_SGN-E267726+ (89152 89034,88261 87841) ******************************************************************************** EST sequence 70 +strand 545 n (File: SGN-E339460+) 1 GACTGCTGGA ATTCCACGCT TAAGCGGTTA CAAGGACAGG GAACATACGA ACCACTTGGA 61 CAAGATCACC GCGGAACTTA CACAAGGAAT CTTGGATGCT GGAAAGAAGA CCGGTCATGC 121 AATGTGTGGT GGCTCCATAA GGGGGATGTT TGGCTTCTTC TTCGCGGATG GTCCCATCTA 181 TAACTTTTCG GATGCAAAGA AGAGTGATAC AGAAAAATTT GGCAGATTCT ATAGAGGGAT 241 GCTGGAGGAA GGTGTTTACT TTGCACCATC ACAGTTTGAG GCTGGATTTA CTAGCTTAGC 301 ACACACTCCA GAGGATATTC AAAGGACTGT AGCTGCAGCT GAAAAAGTTT TGAAGCAAAT 361 TTAACCACTA TATTTCTTTT TGTATGCTAG ATGGAGAGAT TTTCCTTTTT AAGTTTTTGT 421 TCTGTTGAAT AAAAGGTGAT TTTGTAACAT ATTGTTTATT CAGAAACATG CTGCATTATT 481 TTACCTCCTG TATTTAAAGC ATTTTTTGGT CNNNNAAAAN AAAAAAAAAN AAAAAAAAAA 541 AAAAA Predicted gene structure (within gDNA segment 88282 to 86097): Exon 1 87557 87047 ( 511 n); cDNA 1 511 ( 511 n); score: 0.993 PPA cDNA 516 529 MATCH C04HBa0127E11.1- SGN-E339460+ 0.993 511 0.938 C PGS_C04HBa0127E11.1-_SGN-E339460+ (87557 87047) Alignment (genomic DNA sequence = upper lines): GACTGCTGGA ATTCACACGC TTAAGCGGTT ACAAGGACAG GGAACATACG AA-CACTTGG 87499 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| || ||||||| GACTGCTGGA ATTC-CACGC TTAAGCGGTT ACAAGGACAG GGAACATACG AACCACTTGG 59 ACAAGATCAC CGCGGAACTT ACACAAGGAA TCTTGGATGC TGGAAAGAAG ACCGGTCATG 87439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGATCAC CGCGGAACTT ACACAAGGAA TCTTGGATGC TGGAAAGAAG ACCGGTCATG 119 CAATGTGTGG TGGCTCCATA AGGGGGATGT TTGGCTTCTT CTTCGCGGAT GGTCCCATCT 87379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGTGTGG TGGCTCCATA AGGGGGATGT TTGGCTTCTT CTTCGCGGAT GGTCCCATCT 179 ATAACTTTTC GGATGCAAAG AAGAGTGATA CAGAAAAATT TGGCAGATTC TATAGAGGGA 87319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACTTTTC GGATGCAAAG AAGAGTGATA CAGAAAAATT TGGCAGATTC TATAGAGGGA 239 TGCTGGAGGA AGGTGTTTAC TTTGCACCAT CACAGTTTGA GGCTGGATTT ACTAGCTTAG 87259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGGAGGA AGGTGTTTAC TTTGCACCAT CACAGTTTGA GGCTGGATTT ACTAGCTTAG 299 CACACACTCC AGAGGATATT CAAAGGACTG TAGCTGCAGC TGAAAAAGTT TTGAAGCAAA 87199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACACACTCC AGAGGATATT CAAAGGACTG TAGCTGCAGC TGAAAAAGTT TTGAAGCAAA 359 TTTAACCACT ATATTTCTTT TTGTATGCTA GATGGAGAGA TTTTCCTTTT TAAGTTTTTG 87139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAACCACT ATATTTCTTT TTGTATGCTA GATGGAGAGA TTTTCCTTTT TAAGTTTTTG 419 TTCTGTTGAA TAAAAGGTGA TTTTGTAACA TATTGTTTAT TCAGAAACAT GCTGCATTAT 87079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTTGAA TAAAAGGTGA TTTTGTAACA TATTGTTTAT TCAGAAACAT GCTGCATTAT 479 TTTACCTCCT GTATTTAAAG CATTTTTTGG TC 87047 |||||||||| |||||||||| |||||||||| || TTTACCTCCT GTATTTAAAG CATTTTTTGG TC 511 hqPGS_C04HBa0127E11.1-_SGN-E339460+ (87557 87047) ******************************************************************************** EST sequence 7 -strand 547 n (File: SGN-E548191-) 1 CGGTGGCTTG CCAGTAGGTG CTTACGGAGG AAGACGGGAT ATAATGGAGA TGGTAGCACC 61 TGCAGGACCA ATGTATCAAG CTGGCACCCT AAGTGGAAAC CCATTGGCCA TGACTGCTGG 121 AATTCACACG CTTAAGCGGT TACAAGGACA GGGAACATAC GAACACTTGG ACAAGATCAC 181 CGCGGAACTT ACACAAGGAA TCTTGGATGC TGGAAAGAAG ACCGGTCATG CAATGTGTGG 241 TGGCTCCATA AGGGGGATGT TTGGCTTCTT CTTCGCGGAT GGTCCCATCT ATAACTTTTC 301 GGATGCAAAG AAGAGTGATA CAGAAAAATT TGGCAGATTC TATAGAGGGA TGCTGGAGGA 361 AGGTGTTTAC TTTGCACCAT CACAGTTTGA GGCTGGATTT ACTAGCTTAG CACACACTCC 421 AGAGGATATT CAAAGGACTG TAGCTGCAGC TGAAAAAGTT TTGAAGCAAA TTTAACCACT 481 ATATTTCTTT TTGTATGCTA GATGGAGAGA TTTTCCTTTT TAAGTTTTGG TAAAGTTGAA 541 TAAAAGG Predicted gene structure (within gDNA segment 88278 to 86351): Exon 1 87668 87122 ( 547 n); cDNA 1 547 ( 547 n); score: 0.993 MATCH C04HBa0127E11.1- SGN-E548191- 0.993 547 1.000 C PGS_C04HBa0127E11.1-_SGN-E548191- (87668 87122) Alignment (genomic DNA sequence = upper lines): CGGTGGCTTG CCAGTAGGTG CTTACGGAGG AAGACGGGAT ATAATGGAGA TGGTAGCACC 87609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGGCTTG CCAGTAGGTG CTTACGGAGG AAGACGGGAT ATAATGGAGA TGGTAGCACC 60 TGCAGGACCA ATGTATCAAG CTGGCACCCT AAGTGGAAAC CCATTGGCCA TGACTGCTGG 87549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGGACCA ATGTATCAAG CTGGCACCCT AAGTGGAAAC CCATTGGCCA TGACTGCTGG 120 AATTCACACG CTTAAGCGGT TACAAGGACA GGGAACATAC GAACACTTGG ACAAGATCAC 87489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCACACG CTTAAGCGGT TACAAGGACA GGGAACATAC GAACACTTGG ACAAGATCAC 180 CGCGGAACTT ACACAAGGAA TCTTGGATGC TGGAAAGAAG ACCGGTCATG CAATGTGTGG 87429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGGAACTT ACACAAGGAA TCTTGGATGC TGGAAAGAAG ACCGGTCATG CAATGTGTGG 240 TGGCTCCATA AGGGGGATGT TTGGCTTCTT CTTCGCGGAT GGTCCCATCT ATAACTTTTC 87369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTCCATA AGGGGGATGT TTGGCTTCTT CTTCGCGGAT GGTCCCATCT ATAACTTTTC 300 GGATGCAAAG AAGAGTGATA CAGAAAAATT TGGCAGATTC TATAGAGGGA TGCTGGAGGA 87309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGCAAAG AAGAGTGATA CAGAAAAATT TGGCAGATTC TATAGAGGGA TGCTGGAGGA 360 AGGTGTTTAC TTTGCACCAT CACAGTTTGA GGCTGGATTT ACTAGCTTAG CACACACTCC 87249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGTTTAC TTTGCACCAT CACAGTTTGA GGCTGGATTT ACTAGCTTAG CACACACTCC 420 AGAGGATATT CAAAGGACTG TAGCTGCAGC TGAAAAAGTT TTGAAGCAAA TTTAACCACT 87189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGATATT CAAAGGACTG TAGCTGCAGC TGAAAAAGTT TTGAAGCAAA TTTAACCACT 480 ATATTTCTTT TTGTATGCTA GATGGAGAGA TTTTCCTTTT TAAGTTTTTG TTCTGTTGAA 87129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | | |||||| ATATTTCTTT TTGTATGCTA GATGGAGAGA TTTTCCTTTT TAAGTTTTGG TAAAGTTGAA 540 TAAAAGG 87122 ||||||| TAAAAGG 547 hqPGS_C04HBa0127E11.1-_SGN-E548191- (87668 87122) ******************************************************************************** EST sequence 102 +strand 430 n (File: SGN-E318948+) 1 TCTGAAGAAG CTTTCAGCAA ATCCAAGGAG TTGATGCCAG GAGGTGTAAA TTCCCCTGTC 61 CGTGCTTTCA AGTCAGTTGG CGGACAACCT ATCATTATTG ACTCCGTGAA GGGCTCTCGT 121 ATGCGGGACA TAGATGGTAA CGAGTACATT GACTATGTCG GATCATGGGG ACCAGCTATA 181 ATTGGTCATG CGGATGATGA GGTGCTAGCA GCATTGGCTG AAACAATGAA GAAAGGAACG 241 AGTTTCGGTG CTCCATGTCT CCTTGAAAAT ACACTGGCAG AGATGGTTAT TTCAGCTGTT 301 CCAAGCATAG AAATGGTTCG ATTTGTCAAC TCTGGTACAG AAGCATGTAT GGGAGTACTA 361 CGGCTGGCTC GTGCTTTCAC TTGCCGTCCT AAGATCATCA AATTCGAGGG TTGTTACCAT 421 GGTCATGCTG Predicted gene structure (within gDNA segment 90059 to 87423): Exon 1 89207 89034 ( 174 n); cDNA 28 201 ( 174 n); score: 1.000 Intron 1 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 88261 88033 ( 229 n); cDNA 202 430 ( 229 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E318948+ 1.000 403 0.937 C PGS_C04HBa0127E11.1-_SGN-E318948+ (89207 89034,88261 88033) Alignment (genomic DNA sequence = upper lines): GAGTTGATGC CAGGAGGTGT AAATTCCCCT GTCCGTGCTT TCAAGTCAGT TGGCGGACAA 89148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGATGC CAGGAGGTGT AAATTCCCCT GTCCGTGCTT TCAAGTCAGT TGGCGGACAA 87 CCTATCATTA TTGACTCCGT GAAGGGCTCT CGTATGCGGG ACATAGATGG TAACGAGTAC 89088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATCATTA TTGACTCCGT GAAGGGCTCT CGTATGCGGG ACATAGATGG TAACGAGTAC 147 ATTGACTATG TCGGATCATG GGGACCAGCT ATAATTGGTC ATGCGGATGA TGAGGTTTAG 89028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATTGACTATG TCGGATCATG GGGACCAGCT ATAATTGGTC ATGCGGATGA TGAG...... 201 TTCTCTACTC TCAACTCTAT GTTAAGCTTG AAATTTCATT AGTCACTGTG CATTTATTTG 88968 .......... .......... .......... .......... .......... .......... 201 GCCTGGCTTG TTAGTAATAA GTTATTACTG CATCTACTTG CTTTGTATTT GGTAACATGT 88908 .......... .......... .......... .......... .......... .......... 201 TTTAGAAACT CCGTCTTAAA GCTGCTTCTT GTCTTTGCTC TCATTACAGG TTCGGTAAGT 88848 .......... .......... .......... .......... .......... .......... 201 TTTGTATTTT GGAAGAACCA TTGAATTACT TTGGCCTTAA ATGACTATTT ATGACTACGA 88788 .......... .......... .......... .......... .......... .......... 201 AGAACATATG GTTTAAGTTT TTAATCTTAA CCTGAGACCT CATGGTGCTT GACCCATTTA 88728 .......... .......... .......... .......... .......... .......... 201 TTGACCGCTA GGCCACACCC TTGGGTGCTT CTTTTGTTCT TTTTCTTAAA TAGAAATTGG 88668 .......... .......... .......... .......... .......... .......... 201 TATTTGACGT CCATCTTGTA GACGGTTCCT GTGATAGTGT ATAAATCAGT ATTATTAAAA 88608 .......... .......... .......... .......... .......... .......... 201 GTTGACTGAT GAGCATTTCT TAACTGGGAA CGATTTGGTT GGAGGTTGAG TGAACTGTGT 88548 .......... .......... .......... .......... .......... .......... 201 AGGTTATTGG GTGGATGAAG TGAAAACTCA AGTAGAACAT GTCTACAAGT GGATTCTCTT 88488 .......... .......... .......... .......... .......... .......... 201 GAGTTCAGCT TTAAGAACTA TTGCGCAAGA CACCTCAAAA TCTTCTATGC CCCTCTGTCT 88428 .......... .......... .......... .......... .......... .......... 201 TATTACACTG TACTATGGAA ACATAGTTGA TTAAAAGTGT CAGTACTGTA GGTGGGGAGA 88368 .......... .......... .......... .......... .......... .......... 201 GTCCTTTTTG GCATGAAAGG TTTAGGTACG AACAAGAGAG GGAAAGTTTT TAATGCTTTT 88308 .......... .......... .......... .......... .......... .......... 201 TCCATTGTTT TTGAGGCAAT AATCTTGGTA TGACCTTTCC CTGCAGGTGC TAGCAGCATT 88248 |||| |||||||||| .......... .......... .......... .......... ......GTGC TAGCAGCATT 215 GGCTGAAACA ATGAAGAAAG GAACGAGTTT CGGTGCTCCA TGTCTCCTTG AAAATACACT 88188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGAAACA ATGAAGAAAG GAACGAGTTT CGGTGCTCCA TGTCTCCTTG AAAATACACT 275 GGCAGAGATG GTTATTTCAG CTGTTCCAAG CATAGAAATG GTTCGATTTG TCAACTCTGG 88128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGAGATG GTTATTTCAG CTGTTCCAAG CATAGAAATG GTTCGATTTG TCAACTCTGG 335 TACAGAAGCA TGTATGGGAG TACTACGGCT GGCTCGTGCT TTCACTTGCC GTCCTAAGAT 88068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGAAGCA TGTATGGGAG TACTACGGCT GGCTCGTGCT TTCACTTGCC GTCCTAAGAT 395 CATCAAATTC GAGGGTTGTT ACCATGGTCA TGCTG 88033 |||||||||| |||||||||| |||||||||| ||||| CATCAAATTC GAGGGTTGTT ACCATGGTCA TGCTG 430 hqPGS_C04HBa0127E11.1-_SGN-E318948+ (89207 89034,88261 88033) ******************************************************************************** EST sequence 118 +strand 577 n (File: SGN-E267421+) 1 TGCTGTAAAT GGTGTAGGAC TTTCATGGCC ATCAAAATTG ACCAAAAATC AAACACCCAA 61 ATGGGGTTTT TCTCCATCTC ACCGTCGATG CAACCCATCT TCTTCTTCTT CTTCTGCAAC 121 CATTAGAATG ACAGCCTCAG TTGATGAAAA GAAGAAAACG TTCACACTTG AGAAGTCTGA 181 AGAAGCTTTC AGCAAAGCCA AGGAGTTGAT GCCAGGAGGT GTAAATTCCC CTGTCCGTGC 241 TTTCAAGTCA GTTGGCGGAC AACCTATCAT TATTGACTCC GTGAAGGGCT CTCGTATGCG 301 GGACATAGAT GGTAACGAGT ACATTGACTA TGTCGGATCA TGGGGACCAG CTATAATTGG 361 TCATGCGGAT GATGAGGTGC TAGCAGCATT GGCTGAAACA ATGAAGAAAG GAACGAGTTT 421 CGGTGCTCCA TGTCTCCTTG AAAATACACT GGCAGAGATG GTTATTTCAG CTGTTCCAAG 481 CATAGAAATG GTTCGATTTG TCAACTCTGG TACAGAAGCA TGTATGGGAG TACTACGGCT 541 GGCTCGTGCT TTCACTTGCC GTCCTAAGAT CATCAAA Predicted gene structure (within gDNA segment 91375 to 87451): Exon 1 90775 90574 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 203 376 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 88061 ( 201 n); cDNA 377 577 ( 201 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E267421+ 1.000 577 1.000 C PGS_C04HBa0127E11.1-_SGN-E267421+ (90775 90574,89207 89034,88261 88061) Alignment (genomic DNA sequence = upper lines): TGCTGTAAAT GGTGTAGGAC TTTCATGGCC ATCAAAATTG ACCAAAAATC AAACACCCAA 90716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTAAAT GGTGTAGGAC TTTCATGGCC ATCAAAATTG ACCAAAAATC AAACACCCAA 60 ATGGGGTTTT TCTCCATCTC ACCGTCGATG CAACCCATCT TCTTCTTCTT CTTCTGCAAC 90656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGGTTTT TCTCCATCTC ACCGTCGATG CAACCCATCT TCTTCTTCTT CTTCTGCAAC 120 CATTAGAATG ACAGCCTCAG TTGATGAAAA GAAGAAAACG TTCACACTTG AGAAGTCTGA 90596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTAGAATG ACAGCCTCAG TTGATGAAAA GAAGAAAACG TTCACACTTG AGAAGTCTGA 180 AGAAGCTTTC AGCAAAGCCA AGGTAATCAA AATTCAGTTT TTTTTTTTTT TTTTGGCTTC 90536 |||||||||| |||||||||| || AGAAGCTTTC AGCAAAGCCA AG........ .......... .......... .......... 202 ATGTTCATAC AATTCAATTT GGTGATGTTA TTCAGTACTC ATTAGACAAA AGTAAGGTTC 90476 .......... .......... .......... .......... .......... .......... 202 AAAAATCCAT AGACTCAAAA TCCTGGATCC ACCTCATCTT CTAGATAAGG TGGTGATAAT 90416 .......... .......... .......... .......... .......... .......... 202 ATTCAAGATT ATGGATATTG TTCAGTGTTT GTTCTTTGAT TTGAAGTGTA TTGGTCAAGA 90356 .......... .......... .......... .......... .......... .......... 202 TTTGATTTTT CATGCTAATA TTGCTGGTAA AATTGGAGGG GGTTGTCATG TGACCAGGAG 90296 .......... .......... .......... .......... .......... .......... 202 GTTATGGGTT CGAGCTGTAG GTACAGCCTT TTGCAGAAAT GCAGGTTAAG GCTGCATACT 90236 .......... .......... .......... .......... .......... .......... 202 ATAGACCCTT GTGGTCCGGC CCTTCCACCC CAAGCATAGT GGGAGCTTAA AATTGCTAGC 90176 .......... .......... .......... .......... .......... .......... 202 TTTAAGATAT TTGGGTTGGA TGAAGAGAAG AAAAAGGATA TGTTGATTTG ATAAAGTTGG 90116 .......... .......... .......... .......... .......... .......... 202 TGTTAGGTGT ACAAACAAAG TCTTAGGCTC TGAGCTGAAA AGAAAGTAAA AGACTTTGTA 90056 .......... .......... .......... .......... .......... .......... 202 ATGATATTGT TAATGGTGTG AGGCTTTTTT TGGAGAAAAC CGTGTGGATT TGGTTTTAGT 89996 .......... .......... .......... .......... .......... .......... 202 CCAAAGTGGA CAATACTGCA CCATGTTTAA AGTATCTTTG GGTTGTTTTA GCCTAACAGT 89936 .......... .......... .......... .......... .......... .......... 202 TGGTTCACCT GCCATTTTGG CATCTGCTGA TGAATTGATG TATAACCAGT GCTCTCTGAT 89876 .......... .......... .......... .......... .......... .......... 202 CTAACATACA GTCTAGTTGT CCTCCCATAT AAGTTAGTAT AGCTTAACTG TGATCTATTT 89816 .......... .......... .......... .......... .......... .......... 202 GTGACTTTAT GAGAACCTTG AGTATGTTTT AGATGTTGGT TGTGCTCAAA AGGCGTAATT 89756 .......... .......... .......... .......... .......... .......... 202 TTTATCACTG TTTAAATTTC ATGAATATCC GAGGTGGTTT GACTACAAAG AGGAGATATA 89696 .......... .......... .......... .......... .......... .......... 202 TTGATGGATC TGATAATGTA GCACAATTTC TGCAGCAAAA TATGTTTGTT TGCTTTAGTT 89636 .......... .......... .......... .......... .......... .......... 202 GGTTCTGTTT CCCTTTATTT ATTCTTTTGT TCTTGTGTAT CTTCTGATGT GACCTACTGA 89576 .......... .......... .......... .......... .......... .......... 202 GATTGGAACC TATGAGGGGG AAATGCTAAA CCCTATCACA TTTTCTAGAT GGGGTAAAAG 89516 .......... .......... .......... .......... .......... .......... 202 GTTAGAAAAA TGGCGCTTGA GGAAGAACAA ATTGAACAAC ATTTCGTCCT TAGTTGAAAA 89456 .......... .......... .......... .......... .......... .......... 202 GGGACTAACA CTTTGAACCT GAAAATACAG TTCAACTAAT TTTTCAGTTA ATTGGTGTAA 89396 .......... .......... .......... .......... .......... .......... 202 GCCTTCAATC TACAAAGGTA CACTTGATTC ATGTTATTCT TCTTGTGTTG TGCTCAAAAT 89336 .......... .......... .......... .......... .......... .......... 202 CTCTATACAT TAGTATCTTG CAGCAGAATA CTCCCGAAAG CAAAGAGGAG GAAAGATTCA 89276 .......... .......... .......... .......... .......... .......... 202 ATCAATTTTA TTAATCCTTA GTCCCTACAA GTTCTTTCAT TGATTTCATC GTGTTTTACT 89216 .......... .......... .......... .......... .......... .......... 202 GTTGGTAGGA GTTGATGCCA GGAGGTGTAA ATTCCCCTGT CCGTGCTTTC AAGTCAGTTG 89156 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA GTTGATGCCA GGAGGTGTAA ATTCCCCTGT CCGTGCTTTC AAGTCAGTTG 254 GCGGACAACC TATCATTATT GACTCCGTGA AGGGCTCTCG TATGCGGGAC ATAGATGGTA 89096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGACAACC TATCATTATT GACTCCGTGA AGGGCTCTCG TATGCGGGAC ATAGATGGTA 314 ACGAGTACAT TGACTATGTC GGATCATGGG GACCAGCTAT AATTGGTCAT GCGGATGATG 89036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGTACAT TGACTATGTC GGATCATGGG GACCAGCTAT AATTGGTCAT GCGGATGATG 374 AGGTTTAGTT CTCTACTCTC AACTCTATGT TAAGCTTGAA ATTTCATTAG TCACTGTGCA 88976 || AG........ .......... .......... .......... .......... .......... 376 TTTATTTGGC CTGGCTTGTT AGTAATAAGT TATTACTGCA TCTACTTGCT TTGTATTTGG 88916 .......... .......... .......... .......... .......... .......... 376 TAACATGTTT TAGAAACTCC GTCTTAAAGC TGCTTCTTGT CTTTGCTCTC ATTACAGGTT 88856 .......... .......... .......... .......... .......... .......... 376 CGGTAAGTTT TGTATTTTGG AAGAACCATT GAATTACTTT GGCCTTAAAT GACTATTTAT 88796 .......... .......... .......... .......... .......... .......... 376 GACTACGAAG AACATATGGT TTAAGTTTTT AATCTTAACC TGAGACCTCA TGGTGCTTGA 88736 .......... .......... .......... .......... .......... .......... 376 CCCATTTATT GACCGCTAGG CCACACCCTT GGGTGCTTCT TTTGTTCTTT TTCTTAAATA 88676 .......... .......... .......... .......... .......... .......... 376 GAAATTGGTA TTTGACGTCC ATCTTGTAGA CGGTTCCTGT GATAGTGTAT AAATCAGTAT 88616 .......... .......... .......... .......... .......... .......... 376 TATTAAAAGT TGACTGATGA GCATTTCTTA ACTGGGAACG ATTTGGTTGG AGGTTGAGTG 88556 .......... .......... .......... .......... .......... .......... 376 AACTGTGTAG GTTATTGGGT GGATGAAGTG AAAACTCAAG TAGAACATGT CTACAAGTGG 88496 .......... .......... .......... .......... .......... .......... 376 ATTCTCTTGA GTTCAGCTTT AAGAACTATT GCGCAAGACA CCTCAAAATC TTCTATGCCC 88436 .......... .......... .......... .......... .......... .......... 376 CTCTGTCTTA TTACACTGTA CTATGGAAAC ATAGTTGATT AAAAGTGTCA GTACTGTAGG 88376 .......... .......... .......... .......... .......... .......... 376 TGGGGAGAGT CCTTTTTGGC ATGAAAGGTT TAGGTACGAA CAAGAGAGGG AAAGTTTTTA 88316 .......... .......... .......... .......... .......... .......... 376 ATGCTTTTTC CATTGTTTTT GAGGCAATAA TCTTGGTATG ACCTTTCCCT GCAGGTGCTA 88256 |||||| .......... .......... .......... .......... .......... ....GTGCTA 382 GCAGCATTGG CTGAAACAAT GAAGAAAGGA ACGAGTTTCG GTGCTCCATG TCTCCTTGAA 88196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCATTGG CTGAAACAAT GAAGAAAGGA ACGAGTTTCG GTGCTCCATG TCTCCTTGAA 442 AATACACTGG CAGAGATGGT TATTTCAGCT GTTCCAAGCA TAGAAATGGT TCGATTTGTC 88136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACACTGG CAGAGATGGT TATTTCAGCT GTTCCAAGCA TAGAAATGGT TCGATTTGTC 502 AACTCTGGTA CAGAAGCATG TATGGGAGTA CTACGGCTGG CTCGTGCTTT CACTTGCCGT 88076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCTGGTA CAGAAGCATG TATGGGAGTA CTACGGCTGG CTCGTGCTTT CACTTGCCGT 562 CCTAAGATCA TCAAA 88061 |||||||||| ||||| CCTAAGATCA TCAAA 577 hqPGS_C04HBa0127E11.1-_SGN-E267421+ (90775 90574,89207 89034,88261 88061) ******************************************************************************** EST sequence 63 +strand 594 n (File: SGN-E200164+) 1 GCACGAGGAA GAGTTGGTAA CAATGGCTGC TGTAAATGGT GTAGGACTTT CATGGCCATC 61 AAAATTGACC AAAAATCAAA CACCCAAATG GGGTTTTTCT CCATCTCACC GTCGATGCAA 121 CCCATCTTCT TCTTCTTCTT CTGCAACCAT TAGAATGACA GCCTCAGTTG ATGAAAAGAA 181 GAAAACGTTC ACACTTGAGA AGTCTGAAGA AGCTTTCAGC AAAGCCAAGG AGTTGATGCC 241 AGGAGGTGTA AATTCCCCTG TCCGTGCTTT CAAGTCAGTT GGCGGACAAC CTATCATTAT 301 TGACTCCGTG AAGGGCTCTC GTATGCGGGA CATAGATGGT AACGAGTACA TTGACTATGT 361 CGGATCATGG GGACCAGCTA TAATTGGTCA TGCGGATGAT GAGGTGCTAG CAGCATTGGC 421 TGAAACAATG AAGAAAGGAA CGAGTTTCGG TGCTCCATGT CTCCTTGAAA ATACACTGGC 481 AGAGATGGTT ATTTCAGCTG TTCCAAGCAT AGAAATGGTT CGATTTGTCA ACTCTGGTAC 541 AGAAGCATGT ATGGGAGTAC TACGGCTGGC TCGTGCTTTC ACTTGCCGTC CTAA Predicted gene structure (within gDNA segment 91438 to 87461): Exon 1 90798 90574 ( 225 n); cDNA 5 229 ( 225 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 230 403 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 88071 ( 191 n); cDNA 404 594 ( 191 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E200164+ 1.000 590 0.993 C PGS_C04HBa0127E11.1-_SGN-E200164+ (90798 90574,89207 89034,88261 88071) Alignment (genomic DNA sequence = upper lines): GAGGAAGAGT TGGTAACAAT GGCTGCTGTA AATGGTGTAG GACTTTCATG GCCATCAAAA 90739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAGAGT TGGTAACAAT GGCTGCTGTA AATGGTGTAG GACTTTCATG GCCATCAAAA 64 TTGACCAAAA ATCAAACACC CAAATGGGGT TTTTCTCCAT CTCACCGTCG ATGCAACCCA 90679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACCAAAA ATCAAACACC CAAATGGGGT TTTTCTCCAT CTCACCGTCG ATGCAACCCA 124 TCTTCTTCTT CTTCTTCTGC AACCATTAGA ATGACAGCCT CAGTTGATGA AAAGAAGAAA 90619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCTT CTTCTTCTGC AACCATTAGA ATGACAGCCT CAGTTGATGA AAAGAAGAAA 184 ACGTTCACAC TTGAGAAGTC TGAAGAAGCT TTCAGCAAAG CCAAGGTAAT CAAAATTCAG 90559 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ACGTTCACAC TTGAGAAGTC TGAAGAAGCT TTCAGCAAAG CCAAG..... .......... 229 TTTTTTTTTT TTTTTTTGGC TTCATGTTCA TACAATTCAA TTTGGTGATG TTATTCAGTA 90499 .......... .......... .......... .......... .......... .......... 229 CTCATTAGAC AAAAGTAAGG TTCAAAAATC CATAGACTCA AAATCCTGGA TCCACCTCAT 90439 .......... .......... .......... .......... .......... .......... 229 CTTCTAGATA AGGTGGTGAT AATATTCAAG ATTATGGATA TTGTTCAGTG TTTGTTCTTT 90379 .......... .......... .......... .......... .......... .......... 229 GATTTGAAGT GTATTGGTCA AGATTTGATT TTTCATGCTA ATATTGCTGG TAAAATTGGA 90319 .......... .......... .......... .......... .......... .......... 229 GGGGGTTGTC ATGTGACCAG GAGGTTATGG GTTCGAGCTG TAGGTACAGC CTTTTGCAGA 90259 .......... .......... .......... .......... .......... .......... 229 AATGCAGGTT AAGGCTGCAT ACTATAGACC CTTGTGGTCC GGCCCTTCCA CCCCAAGCAT 90199 .......... .......... .......... .......... .......... .......... 229 AGTGGGAGCT TAAAATTGCT AGCTTTAAGA TATTTGGGTT GGATGAAGAG AAGAAAAAGG 90139 .......... .......... .......... .......... .......... .......... 229 ATATGTTGAT TTGATAAAGT TGGTGTTAGG TGTACAAACA AAGTCTTAGG CTCTGAGCTG 90079 .......... .......... .......... .......... .......... .......... 229 AAAAGAAAGT AAAAGACTTT GTAATGATAT TGTTAATGGT GTGAGGCTTT TTTTGGAGAA 90019 .......... .......... .......... .......... .......... .......... 229 AACCGTGTGG ATTTGGTTTT AGTCCAAAGT GGACAATACT GCACCATGTT TAAAGTATCT 89959 .......... .......... .......... .......... .......... .......... 229 TTGGGTTGTT TTAGCCTAAC AGTTGGTTCA CCTGCCATTT TGGCATCTGC TGATGAATTG 89899 .......... .......... .......... .......... .......... .......... 229 ATGTATAACC AGTGCTCTCT GATCTAACAT ACAGTCTAGT TGTCCTCCCA TATAAGTTAG 89839 .......... .......... .......... .......... .......... .......... 229 TATAGCTTAA CTGTGATCTA TTTGTGACTT TATGAGAACC TTGAGTATGT TTTAGATGTT 89779 .......... .......... .......... .......... .......... .......... 229 GGTTGTGCTC AAAAGGCGTA ATTTTTATCA CTGTTTAAAT TTCATGAATA TCCGAGGTGG 89719 .......... .......... .......... .......... .......... .......... 229 TTTGACTACA AAGAGGAGAT ATATTGATGG ATCTGATAAT GTAGCACAAT TTCTGCAGCA 89659 .......... .......... .......... .......... .......... .......... 229 AAATATGTTT GTTTGCTTTA GTTGGTTCTG TTTCCCTTTA TTTATTCTTT TGTTCTTGTG 89599 .......... .......... .......... .......... .......... .......... 229 TATCTTCTGA TGTGACCTAC TGAGATTGGA ACCTATGAGG GGGAAATGCT AAACCCTATC 89539 .......... .......... .......... .......... .......... .......... 229 ACATTTTCTA GATGGGGTAA AAGGTTAGAA AAATGGCGCT TGAGGAAGAA CAAATTGAAC 89479 .......... .......... .......... .......... .......... .......... 229 AACATTTCGT CCTTAGTTGA AAAGGGACTA ACACTTTGAA CCTGAAAATA CAGTTCAACT 89419 .......... .......... .......... .......... .......... .......... 229 AATTTTTCAG TTAATTGGTG TAAGCCTTCA ATCTACAAAG GTACACTTGA TTCATGTTAT 89359 .......... .......... .......... .......... .......... .......... 229 TCTTCTTGTG TTGTGCTCAA AATCTCTATA CATTAGTATC TTGCAGCAGA ATACTCCCGA 89299 .......... .......... .......... .......... .......... .......... 229 AAGCAAAGAG GAGGAAAGAT TCAATCAATT TTATTAATCC TTAGTCCCTA CAAGTTCTTT 89239 .......... .......... .......... .......... .......... .......... 229 CATTGATTTC ATCGTGTTTT ACTGTTGGTA GGAGTTGATG CCAGGAGGTG TAAATTCCCC 89179 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GAGTTGATG CCAGGAGGTG TAAATTCCCC 258 TGTCCGTGCT TTCAAGTCAG TTGGCGGACA ACCTATCATT ATTGACTCCG TGAAGGGCTC 89119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCGTGCT TTCAAGTCAG TTGGCGGACA ACCTATCATT ATTGACTCCG TGAAGGGCTC 318 TCGTATGCGG GACATAGATG GTAACGAGTA CATTGACTAT GTCGGATCAT GGGGACCAGC 89059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTATGCGG GACATAGATG GTAACGAGTA CATTGACTAT GTCGGATCAT GGGGACCAGC 378 TATAATTGGT CATGCGGATG ATGAGGTTTA GTTCTCTACT CTCAACTCTA TGTTAAGCTT 88999 |||||||||| |||||||||| ||||| TATAATTGGT CATGCGGATG ATGAG..... .......... .......... .......... 403 GAAATTTCAT TAGTCACTGT GCATTTATTT GGCCTGGCTT GTTAGTAATA AGTTATTACT 88939 .......... .......... .......... .......... .......... .......... 403 GCATCTACTT GCTTTGTATT TGGTAACATG TTTTAGAAAC TCCGTCTTAA AGCTGCTTCT 88879 .......... .......... .......... .......... .......... .......... 403 TGTCTTTGCT CTCATTACAG GTTCGGTAAG TTTTGTATTT TGGAAGAACC ATTGAATTAC 88819 .......... .......... .......... .......... .......... .......... 403 TTTGGCCTTA AATGACTATT TATGACTACG AAGAACATAT GGTTTAAGTT TTTAATCTTA 88759 .......... .......... .......... .......... .......... .......... 403 ACCTGAGACC TCATGGTGCT TGACCCATTT ATTGACCGCT AGGCCACACC CTTGGGTGCT 88699 .......... .......... .......... .......... .......... .......... 403 TCTTTTGTTC TTTTTCTTAA ATAGAAATTG GTATTTGACG TCCATCTTGT AGACGGTTCC 88639 .......... .......... .......... .......... .......... .......... 403 TGTGATAGTG TATAAATCAG TATTATTAAA AGTTGACTGA TGAGCATTTC TTAACTGGGA 88579 .......... .......... .......... .......... .......... .......... 403 ACGATTTGGT TGGAGGTTGA GTGAACTGTG TAGGTTATTG GGTGGATGAA GTGAAAACTC 88519 .......... .......... .......... .......... .......... .......... 403 AAGTAGAACA TGTCTACAAG TGGATTCTCT TGAGTTCAGC TTTAAGAACT ATTGCGCAAG 88459 .......... .......... .......... .......... .......... .......... 403 ACACCTCAAA ATCTTCTATG CCCCTCTGTC TTATTACACT GTACTATGGA AACATAGTTG 88399 .......... .......... .......... .......... .......... .......... 403 ATTAAAAGTG TCAGTACTGT AGGTGGGGAG AGTCCTTTTT GGCATGAAAG GTTTAGGTAC 88339 .......... .......... .......... .......... .......... .......... 403 GAACAAGAGA GGGAAAGTTT TTAATGCTTT TTCCATTGTT TTTGAGGCAA TAATCTTGGT 88279 .......... .......... .......... .......... .......... .......... 403 ATGACCTTTC CCTGCAGGTG CTAGCAGCAT TGGCTGAAAC AATGAAGAAA GGAACGAGTT 88219 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GTG CTAGCAGCAT TGGCTGAAAC AATGAAGAAA GGAACGAGTT 446 TCGGTGCTCC ATGTCTCCTT GAAAATACAC TGGCAGAGAT GGTTATTTCA GCTGTTCCAA 88159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGTGCTCC ATGTCTCCTT GAAAATACAC TGGCAGAGAT GGTTATTTCA GCTGTTCCAA 506 GCATAGAAAT GGTTCGATTT GTCAACTCTG GTACAGAAGC ATGTATGGGA GTACTACGGC 88099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATAGAAAT GGTTCGATTT GTCAACTCTG GTACAGAAGC ATGTATGGGA GTACTACGGC 566 TGGCTCGTGC TTTCACTTGC CGTCCTAA 88071 |||||||||| |||||||||| |||||||| TGGCTCGTGC TTTCACTTGC CGTCCTAA 594 hqPGS_C04HBa0127E11.1-_SGN-E200164+ (90798 90574,89207 89034,88261 88071) ******************************************************************************** EST sequence 136 +strand 607 n (File: SGN-E343611+) 1 GAATACTCAG AGAGAGAAGA GGAAGAGTTG GTAACAATGG CTGCTGTAAA TGGTGTAGGA 61 CTTTCATGGC CATCAAAATT GACCAAAAAT CAAACACCCA AATGGGGTTT TTCTCCATCT 121 CACCGTCGAT GCAACCCATC TTCTTCTTCT TCTTCTGCAA CCATTAGAAT GACAGCCTCA 181 GTTGATGAAA AGAAGAAAAC GTTCACACTT GAGAAGTCTG AAGAAGCTTT CAGCAAAGCC 241 AAGGAGTTGA TGCCAGGAGG TGTAAATTCC CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA 301 CAACCTATCA TTATTGACTC CGTGAAGGGC TCTCGTATGC GGGACATAGA TGGTAACGAG 361 TACATTGACT ATGTCGGATC ATGGGGACCA GCTATAATTG GTCATGCGGA TGATGAGGTG 421 CTAGCAGCAT TGGCTGAAAC AATGAAGAAA GGAACGAGTT TCGGTGCTCC ATGTCTCCTT 481 GAAAATACAC TGGCAGAGAT GGTTATTTCA GCTGTTCCAA GCATAGAAAT GGTTCGATTT 541 GTCAACTCTG GTACAGAAGC ATGTATGGGA GTACTACGGC TGGCTCGTGC TTTCACTTGC 601 CGTCCTA Predicted gene structure (within gDNA segment 91416 to 87462): Exon 1 90816 90574 ( 243 n); cDNA 1 243 ( 243 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 244 417 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 88072 ( 190 n); cDNA 418 607 ( 190 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E343611+ 1.000 607 1.000 C PGS_C04HBa0127E11.1-_SGN-E343611+ (90816 90574,89207 89034,88261 88072) Alignment (genomic DNA sequence = upper lines): GAATACTCAG AGAGAGAAGA GGAAGAGTTG GTAACAATGG CTGCTGTAAA TGGTGTAGGA 90757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATACTCAG AGAGAGAAGA GGAAGAGTTG GTAACAATGG CTGCTGTAAA TGGTGTAGGA 60 CTTTCATGGC CATCAAAATT GACCAAAAAT CAAACACCCA AATGGGGTTT TTCTCCATCT 90697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCATGGC CATCAAAATT GACCAAAAAT CAAACACCCA AATGGGGTTT TTCTCCATCT 120 CACCGTCGAT GCAACCCATC TTCTTCTTCT TCTTCTGCAA CCATTAGAAT GACAGCCTCA 90637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGTCGAT GCAACCCATC TTCTTCTTCT TCTTCTGCAA CCATTAGAAT GACAGCCTCA 180 GTTGATGAAA AGAAGAAAAC GTTCACACTT GAGAAGTCTG AAGAAGCTTT CAGCAAAGCC 90577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATGAAA AGAAGAAAAC GTTCACACTT GAGAAGTCTG AAGAAGCTTT CAGCAAAGCC 240 AAGGTAATCA AAATTCAGTT TTTTTTTTTT TTTTTGGCTT CATGTTCATA CAATTCAATT 90517 ||| AAG....... .......... .......... .......... .......... .......... 243 TGGTGATGTT ATTCAGTACT CATTAGACAA AAGTAAGGTT CAAAAATCCA TAGACTCAAA 90457 .......... .......... .......... .......... .......... .......... 243 ATCCTGGATC CACCTCATCT TCTAGATAAG GTGGTGATAA TATTCAAGAT TATGGATATT 90397 .......... .......... .......... .......... .......... .......... 243 GTTCAGTGTT TGTTCTTTGA TTTGAAGTGT ATTGGTCAAG ATTTGATTTT TCATGCTAAT 90337 .......... .......... .......... .......... .......... .......... 243 ATTGCTGGTA AAATTGGAGG GGGTTGTCAT GTGACCAGGA GGTTATGGGT TCGAGCTGTA 90277 .......... .......... .......... .......... .......... .......... 243 GGTACAGCCT TTTGCAGAAA TGCAGGTTAA GGCTGCATAC TATAGACCCT TGTGGTCCGG 90217 .......... .......... .......... .......... .......... .......... 243 CCCTTCCACC CCAAGCATAG TGGGAGCTTA AAATTGCTAG CTTTAAGATA TTTGGGTTGG 90157 .......... .......... .......... .......... .......... .......... 243 ATGAAGAGAA GAAAAAGGAT ATGTTGATTT GATAAAGTTG GTGTTAGGTG TACAAACAAA 90097 .......... .......... .......... .......... .......... .......... 243 GTCTTAGGCT CTGAGCTGAA AAGAAAGTAA AAGACTTTGT AATGATATTG TTAATGGTGT 90037 .......... .......... .......... .......... .......... .......... 243 GAGGCTTTTT TTGGAGAAAA CCGTGTGGAT TTGGTTTTAG TCCAAAGTGG ACAATACTGC 89977 .......... .......... .......... .......... .......... .......... 243 ACCATGTTTA AAGTATCTTT GGGTTGTTTT AGCCTAACAG TTGGTTCACC TGCCATTTTG 89917 .......... .......... .......... .......... .......... .......... 243 GCATCTGCTG ATGAATTGAT GTATAACCAG TGCTCTCTGA TCTAACATAC AGTCTAGTTG 89857 .......... .......... .......... .......... .......... .......... 243 TCCTCCCATA TAAGTTAGTA TAGCTTAACT GTGATCTATT TGTGACTTTA TGAGAACCTT 89797 .......... .......... .......... .......... .......... .......... 243 GAGTATGTTT TAGATGTTGG TTGTGCTCAA AAGGCGTAAT TTTTATCACT GTTTAAATTT 89737 .......... .......... .......... .......... .......... .......... 243 CATGAATATC CGAGGTGGTT TGACTACAAA GAGGAGATAT ATTGATGGAT CTGATAATGT 89677 .......... .......... .......... .......... .......... .......... 243 AGCACAATTT CTGCAGCAAA ATATGTTTGT TTGCTTTAGT TGGTTCTGTT TCCCTTTATT 89617 .......... .......... .......... .......... .......... .......... 243 TATTCTTTTG TTCTTGTGTA TCTTCTGATG TGACCTACTG AGATTGGAAC CTATGAGGGG 89557 .......... .......... .......... .......... .......... .......... 243 GAAATGCTAA ACCCTATCAC ATTTTCTAGA TGGGGTAAAA GGTTAGAAAA ATGGCGCTTG 89497 .......... .......... .......... .......... .......... .......... 243 AGGAAGAACA AATTGAACAA CATTTCGTCC TTAGTTGAAA AGGGACTAAC ACTTTGAACC 89437 .......... .......... .......... .......... .......... .......... 243 TGAAAATACA GTTCAACTAA TTTTTCAGTT AATTGGTGTA AGCCTTCAAT CTACAAAGGT 89377 .......... .......... .......... .......... .......... .......... 243 ACACTTGATT CATGTTATTC TTCTTGTGTT GTGCTCAAAA TCTCTATACA TTAGTATCTT 89317 .......... .......... .......... .......... .......... .......... 243 GCAGCAGAAT ACTCCCGAAA GCAAAGAGGA GGAAAGATTC AATCAATTTT ATTAATCCTT 89257 .......... .......... .......... .......... .......... .......... 243 AGTCCCTACA AGTTCTTTCA TTGATTTCAT CGTGTTTTAC TGTTGGTAGG AGTTGATGCC 89197 | |||||||||| .......... .......... .......... .......... .........G AGTTGATGCC 254 AGGAGGTGTA AATTCCCCTG TCCGTGCTTT CAAGTCAGTT GGCGGACAAC CTATCATTAT 89137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGTGTA AATTCCCCTG TCCGTGCTTT CAAGTCAGTT GGCGGACAAC CTATCATTAT 314 TGACTCCGTG AAGGGCTCTC GTATGCGGGA CATAGATGGT AACGAGTACA TTGACTATGT 89077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTCCGTG AAGGGCTCTC GTATGCGGGA CATAGATGGT AACGAGTACA TTGACTATGT 374 CGGATCATGG GGACCAGCTA TAATTGGTCA TGCGGATGAT GAGGTTTAGT TCTCTACTCT 89017 |||||||||| |||||||||| |||||||||| |||||||||| ||| CGGATCATGG GGACCAGCTA TAATTGGTCA TGCGGATGAT GAG....... .......... 417 CAACTCTATG TTAAGCTTGA AATTTCATTA GTCACTGTGC ATTTATTTGG CCTGGCTTGT 88957 .......... .......... .......... .......... .......... .......... 417 TAGTAATAAG TTATTACTGC ATCTACTTGC TTTGTATTTG GTAACATGTT TTAGAAACTC 88897 .......... .......... .......... .......... .......... .......... 417 CGTCTTAAAG CTGCTTCTTG TCTTTGCTCT CATTACAGGT TCGGTAAGTT TTGTATTTTG 88837 .......... .......... .......... .......... .......... .......... 417 GAAGAACCAT TGAATTACTT TGGCCTTAAA TGACTATTTA TGACTACGAA GAACATATGG 88777 .......... .......... .......... .......... .......... .......... 417 TTTAAGTTTT TAATCTTAAC CTGAGACCTC ATGGTGCTTG ACCCATTTAT TGACCGCTAG 88717 .......... .......... .......... .......... .......... .......... 417 GCCACACCCT TGGGTGCTTC TTTTGTTCTT TTTCTTAAAT AGAAATTGGT ATTTGACGTC 88657 .......... .......... .......... .......... .......... .......... 417 CATCTTGTAG ACGGTTCCTG TGATAGTGTA TAAATCAGTA TTATTAAAAG TTGACTGATG 88597 .......... .......... .......... .......... .......... .......... 417 AGCATTTCTT AACTGGGAAC GATTTGGTTG GAGGTTGAGT GAACTGTGTA GGTTATTGGG 88537 .......... .......... .......... .......... .......... .......... 417 TGGATGAAGT GAAAACTCAA GTAGAACATG TCTACAAGTG GATTCTCTTG AGTTCAGCTT 88477 .......... .......... .......... .......... .......... .......... 417 TAAGAACTAT TGCGCAAGAC ACCTCAAAAT CTTCTATGCC CCTCTGTCTT ATTACACTGT 88417 .......... .......... .......... .......... .......... .......... 417 ACTATGGAAA CATAGTTGAT TAAAAGTGTC AGTACTGTAG GTGGGGAGAG TCCTTTTTGG 88357 .......... .......... .......... .......... .......... .......... 417 CATGAAAGGT TTAGGTACGA ACAAGAGAGG GAAAGTTTTT AATGCTTTTT CCATTGTTTT 88297 .......... .......... .......... .......... .......... .......... 417 TGAGGCAATA ATCTTGGTAT GACCTTTCCC TGCAGGTGCT AGCAGCATTG GCTGAAACAA 88237 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTGCT AGCAGCATTG GCTGAAACAA 442 TGAAGAAAGG AACGAGTTTC GGTGCTCCAT GTCTCCTTGA AAATACACTG GCAGAGATGG 88177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAAGG AACGAGTTTC GGTGCTCCAT GTCTCCTTGA AAATACACTG GCAGAGATGG 502 TTATTTCAGC TGTTCCAAGC ATAGAAATGG TTCGATTTGT CAACTCTGGT ACAGAAGCAT 88117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTTCAGC TGTTCCAAGC ATAGAAATGG TTCGATTTGT CAACTCTGGT ACAGAAGCAT 562 GTATGGGAGT ACTACGGCTG GCTCGTGCTT TCACTTGCCG TCCTA 88072 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTATGGGAGT ACTACGGCTG GCTCGTGCTT TCACTTGCCG TCCTA 607 hqPGS_C04HBa0127E11.1-_SGN-E343611+ (90816 90574,89207 89034,88261 88072) ******************************************************************************** EST sequence 59 +strand 443 n (File: SGN-E295005+) 1 TCTGCAACCA TTAGAATGAC AGCCTCAGTT GATGAAAAGA AGAAAACGTT CACACTTGAG 61 AAGTCTGAAG AAGCTTTCAG CAAAGCCAAG GAGTTGATGC CAGGAGGTGT AAATTCCCCT 121 GTCCGTGCTT TCAAGTCAGT TGGCGGACAA CCTATCATTA TTGACTCCGT GAAGGGCTCT 181 CGTATGCGGG ACATAGATGG TAACGAGTAC ATTGACTATG TCGGATCATG GGGACCAGCT 241 ATAATTGGTC ATGCGGATGA TGAGGTGCTA GCAGCATTGG CTGAAACAAT GAAGAAAGGA 301 ACGAGTTTCG GTGCTCCATG TCTCCTTGAA AATACACTGG CAGAGATGGT TATTTCAGCT 361 GTTCCAAGCA TAGAAATGGT TCGATTTGTC AACTCTGGTA CAGAAGCATG TATGGGAGTA 421 CTACGGCTGG CTCGTGCTTT CAC Predicted gene structure (within gDNA segment 91263 to 87473): Exon 1 90663 90574 ( 90 n); cDNA 1 90 ( 90 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 91 264 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 88083 ( 179 n); cDNA 265 443 ( 179 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E295005+ 1.000 443 1.000 C PGS_C04HBa0127E11.1-_SGN-E295005+ (90663 90574,89207 89034,88261 88083) Alignment (genomic DNA sequence = upper lines): TCTGCAACCA TTAGAATGAC AGCCTCAGTT GATGAAAAGA AGAAAACGTT CACACTTGAG 90604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCAACCA TTAGAATGAC AGCCTCAGTT GATGAAAAGA AGAAAACGTT CACACTTGAG 60 AAGTCTGAAG AAGCTTTCAG CAAAGCCAAG GTAATCAAAA TTCAGTTTTT TTTTTTTTTT 90544 |||||||||| |||||||||| |||||||||| AAGTCTGAAG AAGCTTTCAG CAAAGCCAAG .......... .......... .......... 90 TTGGCTTCAT GTTCATACAA TTCAATTTGG TGATGTTATT CAGTACTCAT TAGACAAAAG 90484 .......... .......... .......... .......... .......... .......... 90 TAAGGTTCAA AAATCCATAG ACTCAAAATC CTGGATCCAC CTCATCTTCT AGATAAGGTG 90424 .......... .......... .......... .......... .......... .......... 90 GTGATAATAT TCAAGATTAT GGATATTGTT CAGTGTTTGT TCTTTGATTT GAAGTGTATT 90364 .......... .......... .......... .......... .......... .......... 90 GGTCAAGATT TGATTTTTCA TGCTAATATT GCTGGTAAAA TTGGAGGGGG TTGTCATGTG 90304 .......... .......... .......... .......... .......... .......... 90 ACCAGGAGGT TATGGGTTCG AGCTGTAGGT ACAGCCTTTT GCAGAAATGC AGGTTAAGGC 90244 .......... .......... .......... .......... .......... .......... 90 TGCATACTAT AGACCCTTGT GGTCCGGCCC TTCCACCCCA AGCATAGTGG GAGCTTAAAA 90184 .......... .......... .......... .......... .......... .......... 90 TTGCTAGCTT TAAGATATTT GGGTTGGATG AAGAGAAGAA AAAGGATATG TTGATTTGAT 90124 .......... .......... .......... .......... .......... .......... 90 AAAGTTGGTG TTAGGTGTAC AAACAAAGTC TTAGGCTCTG AGCTGAAAAG AAAGTAAAAG 90064 .......... .......... .......... .......... .......... .......... 90 ACTTTGTAAT GATATTGTTA ATGGTGTGAG GCTTTTTTTG GAGAAAACCG TGTGGATTTG 90004 .......... .......... .......... .......... .......... .......... 90 GTTTTAGTCC AAAGTGGACA ATACTGCACC ATGTTTAAAG TATCTTTGGG TTGTTTTAGC 89944 .......... .......... .......... .......... .......... .......... 90 CTAACAGTTG GTTCACCTGC CATTTTGGCA TCTGCTGATG AATTGATGTA TAACCAGTGC 89884 .......... .......... .......... .......... .......... .......... 90 TCTCTGATCT AACATACAGT CTAGTTGTCC TCCCATATAA GTTAGTATAG CTTAACTGTG 89824 .......... .......... .......... .......... .......... .......... 90 ATCTATTTGT GACTTTATGA GAACCTTGAG TATGTTTTAG ATGTTGGTTG TGCTCAAAAG 89764 .......... .......... .......... .......... .......... .......... 90 GCGTAATTTT TATCACTGTT TAAATTTCAT GAATATCCGA GGTGGTTTGA CTACAAAGAG 89704 .......... .......... .......... .......... .......... .......... 90 GAGATATATT GATGGATCTG ATAATGTAGC ACAATTTCTG CAGCAAAATA TGTTTGTTTG 89644 .......... .......... .......... .......... .......... .......... 90 CTTTAGTTGG TTCTGTTTCC CTTTATTTAT TCTTTTGTTC TTGTGTATCT TCTGATGTGA 89584 .......... .......... .......... .......... .......... .......... 90 CCTACTGAGA TTGGAACCTA TGAGGGGGAA ATGCTAAACC CTATCACATT TTCTAGATGG 89524 .......... .......... .......... .......... .......... .......... 90 GGTAAAAGGT TAGAAAAATG GCGCTTGAGG AAGAACAAAT TGAACAACAT TTCGTCCTTA 89464 .......... .......... .......... .......... .......... .......... 90 GTTGAAAAGG GACTAACACT TTGAACCTGA AAATACAGTT CAACTAATTT TTCAGTTAAT 89404 .......... .......... .......... .......... .......... .......... 90 TGGTGTAAGC CTTCAATCTA CAAAGGTACA CTTGATTCAT GTTATTCTTC TTGTGTTGTG 89344 .......... .......... .......... .......... .......... .......... 90 CTCAAAATCT CTATACATTA GTATCTTGCA GCAGAATACT CCCGAAAGCA AAGAGGAGGA 89284 .......... .......... .......... .......... .......... .......... 90 AAGATTCAAT CAATTTTATT AATCCTTAGT CCCTACAAGT TCTTTCATTG ATTTCATCGT 89224 .......... .......... .......... .......... .......... .......... 90 GTTTTACTGT TGGTAGGAGT TGATGCCAGG AGGTGTAAAT TCCCCTGTCC GTGCTTTCAA 89164 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GAGT TGATGCCAGG AGGTGTAAAT TCCCCTGTCC GTGCTTTCAA 134 GTCAGTTGGC GGACAACCTA TCATTATTGA CTCCGTGAAG GGCTCTCGTA TGCGGGACAT 89104 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGTTGGC GGACAACCTA TCATTATTGA CTCCGTGAAG GGCTCTCGTA TGCGGGACAT 194 AGATGGTAAC GAGTACATTG ACTATGTCGG ATCATGGGGA CCAGCTATAA TTGGTCATGC 89044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGTAAC GAGTACATTG ACTATGTCGG ATCATGGGGA CCAGCTATAA TTGGTCATGC 254 GGATGATGAG GTTTAGTTCT CTACTCTCAA CTCTATGTTA AGCTTGAAAT TTCATTAGTC 88984 |||||||||| GGATGATGAG .......... .......... .......... .......... .......... 264 ACTGTGCATT TATTTGGCCT GGCTTGTTAG TAATAAGTTA TTACTGCATC TACTTGCTTT 88924 .......... .......... .......... .......... .......... .......... 264 GTATTTGGTA ACATGTTTTA GAAACTCCGT CTTAAAGCTG CTTCTTGTCT TTGCTCTCAT 88864 .......... .......... .......... .......... .......... .......... 264 TACAGGTTCG GTAAGTTTTG TATTTTGGAA GAACCATTGA ATTACTTTGG CCTTAAATGA 88804 .......... .......... .......... .......... .......... .......... 264 CTATTTATGA CTACGAAGAA CATATGGTTT AAGTTTTTAA TCTTAACCTG AGACCTCATG 88744 .......... .......... .......... .......... .......... .......... 264 GTGCTTGACC CATTTATTGA CCGCTAGGCC ACACCCTTGG GTGCTTCTTT TGTTCTTTTT 88684 .......... .......... .......... .......... .......... .......... 264 CTTAAATAGA AATTGGTATT TGACGTCCAT CTTGTAGACG GTTCCTGTGA TAGTGTATAA 88624 .......... .......... .......... .......... .......... .......... 264 ATCAGTATTA TTAAAAGTTG ACTGATGAGC ATTTCTTAAC TGGGAACGAT TTGGTTGGAG 88564 .......... .......... .......... .......... .......... .......... 264 GTTGAGTGAA CTGTGTAGGT TATTGGGTGG ATGAAGTGAA AACTCAAGTA GAACATGTCT 88504 .......... .......... .......... .......... .......... .......... 264 ACAAGTGGAT TCTCTTGAGT TCAGCTTTAA GAACTATTGC GCAAGACACC TCAAAATCTT 88444 .......... .......... .......... .......... .......... .......... 264 CTATGCCCCT CTGTCTTATT ACACTGTACT ATGGAAACAT AGTTGATTAA AAGTGTCAGT 88384 .......... .......... .......... .......... .......... .......... 264 ACTGTAGGTG GGGAGAGTCC TTTTTGGCAT GAAAGGTTTA GGTACGAACA AGAGAGGGAA 88324 .......... .......... .......... .......... .......... .......... 264 AGTTTTTAAT GCTTTTTCCA TTGTTTTTGA GGCAATAATC TTGGTATGAC CTTTCCCTGC 88264 .......... .......... .......... .......... .......... .......... 264 AGGTGCTAGC AGCATTGGCT GAAACAATGA AGAAAGGAAC GAGTTTCGGT GCTCCATGTC 88204 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTGCTAGC AGCATTGGCT GAAACAATGA AGAAAGGAAC GAGTTTCGGT GCTCCATGTC 322 TCCTTGAAAA TACACTGGCA GAGATGGTTA TTTCAGCTGT TCCAAGCATA GAAATGGTTC 88144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGAAAA TACACTGGCA GAGATGGTTA TTTCAGCTGT TCCAAGCATA GAAATGGTTC 382 GATTTGTCAA CTCTGGTACA GAAGCATGTA TGGGAGTACT ACGGCTGGCT CGTGCTTTCA 88084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTGTCAA CTCTGGTACA GAAGCATGTA TGGGAGTACT ACGGCTGGCT CGTGCTTTCA 442 C 88083 | C 443 hqPGS_C04HBa0127E11.1-_SGN-E295005+ (90663 90574,89207 89034,88261 88083) ******************************************************************************** EST sequence 99 +strand 551 n (File: SGN-E268562+) 1 GCAAGATCAC CAAAGAGAAT GATGCACTTC TTATTTTCGA CGAAGTCATG ACTGGATTTA 61 GATTGGCATA TGGCGGTGCT CAAGAGTATT TTGGAATAAC TCCAGATTTG ACAACACTCG 121 GGAAGATTAT TGGCGGTGGC TTGCCAGTAG GTGCTTACGG AGGAAGACGG GATATAATGG 181 AGATGGTAGC ACCTGCAGGA CCAATGTATC AAGCTGGCAC CCTAAGTGGA AACCCATTGG 241 CCATGACTGC TGGAATTCAC ACGCTTAAGC GGTTACAAGG ACAGGGAACA TACGAACACT 301 TGGACAAGAT CACCGCGGAA CTTACACAAG GAATCTTGGA TGCTGGAAAG AAGACCGGTC 361 ATGCAATGTG TGGTGGCTCC ATAAGGGGGA TGTTTGGCTT CTTCTTCGCG GATGGTCCCA 421 TCTATAACTT TTCGGATGCA AAGAAGAGTG ATACAGAAAA ATTTGGCAGA TTCTATAGAG 481 GGATGCTGGA GGAAGGTGTT TACTTTGCAC CATCACAGTT TGAGGCTGGA TGTACTAGCT 541 TAGCACACAC T Predicted gene structure (within gDNA segment 88401 to 86641): Exon 1 87801 87251 ( 551 n); cDNA 1 551 ( 551 n); score: 0.998 MATCH C04HBa0127E11.1- SGN-E268562+ 0.998 551 1.000 C PGS_C04HBa0127E11.1-_SGN-E268562+ (87801 87251) Alignment (genomic DNA sequence = upper lines): GCAAGATCAC CAAAGAGAAT GATGCACTTC TTATTTTCGA CGAAGTCATG ACTGGATTTA 87742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGATCAC CAAAGAGAAT GATGCACTTC TTATTTTCGA CGAAGTCATG ACTGGATTTA 60 GATTGGCATA TGGCGGTGCT CAAGAGTATT TTGGAATAAC TCCAGATTTG ACAACACTCG 87682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGGCATA TGGCGGTGCT CAAGAGTATT TTGGAATAAC TCCAGATTTG ACAACACTCG 120 GGAAGATTAT TGGCGGTGGC TTGCCAGTAG GTGCTTACGG AGGAAGACGG GATATAATGG 87622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGATTAT TGGCGGTGGC TTGCCAGTAG GTGCTTACGG AGGAAGACGG GATATAATGG 180 AGATGGTAGC ACCTGCAGGA CCAATGTATC AAGCTGGCAC CCTAAGTGGA AACCCATTGG 87562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGTAGC ACCTGCAGGA CCAATGTATC AAGCTGGCAC CCTAAGTGGA AACCCATTGG 240 CCATGACTGC TGGAATTCAC ACGCTTAAGC GGTTACAAGG ACAGGGAACA TACGAACACT 87502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGACTGC TGGAATTCAC ACGCTTAAGC GGTTACAAGG ACAGGGAACA TACGAACACT 300 TGGACAAGAT CACCGCGGAA CTTACACAAG GAATCTTGGA TGCTGGAAAG AAGACCGGTC 87442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACAAGAT CACCGCGGAA CTTACACAAG GAATCTTGGA TGCTGGAAAG AAGACCGGTC 360 ATGCAATGTG TGGTGGCTCC ATAAGGGGGA TGTTTGGCTT CTTCTTCGCG GATGGTCCCA 87382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAATGTG TGGTGGCTCC ATAAGGGGGA TGTTTGGCTT CTTCTTCGCG GATGGTCCCA 420 TCTATAACTT TTCGGATGCA AAGAAGAGTG ATACAGAAAA ATTTGGCAGA TTCTATAGAG 87322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATAACTT TTCGGATGCA AAGAAGAGTG ATACAGAAAA ATTTGGCAGA TTCTATAGAG 480 GGATGCTGGA GGAAGGTGTT TACTTTGCAC CATCACAGTT TGAGGCTGGA TTTACTAGCT 87262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GGATGCTGGA GGAAGGTGTT TACTTTGCAC CATCACAGTT TGAGGCTGGA TGTACTAGCT 540 TAGCACACAC T 87251 |||||||||| | TAGCACACAC T 551 hqPGS_C04HBa0127E11.1-_SGN-E268562+ (87801 87251) ******************************************************************************** EST sequence 111 +strand 520 n (File: SGN-E317523+) 1 AAAACCCATT GCAGCACTAA TTCAAGAATA CTCAGAGAGA GAAGAGGAAG AGTTGGTAAC 61 AATGGCTGCT GTAAATGGTG TAGGACTTTC ATGGCCATCA AAATTGACCA AAAATCAAAC 121 ACCCAAATGG GGTTTTTCTC CATCTCACCG TCGATGCAAC CCATCTTCTT CTTCTTCTTC 181 TGCAACCATT AGAATGACAG CCTCAGTTGA TGAAAAGAAG AAAACGTTCA CACTTGAGAA 241 GTCTGAAGAA GCTTTCAGCA AAGCCAAGGA GTTGATGCCA GGAGGTGTAA ATTCCCCTGT 301 CCGTGCTTTC AAGTCAGTTG GCGGACAACC TATCATTATT GACTCCGTGA AGGGCTCTCG 361 TATGCGGGAC ATAGATGGTA ACGAGTACAT TGACTATGTC GGATCATGGG GACCAGCTAT 421 AATTGGTCAT GCGGATGATG AGGTGCTAGC AGCATTGGCT GAAACAATGA AGAAAGGAAC 481 GAGTTTCGGT GCTCCATGTC TCCTTGAATA TACACTGGCA Predicted gene structure (within gDNA segment 91441 to 87466): Exon 1 90841 90574 ( 268 n); cDNA 1 268 ( 268 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 269 442 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 88184 ( 78 n); cDNA 443 520 ( 78 n); score: 0.987 MATCH C04HBa0127E11.1- SGN-E317523+ 0.998 520 1.000 C PGS_C04HBa0127E11.1-_SGN-E317523+ (90841 90574,89207 89034,88261 88184) Alignment (genomic DNA sequence = upper lines): AAAACCCATT GCAGCACTAA TTCAAGAATA CTCAGAGAGA GAAGAGGAAG AGTTGGTAAC 90782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACCCATT GCAGCACTAA TTCAAGAATA CTCAGAGAGA GAAGAGGAAG AGTTGGTAAC 60 AATGGCTGCT GTAAATGGTG TAGGACTTTC ATGGCCATCA AAATTGACCA AAAATCAAAC 90722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCTGCT GTAAATGGTG TAGGACTTTC ATGGCCATCA AAATTGACCA AAAATCAAAC 120 ACCCAAATGG GGTTTTTCTC CATCTCACCG TCGATGCAAC CCATCTTCTT CTTCTTCTTC 90662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCAAATGG GGTTTTTCTC CATCTCACCG TCGATGCAAC CCATCTTCTT CTTCTTCTTC 180 TGCAACCATT AGAATGACAG CCTCAGTTGA TGAAAAGAAG AAAACGTTCA CACTTGAGAA 90602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAACCATT AGAATGACAG CCTCAGTTGA TGAAAAGAAG AAAACGTTCA CACTTGAGAA 240 GTCTGAAGAA GCTTTCAGCA AAGCCAAGGT AATCAAAATT CAGTTTTTTT TTTTTTTTTT 90542 |||||||||| |||||||||| |||||||| GTCTGAAGAA GCTTTCAGCA AAGCCAAG.. .......... .......... .......... 268 GGCTTCATGT TCATACAATT CAATTTGGTG ATGTTATTCA GTACTCATTA GACAAAAGTA 90482 .......... .......... .......... .......... .......... .......... 268 AGGTTCAAAA ATCCATAGAC TCAAAATCCT GGATCCACCT CATCTTCTAG ATAAGGTGGT 90422 .......... .......... .......... .......... .......... .......... 268 GATAATATTC AAGATTATGG ATATTGTTCA GTGTTTGTTC TTTGATTTGA AGTGTATTGG 90362 .......... .......... .......... .......... .......... .......... 268 TCAAGATTTG ATTTTTCATG CTAATATTGC TGGTAAAATT GGAGGGGGTT GTCATGTGAC 90302 .......... .......... .......... .......... .......... .......... 268 CAGGAGGTTA TGGGTTCGAG CTGTAGGTAC AGCCTTTTGC AGAAATGCAG GTTAAGGCTG 90242 .......... .......... .......... .......... .......... .......... 268 CATACTATAG ACCCTTGTGG TCCGGCCCTT CCACCCCAAG CATAGTGGGA GCTTAAAATT 90182 .......... .......... .......... .......... .......... .......... 268 GCTAGCTTTA AGATATTTGG GTTGGATGAA GAGAAGAAAA AGGATATGTT GATTTGATAA 90122 .......... .......... .......... .......... .......... .......... 268 AGTTGGTGTT AGGTGTACAA ACAAAGTCTT AGGCTCTGAG CTGAAAAGAA AGTAAAAGAC 90062 .......... .......... .......... .......... .......... .......... 268 TTTGTAATGA TATTGTTAAT GGTGTGAGGC TTTTTTTGGA GAAAACCGTG TGGATTTGGT 90002 .......... .......... .......... .......... .......... .......... 268 TTTAGTCCAA AGTGGACAAT ACTGCACCAT GTTTAAAGTA TCTTTGGGTT GTTTTAGCCT 89942 .......... .......... .......... .......... .......... .......... 268 AACAGTTGGT TCACCTGCCA TTTTGGCATC TGCTGATGAA TTGATGTATA ACCAGTGCTC 89882 .......... .......... .......... .......... .......... .......... 268 TCTGATCTAA CATACAGTCT AGTTGTCCTC CCATATAAGT TAGTATAGCT TAACTGTGAT 89822 .......... .......... .......... .......... .......... .......... 268 CTATTTGTGA CTTTATGAGA ACCTTGAGTA TGTTTTAGAT GTTGGTTGTG CTCAAAAGGC 89762 .......... .......... .......... .......... .......... .......... 268 GTAATTTTTA TCACTGTTTA AATTTCATGA ATATCCGAGG TGGTTTGACT ACAAAGAGGA 89702 .......... .......... .......... .......... .......... .......... 268 GATATATTGA TGGATCTGAT AATGTAGCAC AATTTCTGCA GCAAAATATG TTTGTTTGCT 89642 .......... .......... .......... .......... .......... .......... 268 TTAGTTGGTT CTGTTTCCCT TTATTTATTC TTTTGTTCTT GTGTATCTTC TGATGTGACC 89582 .......... .......... .......... .......... .......... .......... 268 TACTGAGATT GGAACCTATG AGGGGGAAAT GCTAAACCCT ATCACATTTT CTAGATGGGG 89522 .......... .......... .......... .......... .......... .......... 268 TAAAAGGTTA GAAAAATGGC GCTTGAGGAA GAACAAATTG AACAACATTT CGTCCTTAGT 89462 .......... .......... .......... .......... .......... .......... 268 TGAAAAGGGA CTAACACTTT GAACCTGAAA ATACAGTTCA ACTAATTTTT CAGTTAATTG 89402 .......... .......... .......... .......... .......... .......... 268 GTGTAAGCCT TCAATCTACA AAGGTACACT TGATTCATGT TATTCTTCTT GTGTTGTGCT 89342 .......... .......... .......... .......... .......... .......... 268 CAAAATCTCT ATACATTAGT ATCTTGCAGC AGAATACTCC CGAAAGCAAA GAGGAGGAAA 89282 .......... .......... .......... .......... .......... .......... 268 GATTCAATCA ATTTTATTAA TCCTTAGTCC CTACAAGTTC TTTCATTGAT TTCATCGTGT 89222 .......... .......... .......... .......... .......... .......... 268 TTTACTGTTG GTAGGAGTTG ATGCCAGGAG GTGTAAATTC CCCTGTCCGT GCTTTCAAGT 89162 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAGTTG ATGCCAGGAG GTGTAAATTC CCCTGTCCGT GCTTTCAAGT 314 CAGTTGGCGG ACAACCTATC ATTATTGACT CCGTGAAGGG CTCTCGTATG CGGGACATAG 89102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTGGCGG ACAACCTATC ATTATTGACT CCGTGAAGGG CTCTCGTATG CGGGACATAG 374 ATGGTAACGA GTACATTGAC TATGTCGGAT CATGGGGACC AGCTATAATT GGTCATGCGG 89042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTAACGA GTACATTGAC TATGTCGGAT CATGGGGACC AGCTATAATT GGTCATGCGG 434 ATGATGAGGT TTAGTTCTCT ACTCTCAACT CTATGTTAAG CTTGAAATTT CATTAGTCAC 88982 |||||||| ATGATGAG.. .......... .......... .......... .......... .......... 442 TGTGCATTTA TTTGGCCTGG CTTGTTAGTA ATAAGTTATT ACTGCATCTA CTTGCTTTGT 88922 .......... .......... .......... .......... .......... .......... 442 ATTTGGTAAC ATGTTTTAGA AACTCCGTCT TAAAGCTGCT TCTTGTCTTT GCTCTCATTA 88862 .......... .......... .......... .......... .......... .......... 442 CAGGTTCGGT AAGTTTTGTA TTTTGGAAGA ACCATTGAAT TACTTTGGCC TTAAATGACT 88802 .......... .......... .......... .......... .......... .......... 442 ATTTATGACT ACGAAGAACA TATGGTTTAA GTTTTTAATC TTAACCTGAG ACCTCATGGT 88742 .......... .......... .......... .......... .......... .......... 442 GCTTGACCCA TTTATTGACC GCTAGGCCAC ACCCTTGGGT GCTTCTTTTG TTCTTTTTCT 88682 .......... .......... .......... .......... .......... .......... 442 TAAATAGAAA TTGGTATTTG ACGTCCATCT TGTAGACGGT TCCTGTGATA GTGTATAAAT 88622 .......... .......... .......... .......... .......... .......... 442 CAGTATTATT AAAAGTTGAC TGATGAGCAT TTCTTAACTG GGAACGATTT GGTTGGAGGT 88562 .......... .......... .......... .......... .......... .......... 442 TGAGTGAACT GTGTAGGTTA TTGGGTGGAT GAAGTGAAAA CTCAAGTAGA ACATGTCTAC 88502 .......... .......... .......... .......... .......... .......... 442 AAGTGGATTC TCTTGAGTTC AGCTTTAAGA ACTATTGCGC AAGACACCTC AAAATCTTCT 88442 .......... .......... .......... .......... .......... .......... 442 ATGCCCCTCT GTCTTATTAC ACTGTACTAT GGAAACATAG TTGATTAAAA GTGTCAGTAC 88382 .......... .......... .......... .......... .......... .......... 442 TGTAGGTGGG GAGAGTCCTT TTTGGCATGA AAGGTTTAGG TACGAACAAG AGAGGGAAAG 88322 .......... .......... .......... .......... .......... .......... 442 TTTTTAATGC TTTTTCCATT GTTTTTGAGG CAATAATCTT GGTATGACCT TTCCCTGCAG 88262 .......... .......... .......... .......... .......... .......... 442 GTGCTAGCAG CATTGGCTGA AACAATGAAG AAAGGAACGA GTTTCGGTGC TCCATGTCTC 88202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTAGCAG CATTGGCTGA AACAATGAAG AAAGGAACGA GTTTCGGTGC TCCATGTCTC 502 CTTGAAAATA CACTGGCA 88184 |||||| ||| |||||||| CTTGAATATA CACTGGCA 520 hqPGS_C04HBa0127E11.1-_SGN-E317523+ (90841 90574,89207 89034,88261 88184) ******************************************************************************** EST sequence 67 +strand 475 n (File: SGN-E325340+) 1 AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT AGGACTTTCA TGGCCATCAA 61 AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC ATCTCACCGT CGATGCAACC 121 CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC CTCAGTTGAT GAAAAGAAGA 181 AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA AGCCAAGGAG TTGATGCCAG 241 GAGGTGTAAA TTCCCCTGTC CGTGCTTTCA AGTCAGTTGG CGGACAACCT ATCATTATTG 301 ACTCCGTGAA GGGCTCTCGT ATGCGGGACA TAGATGGTAA CGAGTACATT GACTATGTCG 361 GATCATGGGG ACCAGCTATA ATTGGTCATG CGGATGATGA GGTGCTAGCA GCATTGGCTG 421 AAACAATGAA GAAAGGAACG AGTTTCGGTG CTCCATGTCT CCTTGAAAAT ACACT Predicted gene structure (within gDNA segment 91400 to 87578): Exon 1 90800 90574 ( 227 n); cDNA 1 227 ( 227 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 228 401 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 88188 ( 74 n); cDNA 402 475 ( 74 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E325340+ 1.000 475 1.000 C PGS_C04HBa0127E11.1-_SGN-E325340+ (90800 90574,89207 89034,88261 88188) Alignment (genomic DNA sequence = upper lines): AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT AGGACTTTCA TGGCCATCAA 90741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT AGGACTTTCA TGGCCATCAA 60 AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC ATCTCACCGT CGATGCAACC 90681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC ATCTCACCGT CGATGCAACC 120 CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC CTCAGTTGAT GAAAAGAAGA 90621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC CTCAGTTGAT GAAAAGAAGA 180 AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA AGCCAAGGTA ATCAAAATTC 90561 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA AGCCAAG... .......... 227 AGTTTTTTTT TTTTTTTTTG GCTTCATGTT CATACAATTC AATTTGGTGA TGTTATTCAG 90501 .......... .......... .......... .......... .......... .......... 227 TACTCATTAG ACAAAAGTAA GGTTCAAAAA TCCATAGACT CAAAATCCTG GATCCACCTC 90441 .......... .......... .......... .......... .......... .......... 227 ATCTTCTAGA TAAGGTGGTG ATAATATTCA AGATTATGGA TATTGTTCAG TGTTTGTTCT 90381 .......... .......... .......... .......... .......... .......... 227 TTGATTTGAA GTGTATTGGT CAAGATTTGA TTTTTCATGC TAATATTGCT GGTAAAATTG 90321 .......... .......... .......... .......... .......... .......... 227 GAGGGGGTTG TCATGTGACC AGGAGGTTAT GGGTTCGAGC TGTAGGTACA GCCTTTTGCA 90261 .......... .......... .......... .......... .......... .......... 227 GAAATGCAGG TTAAGGCTGC ATACTATAGA CCCTTGTGGT CCGGCCCTTC CACCCCAAGC 90201 .......... .......... .......... .......... .......... .......... 227 ATAGTGGGAG CTTAAAATTG CTAGCTTTAA GATATTTGGG TTGGATGAAG AGAAGAAAAA 90141 .......... .......... .......... .......... .......... .......... 227 GGATATGTTG ATTTGATAAA GTTGGTGTTA GGTGTACAAA CAAAGTCTTA GGCTCTGAGC 90081 .......... .......... .......... .......... .......... .......... 227 TGAAAAGAAA GTAAAAGACT TTGTAATGAT ATTGTTAATG GTGTGAGGCT TTTTTTGGAG 90021 .......... .......... .......... .......... .......... .......... 227 AAAACCGTGT GGATTTGGTT TTAGTCCAAA GTGGACAATA CTGCACCATG TTTAAAGTAT 89961 .......... .......... .......... .......... .......... .......... 227 CTTTGGGTTG TTTTAGCCTA ACAGTTGGTT CACCTGCCAT TTTGGCATCT GCTGATGAAT 89901 .......... .......... .......... .......... .......... .......... 227 TGATGTATAA CCAGTGCTCT CTGATCTAAC ATACAGTCTA GTTGTCCTCC CATATAAGTT 89841 .......... .......... .......... .......... .......... .......... 227 AGTATAGCTT AACTGTGATC TATTTGTGAC TTTATGAGAA CCTTGAGTAT GTTTTAGATG 89781 .......... .......... .......... .......... .......... .......... 227 TTGGTTGTGC TCAAAAGGCG TAATTTTTAT CACTGTTTAA ATTTCATGAA TATCCGAGGT 89721 .......... .......... .......... .......... .......... .......... 227 GGTTTGACTA CAAAGAGGAG ATATATTGAT GGATCTGATA ATGTAGCACA ATTTCTGCAG 89661 .......... .......... .......... .......... .......... .......... 227 CAAAATATGT TTGTTTGCTT TAGTTGGTTC TGTTTCCCTT TATTTATTCT TTTGTTCTTG 89601 .......... .......... .......... .......... .......... .......... 227 TGTATCTTCT GATGTGACCT ACTGAGATTG GAACCTATGA GGGGGAAATG CTAAACCCTA 89541 .......... .......... .......... .......... .......... .......... 227 TCACATTTTC TAGATGGGGT AAAAGGTTAG AAAAATGGCG CTTGAGGAAG AACAAATTGA 89481 .......... .......... .......... .......... .......... .......... 227 ACAACATTTC GTCCTTAGTT GAAAAGGGAC TAACACTTTG AACCTGAAAA TACAGTTCAA 89421 .......... .......... .......... .......... .......... .......... 227 CTAATTTTTC AGTTAATTGG TGTAAGCCTT CAATCTACAA AGGTACACTT GATTCATGTT 89361 .......... .......... .......... .......... .......... .......... 227 ATTCTTCTTG TGTTGTGCTC AAAATCTCTA TACATTAGTA TCTTGCAGCA GAATACTCCC 89301 .......... .......... .......... .......... .......... .......... 227 GAAAGCAAAG AGGAGGAAAG ATTCAATCAA TTTTATTAAT CCTTAGTCCC TACAAGTTCT 89241 .......... .......... .......... .......... .......... .......... 227 TTCATTGATT TCATCGTGTT TTACTGTTGG TAGGAGTTGA TGCCAGGAGG TGTAAATTCC 89181 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GAGTTGA TGCCAGGAGG TGTAAATTCC 254 CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA CAACCTATCA TTATTGACTC CGTGAAGGGC 89121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA CAACCTATCA TTATTGACTC CGTGAAGGGC 314 TCTCGTATGC GGGACATAGA TGGTAACGAG TACATTGACT ATGTCGGATC ATGGGGACCA 89061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGTATGC GGGACATAGA TGGTAACGAG TACATTGACT ATGTCGGATC ATGGGGACCA 374 GCTATAATTG GTCATGCGGA TGATGAGGTT TAGTTCTCTA CTCTCAACTC TATGTTAAGC 89001 |||||||||| |||||||||| ||||||| GCTATAATTG GTCATGCGGA TGATGAG... .......... .......... .......... 401 TTGAAATTTC ATTAGTCACT GTGCATTTAT TTGGCCTGGC TTGTTAGTAA TAAGTTATTA 88941 .......... .......... .......... .......... .......... .......... 401 CTGCATCTAC TTGCTTTGTA TTTGGTAACA TGTTTTAGAA ACTCCGTCTT AAAGCTGCTT 88881 .......... .......... .......... .......... .......... .......... 401 CTTGTCTTTG CTCTCATTAC AGGTTCGGTA AGTTTTGTAT TTTGGAAGAA CCATTGAATT 88821 .......... .......... .......... .......... .......... .......... 401 ACTTTGGCCT TAAATGACTA TTTATGACTA CGAAGAACAT ATGGTTTAAG TTTTTAATCT 88761 .......... .......... .......... .......... .......... .......... 401 TAACCTGAGA CCTCATGGTG CTTGACCCAT TTATTGACCG CTAGGCCACA CCCTTGGGTG 88701 .......... .......... .......... .......... .......... .......... 401 CTTCTTTTGT TCTTTTTCTT AAATAGAAAT TGGTATTTGA CGTCCATCTT GTAGACGGTT 88641 .......... .......... .......... .......... .......... .......... 401 CCTGTGATAG TGTATAAATC AGTATTATTA AAAGTTGACT GATGAGCATT TCTTAACTGG 88581 .......... .......... .......... .......... .......... .......... 401 GAACGATTTG GTTGGAGGTT GAGTGAACTG TGTAGGTTAT TGGGTGGATG AAGTGAAAAC 88521 .......... .......... .......... .......... .......... .......... 401 TCAAGTAGAA CATGTCTACA AGTGGATTCT CTTGAGTTCA GCTTTAAGAA CTATTGCGCA 88461 .......... .......... .......... .......... .......... .......... 401 AGACACCTCA AAATCTTCTA TGCCCCTCTG TCTTATTACA CTGTACTATG GAAACATAGT 88401 .......... .......... .......... .......... .......... .......... 401 TGATTAAAAG TGTCAGTACT GTAGGTGGGG AGAGTCCTTT TTGGCATGAA AGGTTTAGGT 88341 .......... .......... .......... .......... .......... .......... 401 ACGAACAAGA GAGGGAAAGT TTTTAATGCT TTTTCCATTG TTTTTGAGGC AATAATCTTG 88281 .......... .......... .......... .......... .......... .......... 401 GTATGACCTT TCCCTGCAGG TGCTAGCAGC ATTGGCTGAA ACAATGAAGA AAGGAACGAG 88221 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TGCTAGCAGC ATTGGCTGAA ACAATGAAGA AAGGAACGAG 442 TTTCGGTGCT CCATGTCTCC TTGAAAATAC ACT 88188 |||||||||| |||||||||| |||||||||| ||| TTTCGGTGCT CCATGTCTCC TTGAAAATAC ACT 475 hqPGS_C04HBa0127E11.1-_SGN-E325340+ (90800 90574,89207 89034,88261 88188) ******************************************************************************** EST sequence 148 +strand 486 n (File: SGN-E322880+) 1 AAGAATACTC AGAGAGAGAA GAGGAAGAGT TGGTAACAAT GGCTGCTGTA AATGGTGTAG 61 GACTTTCATG GCCATCAAAA TTGACCAAAA ATCAAACACC CAAATGGGGT TTTTCTCCAT 121 CTCACCGTCG ATGCAACCCA TCTTCTTCTT CTTCTTCTGC AACCATTAGA ATGACAGCCT 181 CAGTTGATGA AAAGAAGAAA ACGTTCACAC TTGAGAAGTC TGAAGAAGCT TTCAGCAAAG 241 CCAAGGAGTT GATGCCAGGA GGTGTAAATT CCCCTGTCCG TGCTTTCAAG TCAGTTGGCG 301 GACAACCTAT CATTATTGAC TCCGTGAAGG GCTCTCGTAT GCGGGACATA GATGGTAACG 361 AGTACATTGA CTATGTCGGA TCATGGGGAC CAGCTATAAT TGGTCATGCG GATGATGAGG 421 TGCTAGCAGC ATTGGCTGAA ACAATGAAGA AAGGAACGAG TTTCNGTGCT CCATGTCTCC 481 CTTGAA Predicted gene structure (within gDNA segment 91418 to 87387): Exon 1 90818 90574 ( 245 n); cDNA 1 245 ( 245 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 246 419 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 3 88261 88195 ( 67 n); cDNA 420 486 ( 67 n); score: 0.940 MATCH C04HBa0127E11.1- SGN-E322880+ 0.992 486 1.000 C PGS_C04HBa0127E11.1-_SGN-E322880+ (90818 90574,89207 89034,88261 88195) Alignment (genomic DNA sequence = upper lines): AAGAATACTC AGAGAGAGAA GAGGAAGAGT TGGTAACAAT GGCTGCTGTA AATGGTGTAG 90759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATACTC AGAGAGAGAA GAGGAAGAGT TGGTAACAAT GGCTGCTGTA AATGGTGTAG 60 GACTTTCATG GCCATCAAAA TTGACCAAAA ATCAAACACC CAAATGGGGT TTTTCTCCAT 90699 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTTCATG GCCATCAAAA TTGACCAAAA ATCAAACACC CAAATGGGGT TTTTCTCCAT 120 CTCACCGTCG ATGCAACCCA TCTTCTTCTT CTTCTTCTGC AACCATTAGA ATGACAGCCT 90639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCACCGTCG ATGCAACCCA TCTTCTTCTT CTTCTTCTGC AACCATTAGA ATGACAGCCT 180 CAGTTGATGA AAAGAAGAAA ACGTTCACAC TTGAGAAGTC TGAAGAAGCT TTCAGCAAAG 90579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTGATGA AAAGAAGAAA ACGTTCACAC TTGAGAAGTC TGAAGAAGCT TTCAGCAAAG 240 CCAAGGTAAT CAAAATTCAG TTTTTTTTTT TTTTTTTGGC TTCATGTTCA TACAATTCAA 90519 ||||| CCAAG..... .......... .......... .......... .......... .......... 245 TTTGGTGATG TTATTCAGTA CTCATTAGAC AAAAGTAAGG TTCAAAAATC CATAGACTCA 90459 .......... .......... .......... .......... .......... .......... 245 AAATCCTGGA TCCACCTCAT CTTCTAGATA AGGTGGTGAT AATATTCAAG ATTATGGATA 90399 .......... .......... .......... .......... .......... .......... 245 TTGTTCAGTG TTTGTTCTTT GATTTGAAGT GTATTGGTCA AGATTTGATT TTTCATGCTA 90339 .......... .......... .......... .......... .......... .......... 245 ATATTGCTGG TAAAATTGGA GGGGGTTGTC ATGTGACCAG GAGGTTATGG GTTCGAGCTG 90279 .......... .......... .......... .......... .......... .......... 245 TAGGTACAGC CTTTTGCAGA AATGCAGGTT AAGGCTGCAT ACTATAGACC CTTGTGGTCC 90219 .......... .......... .......... .......... .......... .......... 245 GGCCCTTCCA CCCCAAGCAT AGTGGGAGCT TAAAATTGCT AGCTTTAAGA TATTTGGGTT 90159 .......... .......... .......... .......... .......... .......... 245 GGATGAAGAG AAGAAAAAGG ATATGTTGAT TTGATAAAGT TGGTGTTAGG TGTACAAACA 90099 .......... .......... .......... .......... .......... .......... 245 AAGTCTTAGG CTCTGAGCTG AAAAGAAAGT AAAAGACTTT GTAATGATAT TGTTAATGGT 90039 .......... .......... .......... .......... .......... .......... 245 GTGAGGCTTT TTTTGGAGAA AACCGTGTGG ATTTGGTTTT AGTCCAAAGT GGACAATACT 89979 .......... .......... .......... .......... .......... .......... 245 GCACCATGTT TAAAGTATCT TTGGGTTGTT TTAGCCTAAC AGTTGGTTCA CCTGCCATTT 89919 .......... .......... .......... .......... .......... .......... 245 TGGCATCTGC TGATGAATTG ATGTATAACC AGTGCTCTCT GATCTAACAT ACAGTCTAGT 89859 .......... .......... .......... .......... .......... .......... 245 TGTCCTCCCA TATAAGTTAG TATAGCTTAA CTGTGATCTA TTTGTGACTT TATGAGAACC 89799 .......... .......... .......... .......... .......... .......... 245 TTGAGTATGT TTTAGATGTT GGTTGTGCTC AAAAGGCGTA ATTTTTATCA CTGTTTAAAT 89739 .......... .......... .......... .......... .......... .......... 245 TTCATGAATA TCCGAGGTGG TTTGACTACA AAGAGGAGAT ATATTGATGG ATCTGATAAT 89679 .......... .......... .......... .......... .......... .......... 245 GTAGCACAAT TTCTGCAGCA AAATATGTTT GTTTGCTTTA GTTGGTTCTG TTTCCCTTTA 89619 .......... .......... .......... .......... .......... .......... 245 TTTATTCTTT TGTTCTTGTG TATCTTCTGA TGTGACCTAC TGAGATTGGA ACCTATGAGG 89559 .......... .......... .......... .......... .......... .......... 245 GGGAAATGCT AAACCCTATC ACATTTTCTA GATGGGGTAA AAGGTTAGAA AAATGGCGCT 89499 .......... .......... .......... .......... .......... .......... 245 TGAGGAAGAA CAAATTGAAC AACATTTCGT CCTTAGTTGA AAAGGGACTA ACACTTTGAA 89439 .......... .......... .......... .......... .......... .......... 245 CCTGAAAATA CAGTTCAACT AATTTTTCAG TTAATTGGTG TAAGCCTTCA ATCTACAAAG 89379 .......... .......... .......... .......... .......... .......... 245 GTACACTTGA TTCATGTTAT TCTTCTTGTG TTGTGCTCAA AATCTCTATA CATTAGTATC 89319 .......... .......... .......... .......... .......... .......... 245 TTGCAGCAGA ATACTCCCGA AAGCAAAGAG GAGGAAAGAT TCAATCAATT TTATTAATCC 89259 .......... .......... .......... .......... .......... .......... 245 TTAGTCCCTA CAAGTTCTTT CATTGATTTC ATCGTGTTTT ACTGTTGGTA GGAGTTGATG 89199 ||||||||| .......... .......... .......... .......... .......... .GAGTTGATG 254 CCAGGAGGTG TAAATTCCCC TGTCCGTGCT TTCAAGTCAG TTGGCGGACA ACCTATCATT 89139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGAGGTG TAAATTCCCC TGTCCGTGCT TTCAAGTCAG TTGGCGGACA ACCTATCATT 314 ATTGACTCCG TGAAGGGCTC TCGTATGCGG GACATAGATG GTAACGAGTA CATTGACTAT 89079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGACTCCG TGAAGGGCTC TCGTATGCGG GACATAGATG GTAACGAGTA CATTGACTAT 374 GTCGGATCAT GGGGACCAGC TATAATTGGT CATGCGGATG ATGAGGTTTA GTTCTCTACT 89019 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTCGGATCAT GGGGACCAGC TATAATTGGT CATGCGGATG ATGAG..... .......... 419 CTCAACTCTA TGTTAAGCTT GAAATTTCAT TAGTCACTGT GCATTTATTT GGCCTGGCTT 88959 .......... .......... .......... .......... .......... .......... 419 GTTAGTAATA AGTTATTACT GCATCTACTT GCTTTGTATT TGGTAACATG TTTTAGAAAC 88899 .......... .......... .......... .......... .......... .......... 419 TCCGTCTTAA AGCTGCTTCT TGTCTTTGCT CTCATTACAG GTTCGGTAAG TTTTGTATTT 88839 .......... .......... .......... .......... .......... .......... 419 TGGAAGAACC ATTGAATTAC TTTGGCCTTA AATGACTATT TATGACTACG AAGAACATAT 88779 .......... .......... .......... .......... .......... .......... 419 GGTTTAAGTT TTTAATCTTA ACCTGAGACC TCATGGTGCT TGACCCATTT ATTGACCGCT 88719 .......... .......... .......... .......... .......... .......... 419 AGGCCACACC CTTGGGTGCT TCTTTTGTTC TTTTTCTTAA ATAGAAATTG GTATTTGACG 88659 .......... .......... .......... .......... .......... .......... 419 TCCATCTTGT AGACGGTTCC TGTGATAGTG TATAAATCAG TATTATTAAA AGTTGACTGA 88599 .......... .......... .......... .......... .......... .......... 419 TGAGCATTTC TTAACTGGGA ACGATTTGGT TGGAGGTTGA GTGAACTGTG TAGGTTATTG 88539 .......... .......... .......... .......... .......... .......... 419 GGTGGATGAA GTGAAAACTC AAGTAGAACA TGTCTACAAG TGGATTCTCT TGAGTTCAGC 88479 .......... .......... .......... .......... .......... .......... 419 TTTAAGAACT ATTGCGCAAG ACACCTCAAA ATCTTCTATG CCCCTCTGTC TTATTACACT 88419 .......... .......... .......... .......... .......... .......... 419 GTACTATGGA AACATAGTTG ATTAAAAGTG TCAGTACTGT AGGTGGGGAG AGTCCTTTTT 88359 .......... .......... .......... .......... .......... .......... 419 GGCATGAAAG GTTTAGGTAC GAACAAGAGA GGGAAAGTTT TTAATGCTTT TTCCATTGTT 88299 .......... .......... .......... .......... .......... .......... 419 TTTGAGGCAA TAATCTTGGT ATGACCTTTC CCTGCAGGTG CTAGCAGCAT TGGCTGAAAC 88239 ||| |||||||||| |||||||||| .......... .......... .......... .......GTG CTAGCAGCAT TGGCTGAAAC 442 AATGAAGAAA GGAACGAGTT TCGGTGCTCC ATGTCTCCTT GAAA 88195 |||||||||| |||||||||| || ||||||| |||||||| | || AATGAAGAAA GGAACGAGTT TCNGTGCTCC ATGTCTCCCT TGAA 486 hqPGS_C04HBa0127E11.1-_SGN-E322880+ (90818 90574,89207 89034,88261 88195) ******************************************************************************** EST sequence 18 -strand 788 n (File: SGN-E554638-) 1 GGAGCCACAA AGGAGAAATA GCCGCTGTAA TTTTCGAGCC TGTAGTCGGA AATGCTGGCT 61 TCATCCCACC TAAGCTAGAA TTTCTTGCTG CCATTCGCAA GATCACCAAA GAGAATGATG 121 CACTTCTTAT TTTCGACGAA GTCATGACTG GATTTAGATT GGCATATGGC GGTGCTCAAG 181 AGTATTTTGG AATAACTCCA GATTTGACAA CACTCGGGAA GATTATTGGC GGTGGCTTGC 241 CAGTAGGTGC TTACGGAGGA AGACGGGATA TAATGGAGAT GGTAGCACCT GCAGGACCAA 301 TGTATCAAGC TGGCACCCTA AGTGGAAACC CATTGGCCAT GACTGCTGGA ATTCACACGC 361 TTAAGCGGTT ACAAGGACAG GGAACATACG AACACTTGGA CAAGATCACC GCGGAACTTA 421 CACAAGGAAT CTTGGATGCT GGAAAGAAGA CCGGTCATGC AATGTGTGGT GGCTCCATAA 481 GGGGGATGTT TGGCTTCTTC TTCGCGGATG GTCCCATCTA TAACTTTTCG GATGCAAAGA 541 AGAGTGATAC AGAAAAATTT GGCAGATTCT ATAGAGGGAT GCTGGAGGAA GGTGTTTACT 601 TTGCACCATC ACAGTTTGAG GCTGGATTTA CTAGCTTAGC ACACACTCCA GAGGATATTC 661 AAAGGACTGT AGCTGCAGCT GAAAAAGTTT TGAAGCAAAT TTAACCACTA TATTTCTTTT 721 TGTATGCTAG ATGGAGAGAT TTTCCTTTTT AAGTTTTTGT TCTGTTGAAT AAAAGGTGAT 781 TTTGTAAC Predicted gene structure (within gDNA segment 88552 to 86510): Exon 1 87896 87110 ( 787 n); cDNA 1 788 ( 788 n); score: 0.996 MATCH C04HBa0127E11.1- SGN-E554638- 0.996 787 0.999 C PGS_C04HBa0127E11.1-_SGN-E554638- (87896 87110) Alignment (genomic DNA sequence = upper lines): GGAGC-ACAA AGGAGAAATA GCCGCTGTAA TTCTCGAGCC TGTAGTCGGA AATGCTGGCT 87838 ||||| |||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GGAGCCACAA AGGAGAAATA GCCGCTGTAA TTTTCGAGCC TGTAGTCGGA AATGCTGGCT 60 TCATCCCACC TAAGCTAGAA TTTCTTGCTG CCATTCGCAA GATCACCAAA GAGAATGATG 87778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCCACC TAAGCTAGAA TTTCTTGCTG CCATTCGCAA GATCACCAAA GAGAATGATG 120 CACTTCTTAT TTTCGACGAA GTCATGACTG GATTTAGATT GGCATATGGC GGTGCTCAAG 87718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCTTAT TTTCGACGAA GTCATGACTG GATTTAGATT GGCATATGGC GGTGCTCAAG 180 AGTATTTTGG AATAACTCCA GATTTGACAA CACTCGGGAA GATTATTGGC GGTGGCTTGC 87658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATTTTGG AATAACTCCA GATTTGACAA CACTCGGGAA GATTATTGGC GGTGGCTTGC 240 CAGTAGGTGC TTACGGAGGA AGACGGGATA TAATGGAGAT GGTAGCACCT GCAGGACCAA 87598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTAGGTGC TTACGGAGGA AGACGGGATA TAATGGAGAT GGTAGCACCT GCAGGACCAA 300 TGTATCAAGC TGGCACCCTA AGTGGAAACC CATTGGCCAT GACTGCTGGA ATTCACACGC 87538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATCAAGC TGGCACCCTA AGTGGAAACC CATTGGCCAT GACTGCTGGA ATTCACACGC 360 TTAAGCGGTT ACAAGGACAG GGAACATACG AACACTTGGA CAAGATCACC GCGGAACTTA 87478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCGGTT ACAAGGACAG GGAACATACG AACACTTGGA CAAGATCACC GCGGAACTTA 420 CACAAGGAAT CTTGGATGCT GGAAAGAAGA CCGGTCATGC AATGTGTGGT GGCTCCATAA 87418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAGGAAT CTTGGATGCT GGAAAGAAGA CCGGTCATGC AATGTGTGGT GGCTCCATAA 480 GGGGGATGTT TGGCTTCTTC TTCGCGGATG GTCCCATCTA TAACTTTTCG GATGCAAAGA 87358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGGATGTT TGGCTTCTTC TTCGCGGATG GTCCCATCTA TAACTTTTCG GATGCAAAGA 540 AGAGTGATAC AGAAAAATTT GGCAGATTCT ATAGAGGGAT GCTGGAGGAA GGTGTTTACT 87298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTGATAC AGAAAAATTT GGCAGATTCT ATAGAGGGAT GCTGGAGGAA GGTGTTTACT 600 TTGCACCATC ACAGTTTGAG GCTGGATTTA CTAGCTTAGC ACACACTCCA GAGGATATTC 87238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCACCATC ACAGTTTGAG GCTGGATTTA CTAGCTTAGC ACACACTCCA GAGGATATTC 660 AAAGGACTGT AGCTGCAGCT GAAAAAGTTT TGAAGCAAAT TTAACCACTA TATTTCTTTT 87178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGACTGT AGCTGCAGCT GAAAAAGTTT TGAAGCAAAT TTAACCACTA TATTTCTTTT 720 TGTATGCTAG ATGGAGAGAT TTTCCTTTTT AAGTTTTTGT TCTGTTGAAT AAAAGGTGAT 87118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATGCTAG ATGGAGAGAT TTTCCTTTTT AAGTTTTTGT TCTGTTGAAT AAAAGGTGAT 780 TTTGTAAC 87110 |||||||| TTTGTAAC 788 hqPGS_C04HBa0127E11.1-_SGN-E554638- (87896 87110) ******************************************************************************** EST sequence 73 +strand 459 n (File: SGN-E317415+) 1 AAGAGTTGGT AACAATGGCT GCTGTAAATG GTGTAGGACT TTCATGGCCA TCAAAATTGA 61 CCAAAAATCA AACACCCAAA TGGGGTTTTT CTCCATCTCA CCGTCGATGC AACCCATCTT 121 CTTCTTCTTC TTCTGCAACC ATTAGAATGA CAGCCTCAGT TGATGAAAAG AAGAAAACGT 181 TCACACTTGA GAAGTCTGAA GAAGCTTTCA GCAAAGCCAA GGAGTTGATG CCAGGAGGTG 241 TAAATTCCCC TGTCCGTGCT TTCAAGTCAG TTGGCGGACA ACCTATCATT ATTGACTCCG 301 TGAAGGGCTC TCGTATGCGG GACATAGATG GTAACGAGTA CATTGACTAT GTCGGATCAT 361 GGGGACCAGC TATAATTGGT CATGCGGATG ATGAAGTGCT AGCAGCATTG GCTGAAACAA 421 TGAAGAAAGG AACGAGTTTC GGTGCTCCAT GTCTCCTTG Predicted gene structure (within gDNA segment 91394 to 87588): Exon 1 90794 90574 ( 221 n); cDNA 1 221 ( 221 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 222 395 ( 174 n); score: 0.994 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 3 88261 88198 ( 64 n); cDNA 396 459 ( 64 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E317415+ 0.998 459 1.000 C PGS_C04HBa0127E11.1-_SGN-E317415+ (90794 90574,89207 89034,88261 88198) Alignment (genomic DNA sequence = upper lines): AAGAGTTGGT AACAATGGCT GCTGTAAATG GTGTAGGACT TTCATGGCCA TCAAAATTGA 90735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGTTGGT AACAATGGCT GCTGTAAATG GTGTAGGACT TTCATGGCCA TCAAAATTGA 60 CCAAAAATCA AACACCCAAA TGGGGTTTTT CTCCATCTCA CCGTCGATGC AACCCATCTT 90675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAAATCA AACACCCAAA TGGGGTTTTT CTCCATCTCA CCGTCGATGC AACCCATCTT 120 CTTCTTCTTC TTCTGCAACC ATTAGAATGA CAGCCTCAGT TGATGAAAAG AAGAAAACGT 90615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTCTTC TTCTGCAACC ATTAGAATGA CAGCCTCAGT TGATGAAAAG AAGAAAACGT 180 TCACACTTGA GAAGTCTGAA GAAGCTTTCA GCAAAGCCAA GGTAATCAAA ATTCAGTTTT 90555 |||||||||| |||||||||| |||||||||| |||||||||| | TCACACTTGA GAAGTCTGAA GAAGCTTTCA GCAAAGCCAA G......... .......... 221 TTTTTTTTTT TTTGGCTTCA TGTTCATACA ATTCAATTTG GTGATGTTAT TCAGTACTCA 90495 .......... .......... .......... .......... .......... .......... 221 TTAGACAAAA GTAAGGTTCA AAAATCCATA GACTCAAAAT CCTGGATCCA CCTCATCTTC 90435 .......... .......... .......... .......... .......... .......... 221 TAGATAAGGT GGTGATAATA TTCAAGATTA TGGATATTGT TCAGTGTTTG TTCTTTGATT 90375 .......... .......... .......... .......... .......... .......... 221 TGAAGTGTAT TGGTCAAGAT TTGATTTTTC ATGCTAATAT TGCTGGTAAA ATTGGAGGGG 90315 .......... .......... .......... .......... .......... .......... 221 GTTGTCATGT GACCAGGAGG TTATGGGTTC GAGCTGTAGG TACAGCCTTT TGCAGAAATG 90255 .......... .......... .......... .......... .......... .......... 221 CAGGTTAAGG CTGCATACTA TAGACCCTTG TGGTCCGGCC CTTCCACCCC AAGCATAGTG 90195 .......... .......... .......... .......... .......... .......... 221 GGAGCTTAAA ATTGCTAGCT TTAAGATATT TGGGTTGGAT GAAGAGAAGA AAAAGGATAT 90135 .......... .......... .......... .......... .......... .......... 221 GTTGATTTGA TAAAGTTGGT GTTAGGTGTA CAAACAAAGT CTTAGGCTCT GAGCTGAAAA 90075 .......... .......... .......... .......... .......... .......... 221 GAAAGTAAAA GACTTTGTAA TGATATTGTT AATGGTGTGA GGCTTTTTTT GGAGAAAACC 90015 .......... .......... .......... .......... .......... .......... 221 GTGTGGATTT GGTTTTAGTC CAAAGTGGAC AATACTGCAC CATGTTTAAA GTATCTTTGG 89955 .......... .......... .......... .......... .......... .......... 221 GTTGTTTTAG CCTAACAGTT GGTTCACCTG CCATTTTGGC ATCTGCTGAT GAATTGATGT 89895 .......... .......... .......... .......... .......... .......... 221 ATAACCAGTG CTCTCTGATC TAACATACAG TCTAGTTGTC CTCCCATATA AGTTAGTATA 89835 .......... .......... .......... .......... .......... .......... 221 GCTTAACTGT GATCTATTTG TGACTTTATG AGAACCTTGA GTATGTTTTA GATGTTGGTT 89775 .......... .......... .......... .......... .......... .......... 221 GTGCTCAAAA GGCGTAATTT TTATCACTGT TTAAATTTCA TGAATATCCG AGGTGGTTTG 89715 .......... .......... .......... .......... .......... .......... 221 ACTACAAAGA GGAGATATAT TGATGGATCT GATAATGTAG CACAATTTCT GCAGCAAAAT 89655 .......... .......... .......... .......... .......... .......... 221 ATGTTTGTTT GCTTTAGTTG GTTCTGTTTC CCTTTATTTA TTCTTTTGTT CTTGTGTATC 89595 .......... .......... .......... .......... .......... .......... 221 TTCTGATGTG ACCTACTGAG ATTGGAACCT ATGAGGGGGA AATGCTAAAC CCTATCACAT 89535 .......... .......... .......... .......... .......... .......... 221 TTTCTAGATG GGGTAAAAGG TTAGAAAAAT GGCGCTTGAG GAAGAACAAA TTGAACAACA 89475 .......... .......... .......... .......... .......... .......... 221 TTTCGTCCTT AGTTGAAAAG GGACTAACAC TTTGAACCTG AAAATACAGT TCAACTAATT 89415 .......... .......... .......... .......... .......... .......... 221 TTTCAGTTAA TTGGTGTAAG CCTTCAATCT ACAAAGGTAC ACTTGATTCA TGTTATTCTT 89355 .......... .......... .......... .......... .......... .......... 221 CTTGTGTTGT GCTCAAAATC TCTATACATT AGTATCTTGC AGCAGAATAC TCCCGAAAGC 89295 .......... .......... .......... .......... .......... .......... 221 AAAGAGGAGG AAAGATTCAA TCAATTTTAT TAATCCTTAG TCCCTACAAG TTCTTTCATT 89235 .......... .......... .......... .......... .......... .......... 221 GATTTCATCG TGTTTTACTG TTGGTAGGAG TTGATGCCAG GAGGTGTAAA TTCCCCTGTC 89175 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GAG TTGATGCCAG GAGGTGTAAA TTCCCCTGTC 254 CGTGCTTTCA AGTCAGTTGG CGGACAACCT ATCATTATTG ACTCCGTGAA GGGCTCTCGT 89115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGCTTTCA AGTCAGTTGG CGGACAACCT ATCATTATTG ACTCCGTGAA GGGCTCTCGT 314 ATGCGGGACA TAGATGGTAA CGAGTACATT GACTATGTCG GATCATGGGG ACCAGCTATA 89055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCGGGACA TAGATGGTAA CGAGTACATT GACTATGTCG GATCATGGGG ACCAGCTATA 374 ATTGGTCATG CGGATGATGA GGTTTAGTTC TCTACTCTCA ACTCTATGTT AAGCTTGAAA 88995 |||||||||| |||||||||| ATTGGTCATG CGGATGATGA A......... .......... .......... .......... 395 TTTCATTAGT CACTGTGCAT TTATTTGGCC TGGCTTGTTA GTAATAAGTT ATTACTGCAT 88935 .......... .......... .......... .......... .......... .......... 395 CTACTTGCTT TGTATTTGGT AACATGTTTT AGAAACTCCG TCTTAAAGCT GCTTCTTGTC 88875 .......... .......... .......... .......... .......... .......... 395 TTTGCTCTCA TTACAGGTTC GGTAAGTTTT GTATTTTGGA AGAACCATTG AATTACTTTG 88815 .......... .......... .......... .......... .......... .......... 395 GCCTTAAATG ACTATTTATG ACTACGAAGA ACATATGGTT TAAGTTTTTA ATCTTAACCT 88755 .......... .......... .......... .......... .......... .......... 395 GAGACCTCAT GGTGCTTGAC CCATTTATTG ACCGCTAGGC CACACCCTTG GGTGCTTCTT 88695 .......... .......... .......... .......... .......... .......... 395 TTGTTCTTTT TCTTAAATAG AAATTGGTAT TTGACGTCCA TCTTGTAGAC GGTTCCTGTG 88635 .......... .......... .......... .......... .......... .......... 395 ATAGTGTATA AATCAGTATT ATTAAAAGTT GACTGATGAG CATTTCTTAA CTGGGAACGA 88575 .......... .......... .......... .......... .......... .......... 395 TTTGGTTGGA GGTTGAGTGA ACTGTGTAGG TTATTGGGTG GATGAAGTGA AAACTCAAGT 88515 .......... .......... .......... .......... .......... .......... 395 AGAACATGTC TACAAGTGGA TTCTCTTGAG TTCAGCTTTA AGAACTATTG CGCAAGACAC 88455 .......... .......... .......... .......... .......... .......... 395 CTCAAAATCT TCTATGCCCC TCTGTCTTAT TACACTGTAC TATGGAAACA TAGTTGATTA 88395 .......... .......... .......... .......... .......... .......... 395 AAAGTGTCAG TACTGTAGGT GGGGAGAGTC CTTTTTGGCA TGAAAGGTTT AGGTACGAAC 88335 .......... .......... .......... .......... .......... .......... 395 AAGAGAGGGA AAGTTTTTAA TGCTTTTTCC ATTGTTTTTG AGGCAATAAT CTTGGTATGA 88275 .......... .......... .......... .......... .......... .......... 395 CCTTTCCCTG CAGGTGCTAG CAGCATTGGC TGAAACAATG AAGAAAGGAA CGAGTTTCGG 88215 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTGCTAG CAGCATTGGC TGAAACAATG AAGAAAGGAA CGAGTTTCGG 442 TGCTCCATGT CTCCTTG 88198 |||||||||| ||||||| TGCTCCATGT CTCCTTG 459 hqPGS_C04HBa0127E11.1-_SGN-E317415+ (90794 90574,89207 89034,88261 88198) ******************************************************************************** EST sequence 117 +strand 449 n (File: SGN-E289808+) 1 TCAAGAATAC TCAGAGAGAG AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT 61 AGGACTTTCA TGGCCATCAA AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC 121 ATCTCACCGT CGATGCAACC CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC 181 CTCAGTTGAT GAAAAGAAGA AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA 241 AGCCAAGGAG TTGATGCCAG GAGGTGTAAA TTCCCCTGTC CGTGCTTTCA AGTCAGTTGG 301 CGGACAACCT ATCATTATTG ACTCCGTGAA GGGCTCTCGT ATGCGGGACA TAGATGGTAA 361 CGAGTACATT GACTATGTCG GATCATGGGG ACCAGCTATA ATTGGTCATG CGGATGATGA 421 GGTGCTAGCA GCATTGGCTG AAACAATGA Predicted gene structure (within gDNA segment 91420 to 87624): Exon 1 90820 90574 ( 247 n); cDNA 1 247 ( 247 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 248 421 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 0) Exon 3 88261 88234 ( 28 n); cDNA 422 449 ( 28 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E289808+ 1.000 449 1.000 C PGS_C04HBa0127E11.1-_SGN-E289808+ (90820 90574,89207 89034,88261 88234) Alignment (genomic DNA sequence = upper lines): TCAAGAATAC TCAGAGAGAG AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT 90761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAATAC TCAGAGAGAG AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT 60 AGGACTTTCA TGGCCATCAA AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC 90701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACTTTCA TGGCCATCAA AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC 120 ATCTCACCGT CGATGCAACC CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC 90641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCACCGT CGATGCAACC CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC 180 CTCAGTTGAT GAAAAGAAGA AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA 90581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGTTGAT GAAAAGAAGA AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA 240 AGCCAAGGTA ATCAAAATTC AGTTTTTTTT TTTTTTTTTG GCTTCATGTT CATACAATTC 90521 ||||||| AGCCAAG... .......... .......... .......... .......... .......... 247 AATTTGGTGA TGTTATTCAG TACTCATTAG ACAAAAGTAA GGTTCAAAAA TCCATAGACT 90461 .......... .......... .......... .......... .......... .......... 247 CAAAATCCTG GATCCACCTC ATCTTCTAGA TAAGGTGGTG ATAATATTCA AGATTATGGA 90401 .......... .......... .......... .......... .......... .......... 247 TATTGTTCAG TGTTTGTTCT TTGATTTGAA GTGTATTGGT CAAGATTTGA TTTTTCATGC 90341 .......... .......... .......... .......... .......... .......... 247 TAATATTGCT GGTAAAATTG GAGGGGGTTG TCATGTGACC AGGAGGTTAT GGGTTCGAGC 90281 .......... .......... .......... .......... .......... .......... 247 TGTAGGTACA GCCTTTTGCA GAAATGCAGG TTAAGGCTGC ATACTATAGA CCCTTGTGGT 90221 .......... .......... .......... .......... .......... .......... 247 CCGGCCCTTC CACCCCAAGC ATAGTGGGAG CTTAAAATTG CTAGCTTTAA GATATTTGGG 90161 .......... .......... .......... .......... .......... .......... 247 TTGGATGAAG AGAAGAAAAA GGATATGTTG ATTTGATAAA GTTGGTGTTA GGTGTACAAA 90101 .......... .......... .......... .......... .......... .......... 247 CAAAGTCTTA GGCTCTGAGC TGAAAAGAAA GTAAAAGACT TTGTAATGAT ATTGTTAATG 90041 .......... .......... .......... .......... .......... .......... 247 GTGTGAGGCT TTTTTTGGAG AAAACCGTGT GGATTTGGTT TTAGTCCAAA GTGGACAATA 89981 .......... .......... .......... .......... .......... .......... 247 CTGCACCATG TTTAAAGTAT CTTTGGGTTG TTTTAGCCTA ACAGTTGGTT CACCTGCCAT 89921 .......... .......... .......... .......... .......... .......... 247 TTTGGCATCT GCTGATGAAT TGATGTATAA CCAGTGCTCT CTGATCTAAC ATACAGTCTA 89861 .......... .......... .......... .......... .......... .......... 247 GTTGTCCTCC CATATAAGTT AGTATAGCTT AACTGTGATC TATTTGTGAC TTTATGAGAA 89801 .......... .......... .......... .......... .......... .......... 247 CCTTGAGTAT GTTTTAGATG TTGGTTGTGC TCAAAAGGCG TAATTTTTAT CACTGTTTAA 89741 .......... .......... .......... .......... .......... .......... 247 ATTTCATGAA TATCCGAGGT GGTTTGACTA CAAAGAGGAG ATATATTGAT GGATCTGATA 89681 .......... .......... .......... .......... .......... .......... 247 ATGTAGCACA ATTTCTGCAG CAAAATATGT TTGTTTGCTT TAGTTGGTTC TGTTTCCCTT 89621 .......... .......... .......... .......... .......... .......... 247 TATTTATTCT TTTGTTCTTG TGTATCTTCT GATGTGACCT ACTGAGATTG GAACCTATGA 89561 .......... .......... .......... .......... .......... .......... 247 GGGGGAAATG CTAAACCCTA TCACATTTTC TAGATGGGGT AAAAGGTTAG AAAAATGGCG 89501 .......... .......... .......... .......... .......... .......... 247 CTTGAGGAAG AACAAATTGA ACAACATTTC GTCCTTAGTT GAAAAGGGAC TAACACTTTG 89441 .......... .......... .......... .......... .......... .......... 247 AACCTGAAAA TACAGTTCAA CTAATTTTTC AGTTAATTGG TGTAAGCCTT CAATCTACAA 89381 .......... .......... .......... .......... .......... .......... 247 AGGTACACTT GATTCATGTT ATTCTTCTTG TGTTGTGCTC AAAATCTCTA TACATTAGTA 89321 .......... .......... .......... .......... .......... .......... 247 TCTTGCAGCA GAATACTCCC GAAAGCAAAG AGGAGGAAAG ATTCAATCAA TTTTATTAAT 89261 .......... .......... .......... .......... .......... .......... 247 CCTTAGTCCC TACAAGTTCT TTCATTGATT TCATCGTGTT TTACTGTTGG TAGGAGTTGA 89201 ||||||| .......... .......... .......... .......... .......... ...GAGTTGA 254 TGCCAGGAGG TGTAAATTCC CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA CAACCTATCA 89141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAGGAGG TGTAAATTCC CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA CAACCTATCA 314 TTATTGACTC CGTGAAGGGC TCTCGTATGC GGGACATAGA TGGTAACGAG TACATTGACT 89081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGACTC CGTGAAGGGC TCTCGTATGC GGGACATAGA TGGTAACGAG TACATTGACT 374 ATGTCGGATC ATGGGGACCA GCTATAATTG GTCATGCGGA TGATGAGGTT TAGTTCTCTA 89021 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATGTCGGATC ATGGGGACCA GCTATAATTG GTCATGCGGA TGATGAG... .......... 421 CTCTCAACTC TATGTTAAGC TTGAAATTTC ATTAGTCACT GTGCATTTAT TTGGCCTGGC 88961 .......... .......... .......... .......... .......... .......... 421 TTGTTAGTAA TAAGTTATTA CTGCATCTAC TTGCTTTGTA TTTGGTAACA TGTTTTAGAA 88901 .......... .......... .......... .......... .......... .......... 421 ACTCCGTCTT AAAGCTGCTT CTTGTCTTTG CTCTCATTAC AGGTTCGGTA AGTTTTGTAT 88841 .......... .......... .......... .......... .......... .......... 421 TTTGGAAGAA CCATTGAATT ACTTTGGCCT TAAATGACTA TTTATGACTA CGAAGAACAT 88781 .......... .......... .......... .......... .......... .......... 421 ATGGTTTAAG TTTTTAATCT TAACCTGAGA CCTCATGGTG CTTGACCCAT TTATTGACCG 88721 .......... .......... .......... .......... .......... .......... 421 CTAGGCCACA CCCTTGGGTG CTTCTTTTGT TCTTTTTCTT AAATAGAAAT TGGTATTTGA 88661 .......... .......... .......... .......... .......... .......... 421 CGTCCATCTT GTAGACGGTT CCTGTGATAG TGTATAAATC AGTATTATTA AAAGTTGACT 88601 .......... .......... .......... .......... .......... .......... 421 GATGAGCATT TCTTAACTGG GAACGATTTG GTTGGAGGTT GAGTGAACTG TGTAGGTTAT 88541 .......... .......... .......... .......... .......... .......... 421 TGGGTGGATG AAGTGAAAAC TCAAGTAGAA CATGTCTACA AGTGGATTCT CTTGAGTTCA 88481 .......... .......... .......... .......... .......... .......... 421 GCTTTAAGAA CTATTGCGCA AGACACCTCA AAATCTTCTA TGCCCCTCTG TCTTATTACA 88421 .......... .......... .......... .......... .......... .......... 421 CTGTACTATG GAAACATAGT TGATTAAAAG TGTCAGTACT GTAGGTGGGG AGAGTCCTTT 88361 .......... .......... .......... .......... .......... .......... 421 TTGGCATGAA AGGTTTAGGT ACGAACAAGA GAGGGAAAGT TTTTAATGCT TTTTCCATTG 88301 .......... .......... .......... .......... .......... .......... 421 TTTTTGAGGC AATAATCTTG GTATGACCTT TCCCTGCAGG TGCTAGCAGC ATTGGCTGAA 88241 | |||||||||| |||||||||| .......... .......... .......... .........G TGCTAGCAGC ATTGGCTGAA 442 ACAATGA 88234 ||||||| ACAATGA 449 hqPGS_C04HBa0127E11.1-_SGN-E289808+ (90820 90574,89207 89034,88261 88234) ******************************************************************************** EST sequence 103 +strand 421 n (File: SGN-E324578+) 1 GAGTTGGTAA CAATGGCTGC TGTAAATGGT GGAGGACTTT CATGGCCATC AAAATTGACC 61 AAAAATCAAA CACCCAAATG GGGTTTTTCT CCATCTCACC GTCGATGCAA CCCATCTTCT 121 TCTTCTTCTT CTGCAACCAT TAGAATGACA GCCTCAGTTG ATGAAAAGAA GAAAACGTTC 181 ACACTTGAGA AGTCTGAAGA AGCTTTCAGC AAAGCCAAAG AGTTGATGCC AGGAGGTGTA 241 AATTCCCCTG TCCGTGCTTT CAAGTCAGTT GGCGGACAAC CTATCATTAT TGACTCCGTG 301 AAAGGCTCTC GTATGCGGGA CATAGATGGT AACGAGTACA TTGACTATGT CGGATCATGG 361 GGACCAGCTA TAATTGGTCA TGCTGATGAT GAGGTGCTAG CAGCATTGGC TGAAACAATG 421 A Predicted gene structure (within gDNA segment 91392 to 87624): Exon 1 90792 90574 ( 219 n); cDNA 1 219 ( 219 n); score: 0.991 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 220 393 ( 174 n); score: 0.989 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 0.98), Pa: 0.998 (s: 0) Exon 3 88261 88234 ( 28 n); cDNA 394 421 ( 28 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E324578+ 0.990 421 1.000 C PGS_C04HBa0127E11.1-_SGN-E324578+ (90792 90574,89207 89034,88261 88234) Alignment (genomic DNA sequence = upper lines): GAGTTGGTAA CAATGGCTGC TGTAAATGGT GTAGGACTTT CATGGCCATC AAAATTGACC 90733 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| GAGTTGGTAA CAATGGCTGC TGTAAATGGT GGAGGACTTT CATGGCCATC AAAATTGACC 60 AAAAATCAAA CACCCAAATG GGGTTTTTCT CCATCTCACC GTCGATGCAA CCCATCTTCT 90673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATCAAA CACCCAAATG GGGTTTTTCT CCATCTCACC GTCGATGCAA CCCATCTTCT 120 TCTTCTTCTT CTGCAACCAT TAGAATGACA GCCTCAGTTG ATGAAAAGAA GAAAACGTTC 90613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCTT CTGCAACCAT TAGAATGACA GCCTCAGTTG ATGAAAAGAA GAAAACGTTC 180 ACACTTGAGA AGTCTGAAGA AGCTTTCAGC AAAGCCAAGG TAATCAAAAT TCAGTTTTTT 90553 |||||||||| |||||||||| |||||||||| |||||||| ACACTTGAGA AGTCTGAAGA AGCTTTCAGC AAAGCCAAA. .......... .......... 219 TTTTTTTTTT TGGCTTCATG TTCATACAAT TCAATTTGGT GATGTTATTC AGTACTCATT 90493 .......... .......... .......... .......... .......... .......... 219 AGACAAAAGT AAGGTTCAAA AATCCATAGA CTCAAAATCC TGGATCCACC TCATCTTCTA 90433 .......... .......... .......... .......... .......... .......... 219 GATAAGGTGG TGATAATATT CAAGATTATG GATATTGTTC AGTGTTTGTT CTTTGATTTG 90373 .......... .......... .......... .......... .......... .......... 219 AAGTGTATTG GTCAAGATTT GATTTTTCAT GCTAATATTG CTGGTAAAAT TGGAGGGGGT 90313 .......... .......... .......... .......... .......... .......... 219 TGTCATGTGA CCAGGAGGTT ATGGGTTCGA GCTGTAGGTA CAGCCTTTTG CAGAAATGCA 90253 .......... .......... .......... .......... .......... .......... 219 GGTTAAGGCT GCATACTATA GACCCTTGTG GTCCGGCCCT TCCACCCCAA GCATAGTGGG 90193 .......... .......... .......... .......... .......... .......... 219 AGCTTAAAAT TGCTAGCTTT AAGATATTTG GGTTGGATGA AGAGAAGAAA AAGGATATGT 90133 .......... .......... .......... .......... .......... .......... 219 TGATTTGATA AAGTTGGTGT TAGGTGTACA AACAAAGTCT TAGGCTCTGA GCTGAAAAGA 90073 .......... .......... .......... .......... .......... .......... 219 AAGTAAAAGA CTTTGTAATG ATATTGTTAA TGGTGTGAGG CTTTTTTTGG AGAAAACCGT 90013 .......... .......... .......... .......... .......... .......... 219 GTGGATTTGG TTTTAGTCCA AAGTGGACAA TACTGCACCA TGTTTAAAGT ATCTTTGGGT 89953 .......... .......... .......... .......... .......... .......... 219 TGTTTTAGCC TAACAGTTGG TTCACCTGCC ATTTTGGCAT CTGCTGATGA ATTGATGTAT 89893 .......... .......... .......... .......... .......... .......... 219 AACCAGTGCT CTCTGATCTA ACATACAGTC TAGTTGTCCT CCCATATAAG TTAGTATAGC 89833 .......... .......... .......... .......... .......... .......... 219 TTAACTGTGA TCTATTTGTG ACTTTATGAG AACCTTGAGT ATGTTTTAGA TGTTGGTTGT 89773 .......... .......... .......... .......... .......... .......... 219 GCTCAAAAGG CGTAATTTTT ATCACTGTTT AAATTTCATG AATATCCGAG GTGGTTTGAC 89713 .......... .......... .......... .......... .......... .......... 219 TACAAAGAGG AGATATATTG ATGGATCTGA TAATGTAGCA CAATTTCTGC AGCAAAATAT 89653 .......... .......... .......... .......... .......... .......... 219 GTTTGTTTGC TTTAGTTGGT TCTGTTTCCC TTTATTTATT CTTTTGTTCT TGTGTATCTT 89593 .......... .......... .......... .......... .......... .......... 219 CTGATGTGAC CTACTGAGAT TGGAACCTAT GAGGGGGAAA TGCTAAACCC TATCACATTT 89533 .......... .......... .......... .......... .......... .......... 219 TCTAGATGGG GTAAAAGGTT AGAAAAATGG CGCTTGAGGA AGAACAAATT GAACAACATT 89473 .......... .......... .......... .......... .......... .......... 219 TCGTCCTTAG TTGAAAAGGG ACTAACACTT TGAACCTGAA AATACAGTTC AACTAATTTT 89413 .......... .......... .......... .......... .......... .......... 219 TCAGTTAATT GGTGTAAGCC TTCAATCTAC AAAGGTACAC TTGATTCATG TTATTCTTCT 89353 .......... .......... .......... .......... .......... .......... 219 TGTGTTGTGC TCAAAATCTC TATACATTAG TATCTTGCAG CAGAATACTC CCGAAAGCAA 89293 .......... .......... .......... .......... .......... .......... 219 AGAGGAGGAA AGATTCAATC AATTTTATTA ATCCTTAGTC CCTACAAGTT CTTTCATTGA 89233 .......... .......... .......... .......... .......... .......... 219 TTTCATCGTG TTTTACTGTT GGTAGGAGTT GATGCCAGGA GGTGTAAATT CCCCTGTCCG 89173 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GAGTT GATGCCAGGA GGTGTAAATT CCCCTGTCCG 254 TGCTTTCAAG TCAGTTGGCG GACAACCTAT CATTATTGAC TCCGTGAAGG GCTCTCGTAT 89113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGCTTTCAAG TCAGTTGGCG GACAACCTAT CATTATTGAC TCCGTGAAAG GCTCTCGTAT 314 GCGGGACATA GATGGTAACG AGTACATTGA CTATGTCGGA TCATGGGGAC CAGCTATAAT 89053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGGACATA GATGGTAACG AGTACATTGA CTATGTCGGA TCATGGGGAC CAGCTATAAT 374 TGGTCATGCG GATGATGAGG TTTAGTTCTC TACTCTCAAC TCTATGTTAA GCTTGAAATT 88993 ||||||||| ||||||||| TGGTCATGCT GATGATGAG. .......... .......... .......... .......... 393 TCATTAGTCA CTGTGCATTT ATTTGGCCTG GCTTGTTAGT AATAAGTTAT TACTGCATCT 88933 .......... .......... .......... .......... .......... .......... 393 ACTTGCTTTG TATTTGGTAA CATGTTTTAG AAACTCCGTC TTAAAGCTGC TTCTTGTCTT 88873 .......... .......... .......... .......... .......... .......... 393 TGCTCTCATT ACAGGTTCGG TAAGTTTTGT ATTTTGGAAG AACCATTGAA TTACTTTGGC 88813 .......... .......... .......... .......... .......... .......... 393 CTTAAATGAC TATTTATGAC TACGAAGAAC ATATGGTTTA AGTTTTTAAT CTTAACCTGA 88753 .......... .......... .......... .......... .......... .......... 393 GACCTCATGG TGCTTGACCC ATTTATTGAC CGCTAGGCCA CACCCTTGGG TGCTTCTTTT 88693 .......... .......... .......... .......... .......... .......... 393 GTTCTTTTTC TTAAATAGAA ATTGGTATTT GACGTCCATC TTGTAGACGG TTCCTGTGAT 88633 .......... .......... .......... .......... .......... .......... 393 AGTGTATAAA TCAGTATTAT TAAAAGTTGA CTGATGAGCA TTTCTTAACT GGGAACGATT 88573 .......... .......... .......... .......... .......... .......... 393 TGGTTGGAGG TTGAGTGAAC TGTGTAGGTT ATTGGGTGGA TGAAGTGAAA ACTCAAGTAG 88513 .......... .......... .......... .......... .......... .......... 393 AACATGTCTA CAAGTGGATT CTCTTGAGTT CAGCTTTAAG AACTATTGCG CAAGACACCT 88453 .......... .......... .......... .......... .......... .......... 393 CAAAATCTTC TATGCCCCTC TGTCTTATTA CACTGTACTA TGGAAACATA GTTGATTAAA 88393 .......... .......... .......... .......... .......... .......... 393 AGTGTCAGTA CTGTAGGTGG GGAGAGTCCT TTTTGGCATG AAAGGTTTAG GTACGAACAA 88333 .......... .......... .......... .......... .......... .......... 393 GAGAGGGAAA GTTTTTAATG CTTTTTCCAT TGTTTTTGAG GCAATAATCT TGGTATGACC 88273 .......... .......... .......... .......... .......... .......... 393 TTTCCCTGCA GGTGCTAGCA GCATTGGCTG AAACAATGA 88234 ||||||||| |||||||||| ||||||||| .......... .GTGCTAGCA GCATTGGCTG AAACAATGA 421 hqPGS_C04HBa0127E11.1-_SGN-E324578+ (90792 90574,89207 89034,88261 88234) ******************************************************************************** EST sequence 115 +strand 422 n (File: SGN-E291007+) 1 TTGCCACCCT CGGTCTTCCT GACTCTCCGG GAGTTCCAAA GGCAGCTACT ATCGATACTC 61 TGACCGCACC TTACAATGAC ATTTCTGCTG TTGAGAGCCT CTTTGAGGAG CACAAAGGAG 121 AAATAGCCGC TGTAATTCTC GAGCCTGTAG TCGGAAATGC TGGCTTCATC CCACCTAAGC 181 TAGAATTTCT TGCTGCCATT CGCAAGATCA CCAAAGAGAA TGATGCACTT CTTATTTTCG 241 ACGAAGTCAT GACTGGATTT AGATTGGCAT ATGGCGGTGC TCAAGAGTAT TTTGGAATAA 301 CTCCAGATTT GACAACACTC GGGAAGATTA TTGGCGGTGG CTTGCCAGTA GGTGCTTACG 361 GAGGAAGACG GGATATAATG GAGATGGTAG CACCTGCAGG ACCAATGTAT CAAGCTGGCA 421 CC Predicted gene structure (within gDNA segment 88602 to 86971): Exon 1 88002 87581 ( 422 n); cDNA 1 422 ( 422 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-E291007+ 1.000 422 1.000 C PGS_C04HBa0127E11.1-_SGN-E291007+ (88002 87581) Alignment (genomic DNA sequence = upper lines): TTGCCACCCT CGGTCTTCCT GACTCTCCGG GAGTTCCAAA GGCAGCTACT ATCGATACTC 87943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCACCCT CGGTCTTCCT GACTCTCCGG GAGTTCCAAA GGCAGCTACT ATCGATACTC 60 TGACCGCACC TTACAATGAC ATTTCTGCTG TTGAGAGCCT CTTTGAGGAG CACAAAGGAG 87883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCGCACC TTACAATGAC ATTTCTGCTG TTGAGAGCCT CTTTGAGGAG CACAAAGGAG 120 AAATAGCCGC TGTAATTCTC GAGCCTGTAG TCGGAAATGC TGGCTTCATC CCACCTAAGC 87823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAGCCGC TGTAATTCTC GAGCCTGTAG TCGGAAATGC TGGCTTCATC CCACCTAAGC 180 TAGAATTTCT TGCTGCCATT CGCAAGATCA CCAAAGAGAA TGATGCACTT CTTATTTTCG 87763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAATTTCT TGCTGCCATT CGCAAGATCA CCAAAGAGAA TGATGCACTT CTTATTTTCG 240 ACGAAGTCAT GACTGGATTT AGATTGGCAT ATGGCGGTGC TCAAGAGTAT TTTGGAATAA 87703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGTCAT GACTGGATTT AGATTGGCAT ATGGCGGTGC TCAAGAGTAT TTTGGAATAA 300 CTCCAGATTT GACAACACTC GGGAAGATTA TTGGCGGTGG CTTGCCAGTA GGTGCTTACG 87643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCAGATTT GACAACACTC GGGAAGATTA TTGGCGGTGG CTTGCCAGTA GGTGCTTACG 360 GAGGAAGACG GGATATAATG GAGATGGTAG CACCTGCAGG ACCAATGTAT CAAGCTGGCA 87583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAGACG GGATATAATG GAGATGGTAG CACCTGCAGG ACCAATGTAT CAAGCTGGCA 420 CC 87581 || CC 422 hqPGS_C04HBa0127E11.1-_SGN-E291007+ (88002 87581) ******************************************************************************** EST sequence 132 +strand 542 n (File: SGN-E265387+) 1 TTCGGTGCTC CATGTCTCCT TGAAAATACA CTGGCAGAGA TGGTTATTTC AGCTGTTGCA 61 AGCATAGAAA TGGTTCGATT TGTCAACTCT GGTACAGAAG CATGTATGGG AGTACTACGG 121 CTGGCTCGTG CTTTCACTTG CCGTCCTAAG ATCATCAAAT TCGAGGGTTG TTACCATGGT 181 CATGCTGATC CATTTCTTGT TAAAGCAGGC AGTGGCGTTG CCACCCTCGG TCTTCCTGAC 241 TCTCCGGGAG TTCCAAAGGC AGCTACTATC GATACTCTGA CCGCACCTTA CAATGACATT 301 TCTGCTGTTG AGAGCCTCTT TGAGGAGCAC AAAGGAGAAA TAGCCGCTGT AATTCTCGAG 361 CCTGTAGTCG GGAAATGCTG GCTTCATCCC ACCTAAGCTA GAATTTCTTG CTGCCATTCG 421 CAAGATCACC AAAGAGAATG ATGCACTTCT TATTTTCGAC GAAGTCATGA CTGGATTTAG 481 ATTGGCATAT GGCGGTGCTC AAGAGTATTT TGGAATAACT CCAGATTTGA CAACACTCGG 541 GA Predicted gene structure (within gDNA segment 88819 to 87069): Exon 1 88219 87679 ( 541 n); cDNA 1 542 ( 542 n); score: 0.994 MATCH C04HBa0127E11.1- SGN-E265387+ 0.994 541 0.998 C PGS_C04HBa0127E11.1-_SGN-E265387+ (88219 87679) Alignment (genomic DNA sequence = upper lines): TTCGGTGCTC CATGTCTCCT TGAAAATACA CTGGCAGAGA TGGTTATTTC AGCTGTTCCA 88160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTCGGTGCTC CATGTCTCCT TGAAAATACA CTGGCAGAGA TGGTTATTTC AGCTGTTGCA 60 AGCATAGAAA TGGTTCGATT TGTCAACTCT GGTACAGAAG CATGTATGGG AGTACTACGG 88100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATAGAAA TGGTTCGATT TGTCAACTCT GGTACAGAAG CATGTATGGG AGTACTACGG 120 CTGGCTCGTG CTTTCACTTG CCGTCCTAAG ATCATCAAAT TCGAGGGTTG TTACCATGGT 88040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCTCGTG CTTTCACTTG CCGTCCTAAG ATCATCAAAT TCGAGGGTTG TTACCATGGT 180 CATGCTGATC CATTTCTTGT TAAAGCAGGC AGTGGCGTTG CCACCCTCGG TCTTCCTGAC 87980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCTGATC CATTTCTTGT TAAAGCAGGC AGTGGCGTTG CCACCCTCGG TCTTCCTGAC 240 TCTCCGGGAG TTCCAAAGGC AGCTACTATC GATACTCTGA CCGCACCTTA CAATGACATT 87920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCGGGAG TTCCAAAGGC AGCTACTATC GATACTCTGA CCGCACCTTA CAATGACATT 300 TCTGCTGTTG AGAGCCTCTT TGAGGAGCAC AAAGGAGAAA TAGCCGCTGT AATTCTCGAG 87860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTGTTG AGAGCCTCTT TGAGGAGCAC AAAGGAGAAA TAGCCGCTGT AATTCTCGAG 360 CCTGTAGTC- GGAAATGCTG GCTTCATCCC ACCTAAGCTA GAATTTCTTG CTGCCATTCG 87801 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTAGTCG GGAAATGCTG GCTTCATCCC ACCTAAGCTA GAATTTCTTG CTGCCATTCG 420 CAAGATCACC AAAGAGAATG ATGCACTTCT TATTTTCGAC GAAGTCATGA CTGGATTTAG 87741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATCACC AAAGAGAATG ATGCACTTCT TATTTTCGAC GAAGTCATGA CTGGATTTAG 480 ATTGGCATAT GGCGGTGCTC AAGAGTATTT TGGAATAACT CCAGATTTGA CAACACTCGG 87681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGCATAT GGCGGTGCTC AAGAGTATTT TGGAATAACT CCAGATTTGA CAACACTCGG 540 GA 87679 || GA 542 hqPGS_C04HBa0127E11.1-_SGN-E265387+ (88219 87679) ******************************************************************************** EST sequence 149 +strand 174 n (File: SGN-E283308+) 1 TTTTTAACAA TGGCTGCTGC TAATGGAGTA TGACTTTCAT GGCCATCAAA ATTGACCAAA 61 AATCAAACAC CCAAGATGGG AGTTTTTCTC CATCTCACCG TCGATGCAAC CCATCTTCTT 121 CTTCTTCTTC TGCAACCATT AGAATGACAG CCTCAGTTGA TGAAAAGAAG AAAA Predicted gene structure (within gDNA segment 91668 to 90008): Exon 1 90789 90618 ( 172 n); cDNA 1 174 ( 174 n); score: 0.936 MATCH C04HBa0127E11.1- SGN-E283308+ 0.936 172 0.989 C PGS_C04HBa0127E11.1-_SGN-E283308+ (90789 90618) Alignment (genomic DNA sequence = upper lines): TTGGTAACAA TGGCTGCTGT AAATGGTGTA GGACTTTCAT GGCCATCAAA ATTGACCAAA 90730 || |||||| ||||||||| ||||| ||| ||||||||| |||||||||| |||||||||| TTTTTAACAA TGGCTGCTGC TAATGGAGTA TGACTTTCAT GGCCATCAAA ATTGACCAAA 60 AATCAAACAC CCAA-ATGGG -GTTTTTCTC CATCTCACCG TCGATGCAAC CCATCTTCTT 90672 |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| |||||||||| AATCAAACAC CCAAGATGGG AGTTTTTCTC CATCTCACCG TCGATGCAAC CCATCTTCTT 120 CTTCTTCTTC TGCAACCATT AGAATGACAG CCTCAGTTGA TGAAAAGAAG AAAA 90618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CTTCTTCTTC TGCAACCATT AGAATGACAG CCTCAGTTGA TGAAAAGAAG AAAA 174 hqPGS_C04HBa0127E11.1-_SGN-E283308+ (90789 90618) Total number of EST alignments reported: 153 ________________________________________________________________________________ Predicted gene locations (16) in segment 1 to 95845: PGL 1 (- strand): 9140 3011 AGS-1 (9140 8057,7956 7620,5558 4953,3990 3842,3563 3434,3349 3011) SCR (e 1.000 d 0.991 a 0.894,e 1.000 d 0.989 a 0.989,e 1.000 d 0.994 a 0.000,e 1.000 d 0.986 a 0.997,e 1.000 d 0.930 a 0.814,e 1.000) Exon 1 9140 8057 (1084 n); score: 1.000 Intron 1 8056 7957 ( 100 n); Pd: 0.991 Pa: 0.894 Exon 2 7956 7620 ( 337 n); score: 1.000 Intron 2 7619 5559 (2061 n); Pd: 0.989 Pa: 0.989 Exon 3 5558 4953 ( 606 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 Pa: 0.000 Exon 4 3990 3842 ( 149 n); score: 1.000 Intron 4 3841 3564 ( 278 n); Pd: 0.986 Pa: 0.997 Exon 5 3563 3434 ( 130 n); score: 1.000 Intron 5 3433 3350 ( 84 n); Pd: 0.930 Pa: 0.814 Exon 6 3349 3011 ( 339 n); score: 1.000 PGS (5032 4953,3990 3842,3563 3434,3349 3011) SGN-E369678- PGS (3530 3434,3349 3017) SGN-E220147- PGS (5410 4953,3990 3842,3563 3434,3349 3294) SGN-E214148+ PGS (8084 8057,7956 7620,5558 5303) SGN-E252288+ PGS (8112 8057,7956 7620,5558 5458) SGN-E200964+ PGS (8713 8057,7956 7942) SGN-E335551+ PGS (8824 8123) SGN-E214143+ PGS (9140 8587) SGN-E317991+ PGS (9132 8593) SGN-E317878+ 3-phase translation of AGS-1 (-strand): . . . . . . 9140 ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGT T S N F G S - F - L F V N E F L L C C C Q V I L E V D F D C L - M S S F F V V V K - F W K L I L I V C K - V P S L L L . . . . . . 9080 TTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATT F V A V - I - G G V L S A N E F F N F I L L L Y E Y K E E C F Q L M N F L I L F F C C C M N I R R S A F S - - I F - F Y . . . . . . 9020 TTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAG F C C K K K K S N F G K W M F T - G E K F A V K K K R V T L E N G C L L K V R R F L L - K K K E - L W K M D V Y L R - E . . . . . . 8960 AGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTG S F K L M N - F C L L K N E R E E I N L V L S L - T D F V C - K M K E K K - I W E F - A Y E L I L F V E K - K R R N K F . . . . . . 8900 GAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGG E I E F - L R R R F S A Y E T D F - - R K L N F S - G E D F Q L M K R I F S E G G N - I L V K E K I F S L - N G F L V K . . . . . . 8840 AGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTC R G I Y L S N T L I A L K R A E L S Y L E E F I C Q I H - - P - K E Q N F R I S E R N L F V K Y I D S L K K S R T F V S . . . . . . 8780 TAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAA - R W K - S Y L N P N Y D D F N L K K Q N G G N N L T L I Q T M M I S I - R N K L T V E I I L P - S K L - - F Q F K E T . . . . . . 8720 ATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACA I L C S I F D L L I L R K H P L - L F T F C V L F L I Y S F - G S I L S S C L Q N S V F Y F - F T H F K E A S S L V V Y . . . . . . 8660 GCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATT A K I L - L M L - L K D V A L D E V C I L K F C N - C Y S L K M - L W M K F A L S - N S V T D A I A - R C S F G - S L H . . . . . . 8600 AGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCA S D D H I V P H P S C E H A N E V S L P A M I I - C H I L V V N M P M K F L S Q - R - S Y S A T S - L - T C Q - S F S P . . . . . . 8540 GACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGC D - - P - E T P V - N N W F I K N H R S T D S R K K P R C E I I G L L R T I G A R L I A V R N P G V K - L V Y - E P - E . . . . . . 8480 AATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTA N L L L N I I I S K R A K K F L L Y I V I F S - I - - S A K G Q R S S S F I - Y Q S S L K Y N N Q Q K G K E V P P L Y S . . . . . . 8420 CAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATG Q - W R R T R G L V G L I A C S L L N M N D G E G L E G W - A - L R V P F - T - T M M E K D S R A G R L D C V F P S K H . . . . . . 8360 ATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATG I R T L L K K F Q V Y H L K I L G H Q M - G L C - R S F K F I I - K Y - D I K - D K D S V E E V S S L S S E N T R T S N . . . . . . 8300 ATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCA I A P E V T I - T P L A V R S S P I T P L L Q K - Q Y R L H - R - G P A Q - P H D C S R S N N I D S I S G E V Q P N N P . . . . . . 8240 TTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCG F W M T R I L Q L G T T C I A I L L V P S G - Q E F C S - G Q L A - L S S W S R I L D D K N S A V R D N L H S Y P L G P . . . . . . 8180 TTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTA F L R Q M M I L V F L I V I M R I K V V F S G R - - S W F S - - - S - G - K - Y V S Q A D D D L G F L D S N H E D K S S . . . . . . 8120 CCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGT P S S Y I I T G L R W K T L R M L T G C R A L I L - L A - D G K L - G C - Q D V T E L L Y Y N W P E M E N F E D V D R M . : . . . . . 8060 TCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGT S : E V V I Q H L E L E L V S K M T L V G R : K L - F N I W S W S - Y R R - P W L V F G : S C D S T F G V G A S I E D D L G W . . . . . . 7900 TTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTG F R H L V L L K D L E V D - G Q I W S L F V I W C Y - R I W R W I E V R F G V C F S S S G V I E G S G G G L R S D L E F . . . . . . 7840 CCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAA P S Q H P V H L K I S L E C R K L P G Q L L N I Q C T - K Y L W N A G S F Q V K A F S T S S A L E N I S G M Q E A S R S . . . . . . 7780 AGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTG R K Q A I Q L M I L A L K I N S S V R L G N R Q F N - - F W H - R S T L Q S D W K E T G N S I N D S G T K D Q L F S Q T . . . . . . 7720 GCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATG A V Q C H Q R M N Q P F - V I Y L L Q M Q F N A I R G - I S R S E S S I F Y K W G S S M P S E D E S A V L S H L S F T N . . . . . : . 7660 GTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTA V Q V I Q I S R - C P - R R : L I F T K L F K - F R F Q D S A H K E : D - S S Q N - G S S D S D F K I V P I K K : I N L H K I . . . . . . 5539 ACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGG T L S S R I N L R E K E N M F T W K M G L - A P E S I - G K K K T C L R G K W G N S K L Q N Q S E G K R K H V Y V E N G . . . . . . 5479 AGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTG R H S T I L I A F Q K R E T I L L Q S L D I Q L Y - - P S R R E K P S Y C N H W E T F N Y I D S L P E E R N H P T A I T . . . . . . 5419 GATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATT D L R L S H P Q V F S S T S K L M D L I I S G S H I H R Y S A A Q A S - W I - F G S Q A L T S T G I Q Q H K Q V D G S D . . . . . . 5359 TTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGA L G I F R M A F L T Y L Q I T V I Q I R W V F S G W L F L L I F R L Q S F R S D F G Y F Q D G F S Y L S S D Y S H S D Q . . . . . . 5299 CTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTT L R F V Q P Y P Q L N L K K A V S - L F Y G L S N P I H N - I - K K L S R D S F T T V C P T L S T I K S K K S C L V T L . . . . . . 5239 CTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTT L L R T P V R Q I R C S - W K A Y L I L C - G L L C D K S D A V D G K L T - S F S A K D S C A T N Q M Q L M E S L P D P . . . . . . 5179 CTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTT L F R W L V - E Q M K I W W T S Y F N V F S G G W Y R N K - K Y G G Q A T S T F S F Q V A G I G T N E N M V D K L L Q R . . . . . . 5119 CTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAG L - L S M K T T G I L K V S A R E F Q Q C N - A - K Q Q G S - K C Q H G N S S R S V I K H E N N R D L E S V S T G I P A . . . . . . 5059 AAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTT K - V P L L - R R A L A Q V L G - M K F S R F L Y C K G E L L H K F W V E - N F E V G S S I V K E S S C T S S G L N E I . . . . . : . 4999 CTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAA L R R Q I V F I S L N M S W N G : W M - E - G G R - F S S A - T C H G T : V G C K N S E E A D S F H Q L E H V M E R : L D V R . . . . . . 3977 CAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTA Q S Y G - G I A C I G W L R V L N K G L K A T D K G - L V S V G S E C - T K A - T K L R I R D S L Y R L A Q S A E Q R L . . . . . . 3917 GACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATG D M L I S I M D L V M I V T Q A E H L M T C - S Q - W I W - - - S H K Q S I - - R H A N L N N G S G D D S H T S R A F D . . : . . . . 3857 ATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAG M M E H T : D A Q D I W T R R Q T L T L - - W S I Q : M H R I F G H G D R H - L Y R D D G A Y R : C T G Y L D T E T D T N S I . . . . . . 3519 ATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATT I D L L L T Y S S T G L Q T H Q - W L I S I Y C S L T L P Q A F K L I S D G - F D R S I A H L L F H R P S N S S V M A D . . . : . . . 3459 CTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTG L W L W S H L P R : F S R H Y S A H Q - L F G F G V T F H : D F R D I T Q P T N D - S L A L E S P S T : I F E T L L S P P M I . . . . . . 3315 ATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATT M R T - F L L E K M Q P N Q I K A R N I - E L D F C W R K C S R T R - R H E I L D E N L I S A G E N A A E P D K G T K Y . . . . . . 3255 AAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCT K Q A S I Q M G C V Y F N L C R M D S P N R L L Y K W V V F I S I Y V A W T R L - T G F Y T N G L C L F Q F M S H G L A . . . . . . 3195 ACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTG T C M C M - V S A M D T Y I L F C C L V H V C A C K Y L L W I L I Y S F V V - C Y M Y V H V S I C Y G Y L Y T L L L F S . . . . . . 3135 TAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTAC - F E E S K Q Y E N E D L C Q I A Y S Y N S K N L N S M R M R I Y V K - L T V T V I R R I - T V - E - G S M S N S L Q L . . . . . . 3075 TCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAATA S C V C V - E L S R I S N E K L F H V I R V F V Y E N Y Q E S Q M R N Y F M - Y L V C L C M R I I K N L K - E I I S C N . 3015 TATAA Y I I - Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-1_AGS-1_PPS_1 (8484 8057,7956 7620,5558 4953,3990 3842,3563 3434,3349 3254) (frame '0'; 1743 bp, 581 residues) 1 EQSSLKYNNQ QKGKEVPPLY STMMEKDSRA GRLDCVFPSK HDKDSVEEVS SLSSENTRTS 61 NDCSRSNNID SISGEVQPNN PILDDKNSAV RDNLHSYPLG PVSQADDDLG FLDSNHEDKS 121 STELLYYNWP EMENFEDVDR MFGSCDSTFG VGASIEDDLG WFSSSGVIEG SGGGLRSDLE 181 FAFSTSSALE NISGMQEASR SKETGNSIND SGTKDQLFSQ TGSSMPSEDE SAVLSHLSFT 241 NGSSDSDFKI VPIKKINLHK INSKLQNQSE GKRKHVYVEN GETFNYIDSL PEERNHPTAI 301 TGSQALTSTG IQQHKQVDGS DFGYFQDGFS YLSSDYSHSD QTTVCPTLST IKSKKSCLVT 361 LSAKDSCATN QMQLMESLPD PSFQVAGIGT NENMVDKLLQ RSVIKHENNR DLESVSTGIP 421 AEVGSSIVKE SSCTSSGLNE ISEEADSFHQ LEHVMERLDV RTKLRIRDSL YRLAQSAEQR 481 LRHANLNNGS GDDSHTSRAF DDDGAYRCTG YLDTETDTNS IDRSIAHLLF HRPSNSSVMA 541 DSLALESPST IFETLLSPPM IDENLISAGE NAAEPDKGTK Y- AGS-2 (4125 4089,3990 3842,3563 3434,3349 3231) SCR (e 0.973 d 0.905 a 0.000,e 1.000 d 0.986 a 0.997,e 1.000 d 0.930 a 0.814,e 0.979) Exon 1 4125 4089 ( 37 n); score: 0.973 Intron 1 4088 3991 ( 98 n); Pd: 0.905 Pa: 0.000 Exon 2 3990 3842 ( 149 n); score: 1.000 Intron 2 3841 3564 ( 278 n); Pd: 0.986 Pa: 0.997 Exon 3 3563 3434 ( 130 n); score: 1.000 Intron 3 3433 3350 ( 84 n); Pd: 0.930 Pa: 0.814 Exon 4 3349 3231 ( 119 n); score: 0.979 PGS (4125 4089,3990 3842,3563 3434,3349 3231) SGN-E236057+ 3-phase translation of AGS-2 (-strand): . . . . : . . 4125 GTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTG : TTGGATGTAAGAACAAAGCTACG V N L G - E G A V S R F : V G C K N K A T - T W A R K G Q L A D L : L D V R T K L R K L G L G R G S - Q I C : W M - E Q S Y . . . . . . 3967 GATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAA D K G - L V S V G S E C - T K A - T C - I R D S L Y R L A Q S A E Q R L R H A N G - G I A C I G W L R V L N K G L D M L . . . . . . 3907 TCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGC S Q - W I W - - - S H K Q S I - - - W S L N N G S G D D S H T S R A F D D D G A I S I M D L V M I V T Q A E H L M M M E . : . . . . . 3847 ATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTAT I Q : M H R I F G H G D R H - L Y R S I Y Y R : C T G Y L D T E T D T N S I D R S I H T : D A Q D I W T R R Q T L T L - I D L . . . . . . 3509 TGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTT C S L T L P Q A F K L I S D G - F F G F A H L L F H R P S N S S V M A D S L A L L L T Y S S T G L Q T H Q - W L I L W L . . : . . . . 3449 GGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTT G V T F H : D F R D I T Q P T N D - - E L E S P S T : I F E T L L S P P M I D E N L W S H L P R : F S R H Y S A H Q - L M R T . . . . . . 3305 GATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTT D F C W R K C S R T R - R H E I L N R L I S A G E N A A E P D K G T K Y - T G F - F L L E K M Q P N Q I K A R N I K Q A . . 3245 CTATACAAATGGGTT L Y K W V Y T N G S I Q M G Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-1_AGS-2_PPS_1 (4121 4089,3990 3842,3563 3434,3349 3254) (frame '2'; 405 bp, 135 residues) 1 TWARKGQLAD LLDVRTKLRI RDSLYRLAQS AEQRLRHANL NNGSGDDSHT SRAFDDDGAY 61 RCTGYLDTET DTNSIDRSIA HLLFHRPSNS SVMADSLALE SPSTIFETLL SPPMIDENLI 121 SAGENAAEPD KGTKY- AGS-3 (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) SCR (e 1.000 d 0.989 a 0.989,e 1.000 d 0.373 a 0.747,e 1.000 d 0.994 a 0.000,e 0.966 d 0.986 a 0.997,e 1.000) Exon 1 7873 7620 ( 254 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 Pa: 0.989 Exon 2 5558 5396 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 Pa: 0.747 Exon 3 5171 4953 ( 219 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 Pa: 0.000 Exon 4 3990 3842 ( 149 n); score: 0.966 Intron 4 3841 3564 ( 278 n); Pd: 0.986 Pa: 0.997 Exon 5 3563 3554 ( 10 n); score: 1.000 PGS (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) SGN-E261699+ PGS (7873 7620,5558 5396,5171 4953,3990 3924) SGN-E369679+ PGS (7873 7620,5558 5396,5171 4997) SGN-E301648+ PGS (7822 7620,5558 5396,5171 5069) SGN-E255283+ 3-phase translation of AGS-3 (-strand): . . . . . . 7873 CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAA L E V D - G Q I W S L P S Q H P V H L K W R W I E V R F G V C L L N I Q C T - K G G G L R S D L E F A F S T S S A L E . . . . . . 7813 ATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATT I S L E C R K L P G Q R K Q A I Q L M I Y L W N A G S F Q V K G N R Q F N - - F N I S G M Q E A S R S K E T G N S I N D . . . . . . 7753 CTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAAT L A L K I N S S V R L A V Q C H Q R M N W H - R S T L Q S D W Q F N A I R G - I S G T K D Q L F S Q T G S S M P S E D E . . . . . . 7693 CAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAG Q P F - V I Y L L Q M V Q V I Q I S R - S R S E S S I F Y K W F K - F R F Q D S S A V L S H L S F T N G S S D S D F K I . . : . . . . 7633 TGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGG C P - R R : L I F T K L T L S S R I N L R A H K E : D - S S Q N - L - A P E S I - G V P I K K : I N L H K I N S K L Q N Q S E . . . . . . 5512 GAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTC E K E N M F T W K M G R H S T I L I A F K K K T C L R G K W G D I Q L Y - - P S G K R K H V Y V E N G E T F N Y I D S L . . . . . . : 5452 CAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTG Q K R E T I L L Q S L D L R L S H P Q : V R R E K P S Y C N H W I S G S H I H R : W P E E R N H P T A I T G S Q A L T S T : G . . . . . . 5168 GCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAG A G I G T N E N M V D K L L Q R S V I K L V - E Q M K I W W T S Y F N V L - L S G W Y R N K - K Y G G Q A T S T F C N - . . . . . . 5108 CATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCC H E N N R D L E S V S T G I P A E V G S M K T T G I L K V S A R E F Q Q K - V P A - K Q Q G S - K C Q H G N S S R S R F . . . . . . 5048 TCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCA S I V K E S S C T S S G L N E I S E E A L L - R R A L A Q V L G - M K F L R R Q L Y C K G E L L H K F W V E - N F - G G . . . . : . . 4988 GATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGG D S F H Q L E H V M E R : L D V R T K L R I V F I S L N M S W N G : W M - E Q S Y G R - F S S A - T C H G T : V G C K N K A T . . . . . . 3966 ATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAAT I R D S L Y R L A Q S A E Q R L R H A N - G I A C I G W L R V L N K G L D M L I D K G - L V S V G S E C - T K A - T C - . . . . . . 3906 CTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCA L N N G S G D D S H T S R A F D D D G A S I M D L V M I V T Q A E H L M M M E H S Q - W I W - - - S H K Q S I - - - W S . : . 3846 TACAG : ATGCACAGGA Y R : C T G T : D A Q I Q : M H R Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-1_AGS-3_PPS_1 (7624 7620,5558 5396,5171 4953,3990 3842,3563 3554) (frame '1'; 546 bp, 182 residues) 1 RRLIFTKLTL SSRINLREKE NMFTWKMGRH STILIAFQKR ETILLQSLDL RLSHPQVAGI 61 GTNENMVDKL LQRSVIKHEN NRDLESVSTG IPAEVGSSIV KESSCTSSGL NEISEEADSF 121 HQLEHVMERL DVRTKLRIRD SLYRLAQSAE QRLRHANLNN GSGDDSHTSR AFDDDGAYRC 181 TG AGS-4 (7727 7620,5558 5396,5171 4845) SCR (e 1.000 d 0.989 a 0.989,e 1.000 d 0.373 a 0.747,e 0.997) Exon 1 7727 7620 ( 108 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 Pa: 0.989 Exon 2 5558 5396 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 Pa: 0.747 Exon 3 5171 4845 ( 327 n); score: 0.997 PGS (7727 7620,5558 5396,5171 4845) SGN-E273352+ 3-phase translation of AGS-4 (-strand): . . . . . . 7727 CAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTT Q T G S S M P S E D E S A V L S H L S F R L A V Q C H Q R M N Q P F - V I Y L L D W Q F N A I R G - I S R S E S S I F . . . . . : . 7667 ACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCAC T N G S S D S D F K I V P I K K : I N L H Q M V Q V I Q I S R - C P - R R : L I F T Y K W F K - F R F Q D S A H K E : D - S S . . . . . . 5546 AAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAA K I N S K L Q N Q S E G K R K H V Y V E K L T L S S R I N L R E K E N M F T W K Q N - L - A P E S I - G K K K T C L R G . . . . . . 5486 AATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCA N G E T F N Y I D S L P E E R N H P T A M G R H S T I L I A F Q K R E T I L L Q K W G D I Q L Y - - P S R R E K P S Y C . . . . : . . 5426 ATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATAT I T G S Q A L T S T : G G W Y R N K - K Y S L D L R L S H P Q : V A G I G T N E N M N H W I S G S H I H R : W L V - E Q M K I . . . . . . 5142 GGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAG G G Q A T S T F C N - A - K Q Q G S - K V D K L L Q R S V I K H E N N R D L E S W W T S Y F N V L - L S M K T T G I L K . . . . . . 5082 TGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCAC C Q H G N S S R S R F L Y C K G E L L H V S T G I P A E V G S S I V K E S S C T V S A R E F Q Q K - V P L L - R R A L A . . . . . . 5022 AAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGT K F W V E - N F - G G R - F S S A - T C S S G L N E I S E E A D S F H Q L E H V Q V L G - M K F L R R Q I V F I S L N M . . . . . . 4962 CATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGA H G T G I K S Q - K L I C I F D I V W - M E R V - N L N E N - Y A F L I L F G D S W N G Y K I S M K T N M H F - Y C L V . . . . . . 4902 TGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACC - V S S R F V L S E - F D - T N L A H E F H Q G L F - V S D L T K Q I W H T M S F I K V C F K - V I - L N K F G T Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-1_AGS-4_PPS_1 (7624 7620,5558 5396,5171 4947) (frame '2'; 390 bp, 130 residues) 1 RRLIFTKLTL SSRINLREKE NMFTWKMGRH STILIAFQKR ETILLQSLDL RLSHPQVAGI 61 GTNENMVDKL LQRSVIKHEN NRDLESVSTG IPAEVGSSIV KESSCTSSGL NEISEEADSF 121 HQLEHVMERV - AGS-5 (7702 7620,5558 5295,5171 5090) SCR (e 1.000 d 0.989 a 0.989,e 1.000 d 0.611 a 0.747,e 1.000) Exon 1 7702 7620 ( 83 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 Pa: 0.989 Exon 2 5558 5295 ( 264 n); score: 1.000 Intron 2 5294 5172 ( 123 n); Pd: 0.611 Pa: 0.747 Exon 3 5171 5090 ( 82 n); score: 1.000 PGS (7700 7620,5558 5295,5171 5090) SGN-E318635+ PGS (7702 7620,5558 5295,5171 5100) SGN-E295033+ 3-phase translation of AGS-5 (-strand): . . . . . . 7702 AGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATT R M N Q P F - V I Y L L Q M V Q V I Q I G - I S R S E S S I F Y K W F K - F R F D E S A V L S H L S F T N G S S D S D . . . : . . . 7642 TCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATC S R - C P - R R : L I F T K L T L S S R I Q D S A H K E : D - S S Q N - L - A P E S F K I V P I K K : I N L H K I N S K L Q N . . . . . . 5521 AATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTG N L R E K E N M F T W K M G R H S T I L I - G K K K T C L R G K W G D I Q L Y - Q S E G K R K H V Y V E N G E T F N Y I . . . . . . 5461 ATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACAT I A F Q K R E T I L L Q S L D L R L S H - P S R R E K P S Y C N H W I S G S H I D S L P E E R N H P T A I T G S Q A L T . . . . . . 5401 CCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATG P Q V F S S T S K L M D L I L G I F R M H R Y S A A Q A S - W I - F W V F S G W S T G I Q Q H K Q V D G S D F G Y F Q D . . . . . : . 5341 GCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACG : GTGGCTGGTATAG A F L T Y L Q I T V I Q I R L R : W L V - L F L L I F R L Q S F R S D Y : G G W Y R G F S Y L S S D Y S H S D Q T T : V A G I . . . . . . 5158 GAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACA E Q M K I W W T S Y F N V L - L S M K T N K - K Y G G Q A T S T F C N - A - K Q G T N E N M V D K L L Q R S V I K H E N . 5098 ACAGGGATC T G I Q G N R D Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-1_AGS-5_PPS_1 (7700 7620,5558 5295,5171 5091) (frame '0'; 426 bp, 142 residues) 1 DESAVLSHLS FTNGSSDSDF KIVPIKKINL HKINSKLQNQ SEGKRKHVYV ENGETFNYID 61 SLPEERNHPT AITGSQALTS TGIQQHKQVD GSDFGYFQDG FSYLSSDYSH SDQTTVAGIG 121 TNENMVDKLL QRSVIKHENN RD PGL 2 (+ strand): 14305 18925 AGS-1 (14305 14428,14884 15173,15989 15995,16963 16968,18902 18925) SCR (e 0.895 d 0.000 a 0.000,e 0.866 d 0.000 a 0.979,e 0.857 d 0.000 a 0.950,e 0.833 d 0.000 a 0.914,e 0.750) Exon 1 14305 14428 ( 124 n); score: 0.895 Intron 1 14429 14883 ( 455 n); Pd: 0.000 Pa: 0.000 Exon 2 14884 15173 ( 290 n); score: 0.866 Intron 2 15174 15988 ( 815 n); Pd: 0.000 Pa: 0.979 Exon 3 15989 15995 ( 7 n); score: 0.857 Intron 3 15996 16962 ( 967 n); Pd: 0.000 Pa: 0.950 Exon 4 16963 16968 ( 6 n); score: 0.833 Intron 4 16969 18901 (1933 n); Pd: 0.000 Pa: 0.914 Exon 5 18902 18925 ( 24 n); score: 0.750 PGS (14305 14428,14884 15018) SGN-E578392+ PGS (14315 14389) SGN-E391901- PGS (14379 14428,14884 15173) SGN-E253695- PGS (14391 14428,14884 15092) SGN-E204223+ PGS (14391 14428,14884 15067) SGN-E374844+ PGS (14892 15173,15989 15995,16963 16968,18902 18925) SGN-E249253- PGS (14916 15164) SGN-E242674+ PGS (14916 15164) SGN-E233074+ PGS (14916 15164) SGN-E233594+ PGS (14916 15164) SGN-E233735+ PGS (14916 15164) SGN-E377238+ PGS (14916 15164) SGN-E240879+ PGS (14973 15164) SGN-E544203+ PGS (15043 15172) SGN-E376754+ PGS (15067 15130) SGN-E217478+ PGS (15067 15130) SGN-E228654+ PGS (15067 15130) SGN-E229134+ PGS (15068 15176) SGN-E577960- PGS (15084 15164) SGN-E240526- PGS (15115 15168) SGN-E256217+ 3-phase translation of AGS-1 (+strand): . . . . . . 14305 AATGTAAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTGAAA N V R A R L D G L N K S S F K K V L L K M - G P V W M G L I K A A L K K Y F - K C K G P F G W A - - K Q L - K S T F E . . . . . . 14365 GTGCTGAAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGATGAAGTTAA V L K L I F K I S S Y A F G - K - - S - C - N L F L K - A V M R L D K S D E V K S A E T Y F - N K Q L C V W I K V M K L . : . . . . . 14425 AAAA : CCACACGTGAAAAGGAAAAAATAGAAGAAAGAGATGTTAGGATTATGTGGGTAATT K : T T R E K E K I E E R D V R I M W V I K : P H V K R K K - K K E M L G L C G - F K N : H T - K G K N R R K R C - D Y V G N . . . . . . 14940 TGAAGATTGTATAAAAATATTAAGGGCAAACAGGTAAAAATGTGGTCAACTTAAAACAGC - R L Y K N I K G K Q V K M W S T - N S E D C I K I L R A N R - K C G Q L K T A L K I V - K Y - G Q T G K N V V N L K Q . . . . . . 15000 TTATAAGCTGGGGAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGACTTAAAATAAG L - A G E K K H P Y P S F - L L T - N K Y K L G K K S T P T P A F N F - L K I S L I S W G K K A P L P Q L L T F D L K - . . . . . . 15060 TTTTTTTTAACTTAAAATAAGTTGTTTTGAGTATTGTCAAACAGCTAAATAAGTCAAAAA F F L T - N K L F - V L S N S - I S Q K F F - L K I S C F E Y C Q T A K - V K N V F F N L K - V V L S I V K Q L N K S K . . . . . . : 15120 CCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTAAA : GCTGGA P A F K S V - P A F K L S Q T G S K : A G Q L L S Q F D Q L L S - A K Q A L K : L E T S F - V S L T S F - A E P N R L - : S W . : : . . . 15995 G : ATATTG : AATCCCTAAGTATGTTCAGAATAA : D I : E S L S M F R I : I L : N P - V C S E - R : Y - : I P K Y V Q N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (14917 15165,16225 16251) SCR (e 0.890 d 0.889 a 0.000,e 0.704) Exon 1 14917 15165 ( 249 n); score: 0.890 Intron 1 15166 16224 (1059 n); Pd: 0.889 Pa: 0.000 Exon 2 16225 16251 ( 27 n); score: 0.704 PGS (14917 15165,16225 16251) SGN-E237992+ 3-phase translation of AGS-2 (+strand): . . . . . . 14917 ATGTTAGGATTATGTGGGTAATTTGAAGATTGTATAAAAATATTAAGGGCAAACAGGTAA M L G L C G - F E D C I K I L R A N R - C - D Y V G N L K I V - K Y - G Q T G K V R I M W V I - R L Y K N I K G K Q V . . . . . . 14977 AAATGTGGTCAACTTAAAACAGCTTATAAGCTGGGGAAAAAAAGCACCCCTACCCCAGCT K C G Q L K T A Y K L G K K S T P T P A N V V N L K Q L I S W G K K A P L P Q L K M W S T - N S L - A G E K K H P Y P S . . . . . . 15037 TTTAACTTTTGACTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTGTTTTGAGTATTGT F N F - L K I S F F - L K I S C F E Y C L T F D L K - V F F N L K - V V L S I V F - L L T - N K F F L T - N K L F - V L . . . . . . 15097 CAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGA Q T A K - V K N Q L L S Q F D Q L L S - K Q L N K S K T S F - V S L T S F - A E S N S - I S Q K P A F K S V - P A F K L . : . . . 15157 GCCAAACAG : GAACTCAGATAAATTCTTTTCTTCTTT A K Q : E L R - I L F F F P N R : N S D K F F S S S Q T : G T Q I N S F L L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (15501 15657,15735 15858,16980 17094) SCR (e 1.000 d 0.000 a 0.000,e 0.992 d 0.000 a 0.000,e 1.000) Exon 1 15501 15657 ( 157 n); score: 1.000 Intron 1 15658 15734 ( 77 n); Pd: 0.000 Pa: 0.000 Exon 2 15735 15858 ( 124 n); score: 0.992 Intron 2 15859 16979 (1121 n); Pd: 0.000 Pa: 0.000 Exon 3 16980 17094 ( 115 n); score: 1.000 PGS (15501 15657,15735 15858,16980 17094) SGN-E248186- 3-phase translation of AGS-3 (+strand): . . . . . . 15501 ACTGTTTCTCCTGGTTCGAGCACATCAGCAATTCGCCTCTTCATCTTTCCTAGTTGTTCT T V S P G S S T S A I R L F I F P S C S L F L L V R A H Q Q F A S S S F L V V L C F S W F E H I S N S P L H L S - L F . . . . . . 15561 GATGTAAGGTCTTGAATCTCATCTTCATTTGATATCTTGATAGCTTTCTTCCCAGAATAT D V R S - I S S S F D I L I A F F P E Y M - G L E S H L H L I S - - L S S Q N M - C K V L N L I F I - Y L D S F L P R I . . . . : . . 15621 GTTTTCTCAGTATCAACACTATCAAGCCATGCATCCT : TTATCTCATTTTCATTTAAATAT V F S V S T L S S H A S : F I S F S F K Y F S Q Y Q H Y Q A M H P : L S H F H L N I C F L S I N T I K P C I L : Y L I F I - I . . . . . . 15758 TCAACATAGTTTCCTGATGCATCAAAATAACCTTCTTCTCTCTCTTTATTCAGATTAAAA S T - F P D A S K - P S S L S L F R L K Q H S F L M H Q N N L L L S L Y S D - K F N I V S - C I K I T F F S L F I Q I K . . . . . : . 15818 GGTTCTATTGCAATCCCATCATCAATGAATGTTTCATTTTC : CTCATATTCCACTTCTGCC G S I A I P S S M N V S F S : S Y S T S A V L L Q S H H Q - M F H F : P H I P L L P R F Y C N P I I N E C F I F : L I F H F C . . . . . . 16999 CGCGATATGTCAGCTATTTCACCTTCGTTTTCTTCATCAAGGAGTTCCGCTGTTATTTGA R D M S A I S P S F S S S R S S A V I - A I C Q L F H L R F L H Q G V P L L F D P R Y V S Y F T F V F F I K E F R C Y L . . . . 17059 TTCCGCCGTGCCGAACGCTCTTTGGCTGCATTGCGA F R R A E R S L A A L R S A V P N A L W L H C I P P C R T L F G C I A Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-2_AGS-3_PPS_1 (15775 15858,16980 17093) (frame '0'; 198 bp, 66 residues) 1 CIKITFFSLF IQIKRFYCNP IINECFIFLI FHFCPRYVSY FTFVFFIKEF RCYLIPPCRT 61 LFGCIA PGL 3 (+ strand): 21219 22803 AGS-1 (21219 21748,22613 22803) SCR (e 0.884 d 0.000 a 0.000,e 0.825) Exon 1 21219 21748 ( 530 n); score: 0.884 Intron 1 21749 22612 ( 864 n); Pd: 0.000 Pa: 0.000 Exon 2 22613 22803 ( 191 n); score: 0.825 PGS (21219 21748,22613 22669) SGN-E308984+ PGS (21304 21748,22613 22803) SGN-E255576- PGS (21477 21748,22613 22803) SGN-E258424- PGS (21551 21748,22613 22803) SGN-E258522- 3-phase translation of AGS-1 (+strand): . . . . . . 21219 GCAAGACCACTCTTGCGAGAAACCTCTACAGAAGTCCTAGTATATAGTCAATACCTTCCC A R P L L R E T S T E V L V Y S Q Y L P Q D H S C E K P L Q K S - Y I V N T F P K T T L A R N L Y R S P S I - S I P S . . . . . . 21279 TACACGTGTGTCGATATGTGTTTCTCAAGAGTGCAACACAATGGATCTTCTTAAGACTAT Y T C V D M C F S R V Q H N G S S - D Y T R V S I C V S Q E C N T M D L L K T I L H V C R Y V F L K S A T Q W I F L R L . . . . . . 21339 CATAAAATCCATCCAAGTTTGCACCAACGAAACTCTTGATTTGTTGGAAAGGATGGCAGA H K I H P S L H Q R N S - F V G K D G R I K S I Q V C T N E T L D L L E R M A E S - N P S K F A P T K L L I C W K G W Q . . . . . . 21399 AAGAGATCTAGAAATTTACCTTCGTAAGCTATTAACAAAACACAAATACCTTTTGGTGGT K R S R N L P S - A I N K T Q I P F G G R D L E I Y L R K L L T K H K Y L L V V K E I - K F T F V S Y - Q N T N T F W W . . . . . . 21459 TGATGGTGTGTGGCTAATAGAAGCATGGAAGAGTTTGAAAAGAGCATTTCCGGATAACAA - W C V A N R S M E E F E K S I S G - Q D G V W L I E A W K S L K R A F P D N N L M V C G - - K H G R V - K E H F R I T . . . . . . 21519 TAATGGCAGCAGAGTTGTTATTACCACACGCAAAGTGGATGTCGCTGAAAGAGCAGACGA - W Q Q S C Y Y H T Q S G C R - K S R R N G S R V V I T T R K V D V A E R A D D I M A A E L L L P H A K W M S L K E Q T . . . . . . 21579 CAGAGGTTTTGTCCATGAACTTCGTTTCCTAAGCCAAGAAGAAAGTTGGGATTCTTTTGT Q R F C P - T S F P K P R R K L G F F C R G F V H E L R F L S Q E E S W D S F V T E V L S M N F V S - A K K K V G I L L . . . . . . 21639 AGGAAACTACTTGATGTTCGATCAATGGTTACAGCAATGGAAAGTCTAGCTAAGGATATG R K L L D V R S M V T A M E S L A K D M G N Y L M F D Q W L Q Q W K V - L R I W - E T T - C S I N G Y S N G K S S - G Y . . . . . : . 21699 GTGGAAAAGTGTAGAGGCTTACCTCTTGCAATTGTTGTATTGAGCGGATT : ACTTTCGCAT V E K C R G L P L A I V V L S G L : L S H W K S V E A Y L L Q L L Y - A D : Y F R I G G K V - R L T S C N C C I E R I : T F A . . . . . . 22623 AAAATGGGGCTAGACGAATGGCAAAAGGTGAAAGACTGCCTTTGGAAGAACATTGAAGAT K M G L D E W Q K V K D C L W K N I E D K W G - T N G K R - K T A F G R T L K M - N G A R R M A K G E R L P L E E H - R . . . . . . 22683 GACTCTATTGAAATCTCCTATATACTATCATTGAGCTATAATGATTTGTCAATTGTGCTC D S I E I S Y I L S L S Y N D L S I V L T L L K S P I Y Y H - A I M I C Q L C S - L Y - N L L Y T I I E L - - F V N C A . . . . . . 22743 AAGCAATGTTTTCTGTACTTTGATATTTTTCCAGAAGATCAAGTGGTCGATGTTGAGAAC K Q C F L Y F D I F P E D Q V V D V E N S N V F C T L I F F Q K I K W S M L R T Q A M F S V L - Y F S R R S S G R C - E . 22803 A Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-3_AGS-1_PPS_1 (21259 21687) (frame '2'; 426 bp, 142 residues) 1 YIVNTFPTRV SICVSQECNT MDLLKTIIKS IQVCTNETLD LLERMAERDL EIYLRKLLTK 61 HKYLLVVDGV WLIEAWKSLK RAFPDNNNGS RVVITTRKVD VAERADDRGF VHELRFLSQE 121 ESWDSFVGNY LMFDQWLQQW KV- AGS-2 (21641 21672,21969 22315) SCR (e 0.719 d 0.000 a 0.993,e 0.716) Exon 1 21641 21672 ( 32 n); score: 0.719 Intron 1 21673 21968 ( 296 n); Pd: 0.000 Pa: 0.993 Exon 2 21969 22315 ( 347 n); score: 0.716 PGS (21641 21672,21969 22315) SGN-E538064+ PGS (21641 21672,21969 22235) SGN-E268499+ 3-phase translation of AGS-2 (+strand): . . . . : . . 21641 GAAACTACTTGATGTTCGATCAATGGTTACAG : AAACACGAAGTTACCAAGTTTAATGAAC E T T - C S I N G Y R : N T K L P S L M N K L L D V R S M V T : E T R S Y Q V - - T N Y L M F D Q W L Q : K H E V T K F N E . . . . . . 21997 CAGTGAAGAATAGAAGAATAGAAGAACTGAAATTAATTCACAAATCTAAAATTTGTAAAA Q - R I E E - K N - N - F T N L K F V K S E E - K N R R T E I N S Q I - N L - N P V K N R R I E E L K L I H K S K I C K . . . . . . 22057 CACGTACCAGAATCTGAAAAAAAATTTAATAGGAAAAAGATCAAGTCCACTGAATTCACA H V P E S E K K F N R K K I K S T E F T T Y Q N L K K N L I G K R S S P L N S Q T R T R I - K K I - - E K D Q V H - I H . . . . . . 22117 GTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCT V S P - G N Y S P L V S E V - F G I - P C P L K E I I P L - Y P R F D L E Y D L S V P L R K L F P S S I R G L I W N M T . . . . . . 22177 CCTAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCCGGTGTCAGCGA P R V K - S Q S P E Y R Y Q K L R C Q R L G - N D L N H Q S I D T K N S G V S E S - G K M I S I T R V - I P K T P V S A . . . . . . 22237 ACCACTCAACGGCAGTAAAGTACACTTAGAATACTAAATTTAGTAGTTGAAGAAGAAGTC T T Q R Q - S T L R I L N L V V E E E V P L N G S K V H L E Y - I - - L K K K S N H S T A V K Y T - N T K F S S - R R S . . 22297 CATTAATTCTTTTTTTAAA H - F F F - I N S F F K P L I L F L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (21754 21850) SCR (e 0.928) Exon 1 21754 21850 ( 97 n); score: 0.928 PGS (21754 21850) SGN-E214138- 3-phase translation of AGS-3 (+strand): . . . . . . 21754 TCATCTTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAA S S C I P N I L R T K L - T S L - E N K H L V F Q T Y L E Q N F E H L C K K T K I L Y S K H T - N K T L N I F V R K Q . . . . 21814 GTTTAAGAACATTTTCACAACTAGAAAATTAAAACTA V - E H F H N - K I K T F K N I F T T R K L K L S L R T F S Q L E N - N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 21850 TAGTTTTAATTTTCTAGTTGTGAAAATGTTCTTAAACTTTGTTTTCTTACAAAGATGTTC - F - F S S C E N V L K L C F L T K M F S F N F L V V K M F L N F V F L Q R C S V L I F - L - K C S - T L F S Y K D V . . . . 21790 AAAGTTTTGTTCTAAGTATGTTTGGAATACAAGATGA K V L F - V C L E Y K M K F C S K Y V W N T R - Q S F V L S M F G I Q D Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 24506 25018 AGS-1 (24506 25018) SCR (e 0.859) Exon 1 24506 25018 ( 513 n); score: 0.859 PGS (24506 25018) SGN-E308984+ 3-phase translation of AGS-1 (+strand): . . . . . . 24506 TATGTGTTTCTCAAGAGTACAACACAATGAATCTTCTTAAAACTATCATAAAATCCATCC Y V F L K S T T Q - I F L K L S - N P S M C F S R V Q H N E S S - N Y H K I H P C V S Q E Y N T M N L L K T I I K S I . . . . . . 24566 AAGGTTACAACACAAAAACTCTAGATTTGTCGGAAAAGATGGCAGAAAGAGATCTAGAAA K V T T Q K L - I C R K R W Q K E I - K R L Q H K N S R F V G K D G R K R S R K Q G Y N T K T L D L S E K M A E R D L E . . . . . . 24626 ATCACCTTCGTAAGCTAATAACAAAACACAAATACCTTGTGGTGATTGATGATATGTGGC I T F V S - - Q N T N T L W - L M I C G S P S - A N N K T Q I P C G D - - Y V A N H L R K L I T K H K Y L V V I D D M W . . . . . . 24686 AGCGAGAAGCGTGGAAGAGTTTGAAAAGAGCATTCTCGGATAGCAATAATGCCAGCAGAG S E K R G R V - K E H S R I A I M P A E A R S V E E F E K S I L G - Q - C Q Q S Q R E A W K S L K R A F S D S N N A S R . . . . . . 24746 TTATTATTACCACTCGCAAAGTGGGTGTCGCTGAAAGAGCAGACAACAGAGGTTTTGTCC L L L P L A K W V S L K E Q T T E V L S Y Y Y H S Q S G C R - K S R Q Q R F C P V I I T T R K V G V A E R A D N R G F V . . . . . . 24806 ATGAACTTTGTTTCCTAAGACAAGAAGAAAGTTGGGAACTCTTTTGTAGGAAACTAGTTG M N F V S - D K K K V G N S F V G N - L - T L F P K T R R K L G T L L - E T S - H E L C F L R Q E E S W E L F C R K L V . . . . . . 24866 ATGTTCGAGCAATGATTCCAGCGATGGTAAGTCTAGTTAAGGATATGATGGAAACTATAG M F E Q - F Q R W - V - L R I - W K L - C S S N D S S D G K S S - G Y D G N Y R D V R A M I P A M V S L V K D M M E T I . . . . . . 24926 AGGCCTACCTCTTGCAATTGTTGTATTGAGTGGACTACTTTAGCATGAAAGGGGACAAGA R P T S C N C C I E W T T L A - K G T R G L P L A I V V L S G L L - H E R G Q D E A Y L L Q L L Y - V D Y F S M K G D K . . . . 24986 CGAATGGCAAAAAGTTAAAGACTGCCTTTGGAA R M A K S - R L P L E E W Q K V K D C L W T N G K K L K T A F G Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-4_AGS-1_PPS_1 (24508 24954) (frame '0'; 444 bp, 148 residues) 1 CVSQEYNTMN LLKTIIKSIQ GYNTKTLDLS EKMAERDLEN HLRKLITKHK YLVVIDDMWQ 61 REAWKSLKRA FSDSNNASRV IITTRKVGVA ERADNRGFVH ELCFLRQEES WELFCRKLVD 121 VRAMIPAMVS LVKDMMETIE AYLLQLLY- 3-phase translation of AGS-1 (-strand): . . . . . . 25018 TTCCAAAGGCAGTCTTTAACTTTTTGCCATTCGTCTTGTCCCCTTTCATGCTAAAGTAGT F Q R Q S L T F C H S S C P L S C - S S S K G S L - L F A I R L V P F H A K V V P K A V F N F L P F V L S P F M L K - . . . . . . 24958 CCACTCAATACAACAATTGCAAGAGGTAGGCCTCTATAGTTTCCATCATATCCTTAACTA P L N T T I A R G R P L - F P S Y P - L H S I Q Q L Q E V G L Y S F H H I L N - S T Q Y N N C K R - A S I V S I I S L T . . . . . . 24898 GACTTACCATCGCTGGAATCATTGCTCGAACATCAACTAGTTTCCTACAAAAGAGTTCCC D L P S L E S L L E H Q L V S Y K R V P T Y H R W N H C S N I N - F P T K E F P R L T I A G I I A R T S T S F L Q K S S . . . . . . 24838 AACTTTCTTCTTGTCTTAGGAAACAAAGTTCATGGACAAAACCTCTGTTGTCTGCTCTTT N F L L V L G N K V H G Q N L C C L L F T F F L S - E T K F M D K T S V V C S F Q L S S C L R K Q S S W T K P L L S A L . . . . . . 24778 CAGCGACACCCACTTTGCGAGTGGTAATAATAACTCTGCTGGCATTATTGCTATCCGAGA Q R H P L C E W - - - L C W H Y C Y P R S D T H F A S G N N N S A G I I A I R E S A T P T L R V V I I T L L A L L L S E . . . . . . 24718 ATGCTCTTTTCAAACTCTTCCACGCTTCTCGCTGCCACATATCATCAATCACCACAAGGT M L F S N S S T L L A A T Y H Q S P Q G C S F Q T L P R F S L P H I I N H H K V N A L F K L F H A S R C H I S S I T T R . . . . . . 24658 ATTTGTGTTTTGTTATTAGCTTACGAAGGTGATTTTCTAGATCTCTTTCTGCCATCTTTT I C V L L L A Y E G D F L D L F L P S F F V F C Y - L T K V I F - I S F C H L F Y L C F V I S L R R - F S R S L S A I F . . . . . . 24598 CCGACAAATCTAGAGTTTTTGTGTTGTAACCTTGGATGGATTTTATGATAGTTTTAAGAA P T N L E F L C C N L G W I L - - F - E R Q I - S F C V V T L D G F Y D S F K K S D K S R V F V L - P W M D F M I V L R . . . . 24538 GATTCATTGTGTTGTACTCTTGAGAAACACATA D S L C C T L E K H I I H C V V L L R N T R F I V L Y S - E T H Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-4_AGS-1_PPS_1 (24929 24627) (frame '0'; 300 bp, 100 residues) 1 ASIVSIISLT RLTIAGIIAR TSTSFLQKSS QLSSCLRKQS SWTKPLLSAL SATPTLRVVI 61 ITLLALLLSE NALFKLFHAS RCHISSITTR YLCFVISLRR - PGL 5 (- strand): 27675 25720 AGS-1 (27463 27093,27046 27012,26974 26935,26645 26640,26317 26293,25740 25720) SCR (e 0.877 d 0.000 a 0.878,e 0.657 d 0.000 a 0.000,e 0.800 d 0.000 a 0.898,e 0.833 d 0.000 a 0.940,e 0.640 d 0.900 a 0.000,e 0.762) Exon 1 27463 27093 ( 371 n); score: 0.877 Intron 1 27092 27047 ( 46 n); Pd: 0.000 Pa: 0.878 Exon 2 27046 27012 ( 35 n); score: 0.657 Intron 2 27011 26975 ( 37 n); Pd: 0.000 Pa: 0.000 Exon 3 26974 26935 ( 40 n); score: 0.800 Intron 3 26934 26646 ( 289 n); Pd: 0.000 Pa: 0.898 Exon 4 26645 26640 ( 6 n); score: 0.833 Intron 4 26639 26318 ( 322 n); Pd: 0.000 Pa: 0.940 Exon 5 26317 26293 ( 25 n); score: 0.640 Intron 5 26292 25741 ( 552 n); Pd: 0.900 Pa: 0.000 Exon 6 25740 25720 ( 21 n); score: 0.762 PGS (27463 27093,27046 27012,26974 26935,26645 26640,26317 26293,25740 25720) SGN-E542827+ 3-phase translation of AGS-1 (-strand): . . . . . . 27463 TTGACTTTTTTTTTTGTTTCAATGACTAGTTTATAATTATTATTTTGATAATCAAATTTA L T F F F V S M T S L - L L F - - S N L - L F F L F Q - L V Y N Y Y F D N Q I Y D F F F C F N D - F I I I I L I I K F . . . . . . 27403 TTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTCTTCAAA F M F H - Y S C K T Y C R - P N F F F K L C F T N I L V K L I V D D Q I F S S N I Y V S L I F L - N L L - M T K F F L Q . . . . . . 27343 TACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTATTCTTTAAACTA Y E I K L Q Y T Q K K - F N F L F F K L T K L N Y N T H K K N S L I F Y S L N - I R N - I T I H T K K I V - F F I L - T . . . . . . 27283 AGGAATGAAAGAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGT R N E R K N K I R I R N S N N Y N K R S G M K E K T K - E - E I Q I I I I K E V K E - K K K Q N K N K K F K - L - - K K . . . . . . 27223 CAAAAAATAATTAATATATGAAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAAT Q K I I N I - K K I K I Y L E L - - K N K K - L I Y E K K L K Y T L N F D R R I S K N N - Y M K K N - N I P - T L I E E . . . . . . 27163 CATATATACCCCTAAATAATTTTTAAATTTTTTTTAGAAGTAATAAATATAAATTTAAAA H I Y P - I I F K F F L E V I N I N L K I Y T P K - F L N F F - K - - I - I - N S Y I P L N N F - I F F R S N K Y K F K . . : . . . : . 27103 CTAATTTTTTA : GGGTATATGTGAGCCGTTTATATAACGGTAAGGGC : TCCAAATGACAAAG L I F - : G I C E P F I - R - G : L Q M T K - F F : R V Y V S R L Y N G K G : S K - Q S T N F L : G Y M - A V Y I T V R A : P N D K . . . : . : . . : 26960 TTGAGGGGTATATCAGACCCTTTTCC : GGAAAA : TTGCATAAAATTTATATGAAAGAAA : TAA L R G I S D P F P : E N : C I K F I - K K : - - G V Y Q T L F : R K : I A - N L Y E R N : N V E G Y I R P F S : G K : L H K I Y M K E : I . . 25737 TTAAATCATCACAAAATC L N H H K I - I I T K I K S S Q N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (27374 26922) SCR (e 0.900) Exon 1 27374 26922 ( 453 n); score: 0.900 PGS (27374 26922) SGN-E243215+ 3-phase translation of AGS-2 (-strand): . . . . . . 27374 TTATTGTAGATGACCAAATTTTTTCTTCAAATACGAAATTAAATTACAATACACACAAAA L L - M T K F F L Q I R N - I T I H T K Y C R - P N F F F K Y E I K L Q Y T Q K I V D D Q I F S S N T K L N Y N T H K . . . . . . 27314 AAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAACAAAATAAGAAT K I V - F F I L - T K E - K K K Q N K N K - F N F L F F K L R N E R K N K I R I K N S L I F Y S L N - G M K E K T K - E . . . . . . 27254 AAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTAATATATGAAAAAAAAT K K F K - L - - K K S K N N - Y M K K N R N S N N Y N K R S Q K I I N I - K K I - E I Q I I I I K E V K K - L I Y E K K . . . . . . 27194 TAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTAAATT - N I P - T L I E E S Y I P L N N F - I K I Y L E L - - K N H I Y P - I I F K F L K Y T L N F D R R I I Y T P K - F L N . . . . . . 27134 TTTTTTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAGCTTTCGTGAAATGAAGG F F R S N K Y K F K T N F L A F V K - R F L E V I N I N L K L I F - L S - N E G F F - K - - I - I - N - F F S F R E M K . . . . . . 27074 ATATATGTGAGCCATTTTGTAACGGTAGGGGTATATGTGAGCCGTTTATATAACGGTAAG I Y V S H F V T V G V Y V S R L Y N G K Y M - A I L - R - G Y M - A V Y I T V R D I C E P F C N G R G I C E P F I - R - . . . . . . 27014 GGCATATATGAGCCACTTTTATAACGAGGGGTATATCAACTCCAAATGACAAAGTTGAGG G I Y E P L L - R G V Y Q L Q M T K L R A Y M S H F Y N E G Y I N S K - Q S - G G H I - A T F I T R G I S T P N D K V E . . . . 26954 GGTATATCAGACCCTTTTCCCTCTATTTAAAAA G I S D P F P S I - K V Y Q T L F P L F K G Y I R P F S L Y L K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 26922 TTTTTAAATAGAGGGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTGGAGTTGATA F L N R G K R V - Y T P Q L C H L E L I F - I E G K G S D I P L N F V I W S - Y F K - R E K G L I Y P S T L S F G V D . . . . . . 26982 TACCCCTCGTTATAAAAGTGGCTCATATATGCCCTTACCGTTATATAAACGGCTCACATA Y P S L - K W L I Y A L T V I - T A H I T P R Y K S G S Y M P L P L Y K R L T Y I P L V I K V A H I C P Y R Y I N G S H . . . . . . 27042 TACCCCTACCGTTACAAAATGGCTCACATATATCCTTCATTTCACGAAAGCTAAAAAATT Y P Y R Y K M A H I Y P S F H E S - K I T P T V T K W L T Y I L H F T K A K K L I P L P L Q N G S H I S F I S R K L K N . . . . . . 27102 AGTTTTAAATTTATATTTATTACTTCTAAAAAAAATTTAAAAATTATTTAGGGGTATATA S F K F I F I T S K K N L K I I - G Y I V L N L Y L L L L K K I - K L F R G I Y - F - I Y I Y Y F - K K F K N Y L G V Y . . . . . . 27162 TGATTCTTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTTCATATATTAATTATTTTT - F F Y Q S S R Y I L I F F H I L I I F D S S I K V Q G I F - F F F I Y - L F F M I L L S K F K V Y F N F F S Y I N Y F . . . . . . 27222 TGACTTCTTTTATTATAATTATTTGAATTTCTTATTCTTATTTTGTTTTTTCTTTCATTC - L L L L - L F E F L I L I L F F L S F D F F Y Y N Y L N F L F L F C F F F H S L T S F I I I I - I S Y S Y F V F S F I . . . . . . 27282 CTTAGTTTAAAGAATAAAAAATTAAACTATTTTTTTTGTGTGTATTGTAATTTAATTTCG L S L K N K K L N Y F F C V Y C N L I S L V - R I K N - T I F F V C I V I - F R P - F K E - K I K L F F L C V L - F N F . . . . 27342 TATTTGAAGAAAAAATTTGGTCATCTACAATAA Y L K K K F G H L Q - I - R K N L V I Y N V F E E K I W S S T I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (27675 27522) SCR (e 0.753) Exon 1 27675 27522 ( 154 n); score: 0.753 PGS (27675 27522) SGN-E243215- 3-phase translation of AGS-3 (-strand): . . . . . . 27675 GGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTAGAGCTGATATACCCCTTATTAT G K G S D I P L N F V I - S - Y T P Y Y E K G L I Y P S T L S F R A D I P L I M K R V - Y T P Q L C H L E L I Y P L L . . . . . . 27615 GAAAGTGACTCATATATACCCCTACTTGTAAACAAATGACTCAGATATACTCTTTTCCTC E S D S Y I P L L V N K - L R Y T L F L K V T H I Y P Y L - T N D S D I L F S S - K - L I Y T P T C K Q M T Q I Y S F P . . . . 27555 TAACGGAAATGAAAAAAAAATAATTTTAATCTAA - R K - K K N N F N L N G N E K K I I L I - L T E M K K K - F - S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 27522 TTAGATTAAAATTATTTTTTTTTCATTTCCGTTAGAGGAAAAGAGTATATCTGAGTCATT L D - N Y F F F I S V R G K E Y I - V I - I K I I F F S F P L E E K S I S E S F R L K L F F F H F R - R K R V Y L S H . . . . . . 27582 TGTTTACAAGTAGGGGTATATATGAGTCACTTTCATAATAAGGGGTATATCAGCTCTAAA C L Q V G V Y M S H F H N K G Y I S S K V Y K - G Y I - V T F I I R G I S A L N L F T S R G I Y E S L S - - G V Y Q L - . . . . 27642 TGACAAAGTTGAGGGGTATATCAGACCCTTTTCC - Q S - G V Y Q T L F D K V E G Y I R P F S M T K L R G I S D P F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (- strand): 34938 29361 AGS-1 (34938 34824,33923 33918,29959 29361) SCR (e 0.913 d 0.000 a 0.981,e 0.667 d 0.900 a 0.000,e 0.895) Exon 1 34938 34824 ( 115 n); score: 0.913 Intron 1 34823 33924 ( 900 n); Pd: 0.000 Pa: 0.981 Exon 2 33923 33918 ( 6 n); score: 0.667 Intron 2 33917 29960 (3958 n); Pd: 0.900 Pa: 0.000 Exon 3 29959 29361 ( 599 n); score: 0.895 PGS (29942 29361) SGN-E308984- PGS (34938 34824,33923 33918,29959 29442) SGN-E255576+ 3-phase translation of AGS-1 (-strand): . . . . . . 34938 GTTTTCAGCCTCGAGCTCTTGATCTTCTGGAAAAATACCGAAGTAGAGAAAACACTGCTT V F S L E L L I F W K N T E V E K T L L F S A S S S - S S G K I P K - R K H C L F Q P R A L D L L E K Y R S R E N T A . . . . . . : 34878 GAGCTCAGTTGACAAATCATTGTAGCTTAATGATAGTATGTAGGAGATTTCAATA : AATTT E L S - Q I I V A - - - Y V G D F N : K F S S V D K S L - L N D S M - E I S I : N L - A Q L T N H C S L M I V C R R F Q - : I . : . . . . . 33918 G : TCATCTTGAATGTTCTGCCAAAAGTGATCTTTCACTTTTTGCCATTGGTCTAGCCCCCT : V I L N V L P K V I F H F L P L V - P P : S S - M F C Q K - S F T F C H W S S P L C : H L E C S A K S D L S L F A I G L A P . . . . . . 29900 TTTATGTGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTC F M - K - S A Q Y N N C K R - A S T L F L C E S S P L N T T I A R G K P L H F S F Y V K V V R S I Q Q L Q E V S L Y T F . . . . . . 29840 CACCATATCTTTAGCTATCCTTACCATTTCTGGAACCATTGCCCGAACATCAAGTTGTTT H H I F S Y P Y H F W N H C P N I K L F T I S L A I L T I S G T I A R T S S C F P P Y L - L S L P F L E P L P E H Q V V . . . . . . 29780 CCTACAAAAGAGGTCCCAACTTTCTTTTTGGCTTAGGAAACGAAGGTTATGGACAAAACC P T K E V P T F F L A - E T K V M D K T L Q K R S Q L S F W L R K R R L W T K P S Y K R G P N F L F G L G N E G Y G Q N . . . . . . 29720 TCTGTTGTCAGCTCTTTCCGCAACATCATGTTTCCGCGTGGTAATAATAACTCTGCTGCC S V V S S F R N I M F P R G N N N S A A L L S A L S A T S C F R V V I I T L L P L C C Q L F P Q H H V S A W - - - L C C . . . . . . 29660 CTTCTTGCTATCTGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTCTGCCATACATC L L A I W E C S F Q T L P C F S L P Y I F L L S G N A L F K L S H A S L C H T S P S C Y L G M L F S N S P M L L S A I H . . . . . . 29600 ATCAACCACTACAAGGTATTTGCCTTCTTTCAATAGATCACGAAGGTAAATTTCTAGATC I N H Y K V F A F F Q - I T K V N F - I S T T T R Y L P S F N R S R R - I S R S H Q P L Q G I C L L S I D H E G K F L D . . . . . . 29540 GCTTTCTGTCATCCTTTCCAAGAAATCTAGAGTTCCCTTAGTGCGACCTTGGATGGATTT A F C H P F Q E I - S S L S A T L D G F L S V I L S K K S R V P L V R P W M D F R F L S S F P R N L E F P - C D L G W I . . . . . . 29480 TATGATATTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCGCG Y D I L K K I H C V V L L R N T Y P S A M I F L R R S I V L Y S - E T H I Q A R L - Y S - E D P L C C T L E K H I S K R . . . . . . 29420 TGTAGGGAAGCTTGACACTATATTAGGATTGTTGTAGAGGTTTCTTGCAAGAGTGGTCTT C R E A - H Y I R I V V E V S C K S G L V G K L D T I L G L L - R F L A R V V V - G S L T L Y - D C C R G F L Q E W S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-6_AGS-1_PPS_1 (29932 29552) (frame '2'; 378 bp, 126 residues) 1 SFTFCHWSSP LLCESSPLNT TIARGKPLHF STISLAILTI SGTIARTSSC FLQKRSQLSF 61 WLRKRRLWTK PLLSALSATS CFRVVIITLL PFLLSGNALF KLSHASLCHT SSTTTRYLPS 121 FNRSRR- AGS-2 (30076 29614) SCR (e 0.852) Exon 1 30076 29614 ( 463 n); score: 0.852 PGS (30076 29614) SGN-E258424+ PGS (30076 29689) SGN-E258522+ 3-phase translation of AGS-2 (-strand): . . . . . . 30076 TTTTCAGCGTCGACCTCTTGATCTTCTGGGAAAACACCAAAGTACAGAAAACACTGCTTG F S A S T S - S S G K T P K Y R K H C L F Q R R P L D L L G K H Q S T E N T A - F S V D L L I F W E N T K V Q K T L L . . . . . . 30016 AGTGTAGTTGACAAATCGTTGTAGCTCAATGATAGTATGTAGGAGATTTGAATGGAGTCA S V V D K S L - L N D S M - E I - M E S V - L T N R C S S M I V C R R F E W S H E C S - Q I V V A Q - - Y V G D L N G V . . . . . . 29956 TCTTGAATGTTCTGCCAAAAGTGATCTTTCACTTTTTGCCATTGGTCTAGCCCCCTTTTA S - M F C Q K - S F T F C H W S S P L L L E C S A K S D L S L F A I G L A P F Y I L N V L P K V I F H F L P L V - P P F . . . . . . 29896 TGTGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTCCACC C E S S P L N T T I A R G K P L H F S T V K V V R S I Q Q L Q E V S L Y T F P P M - K - S A Q Y N N C K R - A S T L F H . . . . . . 29836 ATATCTTTAGCTATCCTTACCATTTCTGGAACCATTGCCCGAACATCAAGTTGTTTCCTA I S L A I L T I S G T I A R T S S C F L Y L - L S L P F L E P L P E H Q V V S Y H I F S Y P Y H F W N H C P N I K L F P . . . . . . 29776 CAAAAGAGGTCCCAACTTTCTTTTTGGCTTAGGAAACGAAGGTTATGGACAAAACCTCTG Q K R S Q L S F W L R K R R L W T K P L K R G P N F L F G L G N E G Y G Q N L C T K E V P T F F L A - E T K V M D K T S . . . . . . 29716 TTGTCAGCTCTTTCCGCAACATCATGTTTCCGCGTGGTAATAATAACTCTGCTGCCCTTC L S A L S A T S C F R V V I I T L L P F C Q L F P Q H H V S A W - - - L C C P S V V S S F R N I M F P R G N N N S A A L . . . . . 29656 TTGCTATCTGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTC L L S G N A L F K L S H A S C Y L G M L F S N S P M L L L A I W E C S F Q T L P C F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-6_AGS-2_PPS_1 (29932 29615) (frame '1'; 318 bp, 106 residues) 1 SFTFCHWSSP LLCESSPLNT TIARGKPLHF STISLAILTI SGTIARTSSC FLQKRSQLSF 61 WLRKRRLWTK PLLSALSATS CFRVVIITLL PFLLSGNALF KLSHAS 3-phase translation of AGS-2 (+strand): . . . . . . 29614 GAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCAGATAGCAAGAAGGGCAGCAGAGTTA E K H G R V - K E H S Q I A R R A A E L R S M G E F E K S I P R - Q E G Q Q S Y E A W E S L K R A F P D S K K G S R V . . . . . . 29674 TTATTACCACGCGGAAACATGATGTTGCGGAAAGAGCTGACAACAGAGGTTTTGTCCATA L L P R G N M M L R K E L T T E V L S I Y Y H A E T - C C G K S - Q Q R F C P - I I T T R K H D V A E R A D N R G F V H . . . . . . 29734 ACCTTCGTTTCCTAAGCCAAAAAGAAAGTTGGGACCTCTTTTGTAGGAAACAACTTGATG T F V S - A K K K V G T S F V G N N L M P S F P K P K R K L G P L L - E T T - C N L R F L S Q K E S W D L F C R K Q L D . . . . . . 29794 TTCGGGCAATGGTTCCAGAAATGGTAAGGATAGCTAAAGATATGGTGGAAAAGTGTAGAG F G Q W F Q K W - G - L K I W W K S V E S G N G S R N G K D S - R Y G G K V - R V R A M V P E M V R I A K D M V E K C R . . . . . . 29854 GCTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCACATAAAAGGGGGCTAGACC A Y L L Q L L Y - A D Y F H I K G G - T L T S C N C C I E R T T F T - K G A R P G L P L A I V V L S G L L S H K R G L D . . . . . . 29914 AATGGCAAAAAGTGAAAGATCACTTTTGGCAGAACATTCAAGATGACTCCATTCAAATCT N G K K - K I T F G R T F K M T P F K S M A K S E R S L L A E H S R - L H S N L Q W Q K V K D H F W Q N I Q D D S I Q I . . . . . . 29974 CCTACATACTATCATTGAGCTACAACGATTTGTCAACTACACTCAAGCAGTGTTTTCTGT P T Y Y H - A T T I C Q L H S S S V F C L H T I I E L Q R F V N Y T Q A V F S V S Y I L S L S Y N D L S T T L K Q C F L . . . . . 30034 ACTTTGGTGTTTTCCCAGAAGATCAAGAGGTCGACGCTGAAAA T L V F S Q K I K R S T L K L W C F P R R S R G R R - K Y F G V F P E D Q E V D A E Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-6_AGS-2_PPS_1 (29616 30074) (frame '0'; 459 bp, 153 residues) 1 EAWESLKRAF PDSKKGSRVI ITTRKHDVAE RADNRGFVHN LRFLSQKESW DLFCRKQLDV 61 RAMVPEMVRI AKDMVEKCRG LPLAIVVLSG LLSHKRGLDQ WQKVKDHFWQ NIQDDSIQIS 121 YILSLSYNDL STTLKQCFLY FGVFPEDQEV DAE AGS-3 (32620 32478) SCR (e 0.909) Exon 1 32620 32478 ( 143 n); score: 0.909 PGS (32620 32478) SGN-E356529+ 3-phase translation of AGS-3 (-strand): . . . . . . 32620 AGGCATAATACATAAATATGCCCTTTAACTTGACTTCAAATCACATTTATGCCCTTCAAC R H N T - I C P L T - L Q I T F M P F N G I I H K Y A L - L D F K S H L C P S T A - Y I N M P F N L T S N H I Y A L Q . . . . . . 32560 TTTGGATGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGAACAAACAGACACACATG F G C A Q V D T - T C I K L N K Q T H M L D V H K - T L K L V - S - T N R H T C L W M C T S R H L N L Y K V E Q T D T H . . . 32500 TCCTACATGTCATCCTACTTGTC S Y M S S Y L P T C H P T C V L H V I L L V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 32478 GACAAGTAGGATGACATGTAGGACATGTGTGTCTGTTTGTTCAACTTTATACAAGTTTAA D K - D D M - D M C V C L F N F I Q V - T S R M T C R T C V S V C S T L Y K F K Q V G - H V G H V C L F V Q L Y T S L . . . . . . 32538 GTGTCTACTTGTGCACATCCAAAGTTGAAGGGCATAAATGTGATTTGAAGTCAAGTTAAA V S T C A H P K L K G I N V I - S Q V K C L L V H I Q S - R A - M - F E V K L K S V Y L C T S K V E G H K C D L K S S - . . . 32598 GGGCATATTTATGTATTATGCCT G H I Y V L C G I F M Y Y A R A Y L C I M P Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (34938 34220) SCR (e 0.883) Exon 1 34938 34220 ( 719 n); score: 0.883 PGS (34805 34220) SGN-E308984- PGS (34938 34475) SGN-E258424+ PGS (34938 34555) SGN-E258522+ 3-phase translation of AGS-4 (-strand): . . . . . . 34938 GTTTTCAGCCTCGAGCTCTTGATCTTCTGGAAAAATACCGAAGTAGAGAAAACACTGCTT V F S L E L L I F W K N T E V E K T L L F S A S S S - S S G K I P K - R K H C L F Q P R A L D L L E K Y R S R E N T A . . . . . . 34878 GAGCTCAGTTGACAAATCATTGTAGCTTAATGATAGTATGTAGGAGATTTCAATAGAGTC E L S - Q I I V A - - - Y V G D F N R V S S V D K S L - L N D S M - E I S I E S - A Q L T N H C S L M I V C R R F Q - S . . . . . . 34818 TTCTTCAATGTTCTTCCAAAGGCGGTCTTTCACCTTTTTCCATTCGCCTGGCCCCCTTTT F F N V L P K A V F H L F P F A W P P F S S M F F Q R R S F T F F H S P G P L L L L Q C S S K G G L S P F S I R L A P F . . . . . . 34758 ATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCCACACTTATCCAC M R K - S A Q Y N N C K R - A S T L I H C E S S P L N T T I A R G K P P H L S T Y A K V V R S I Q Q L Q E V S L H T Y P . . . . . . 34698 CATATCCTTAGCTAGCCTCTCCATTGTGGAGGTCATTGCTCGAACATCAAGTAGTTTCCT H I L S - P L H C G G H C S N I K - F P I S L A S L S I V E V I A R T S S S F L P Y P - L A S P L W R S L L E H Q V V S . . . . . . 34638 GCAAAAGAGATCCCAACTTTCTTCTTGGTTTAGGAAACGAAGTTTATGGACGAAACCTCT A K E I P T F F L V - E T K F M D E T S Q K R S Q L S S W F R K R S L W T K P L C K R D P N F L L G L G N E V Y G R N L . . . . . . 34578 GTTGTATGCTCTTTCAGCAACATCTTGCTTGCGCGTGGTGATAATAACTCTGCTGCCATT V V C S F S N I L L A R G D N N S A A I L Y A L S A T S C L R V V I I T L L P F C C M L F Q Q H L A C A W - - - L C C H . . . . . . 34518 CTTGCTATCCGGAAATGCTCTTTTCAAACTCTCTCATGCTTCTCTCTGCCATATATCATC L A I R K C S F Q T L S C F S L P Y I I L L S G N A L F K L S H A S L C H I S S S C Y P E M L F S N S L M L L S A I Y H . . . . . . 34458 AACCACCACAAGGTATTTGCGTTTTTTTAAAAGATTACGAAGGTAAATTTCTAGATCTCT N H H K V F A F F - K I T K V N F - I S T T T R Y L R F F K R L R R - I S R S L Q P P Q G I C V F L K D Y E G K F L D L . . . . . . 34398 CTCTGTCATCCTTTCCAACAAATCTAGAGTTTCCTTGGTGCAACCTTGGATGGATTTTAT L C H P F Q Q I - S F L G A T L D G F Y S V I L S N K S R V S L V Q P W M D F M S L S S F P T N L E F P W C N L G W I L . . . . . . 34338 GATATACCTGAGGAGATCCACAGTGTTGTACTCTTGAGAAACACATATCCAAGCTCGTGT D I P E E I H S V V L L R N T Y P S S C I Y L R R S T V L Y S - E T H I Q A R V - Y T - G D P Q C C T L E K H I S K L V . . . . . . 34278 ATGGAAGCTATTGACTATATCAGGACTGATGTAGAGATTTCTTGCAAGAGTGGTCTTGC M E A I D Y I R T D V E I S C K S G L W K L L T I S G L M - R F L A R V V L Y G S Y - L Y Q D - C R D F L Q E W S C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-6_AGS-4_PPS_1 (34835 34413) (frame '2'; 420 bp, 140 residues) 1 EISIESSSMF FQRRSFTFFH SPGPLLCESS PLNTTIARGK PPHLSTISLA SLSIVEVIAR 61 TSSSFLQKRS QLSSWFRKRS LWTKPLLYAL SATSCLRVVI ITLLPFLLSG NALFKLSHAS 121 LCHISSTTTR YLRFFKRLRR - 3-phase translation of AGS-4 (+strand): . . . . . . 34220 GCAAGACCACTCTTGCAAGAAATCTCTACATCAGTCCTGATATAGTCAATAGCTTCCATA A R P L L Q E I S T S V L I - S I A S I Q D H S C K K S L H Q S - Y S Q - L P Y K T T L A R N L Y I S P D I V N S F H . . . . . . 34280 CACGAGCTTGGATATGTGTTTCTCAAGAGTACAACACTGTGGATCTCCTCAGGTATATCA H E L G Y V F L K S T T L W I S S G I S T S L D M C F S R V Q H C G S P Q V Y H T R A W I C V S Q E Y N T V D L L R Y I . . . . . . 34340 TAAAATCCATCCAAGGTTGCACCAAGGAAACTCTAGATTTGTTGGAAAGGATGACAGAGA - N P S K V A P R K L - I C W K G - Q R K I H P R L H Q G N S R F V G K D D R E I K S I Q G C T K E T L D L L E R M T E . . . . . . 34400 GAGATCTAGAAATTTACCTTCGTAATCTTTTAAAAAAACGCAAATACCTTGTGGTGGTTG E I - K F T F V I F - K N A N T L W W L R S R N L P S - S F K K T Q I P C G G - R D L E I Y L R N L L K K R K Y L V V V . . . . . . 34460 ATGATATATGGCAGAGAGAAGCATGAGAGAGTTTGAAAAGAGCATTTCCGGATAGCAAGA M I Y G R E K H E R V - K E H F R I A R - Y M A E R S M R E F E K S I S G - Q E D D I W Q R E A - E S L K R A F P D S K . . . . . . 34520 ATGGCAGCAGAGTTATTATCACCACGCGCAAGCAAGATGTTGCTGAAAGAGCATACAACA M A A E L L S P R A S K M L L K E H T T W Q Q S Y Y H H A Q A R C C - K S I Q Q N G S R V I I T T R K Q D V A E R A Y N . . . . . . 34580 GAGGTTTCGTCCATAAACTTCGTTTCCTAAACCAAGAAGAAAGTTGGGATCTCTTTTGCA E V S S I N F V S - T K K K V G I S F A R F R P - T S F P K P R R K L G S L L Q R G F V H K L R F L N Q E E S W D L F C . . . . . . 34640 GGAAACTACTTGATGTTCGAGCAATGACCTCCACAATGGAGAGGCTAGCTAAGGATATGG G N Y L M F E Q - P P Q W R G - L R I W E T T - C S S N D L H N G E A S - G Y G R K L L D V R A M T S T M E R L A K D M . . . . . . 34700 TGGATAAGTGTGGAGGCTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCGCATA W I S V E A Y L L Q L L Y - A D Y F R I G - V W R L T S C N C C I E R T T F A - V D K C G G L P L A I V V L S G L L S H . . . . . . 34760 AAAGGGGGCCAGGCGAATGGAAAAAGGTGAAAGACCGCCTTTGGAAGAACATTGAAGAAG K G G Q A N G K R - K T A F G R T L K K K G A R R M E K G E R P P L E E H - R R K R G P G E W K K V K D R L W K N I E E . . . . . . 34820 ACTCTATTGAAATCTCCTACATACTATCATTAAGCTACAATGATTTGTCAACTGAGCTCA T L L K S P T Y Y H - A T M I C Q L S S L Y - N L L H T I I K L Q - F V N - A Q D S I E I S Y I L S L S Y N D L S T E L . . . . . . 34880 AGCAGTGTTTTCTCTACTTCGGTATTTTTCCAGAAGATCAAGAGCTCGAGGCTGAAAAC S S V F S T S V F F Q K I K S S R L K A V F S L L R Y F S R R S R A R G - K K Q C F L Y F G I F P E D Q E L E A E N Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-6_AGS-4_PPS_1 (34486 34938) (frame '0'; 453 bp, 151 residues) 1 ESLKRAFPDS KNGSRVIITT RKQDVAERAY NRGFVHKLRF LNQEESWDLF CRKLLDVRAM 61 TSTMERLAKD MVDKCGGLPL AIVVLSGLLS HKRGPGEWKK VKDRLWKNIE EDSIEISYIL 121 SLSYNDLSTE LKQCFLYFGI FPEDQELEAE N >C04HBa0127E11.1+_PGL-6_AGS-4_PPS_2 (34222 34485) (frame '0'; 261 bp, 87 residues) 1 KTTLARNLYI SPDIVNSFHT RAWICVSQEY NTVDLLRYII KSIQGCTKET LDLLERMTER 61 DLEIYLRNLL KKRKYLVVVD DIWQREA- PGL 7 (+ strand): 39126 39846 AGS-1 (39126 39846) SCR (e 0.930) Exon 1 39126 39846 ( 721 n); score: 0.930 PGS (39126 39712) SGN-E308984+ PGS (39209 39846) SGN-E255576- PGS (39381 39846) SGN-E258424- PGS (39456 39846) SGN-E258522- 3-phase translation of AGS-1 (+strand): . . . . . . 39126 GCAAGACCACTCTTGCAAGAAACCTTTACATCAATCCTAATATAGCCTCTAGCTTCTCTA A R P L L Q E T F T S I L I - P L A S L Q D H S C K K P L H Q S - Y S L - L L Y K T T L A R N L Y I N P N I A S S F S . . . . . . 39186 CACACGCTTGGATATGTGTTTCTCAAGAGTATAACACAATGGATCTTCTTAAAACTATTA H T L G Y V F L K S I T Q W I F L K L L T R L D M C F S R V - H N G S S - N Y Y T H A W I C V S Q E Y N T M D L L K T I . . . . . . 39246 TAAAATCCATCCGAGGTCGCACCAAGGAAACTCTGGATTTGTTGGAAAAGATGGATGAAA - N P S E V A P R K L W I C W K R W M K K I H P R S H Q G N S G F V G K D G - K I K S I R G R T K E T L D L L E K M D E . . . . . . 39306 GAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTCGTGGTGGTTG E I - K T T F V I Y - K N A N T S W W L R S R K P P S - S I E R T Q I P R G G - R D L E N H L R D L L K E R K Y L V V V . . . . . . 39366 ATGATGTCTGGCAGAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGGCAAGA M M S G R E K H G R V - K E H S R M A R - C L A E R S M G E F E K S I P G W Q E D D V W Q R E A W E S L K R A F P D G K . . . . . . 39426 ATGGCAGCAGAGTCATTGTTACCACGCGCAAAGAGGATGTCGCTGAAAGAGCAGCCGACA M A A E S L L P R A K R M S L K E Q P T W Q Q S H C Y H A Q R G C R - K S S R Q N G S R V I V T T R K E D V A E R A A D . . . . . . 39486 GAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCACTTTCTTA E V L F I N F V S - V K K K V G I T F L R F C S - T S F P K S R R K L G S L S - R G F V H K L R F L S Q E E S W D H F L . . . . . . 39546 GGAAACTACTTGATGTTCGAGCAATGGTTCCAGAAATGGAAAGTCTAGCTAAGGATATGG G N Y L M F E Q W F Q K W K V - L R I W E T T - C S S N G S R N G K S S - G Y G R K L L D V R A M V P E M E S L A K D M . . . . . . 39606 TGGAAAAAGTGTAGAGGCTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCACAT W K K C R G L P L A I V V L S G L L S H G K S V E A Y L L Q L L Y - A D Y F H I V E K V - R L T S C N C C I E R T T F T . . . . . . 39666 AAAAAGGAGCTAGATGAATGGCAAAAGGTGAAAGACCACCTTTGGAAGAACATTAAAGAT K K E L D E W Q K V K D H L W K N I K D K R S - M N G K R - K T T F G R T L K M - K G A R - M A K G E R P P L E E H - R . . . . . . 39726 GACTCTACTGAAATCTCCTACATACTATCATTAAGCTACAACGATTTGTCAACTGCACTC D S T E I S Y I L S L S Y N D L S T A L T L L K S P T Y Y H - A T T I C Q L H S - L Y - N L L H T I I K L Q R F V N C T . . . . . . 39786 AAGCAGTGTTTTCTCTACTTTGGTATTTTTCCAGAAGATCAAGAGCTCGAGGCTGAAAAC K Q C F L Y F G I F P E D Q E L E A E N S S V F S T L V F F Q K I K S S R L K T Q A V F S L L W Y F S R R S R A R G - K . 39846 A Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-7_AGS-1_PPS_1 (39128 39619) (frame '0'; 489 bp, 163 residues) 1 KTTLARNLYI NPNIASSFST HAWICVSQEY NTMDLLKTII KSIRGRTKET LDLLEKMDER 61 DLENHLRDLL KERKYLVVVD DVWQREAWES LKRAFPDGKN GSRVIVTTRK EDVAERAADR 121 GFVHKLRFLS QEESWDHFLR KLLDVRAMVP EMESLAKDMV EKV- >C04HBa0127E11.1+_PGL-7_AGS-1_PPS_2 (39594 39845) (frame '1'; 252 bp, 84 residues) 1 LRIWWKKCRG LPLAIVVLSG LLSHKKELDE WQKVKDHLWK NIKDDSTEIS YILSLSYNDL 61 STALKQCFLY FGIFPEDQEL EAEN 3-phase translation of AGS-1 (-strand): . . . . . . 39846 TGTTTTCAGCCTCGAGCTCTTGATCTTCTGGAAAAATACCAAAGTAGAGAAAACACTGCT C F Q P R A L D L L E K Y Q S R E N T A V F S L E L L I F W K N T K V E K T L L F S A S S S - S S G K I P K - R K H C . . . . . . 39786 TGAGTGCAGTTGACAAATCGTTGTAGCTTAATGATAGTATGTAGGAGATTTCAGTAGAGT - V Q L T N R C S L M I V C R R F Q - S E C S - Q I V V A - - - Y V G D F S R V L S A V D K S L - L N D S M - E I S V E . . . . . . 39726 CATCTTTAATGTTCTTCCAAAGGTGGTCTTTCACCTTTTGCCATTCATCTAGCTCCTTTT H L - C S S K G G L S P F A I H L A P F I F N V L P K V V F H L L P F I - L L F S S L M F F Q R W S F T F C H S S S S F . . . . . . 39666 TATGTGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTTCC Y V K V V R S I Q Q L Q E V S L Y T F S M - K - S A Q Y N N C K R - A S T L F P L C E S S P L N T T I A R G K P L H F F . . . . . . 39606 ACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCATTGCTCGAACATCAAGTAGTTTC T I S L A R L S I S G T I A R T S S S F P Y P - L D F P F L E P L L E H Q V V S H H I L S - T F H F W N H C S N I K - F . . . . . . 39546 CTAAGAAAGTGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCT L R K - S Q L S S - L R K R S L - T K P - E S D P N F L L D L G N E V Y E Q N L P K K V I P T F F L T - E T K F M N K T . . . . . . 39486 CTGTCGGCTGCTCTTTCAGCGACATCCTCTTTGCGCGTGGTAACAATGACTCTGCTGCCA L S A A L S A T S S L R V V T M T L L P C R L L F Q R H P L C A W - Q - L C C H S V G C S F S D I L F A R G N N D S A A . . . . . . 39426 TTCTTGCCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTCTGCCAGACATCA F L P S G N A L F K L S H A S L C Q T S S C H P G M L F S N S P M L L S A R H H I L A I R E C S F Q T L P C F S L P D I . . . . . . 39366 TCAACCACCACGAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCT S T T T R Y L R S F N R S R R W F S R S Q P P R G I C V L S I D H E G G F L D L I N H H E V F A F F Q - I T K V V F - I . . . . . . 39306 CTTTCATCCATCTTTTCCAACAAATCCAGAGTTTCCTTGGTGCGACCTCGGATGGATTTT L S S I F S N K S R V S L V R P R M D F F H P S F P T N P E F P W C D L G W I L S F I H L F Q Q I Q S F L G A T S D G F . . . . . . 39246 ATAATAGTTTTAAGAAGATCCATTGTGTTATACTCTTGAGAAACACATATCCAAGCGTGT I I V L R R S I V L Y S - E T H I Q A C - - F - E D P L C Y T L E K H I S K R V Y N S F K K I H C V I L L R N T Y P S V . . . . . . 39186 GTAGAGAAGCTAGAGGCTATATTAGGATTGATGTAAAGGTTTCTTGCAAGAGTGGTCTTG V E K L E A I L G L M - R F L A R V V L - R S - R L Y - D - C K G F L Q E W S C C R E A R G Y I R I D V K V S C K S G L . 39126 C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-7_AGS-1_PPS_1 (39495 39208) (frame '1'; 285 bp, 95 residues) 1 TKPLSAALSA TSSLRVVTMT LLPFLPSGNA LFKLSHASLC QTSSTTTRYL RSFNRSRRWF 61 SRSLSSIFSN KSRVSLVRPR MDFIIVLRRS IVLYS- PGL 8 (- strand): 45552 42793 AGS-1 (45552 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42793) SCR (e 1.000 d 0.908 a 0.999,e 1.000 d 0.750 a 0.977,e 1.000 d 0.998 a 0.620,e 1.000 d 0.998 a 0.950,e 1.000 d 0.999 a 0.992,e 1.000) Exon 1 45552 45363 ( 190 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 Pa: 0.999 Exon 2 44819 44754 ( 66 n); score: 1.000 Intron 2 44753 44336 ( 418 n); Pd: 0.750 Pa: 0.977 Exon 3 44335 44261 ( 75 n); score: 1.000 Intron 3 44260 43812 ( 449 n); Pd: 0.998 Pa: 0.620 Exon 4 43811 43688 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 Pa: 0.950 Exon 5 43601 43479 ( 123 n); score: 1.000 Intron 5 43478 43326 ( 153 n); Pd: 0.999 Pa: 0.992 Exon 6 43325 42793 ( 533 n); score: 1.000 PGS (43733 43688,43601 43479,43325 42793) SGN-E369657- PGS (44792 44754,44335 44261,43811 43688,43601 43479,43325 42833) SGN-E546310- PGS (43701 43688,43601 43479,43325 42838) SGN-E353373+ PGS (43562 43479,43325 42867) SGN-E240622+ PGS (43289 42872) SGN-E288262+ PGS (43195 42910) SGN-E234972- PGS (43057 42910) SGN-E234684- PGS (44819 44754,44335 44261,43811 43688,43601 43479,43325 42921) SGN-E540533- PGS (45524 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43098) SGN-E540536+ PGS (45447 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43122) SGN-E369658+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43161) SGN-E213384+ PGS (45401 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43198) SGN-E267684+ PGS (45447 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43227) SGN-E248848+ PGS (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43250) SGN-E268276+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43264) SGN-E342279+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43284) SGN-E325293+ PGS (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43303) SGN-E316469+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43305) SGN-E391665+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43492) SGN-E314036+ PGS (45552 45363,44819 44754,44335 44261,43811 43688,43601 43505) SGN-E336151+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43506) SGN-E247388+ PGS (45523 45363,44819 44754,44335 44261,43811 43688,43601 43515) SGN-E290360+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43548) SGN-E378266+ PGS (45401 45363,44819 44754,44335 44261,43811 43688,43601 43558) SGN-E267651+ PGS (45479 45363,44819 44754,44335 44261,43811 43688,43601 43589) SGN-E287107+ 3-phase translation of AGS-1 (-strand): . . . . . . 45552 TCACTTTCAGTACTGTGGAATTTGGGTTTTTAGGGTTTATGAAAATGCAGAGGTGCTGTT S L S V L W N L G F - G L - K C R G A V H F Q Y C G I W V F R V Y E N A E V L F T F S T V E F G F L G F M K M Q R C C . . . . . . 45492 CATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAG H L R - V N D G F L H S T M I K L W L Q I C D R - T M V F F I Q Q - - N C G F S S S A I G K R W F S S F N N D K I V A S . . . . . . 45432 TGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTC C S L K D Y R - W Y P K S I L L Y M L F A L - K I T G S G T Q N R S Y C I C F S V L F E R L P V V V P K I D P T V Y A F . : . . . . . 45372 AAGAATTTTC : GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGA K N F : R F V G G S N I G E S I Q K V F - R I F : V S L E A A I S A R V S R K F S E Q E F S : F R W R Q Q Y R R E Y P E S F L . . : . . . . 44769 AGAAGTCTGATACCAG : GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAA R S L I P : G E K V I I K L I I N Q L L E E V - Y Q : G K R - L S N - L - T S S S N K K S D T R : G K G D Y Q I D Y K P A P R . . . . : . . 44291 TCTCAGAAGCAGATAAGACTAATGATCAAAG : GTCATTACAGCGAGCACTAGACAAGAGAC S Q K Q I R L M I K : G H Y S E H - T R D L R S R - D - - S K : V I T A S T R Q E T I S E A D K T N D Q R : S L Q R A L D K R . . . . . . 43782 TCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTG S I F - S M V P H K V V E S L S G I S L L S S S P W Y H T R - W K A C L A F P - L Y L L V H G T T Q G S G K P V W H F P . . . . : . . 43722 AAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG : TGTGCTGAGTCTGCCTTAGAATCTT K K F M S L K R I C A S : V L S L P - N L K S L - V - R E F A Q : V C - V C L R I F E K V Y E S E E N L R K : C A E S A L E S . . . . . . 43576 TCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCA S L E I F H I H I L L E M P L W V I W S H W R S F T Y I F C W K C P Y G S Y G H F I G D L S H T Y F V G N A P M G H M V . . . . : . . 43516 TGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG : CGCTTCTTCTTCAAATCCCAAG C N P L K T R K S L Q S S : A S S S N P K A T H - R Q E N P F N Q : A L L L Q I P S M Q P T E D K K I P S I K : R F F F K S Q . . . . . . 43303 TTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAG L L Q P T N L I L G N V M I L S G - P K Y C S Q Q I - Y - E M - - F C L G D Q R V I A A N K F D I R K C D D F V W V T K . . . . . . 43243 ATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCT M N C W N T F P S K L N S - T R - S S A - T V G I L S R A S - I P E Q D D H Q L D E L L E Y F P E Q A E F L N K M I I S . . . . . . 43183 GACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGA D V S F C S N F R L R R I A E I V L I - T L V S A Q T S G F V G - R K - F - S E - R - F L L K L Q A S - D S G N S F D L . . . . . . 43123 AAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGT K I H F F P Q M Q W A W T A G D - F L C K S I S S R K C N G L G L L E T D F Y V K N P F L P A N A M G L D C W R L I F M . . . . . . 43063 CTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATAC L D S L T S M P F I K S C R I L N I G Y S T V - L A C H S S S P V E F - T - D T S R Q S D - H A I H Q V L - N F E H R I . . . . . . 43003 CTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCT L N Y D S L L P Q L S P I L F V R S Y A - I M I A F C L S Y H Q S S L - E A M L P K L - - P S A S A I T N P L C E K L C . . . . . . 42943 AAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTC K N S E I V M N F S M N M L L - M H D F K T L K - S - I L V - I C F C R C T I S - K L - N S H E F - Y E Y A F V D A R F . . . . . . 42883 ATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGC I S R H K I N K T N Y M L Q P - R V A S S R V I K - T K Q I T C C S L N E L R A H L A S - N K Q N K L H V A A L T S C E . . . . 42823 TTTGTTTCATAGCTGCATTGTGCATAGAGAA F V S - L H C A - R L F H S C I V H R E L C F I A A L C I E Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-8_AGS-1_PPS_1 (45550 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43182) (frame '0'; 717 bp, 239 residues) 1 TFSTVEFGFL GFMKMQRCCS SAIGKRWFSS FNNDKIVASV LFERLPVVVP KIDPTVYAFQ 61 EFSFRWRQQY RREYPESFLK KSDTRGKGDY QIDYKPAPRI SEADKTNDQR SLQRALDKRL 121 YLLVHGTTQG SGKPVWHFPE KVYESEENLR KCAESALESF IGDLSHTYFV GNAPMGHMVM 181 QPTEDKKIPS IKRFFFKSQV IAANKFDIRK CDDFVWVTKD ELLEYFPEQA EFLNKMIIS- AGS-2 (45512 44980) SCR (e 0.913) Exon 1 45512 44980 ( 533 n); score: 0.913 PGS (45512 44980) SGN-E546270+ 3-phase translation of AGS-2 (-strand): . . . . . . 45512 GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAA E N A E V L F I C D R - T M V F F I Q Q K M Q R C C S S A I G K R W F S S F N N K C R G A V H L R - V N D G F L H S T . . . . . . 45452 TGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGA - - N C G F S A L - K I T G S G T Q N R D K I V A S V L F E R L P V V V P K I D M I K L W L Q C S L K D Y R - W Y P K S . . . . . . 45392 TCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTG S Y C I C F S R I F V S F F F F S V Q L P T V Y A F Q E F S - V F S F F L F N C I L L Y M L F K N F R K F F L F F C S I . . . . . . 45332 TTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTT L H E I E V - S I P F V I Q L Q - F T F C T K S K C N Q S L L - S N Y N D L L L V A R N R S V I N P F C N P I T M I Y F . . . . . . 45272 AGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTT R A I I A G S Y N R M I K T F T S V D F E R - L L V R I I E - S K H L L V L I F - S D N C W F V - - N D Q N I Y - C - F . . . . . . 45212 TTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGT F F R F S E T V L V N - G L R G T L I C F F A F Q K L C W L I R D - G V L - Y V F F S L F R N C A G - L G I K G Y F D M . . . . . . 45152 TTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTAT L L E K N S A K K Q - F Y A L V R S N Y C L R K I V L K N N N F M P - S G Q I M F A - E K - C - K T I I L C L S Q V K L . . . . . . 45092 GAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTT E S S L F C K F D E V N L R K K I V S F N L R Y F V S L M K - I Y E R K - F L L - I F A I L - V - - S K S T K E N S F F . . . . . . 45032 GTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT V Q N F A V V S N A - E I M C N E S K I L Q W F L M L R R - C V M K C P K F C S G F - C L G D N V - - S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 44980 ACTTCATTACACATTATCTCCTAAGCATTAGAAACCACTGCAAAATTTTGGACAAAAGAA T S L H I I S - A L E T T A K F W T K E L H Y T L S P K H - K P L Q N F G Q K K F I T H Y L L S I R N H C K I L D K R . . . . . . 45040 ACTATTTTCTTTCGTAGATTTACTTCATCAAACTTACAAAATAGCGAAGATTCATAATTT T I F F R R F T S S N L Q N S E D S - F L F S F V D L L H Q T Y K I A K I H N L N Y F L S - I Y F I K L T K - R R F I I . . . . . . 45100 GACCTGACTAAGGCATAAAATTATTGTTTTTTAGCACTATTTTTCTCAAGCAAACATATC D L T K A - N Y C F L A L F F S S K H I T - L R H K I I V F - H Y F S Q A N I S - P D - G I K L L F F S T I F L K Q T Y . . . . . . 45160 AAAGTACCCCTTAATCCCTAATTAACCAGCACAGTTTCTGAAAAGCGAAAAAAAAAATCA K V P L N P - L T S T V S E K R K K K S K Y P L I P N - P A Q F L K S E K K N Q Q S T P - S L I N Q H S F - K A K K K I . . . . . . 45220 ACACTAGTAAATGTTTTGATCATTCTATTATACGAACCAGCAATTATCGCTCTAAAAGTA T L V N V L I I L L Y E P A I I A L K V H - - M F - S F Y Y T N Q Q L S L - K - N T S K C F D H S I I R T S N Y R S K S . . . . . . 45280 AATCATTGTAATTGGATTACAAAAGGGATTGATTACACTTCGATTTCGTGCAACAATTGA N H C N W I T K G I D Y T S I S C N N - I I V I G L Q K G L I T L R F R A T I E K S L - L D Y K R D - L H F D F V Q Q L . . . . . . 45340 ACAGAAAAAAAGAAAAAACTTACGAAAATTCTTGAAAAGCATATACAGTAGGATCGATTT T E K K K K L T K I L E K H I Q - D R F Q K K R K N L R K F L K S I Y S R I D F N R K K E K T Y E N S - K A Y T V G S I . . . . . . 45400 TGGGTACCACTACCGGTAATCTTTCAAAGAGCACTGAAGCCACAATTTTATCATTGTTGA W V P L P V I F Q R A L K P Q F Y H C - G Y H Y R - S F K E H - S H N F I I V E L G T T T G N L S K S T E A T I L S L L . . . . . . 45460 ATGAAGAAAACCATCGTTTACCTATCGCAGATGAACAGCACCTCTGCATTTTC M K K T I V Y L S Q M N S T S A F - R K P S F T Y R R - T A P L H F N E E N H R L P I A D E Q H L C I F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (+ strand): 47789 48513 AGS-1 (47789 48513) SCR (e 1.000) Exon 1 47789 48513 ( 725 n); score: 1.000 PGS (47789 48374) SGN-E308984+ PGS (47872 48512) SGN-E255576- PGS (48044 48512) SGN-E258424- PGS (48119 48513) SGN-E258522- 3-phase translation of AGS-1 (+strand): . . . . . . 47789 GCAAGACCACTCTTGCAAGAAACCTCTACAAAAATCCTAATATATCCTCTCGCTTCCCTA A R P L L Q E T S T K I L I Y P L A S L Q D H S C K K P L Q K S - Y I L S L P Y K T T L A R N L Y K N P N I S S R F P . . . . . . 47849 CACACGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCA H T L G Y V F L K S T T Q W I F L R L S T R L D M C F S R V Q H N G S S - D Y H T H A W I C V S Q E Y N T M D L L K T I . . . . . . 47909 TAAAATCCATCCAAGGTCGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAA - N P S K V A P W E L - D C W K R W M K K I H P R S H H G N S R I V G K D G - K I K S I Q G R T M G T L G L L E K M D E . . . . . . 47969 GAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTTGTGGTGGTTG E I - K T T F V I Y - K N A N T L W W L R S R K P P S - S I E R T Q I P C G G - R D L E N H L R D L L K E R K Y L V V V . . . . . . 48029 ATGATGTCTGGCAAAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGACAAGA M M S G K E K H G R V - K E H S R M T R - C L A K R S M G E F E K S I P G - Q E D D V W Q R E A W E S L K R A F P D D K . . . . . . 48089 ATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATATCGCTGAAAGAGCAGCCGACA M A A E S L L P R A K R I S L K E Q P T W Q Q S H Y Y H A Q R G Y R - K S S R Q N G S R V I I T T R K E D I A E R A A D . . . . . . 48149 GAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCTTA E V L F I N F V S - V K K K V G I S F L R F C S - T S F P K S R R K L G S L S - R G F V H K L R F L S Q E E S W D L F L . . . . . . 48209 GGAAACTACTTGATGTTCGAGCAATGGTTGCAGAAATGGAAAGTCTAGCTAAGGATATGG G N Y L M F E Q W L Q K W K V - L R I W E T T - C S S N G C R N G K S S - G Y G R K L L D V R A M V A E M E S L A K D M . . . . . . 48269 TGGAAAAGTGTAGAGGTTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCGCATA W K S V E V Y L L Q L L Y - A D Y F R I G K V - R F T S C N C C I E R T T F A - V E K C R G L P L A I V V L S G L L S H . . . . . . 48329 AAAAGGATCTAGATGAATGGCAAAAGGTGAAAGATCACCTTTGGAAGAGCATTAAAGAAG K R I - M N G K R - K I T F G R A L K K K G S R - M A K G E R S P L E E H - R R K K D L D E W Q K V K D H L W K S I K E . . . . . . 48389 ATAAATCTGTTGAAATCTCCAACATACTATCACTAAGCTACAATGATTTGTCAATTGAGC I N L L K S P T Y Y H - A T M I C Q L S - I C - N L Q H T I T K L Q - F V N - A D K S V E I S N I L S L S Y N D L S I E . . . . . . 48449 TCAAGCAGTGTTTTCTCTACTTTGGTATGTTTCCAGAAGATCGAGTGGTCAAGGCTGAAA S S S V F S T L V C F Q K I E W S R L K Q A V F S L L W Y V S R R S S G Q G - K L K Q C F L Y F G M F P E D R V V K A E . 48509 ACACA T H N T Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-9_AGS-1_PPS_1 (47791 48513) (frame '0'; 723 bp, 241 residues) 1 KTTLARNLYK NPNISSRFPT HAWICVSQEY NTMDLLKTII KSIQGRTMGT LGLLEKMDER 61 DLENHLRDLL KERKYLVVVD DVWQREAWES LKRAFPDDKN GSRVIITTRK EDIAERAADR 121 GFVHKLRFLS QEESWDLFLR KLLDVRAMVA EMESLAKDMV EKCRGLPLAI VVLSGLLSHK 181 KDLDEWQKVK DHLWKSIKED KSVEISNILS LSYNDLSIEL KQCFLYFGMF PEDRVVKAEN 241 T 3-phase translation of AGS-1 (-strand): . . . . . . 48513 TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTG C V F S L D H S I F W K H T K V E K T L V F S A L T T R S S G N I P K - R K H C C F Q P - P L D L L E T Y Q S R E N T . . . . . . 48453 CTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGA L E L N - Q I I V A - - - Y V G D F N R L S S I D K S L - L S D S M L E I S T D A - A Q L T N H C S L V I V C W R F Q Q . . . . . . 48393 TTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATC F I F F N A L P K V I F H L L P F I - I L S S L M L F Q R - S F T F C H S S R S I Y L L - C S S K G D L S P F A I H L D . . . . . . 48333 CTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTT L F M R K - S A Q Y N N C K R - T S T L F L C E S S P L N T T I A R G K P L H F P F Y A K V V R S I Q Q L Q E V N L Y T . . . . . . 48273 TTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAG F H H I L S - T F H F C N H C S N I K - S T I S L A R L S I S A T I A R T S S S F P P Y P - L D F P F L Q P L L E H Q V . . . . . . 48213 TTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAA F P K K E I P T F F L T - E T K F M N K F L R K R S Q L S S - L R K R S L - T K V S - E R D P N F L L D L G N E V Y E Q . . . . . . 48153 ACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCT T S V G C S F S D I L F A R G N N D S A P L S A A L S A I S S L R V V I M T L L N L C R L L F Q R Y P L C A W - - - L C . . . . . . 48093 GCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGAC A I L V I R E C S F Q T L P C F S L P D P F L S S G N A L F K L S H A S L C Q T C H S C H P G M L F S N S P M L L F A R . . . . . . 48033 ATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAG I I N H H K V F A F F Q - I T K V V F - S S T T T R Y L R S F N R S R R W F S R H H Q P P Q G I C V L S I D H E G G F L . . . . . . 47973 ATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGA I S F I H L F Q Q S - S S H G A T L D G S L S S I F S N N P R V P M V R P W M D D L F H P S F P T I L E F P W C D L G W . . . . . . 47913 TTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGC F Y D S L K K I H C V V L L R N T Y P S F M I V L R R S I V L Y S - E T H I Q A I L - - S - E D P L C C T L E K H I S K . . . . . . 47853 GTGTGTAGGGAAGCGAGAGGATATATTAGGATTTTTGTAGAGGTTTCTTGCAAGAGTGGT V C R E A R G Y I R I F V E V S C K S G C V G K R E D I L G F L - R F L A R V V R V - G S E R I Y - D F C R G F L Q E W . 47793 CTTGC L L S C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-9_AGS-1_PPS_1 (48158 47871) (frame '2'; 285 bp, 95 residues) 1 TKPLSAALSA ISSLRVVIMT LLPFLSSGNA LFKLSHASLC QTSSTTTRYL RSFNRSRRWF 61 SRSLSSIFSN NPRVPMVRPW MDFMIVLRRS IVLYS- PGL 10 (+ strand): 52342 52924 AGS-1 (52342 52924) SCR (e 0.855) Exon 1 52342 52924 ( 583 n); score: 0.855 PGS (52342 52924) SGN-E308984+ 3-phase translation of AGS-1 (+strand): . . . . . . 52342 GCACGACAACTCTTGCGAGAAACCTATACATCAGTTCTACTATAATCTCTAGCTTCCCTA A R Q L L R E T Y T S V L L - S L A S L H D N S C E K P I H Q F Y Y N L - L P Y T T T L A R N L Y I S S T I I S S F P . . . . . . 52402 CACGTGCTTGGATATGTGTTTCTCAAGAGTACAACACCATGGATCTCCTTAGGAATATCA H V L G Y V F L K S T T P W I S L G I S T C L D M C F S R V Q H H G S P - E Y H T R A W I C V S Q E Y N T M D L L R N I . . . . . . 52462 TAAAATCCATCCAAGGTTGCACCAAGGAAACTCTAGATTTGTTGGAAAAGATGACAGAGA - N P S K V A P R K L - I C W K R - Q R K I H P R L H Q G N S R F V G K D D R D I K S I Q G C T K E T L D L L E K M T E . . . . . . 52522 TCGATCTAGAAATTTACCTTCGTGATCTTTTAAAAGAACCCAAATACCTTGTGGTGGTCG S I - K F T F V I F - K N P N T L W W S R S R N L P S - S F K R T Q I P C G G R I D L E I Y L R D L L K E P K Y L V V V . . . . . . 52582 ATGATTTATGGCATAGAGAAGCATGGGAAAGTTTGAAACGGGCATTTCCAGATAGCAAGA M I Y G I E K H G K V - N G H F Q I A R - F M A - R S M G K F E T G I S R - Q E D D L W H R E A W E S L K R A F P D S K . . . . . . 52642 AGGCAGCAGAGTTATTATTACTACACGCAAAGAGGATGTCGCTGAAAGAGCAGATAACAA R Q Q S Y Y Y Y T Q R G C R - K S R - Q G S R V I I T T R K E D V A E R A D N K K A A E L L L L H A K R M S L K E Q I T . . . . . . 52702 AGGTTTTGTCTATAGACTTCGCTTCCTGAGCCAAGAAGAAAGTTGGGATCTCTTTTGTAG R F C L - T S L P E P R R K L G S L L - G F V Y R L R F L S Q E E S W D L F C R K V L S I D F A S - A K K K V G I S F V . . . . . . 52762 GAAACTACTTGATGTTCGGGCAATGGTCTCAGCAATGGAAAGGCTAGCAAAGGAAATGGT E T T - C S G N G L S N G K A S K G N G K L L D V R A M V S A M E R L A K E M V G N Y L M F G Q W S Q Q W K G - Q R K W . . . . . . 52822 GGACAAGTGTGGAGGTTTACCTCTTGCAGTTGTTGTATTAAGAGGACTAATTTCACATAA G Q V W R F T S C S C C I K R T N F T - D K C G G L P L A V V V L R G L I S H K W T S V E V Y L L Q L L Y - E D - F H I . . . . . 52882 AAGGGGGCTAGAAGAATGGGAAAAGGTGAAGTACCACCTTTGG K G A R R M G K G E V P P L R G L E E W E K V K Y H L W K G G - K N G K R - S T T F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-10_AGS-1_PPS_1 (52344 52730) (frame '0'; 384 bp, 128 residues) 1 TTTLARNLYI SSTIISSFPT RAWICVSQEY NTMDLLRNII KSIQGCTKET LDLLEKMTEI 61 DLEIYLRDLL KEPKYLVVVD DLWHREAWES LKRAFPDSKK AAELLLLHAK RMSLKEQITK 121 VLSIDFAS- 3-phase translation of AGS-1 (-strand): . . . . . . 52924 CCAAAGGTGGTACTTCACCTTTTCCCATTCTTCTAGCCCCCTTTTATGTGAAATTAGTCC P K V V L H L F P F F - P P F M - N - S Q R W Y F T F S H S S S P L L C E I S P K G G T S P F P I L L A P F Y V K L V . . . . . . 52864 TCTTAATACAACAACTGCAAGAGGTAAACCTCCACACTTGTCCACCATTTCCTTTGCTAG S - Y N N C K R - T S T L V H H F L C - L N T T T A R G K P P H L S T I S F A S L L I Q Q L Q E V N L H T C P P F P L L . . . . . . 52804 CCTTTCCATTGCTGAGACCATTGCCCGAACATCAAGTAGTTTCCTACAAAAGAGATCCCA P F H C - D H C P N I K - F P T K E I P L S I A E T I A R T S S S F L Q K R S Q A F P L L R P L P E H Q V V S Y K R D P . . . . . . 52744 ACTTTCTTCTTGGCTCAGGAAGCGAAGTCTATAGACAAAACCTTTGTTATCTGCTCTTTC T F F L A Q E A K S I D K T F V I C S F L S S W L R K R S L - T K P L L S A L S N F L L G S G S E V Y R Q N L C Y L L F . . . . . . 52684 AGCGACATCCTCTTTGCGTGTAGTAATAATAACTCTGCTGCCTTCTTGCTATCTGGAAAT S D I L F A C S N N N S A A F L L S G N A T S S L R V V I I T L L P S C Y L E M Q R H P L C V - - - - L C C L L A I W K . . . . . . 52624 GCCCGTTTCAAACTTTCCCATGCTTCTCTATGCCATAAATCATCGACCACCACAAGGTAT A R F K L S H A S L C H K S S T T T R Y P V S N F P M L L Y A I N H R P P Q G I C P F Q T F P C F S M P - I I D H H K V . . . . . . 52564 TTGGGTTCTTTTAAAAGATCACGAAGGTAAATTTCTAGATCGATCTCTGTCATCTTTTCC L G S F K R S R R - I S R S I S V I F S W V L L K D H E G K F L D R S L S S F P F G F F - K I T K V N F - I D L C H L F . . . . . . 52504 AACAAATCTAGAGTTTCCTTGGTGCAACCTTGGATGGATTTTATGATATTCCTAAGGAGA N K S R V S L V Q P W M D F M I F L R R T N L E F P W C N L G W I L - Y S - G D Q Q I - S F L G A T L D G F Y D I P K E . . . . . . 52444 TCCATGGTGTTGTACTCTTGAGAAACACATATCCAAGCACGTGTAGGGAAGCTAGAGATT S M V L Y S - E T H I Q A R V G K L E I P W C C T L E K H I S K H V - G S - R L I H G V V L L R N T Y P S T C R E A R D . . . . . 52384 ATAGTAGAACTGATGTATAGGTTTCTCGCAAGAGTTGTCGTGC I V E L M Y R F L A R V V V - - N - C I G F S Q E L S C Y S R T D V - V S R K S C R Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-10_AGS-1_PPS_1 (52922 52662) (frame '0'; 258 bp, 86 residues) 1 KGGTSPFPIL LAPFYVKLVL LIQQLQEVNL HTCPPFPLLA FPLLRPLPEH QVVSYKRDPN 61 FLLGSGSEVY RQNLCYLLFQ RHPLCV- >C04HBa0127E11.1-_PGL-10_AGS-1_PPS_2 (52710 52459) (frame '2'; 249 bp, 83 residues) 1 TKPLLSALSA TSSLRVVIIT LLPSCYLEMP VSNFPMLLYA INHRPPQGIW VLLKDHEGKF 61 LDRSLSSFPT NLEFPWCNLG WIL- PGL 11 (- strand): 56489 56263 AGS-1 (56489 56263) SCR (e 0.839) Exon 1 56489 56263 ( 227 n); score: 0.839 PGS (56489 56263) SGN-E202522- PGS (56489 56263) SGN-E398306- 3-phase translation of AGS-1 (-strand): . . . . . . 56489 TTTCAAAAAGAATGACCTAGTTTGACTTGGAACGGAGTTTAAGAAAAGAAAGAAGACCTT F Q K E - P S L T W N G V - E K K E D L F K K N D L V - L G T E F K K R K K T F S K R M T - F D L E R S L R K E R R P . . . . . . 56429 TTTATCTTGTGATTCTAAATTAAAATTATGTCAAATGTACCAAAATGTCATTTAATCTTG F I L - F - I K I M S N V P K C H L I L L S C D S K L K L C Q M Y Q N V I - S C F Y L V I L N - N Y V K C T K M S F N L . . . . . . 56369 TGGTCTTAAACATGCCACGTGGAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGT W S - T C H V E S - S - S V A K K G K G G L K H A T W K V K V K V L P K K E R V V V L N M P R G K L K L K C C Q K R K G . . . . . 56309 CATTCTTTTTGAAACAGACTAAAAAGAAAATAGAGTTATTCTTTTTG H S F - N R L K R K - S Y S F I L F E T D - K E N R V I L F S F F L K Q T K K K I E L F F L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 56263 CAAAAAGAATAACTCTATTTTCTTTTTAGTCTGTTTCAAAAAGAATGACCCTTTCCTTTT Q K E - L Y F L F S L F Q K E - P F P F K K N N S I F F L V C F K K N D P F L F K R I T L F S F - S V S K R M T L S F . . . . . . 56323 TTGGCAACACTTTAACTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAATGA L A T L - L - L S T W H V - D H K I K - W Q H F N F N F P R G M F K T T R L N D F G N T L T L T F H V A C L R P Q D - M . . . . . . 56383 CATTTTGGTACATTTGACATAATTTTAATTTAGAATCACAAGATAAAAAGGTCTTCTTTC H F G T F D I I L I - N H K I K R S S F I L V H L T - F - F R I T R - K G L L S T F W Y I - H N F N L E S Q D K K V F F . . . . . 56443 TTTTCTTAAACTCCGTTCCAAGTCAAACTAGGTCATTCTTTTTGAAA F S - T P F Q V K L G H S F - F L K L R S K S N - V I L F E L F L N S V P S Q T R S F F L K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (- strand): 60416 57019 AGS-1 (60416 60382,57679 57019) SCR (e 1.000 d 1.000 a 0.947,e 1.000) Exon 1 60416 60382 ( 35 n); score: 1.000 Intron 1 60381 57680 (2702 n); Pd: 1.000 Pa: 0.947 Exon 2 57679 57019 ( 661 n); score: 1.000 PGS (57580 57019) SGN-E271747+ PGS (57580 57049) SGN-E271623+ PGS (60416 60382,57679 57096) SGN-E329078+ 3-phase translation of AGS-1 (-strand): . . . . : . . 60416 GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG : GGTGTACTTTGAGGAAGGTGAATGC V A D N Q W I F T Y L R : V Y F E E G E C S P I I S G F S P I - : G C T L R K V N A R R - S V D F H L F E : G V L - G R - M . . . . . . 57654 TCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTG S N S S F F L V E K Y I S R - W K L K L Q I R H S F - W K N T S R D D G N - N C L K F V I L F S G K I H L E M M E I E I . . . . . . 57594 CGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAAC R P F T T T Y K L V K L I L S C F R Y N V P L P L R I S W S S - F - V V F G T T A S L Y H Y V - A G Q A D F E L F S V Q . . . . . . 57534 TTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACA F - L E Y S E C P P F S R L S S F Y S T F S L N I L S V L L S L D - V A F T L Q L L A - I F - V S S F L S T E - L L L Y . . . . . . 57474 AGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCG R N S S A R V V L Q K K S N Q N N G - S E I H L L E - F C K R K A I K I M D D R K K F I C - S S S A K E K Q S K - W M I . . . . . . 57414 GGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGC G C S - Q G W N K E V A S V D V C Y I C V V L D K G G T R K L P Q W M F A T S A G L F L T R V E Q G S C L S G C L L H L . . . . . . 57354 TGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGA C - S S K G K S Q N - - S R Q - - Y Y R A D Q V K E K A K T D K V D N N N T T E L L I K - R K K P K L I K - T I I I L Q . . . . . . 57294 GAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATT E G D C H S E T E K - K D - G - K G N I K E I V T Q K Q K N R R I K D K K E T F R R R L S L R N R K I E G L R I K R K H . . . . . . 57234 CACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAA H - G V V H S A S N M P N N K K K Q K K T E E S S T Q L P I C Q T T K R S R R K S L R S R P L S F Q Y A K Q Q K E A E E . . . . . . 57174 ATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGA I K P T K - L L - - - K H F N G E - M - L N L P N D Y C N D E S T S M G S E C D N - T Y Q M I I V M M K A L Q W G V N V . . . . . . 57114 CAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAAC Q Q A S K W - W R G S Y V E E T E T E N S K Q A S G D G E V P M L R R Q K Q K T T A S K Q V V M E R F L C - G D R N R K . . . . 57054 GAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA E E F Q D - E S C - D G K N S K T E R V A E M R R I P R L R E L L R W Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-12_AGS-1_PPS_1 (57452 57021) (frame '2'; 432 bp, 144 residues) 1 FCKRKAIKIM DDRVVLDKGG TRKLPQWMFA TSAADQVKEK AKTDKVDNNN TTEKEIVTQK 61 QKNRRIKDKK ETFTEESSTQ LPICQTTKRS RRKLNLPNDY CNDESTSMGS ECDSKQASGD 121 GEVPMLRRQK QKTKNSKTER VAEM PGL 13 (+ strand): 63536 67974 AGS-1 (63536 64083,67722 67974) SCR (e 1.000 d 0.995 a 1.000,e 1.000) Exon 1 63536 64083 ( 548 n); score: 1.000 Intron 1 64084 67721 (3638 n); Pd: 0.995 Pa: 1.000 Exon 2 67722 67974 ( 253 n); score: 1.000 PGS (63536 64083,67722 67927) SGN-E539888+ PGS (63549 64083,67722 67974) SGN-E539885- PGS (63554 63898) SGN-E288154+ 3-phase translation of AGS-1 (+strand): . . . . . . 63536 TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACT S L S R G V T G V V V S K C R R I M G T R Y R G G - R G - W S P N A G E L W G L V I E G G N G G S G L Q M P A N Y G D . . . . . . 63596 ATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACC I S L D R G L S N - S R I W Q K M I Q T F H W T G V - A I D P E F G R K - S K P Y F I G P G F E Q L I Q N L A E N D P N . . . . . . 63656 GATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTG D M G L L R R R E Q R W R G S L P S K L I W D S S G V E S S G G G A P Y H Q S - R Y G T P P A S R A A V E G L P T I K V . . . . . . 63716 ATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGA M R N - C V L N W H S V L F V R M I L R - G I D A F - T G T V C C L - G - F - D D E E L M R S E L A Q C A V C K D D F E . . . . . . 63776 TGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATAC W G Q M - Y R C L V S M F I I R I V S Y G V R C D T D A L - A C L S - G L Y H T M G S D V I Q M P C K H V Y H K D C I I . . . . . . 63836 CGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGC R G L S C T V L A R F V A M S C Q R M S V A - V A Q F L P G L S L - V A N G - A P W L E L H S S C P V C R Y E L P T D E . . . . . . 63896 CTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTT L R M R T G K E T M M G T R A G M V L L - E - E Q A K R Q - W G L E R G W F C F P E N E N R Q R D N D G D S S G D G S A . . . . . . 63956 CTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAA L E V G D Q G E G L L Q Y H C H G L W E W K W G I R E K V Y Y N I I A M A F G K S G S G G S G R R F T T I S L P W P L G . . . . . . 64016 GCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGT A L E H H L A R D D P S L V G S G T G S L W S I I - P G M I R V S W A A E Q G V S F G A S S S Q G - S E S R G Q R N R E . : . . . . . 64076 CTAATTAG : GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTG L I R : W Y P C L Q V V S W M T K L E E L - L : G G I L A C R L Y H G - Q S W R S C S N - : V V S L L A G C I M D D K V G G V . . . . . . 67774 TTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACA L G R - L E N A T K V K D - V S S L K T W V D N - K M L Q R - R I R F H L L K H V G - I I R K C Y K G K G L G F I S - N . . . . . . 67834 TAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTG - I Q G L H K P Q I V L Q D V C L N V L R Y R V Y T N P R - Y C K M F V - M F C I D T G S T Q T P D S I A R C L S E C F . . . . . . 67894 CATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTT H Q M S K V F I Y A S S I A N F A D C F I R C P K F S F M L H Q S R I L R I V L A S D V Q S F H L C F I N R E F C G L F . . . 67954 AGTCCTTGTGCAGTTGATCTG S P C A V D L V L V Q L I - S L C S - S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-13_AGS-1_PPS_1 (63538 64044) (frame '0'; 504 bp, 168 residues) 1 VIEGGNGGSG LQMPANYGDY FIGPGFEQLI QNLAENDPNR YGTPPASRAA VEGLPTIKVD 61 EELMRSELAQ CAVCKDDFEM GSDVIQMPCK HVYHKDCIIP WLELHSSCPV CRYELPTDEP 121 ENENRQRDND GDSSGDGSAS GSGGSGRRFT TISLPWPLGS FGASSSQG- PGL 14 (+ strand): 78778 80541 AGS-1 (78778 79557) SCR (e 1.000) Exon 1 78778 79557 ( 780 n); score: 1.000 PGS (78778 79258) SGN-E314139+ PGS (78819 79557) SGN-E339484+ PGS (79095 79351) SGN-E541078+ 3-phase translation of AGS-1 (+strand): . . . . . . 78778 GATCTTGTATTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTC D L V F F Y I F V V L G L C F F F F C F I L Y F F T Y L L F W G S V F F F F A S S C I F L H I C C F G A L F F F F L L . . . . . . 78838 CATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTA H E S S F F Y Y L K L Q L N L L Y - F V M N R A F S I T - N F N - T C F I D L - P - I E L F L L L E T S T E P A L L I C . . . . . . 78898 AAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCT K V F F L L L F G V L F N - A L F S R A K F F F F F C L G F C L I E L C F P E L K S F F S S F V W G F V - L S S V F Q S . . . . . . 78958 TGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCA W - I C C F S S L L G F A Q F S S - I P G E F V V F L L C W G L L N S A H K S H L V N L L F F F F V G V C S I Q L I N P . . . . . . 79018 TATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTT Y W C S I W T - F S I I C C F L F V G V I G A L F G P D F Q L F V V F Y L L G F I L V L Y L D L I F N Y L L F F I C W G . . . . . . 79078 TGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTA C S I Q L T I P V L V L Y F G F D F R L A Q F S S Q F P Y - Y S I L D L I F D Y L L N S A H N S R I S T L F W I - F S I . . . . . . 79138 TTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGC L L G F V C - - I L V I F H H Y R F C C C W V L F V D K S - - F S T T T V F A A I V G F C L L I N P S N F P P L P F L L . . . . . . 79198 TAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCT - C F E L L M S T S A E G N G A I I D P S V L S F - C R R L Q R E M E L - L I L L V F - A S N V D V C R G K W S Y N - S . . . . . . 79258 CAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAA Q R Q Q Q Q A P T G V G T N G A L T V K R G N N N R R L L G L V Q M V L - Q - K S E A T T T G A Y W G W Y K W C F N S E . . . . . . 79318 AAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATG K P P V K D R H S K V D G R G R R I R M N R R - K T G I V R L M V E E D V - G C K T A G K R P A - - G - W - R K T Y K D . . . . . . 79378 CCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGAT P I V C A A R V F Q L T R E L G H K S D Q L Y V R Q E F F S L L V N W V I N P M A N C M C G K S F S A Y S - I G S - I R . . . . . . 79438 GGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGT G Q T I E W L L R Q A E P S I I A A T G D K L L N G C F V K L S L Q L - L L L V W T N Y - M A A S S S - A F N Y S C Y W . . . . . . 79498 ACTGGTACTATTCCTGCTAGTTTCTCGACTGTATCTGTATCGGTACGGAACTCAACTGCA T G T I P A S F S T V S V S V R N S T A L V L F L L V S R L Y L Y R Y G T Q L Y W Y Y S C - F L D C I C I G T E L N C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-14_AGS-1_PPS_1 (79201 79557) (frame '1'; 357 bp, 119 residues) 1 CFELLMSTSA EGNGAIIDPQ RQQQQAPTGV GTNGALTVKK PPVKDRHSKV DGRGRRIRMP 61 IVCAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTIPASFSTV SVSVRNSTA >C04HBa0127E11.1+_PGL-14_AGS-1_PPS_2 (78899 79108) (frame '2'; 207 bp, 69 residues) 1 KFFFFFCLGF CLIELCFPEL GEFVVFLLCW GLLNSAHKSH IGALFGPDFQ LFVVFYLLGF 61 AQFSSQFPY- 3-phase translation of AGS-1 (-strand): . . . . . . 79557 TGCAGTTGAGTTCCGTACCGATACAGATACAGTCGAGAAACTAGCAGGAATAGTACCAGT C S - V P Y R Y R Y S R E T S R N S T S A V E F R T D T D T V E K L A G I V P V Q L S S V P I Q I Q S R N - Q E - Y Q . . . . . . 79497 ACCAGTAGCAGCTATAATTGAAGGCTCAGCTTGACGAAGCAGCCATTCAATAGTTTGTCC T S S S Y N - R L S L T K Q P F N S L S P V A A I I E G S A - R S S H S I V C P Y Q - Q L - L K A Q L D E A A I Q - F V . . . . . . 79437 ATCGGATTTATGACCCAATTCACGAGTAAGCTGAAAAACTCTTGCCGCACATACAATTGG I G F M T Q F T S K L K N S C R T Y N W S D L - P N S R V S - K T L A A H T I G H R I Y D P I H E - A E K L L P H I Q L . . . . . . 79377 CATCCTTATACGTCTTCCTCTACCATCAACCTTACTATGCCGGTCTTTTACCGGCGGTTT H P Y T S S S T I N L T M P V F Y R R F I L I R L P L P S T L L C R S F T G G F A S L Y V F L Y H Q P Y Y A G L L P A V . . . . . . 79317 TTTCACTGTTAAAGCACCATTTGTACCAACCCCAGTAGGCGCCTGTTGTTGTTGCCTCTG F H C - S T I C T N P S R R L L L L P L F T V K A P F V P T P V G A C C C C L - F S L L K H H L Y Q P Q - A P V V V A S . . . . . . 79257 AGGATCAATTATAGCTCCATTTCCCTCTGCAGACGTCGACATTAGAAGCTCAAAACACTA R I N Y S S I S L C R R R H - K L K T L G S I I A P F P S A D V D I R S S K H - E D Q L - L H F P L Q T S T L E A Q N T . . . . . . 79197 GCAGCAAAAACGGTAGTGGTGGAAAATTACTAGGATTTATCAACAAACAAAACCCAACAA A A K T V V V E N Y - D L S T N K T Q Q Q Q K R - W W K I T R I Y Q Q T K P N N S S K N G S G G K L L G F I N K Q N P T . . . . . . 79137 TAATCGAAAATCAAATCCAAAATAGAGTACTAATACGGGAATTGTGAGCTGAATTGAGCA - S K I K S K I E Y - Y G N C E L N - A N R K S N P K - S T N T G I V S - I E Q I I E N Q I Q N R V L I R E L - A E L S . . . . . . 79077 AACCCCAACAAATAAAAAACAACAAATAATTGAAAATCAGGTCCAAATAGAGCACCAATA N P N K - K T T N N - K S G P N R A P I T P T N K K Q Q I I E N Q V Q I E H Q Y K P Q Q I K N N K - L K I R S K - S T N . . . . . . 79017 TGGGATTTATGAGCTGAATTGAGCAAACCCCAACAAAGAAGAAAAACAACAAATTCACCA W D L - A E L S K P Q Q R R K T T N S P G I Y E L N - A N P N K E E K Q Q I H Q M G F M S - I E Q T P T K K K N N K F T . . . . . . 78957 AGCTCTGGAAAACAGAGCTCAATTAAACAAAACCCCAAACAAAAGAAGAAAAAAAACTTT S S G K Q S S I K Q N P K Q K K K K N F A L E N R A Q L N K T P N K R R K K T F K L W K T E L N - T K P Q T K E E K K L . . . . . . 78897 TACAAATCAATAAAGCAGGTTCAGTTGAAGTTTCAAGTAATAGAAAAAGCTCGATTCATG Y K S I K Q V Q L K F Q V I E K A R F M T N Q - S R F S - S F K - - K K L D S W L Q I N K A G S V E V S S N R K S S I H . . . . . . 78837 GAAGCAAAAAAAAAAAAAACAGAGCCCCAAAACAACAAATATGTAAAAAAATACAAGATC E A K K K K T E P Q N N K Y V K K Y K I K Q K K K K Q S P K T T N M - K N T R G S K K K K N R A P K Q Q I C K K I Q D Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-14_AGS-1_PPS_1 (79005 78778) (frame '1'; 228 bp, 76 residues) 1 AELSKPQQRR KTTNSPSSGK QSSIKQNPKQ KKKKNFYKSI KQVQLKFQVI EKARFMEAKK 61 KKTEPQNNKY VKKYKI AGS-2 (78787 78886,78917 79501) SCR (e 0.860 d 0.000 a 0.000,e 0.954) Exon 1 78787 78886 ( 100 n); score: 0.860 Intron 1 78887 78916 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 78917 79501 ( 585 n); score: 0.954 PGS (78787 78886,78917 79501) SGN-E545942+ PGS (78787 78886,78917 79215) SGN-E545949+ 3-phase translation of AGS-2 (+strand): . . . . . . 78787 TTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCG F F Y I F V V L G L C F F F F C F H E S F F T Y L L F W G S V F F F F A S M N R F L H I C C F G A L F F F F L L P - I . . . . : . . 78847 AGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTT : TGTTTGGGGTTTTGTTTAAT S F F Y Y L K L Q L N L L : L F G V L F N A F S I T - N F N - T C F : C L G F C L I E L F L L L E T S T E P A F : V W G F V - . . . . . . 78937 TGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCT - A L F S R A W - I C C F S S L L G F A E L C F P E L G E F V V F L L C W G L L L S S V F Q S L V N L L F F F F V G V C . . . . . . 78997 CAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGT Q F S S - I P Y W C S I W T - F S I I C N S A H K S H I G A L F G P D F Q L F V S I Q L I N P I L V L Y L D L I F N Y L . . . . . . 79057 TGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTAT C F L F V G V C S I Q L T I P V L V L Y V F Y L L G F A Q F S S Q F P Y - Y S I L F F I C W G L L N S A H N S R I S T L . . . . . . 79117 TTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTC F G F D F R L L L G F V C - - I L V I F L D L I F D Y C W V L F V D K S - - F S F W I - F S I I V G F C L L I N P S N F . . . . . . 79177 CACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGA H H Y R F C C - C F E L L M S T S A E G T T T V F A A S V L S F - C R R L Q R E P P L P F L L L V F - A S N V D V C R G . . . . . . 79237 AATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACA N G A I I D P Q R Q Q Q Q A P T G V G T M E L - L I L R G N N N R R L L G L V Q K W S Y N - S S E A T T T G A Y W G W Y . . . . . . 79297 AATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGT N G A L T V K K P P V K D R H S K V D G M V L - Q - K N R R - K T G I V R L M V K W C F N S E K T A G K R P A - - G - W . . . . . . 79357 AGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGT R G R R I R M P I V C A A R V F Q L T R E E D V - G C Q L Y V R Q E F F S L L V - R K T Y K D A N C M C G K S F S A Y S . . . . . . 79417 GAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCT E L G H K S D G Q T I E W L L R Q A E P N W V I N P M D K L L N G C F V K L S L - I G S - I R W T N Y - M A A S S S - A . . . 79477 TCAATTATAGCTGCTACTGGTACTG S I I A A T G T Q L - L L L V L F N Y S C Y W Y Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-14_AGS-2_PPS_1 (79201 79500) (frame '1'; 300 bp, 100 residues) 1 CFELLMSTSA EGNGAIIDPQ RQQQQAPTGV GTNGALTVKK PPVKDRHSKV DGRGRRIRMP 61 IVCAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT >C04HBa0127E11.1+_PGL-14_AGS-2_PPS_2 (78878 78886,78917 79108) (frame '2'; 198 bp, 66 residues) 1 TCFCLGFCLI ELCFPELGEF VVFLLCWGLL NSAHKSHIGA LFGPDFQLFV VFYLLGFAQF 61 SSQFPY- AGS-3 (79710 80541) SCR (e 0.994) Exon 1 79710 80541 ( 832 n); score: 0.994 PGS (79710 80514) SGN-E541080- PGS (79801 80541) SGN-E545941- PGS (79822 80288) SGN-E281884+ PGS (80022 80514) SGN-E293361- PGS (80108 80479) SGN-E226551- PGS (80122 80536) SGN-E545948- 3-phase translation of AGS-3 (+strand): . . . . . . 79710 TACTGCTGTGGGTCCCACAGCTGGGTTTTGGGCTGTTCCAGCTAGGCCTGATTTTGGTCA Y C C G S H S W V L G C S S - A - F W S T A V G P T A G F W A V P A R P D F G Q L L W V P Q L G F G L F Q L G L I L V . . . . . . 79770 AATTTGGAGCTTTGCGGCGGCACCGCCACCTGAAATGATGGTGCCAACCTCCGCGGCTGC N L E L C G G T A T - N D G A N L R G C I W S F A A A P P P E M M V P T S A A A K F G A L R R H R H L K - W C Q P P R L . . . . . . 79830 AGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGAT S S C S R G S V K F A E F - I L S A A D A A A A A A A L S S Q S S R F F Q Q Q M Q Q L Q P R Q R - V R R V L D S F S S R . . . . . . 79890 GGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAA G - G F S C - S W E L L T N D S R A S Q G E A S A A R V G N Y L P M T Q G H L N W V R L Q L L E L G I T Y Q - L K G I S . . . . . . 79950 TTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGG F A S F S I R S S T A L F R E K R R R R L L A S L S G P P Q P S S G R R D D D G I C - L L Y Q V L H S P L P G E E T T T . . . . . . 80010 ACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGT T L K I - L L L L L L L S L L L L I Y R R - R Y D Y C Y C Y C Y R Y C C - Y I V D V E D M I I V I V I V I V I V V N I S . . . . . . 80070 ATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGT I N V F - C S C L C - M R N L L L G S S - M C F N V L V C V R - E I C C - V L V Y K C V L M F L F V L D E K F V A R F - . . . . . . 80130 GAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTG E - E M N - G L V Q F H E L L L G L G L S E K - T R G L F N F M N Y C - D - V C - V R N E L G A C S I S - I I A R I R F . . . . . . 80190 TTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTG F A I S H L S R V Y V H R V L V L - A V L L Y L I C Q E F T F T E F W C C K L W V C Y I S F V K S L R S P S F G V V S C . . . . . . 80250 GGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGT G R - H E T Q A S G E V V A C D D E F G D D N T K H K H Q G K L L L V M M N L V G T I T R N T S I R G S C C L - - - I W . . . . . . 80310 GGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAG G V C S V V C R P H N K L L - S H C N K G F V L L F A D L T I S C F D H I V T R W G L F C C L Q T S Q - A A L I T L - Q . . . . . . 80370 ATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAA I - - G I S V D Y E N L - F H M N V L - Y N R G S V W T M K T C S S T - M F C K D I I G D Q C G L - K P V V P H E C F V . . . . . . 80430 GGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTG G N H G G F R - I Q F C N L L K L Y Q L E T M A V S V E F N S V I C - N Y I S C R K P W R F P L N S I L - F V E T I S V . . . . . . 80490 TGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT - A - T F L L K R L L W T S I Y Y E L K L S Y S K D C Y G L Q F I T V S L N F P T Q K I A M D F N L L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-14_AGS-3_PPS_1 (79711 80016) (frame '2'; 303 bp, 101 residues) 1 TAVGPTAGFW AVPARPDFGQ IWSFAAAPPP EMMVPTSAAA AAAAAAALSS QSSRFFQQQM 61 GEASAARVGN YLPMTQGHLN LLASLSGPPQ PSSGRRDDDG R- >C04HBa0127E11.1+_PGL-14_AGS-3_PPS_2 (80185 80418) (frame '2'; 231 bp, 77 residues) 1 VCLLYLICQE FTFTEFWCCK LWDDNTKHKH QGKLLLVMMN LVGFVLLFAD LTISCFDHIV 61 TRYNRGSVWT MKTCSST- 3-phase translation of AGS-3 (-strand): . . . . . . 80541 AGTAATAAATTGAAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGAT S N K L K S I A I F - V G K F K L T T D V I N - S P - Q S F E - E S L S S Q L I - - I E V H S N L L S R K V - A H N - . . . . . . 80481 ATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAA I V S T N Y R I E F N G N R H G F L T K - F Q Q I T E L N S T E T A M V S L Q N Y S F N K L Q N - I Q R K P P W F P Y K . . . . . . 80421 CATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTAC H S C G T T G F H S P H - S P I I S C Y I H V E L Q V F I V H T D P L L Y L V T T F M W N Y R F S - S T L I P Y Y I L L . . . . . . 80361 AATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATT N V I K A A Y C E V C K Q Q N K P H Q I M - S K Q L I V R S A N N R T N P T K F Q C D Q S S L L - G L Q T T E Q T P P N . . . . . . 80301 CATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTT H H H K Q Q L P L M L V F R V I V P Q L I I T S N N F P - C L C F V L S S H S L S S S Q A T T S P D A C V S C Y R P T A . . . . . . 80241 ACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTA T T P K L G E R K L L T N E I - Q T N L Q H Q N S V N V N S - Q M R Y S K Q T - Y N T K T R - T - T L D K - D I A N K P . . . . . . 80181 ATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAAC I L A I I H E I E Q A P S S F L T H - N S - Q - F M K L N K P L V H F S L T R T N P S N N S - N - T S P - F I S H S L E . . . . . . 80121 CTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATA L A T N F S S N T N K N I K T H L Y D I - Q Q I S H L T Q T R T L K H I Y T I Y P S N K F L I - H K Q E H - N T F I R Y . . . . . . 80061 TTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTC L T T I T I T I T I T I I I S S T S V V - Q Q - R - Q - Q - Q - S Y L Q R P S S I N N N N D N N N N N N N H I F N V R R . . . . . . 80001 GTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATG V S S P G R G L W R T - - R S - Q I E M S L L P E E G C G G P D R E A S K L R C R L F S R K R A V E D L I E K L A N - D . . . . . . 79941 CCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTG P L S H W - V I P N S S S - S L T H L L P - V I G K - F P T L A A E A S P I C C A L E S L V S N S Q L - Q L K P H P S A . . . . . . 79881 CTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGC L K E S R T L R T - R C R G C S C C S R - K N L E L C E L N A A A A A A A A A A A E R I - N S A N L T L P R L Q L L Q P . . . . . . 79821 GGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCAAAGCTCCAAATTTGACCAAA G G W H H H F R W R C R R K A P N L T K E V G T I I S G G G A A A K L Q I - P K R R L A P S F Q V A V P P Q S S K F D Q . . . . . . 79761 ATCAGGCCTAGCTGGAACAGCCCAAAACCCAGCTGTGGGACCCACAGCAGTA I R P S W N S P K P S C G T H S S S G L A G T A Q N P A V G P T A V N Q A - L E Q P K T Q L W D P Q Q Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 80857 86697 AGS-1 (80857 80877,83047 83351,83810 83934) SCR (e 0.762 d 0.000 a 0.268,e 0.839 d 0.000 a 0.000,e 0.880) Exon 1 80857 80877 ( 21 n); score: 0.762 Intron 1 80878 83046 (2169 n); Pd: 0.000 Pa: 0.268 Exon 2 83047 83351 ( 305 n); score: 0.839 Intron 2 83352 83809 ( 458 n); Pd: 0.000 Pa: 0.000 Exon 3 83810 83934 ( 125 n); score: 0.880 PGS (80857 80877,83047 83351,83810 83859) SGN-E253695+ PGS (80857 80877,83047 83343) SGN-E249253+ PGS (83047 83319) SGN-E242674- PGS (83047 83319) SGN-E233074- PGS (83047 83319) SGN-E233735- PGS (83047 83319) SGN-E377238- PGS (83047 83318) SGN-E237992- PGS (83049 83319) SGN-E240879- PGS (83059 83191) SGN-E376754- PGS (83064 83262) SGN-E544203- PGS (83066 83319) SGN-E233594- PGS (83217 83351,83810 83934) SGN-E578392- 3-phase translation of AGS-1 (+strand): . . . : . . . 80857 AATGGAACAGCTCAAAGTTTC : GCAATAGACAAGTGTTAAGAGCCTGTTTGGCTCAGCTTA N G T A Q S F : A I D K C - E P V W L S L M E Q L K V S : Q - T S V K S L F G S A - W N S S K F : R N R Q V L R A C L A Q L . . . . . . 83086 AAAACTGGTCAAACTGACTTAAAAACTGGTTTTTGACTTATTTAGCTGTTTGGCAATACT K T G Q T D L K T G F - L I - L F G N T K L V K L T - K L V F D L F S C L A I L K N W S N - L K N W F L T Y L A V W Q Y . . . . . . 83146 CAAAATAACTTATTTTAAGTTTAAAAAAACTTATTTTAGGTCAAAAGTTAAAAGCTGGGT Q N N L F - V - K N L F - V K S - K L G K I T Y F K F K K T Y F R S K V K S W V S K - L I L S L K K L I L G Q K L K A G . . . . . . 83206 AGAGATGCTTTTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGATCACATTTTTACGTT R D A F F F F S L - A V L S - S H F Y V E M L F F F L A Y K L F - V D H I F T F - R C F F F F - L I S C F K L I T F L R . . . . . . 83266 TTTGGCCTTAATATTTTTATACAATCTCCAAATTACCTACATAACTCTAATATCTCTTTC F G L N I F I Q S P N Y L H N S N I S F L A L I F L Y N L Q I T Y I T L I S L S F W P - Y F Y T I S K L P T - L - Y L F . . . : . . . 83326 TTTCATTTTTCCTTTTTCACGTGTGG : TTTTTTAACTTCAGCACTTTTATCCAAACGCATA F H F S F F T C G : F L T S A L L S K R I F I F P F S R V : V F - L Q H F Y P N A - L S F F L F H V W : F F N F S T F I Q T H . . . . . . 83844 ACTGCTTATTTTAAAAATAAGTTTCAGCAATTTCAAAAGTATTTTTTTAAAGCTGTTTTT T A Y F K N K F Q Q F Q K Y F F K A V F L L I L K I S F S N F K S I F L K L F L N C L F - K - V S A I S K V F F - S C F . . . . 83904 ATCAAGCCCATCCAAACGGGCACTTATTATG I K P I Q T G T Y Y S S P S K R A L I M Y Q A H P N G H L L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-15_AGS-1_PPS_1 (83251 83351,83810 83933) (frame '1'; 225 bp, 75 residues) 1 SHFYVFGLNI FIQSPNYLHN SNISFFHFSF FTCGFLTSAL LSKRITAYFK NKFQQFQKYF 61 FKAVFIKPIQ TGTYY AGS-2 (81242 81267,83064 83358,83815 83856) SCR (e 0.769 d 0.000 a 0.000,e 0.850 d 0.000 a 0.000,e 0.786) Exon 1 81242 81267 ( 26 n); score: 0.769 Intron 1 81268 83063 (1796 n); Pd: 0.000 Pa: 0.000 Exon 2 83064 83358 ( 295 n); score: 0.850 Intron 2 83359 83814 ( 456 n); Pd: 0.000 Pa: 0.000 Exon 3 83815 83856 ( 42 n); score: 0.786 PGS (81242 81267,83064 83166) SGN-E577960+ PGS (83142 83358,83815 83856) SGN-E204223- PGS (83168 83358,83815 83856) SGN-E374844- 3-phase translation of AGS-2 (+strand): . . . : . . . 81242 CGAGAAAACCAATTTTGAGACATCTG : AGAGCCTGTTTGGCTCAGCTTAAAAACTGGTCAA R E N Q F - D I - : E P V W L S L K T G Q E K T N F E T S : E S L F G S A - K L V K R K P I L R H L : R A C L A Q L K N W S . . . . . . 83098 ACTGACTTAAAAACTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAATAACTTA T D L K T G F - L I - L F G N T Q N N L L T - K L V F D L F S C L A I L K I T Y N - L K N W F L T Y L A V W Q Y S K - L . . . . . . 83158 TTTTAAGTTTAAAAAAACTTATTTTAGGTCAAAAGTTAAAAGCTGGGTAGAGATGCTTTT F - V - K N L F - V K S - K L G R D A F F K F K K T Y F R S K V K S W V E M L F I L S L K K L I L G Q K L K A G - R C F . . . . . . 83218 TTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGATCACATTTTTACGTTTTTGGCCTTAAT F F F S L - A V L S - S H F Y V F G L N F F L A Y K L F - V D H I F T F L A L I F F F - L I S C F K L I T F L R F W P - . . . . . . 83278 ATTTTTATACAATCTCCAAATTACCTACATAACTCTAATATCTCTTTCTTTCATTTTTCC I F I Q S P N Y L H N S N I S F F H F S F L Y N L Q I T Y I T L I S L S F I F P Y F Y T I S K L P T - L - Y L F L S F F . . . : . . . 83338 TTTTTCACGTGTGGATGATAG : TAACTTCAGCACTTTTATCCAAACGCATAACTGCTTATT F F T C G - - : - L Q H F Y P N A - L L I F S R V D D S : N F S T F I Q T H N C L F L F H V W M I : V T S A L L S K R I T A Y . 83854 TTA L F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (83629 83739) SCR (e 0.820) Exon 1 83629 83739 ( 111 n); score: 0.820 PGS (83629 83739) SGN-E353601+ 3-phase translation of AGS-3 (+strand): . . . . . . 83629 TCTTATAAATAATTTGTGATGAGAAAGAAATATGTGAATGATAGCAAAATATAATTATTT S Y K - F V M R K K Y V N D S K I - L F L I N N L - - E R N M - M I A K Y N Y L L - I I C D E K E I C E - - Q N I I I . . . . . . 83689 ATGGCTGTAAAATATAAATTAATTAACTTTTATTATGTTAACAACTTTTAA M A V K Y K L I N F Y Y V N N F - W L - N I N - L T F I M L T T F Y G C K I - I N - L L L C - Q L L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 83739 TTAAAAGTTGTTAACATAATAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTA L K V V N I I K V N - F I F Y S H K - L - K L L T - - K L I N L Y F T A I N N Y K S C - H N K S - L I Y I L Q P - I I . . . . . . 83679 TATTTTGCTATCATTCACATATTTCTTTCTCATCACAAATTATTTATAAGA Y F A I I H I F L S H H K L F I R I L L S F T Y F F L I T N Y L - I F C Y H S H I S F S S Q I I Y K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (84224 84439,85008 85110,85854 85925,86273 86478,86592 86697) SCR (e 0.991 d 0.989 a 0.898,e 1.000 d 0.983 a 0.971,e 1.000 d 0.996 a 0.975,e 0.995 d 0.977 a 1.000,e 0.972) Exon 1 84224 84439 ( 216 n); score: 0.991 Intron 1 84440 85007 ( 568 n); Pd: 0.989 Pa: 0.898 Exon 2 85008 85110 ( 103 n); score: 1.000 Intron 2 85111 85853 ( 743 n); Pd: 0.983 Pa: 0.971 Exon 3 85854 85925 ( 72 n); score: 1.000 Intron 3 85926 86272 ( 347 n); Pd: 0.996 Pa: 0.975 Exon 4 86273 86478 ( 206 n); score: 0.995 Intron 4 86479 86591 ( 113 n); Pd: 0.977 Pa: 1.000 Exon 5 86592 86697 ( 106 n); score: 0.972 PGS (84224 84439,85008 85110,85854 85925,86273 86478,86592 86697) SGN-E344770+ 3-phase translation of AGS-4 (+strand): . . . . . . 84224 TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAAT - D F R T - K N N N F Q K L I P N S K N K I L E R R K T T I F K S - S Q I P K I R F - N V E K Q Q F S K A N P K F Q K . . . . . . 84284 TTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCC F P I G D F F F R S E T E N K N G S E S F R S E I F F S D Q K Q K I K M A V N P F S D R R F F F P I R N R K - K W Q - I . . . . . . 84344 TCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAG S I I S - W N A N S F P Q - I V R P I - Q L F P N G M P I P F L N E L F V L S R L N Y F L M E C Q F L S S M N C S S Y L . . . . : . . 84404 ACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAGG T W C - V - G - Q N P W : C R K N K N K R H G V E F E V D K I P G : V G K T R T R G D M V L S L R L T K S L : V - E K Q E Q E . . . . . . 85032 TACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCAT Y N L L V E Y S D G L C C K D A C G F H T I Y L S N I R M V F V A K M P V D F I V Q S T C R I F G W S L L Q R C L W I S . . : . . . . 85092 TGCTTTTGATATGCCTTTG : CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCA C F - Y A F : A F C F - - N I Y A T S I P A F D M P L : L F V S D E I F T Q P V F H L L L I C L C : F L F L M K Y L R N Q Y S . . . . : . . 85895 CTGCAACAACATCTCTGGATTTGTAGATCCG : GTTGTTCCAGATAATGAAAACAGTGCCTT L Q Q H L W I C R S : G C S R - - K Q C L C N N I S G F V D P : V V P D N E N S A L T A T T S L D L - I R : L F Q I M K T V P . . . . . . 86302 GTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCC V L H T Y I Q D F V Q G W W L W D F R A Y S T H T F K I L F K D G G C G T F V P C T P H I H S R F C S R M V V V G L S C . . . . . . 86362 ATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCC I I F Q L N R L C E T S S A T V W G T A L F F N L I A S V R R A Q Q Q S G V Q P H Y F S T - S P L - D E L S N S L G Y S . . . . . . : 86422 ACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC : TTA T G R P S P S C T N S S - - D D - T C : L R A D P L Q A A Q T P V D E M I R H A : Y H G Q T L S K L H K L Q L M R - L D M : L . . . . . . 86595 TGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACT C R S Q - S N E N L L A A A Y S R V A T V D P N D P T K I F L Q Q P T P E S Q L M S I P M I Q R K S S C S S L L Q S R N . . . . . 86655 TAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA - A S F I P I T T C L K L N R R R S Y Q S Q P A - N S I L G V V H T N H N L L K T Q Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-15_AGS-4_PPS_1 (84267 84439,85008 85110,85854 85925,86273 86478,86592 86688) (frame '2'; 648 bp, 216 residues) 1 SQIPKIFRSE IFFSDQKQKI KMAVNPQLFP NGMPIPFLNE LFVLSRHGVE FEVDKIPGVG 61 KTRTRGTIYL SNIRMVFVAK MPVDFIAFDM PLLFVSDEIF TQPVFHCNNI SGFVDPVVPD 121 NENSALYSTH TFKILFKDGG CGTFVPLFFN LIASVRRAQQ QSGVQPRADP LQAAQTPVDE 181 MIRHAYVDPN DPTKIFLQQP TPESQLRRRS YQSQPA- AGS-5 (84991 85544) SCR (e 0.970) Exon 1 84991 85544 ( 554 n); score: 0.970 PGS (84991 85544) SGN-E333932+ 3-phase translation of AGS-5 (+strand): . . . . . . 84991 AGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAAT R L F V I S V G K T R T R G T I Y L S N D C L L S V - E K Q E Q E V Q S T C R I T V C Y Q C R K N K N K R Y N L L V E . . . . . . 85051 ATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG I R M V F V A K M P V D F I A F D M P L F G W S L L Q R C L W I S L L L I C L W Y S D G L C C K D A C G F H C F - Y A F . . . . . . 85111 GTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAAC V C Y T S M S F Y R P P I L Q T P H A N Y V I L L C L F T V L R F C K H H M L T G M L Y F Y V F L P S S D F A N T T C - . . . . . . 85171 CAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAA Q L Y S L M T G I V F L W I R E E N R E N S I H S - L V - F F C G S E K K I A K P T L F T H D W Y S F S V D Q R R K S R . . . . . . 85231 AACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTAT N S L L L L L L L Y - Q V T M A L L Q Y T L F C Y S Y Y Y I N K L L W R S F S I K L S F V T L T I I L T S Y Y G A P S V . . . . . . 85291 CTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATA L L - L D Q H M H N V Q F R M A I P S I C C N - T N I C I M C N S E W R F Q V - S A V T R P T Y A - C A I Q N G D S K Y . . . . . . 85351 ACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGA T I S D I S F V A S F - G - T K L C V - R L A I F L L L L L F E A E Q N F V Y D N D - R Y F F C C F F L R L N K T L C M . . . . . . 85411 TATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATT Y A S E S C S F V L S L K Y I L E S R I M L L N P V V L F S L - N T F - K V V F I C F - I L - F C S L F E I H F R K S Y . . . . . . 85471 TTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATAC L L C A I Q N G A - - S R Y I T L V K Y Y Y V Q F R M A R S R A D I S L W S N T F T M C N S E W R V V E Q I Y H F G Q I . . 85531 GATCCTTCTCCTAT D P S P I L L L R S F S Y Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-15_AGS-5_PPS_1 (84991 85263) (frame '1'; 270 bp, 90 residues) 1 RLFVISVGKT RTRGTIYLSN IRMVFVAKMP VDFIAFDMPL VCYTSMSFYR PPILQTPHAN 61 QLYSLMTGIV FLWIREENRE NSLLLLLLLY - 3-phase translation of AGS-5 (-strand): . . . . . . 85544 ATAGGAGAAGGATCGTATTTGACCAAAGTGATATATCTGCTCTACTACGCGCCATTCTGA I G E G S Y L T K V I Y L L Y Y A P F - - E K D R I - P K - Y I C S T T R H S E R R R I V F D Q S D I S A L L R A I L . . . . . . 85484 ATTGCACATAGTAAAATACGACTTTCTAAAATGTATTTCAAAGAGAGAACAAAACTACAG I A H S K I R L S K M Y F K E R T K L Q L H I V K Y D F L K C I S K R E Q N Y R N C T - - N T T F - N V F Q R E N K T T . . . . . . 85424 GATTCAGAAGCATATCATACACAAAGTTTTGTTCAGCCTCAAAAAGAAGCAACAAAAGAA D S E A Y H T Q S F V Q P Q K E A T K E I Q K H I I H K V L F S L K K K Q Q K K G F R S I S Y T K F C S A S K R S N K R . . . . . . 85364 ATATCGCTAATCGTTATACTTGGAATCGCCATTCTGAATTGCACATTATGCATATGTTGG I S L I V I L G I A I L N C T L C I C W Y R - S L Y L E S P F - I A H Y A Y V G N I A N R Y T W N R H S E L H I M H M L . . . . . . 85304 TCTAGTTACAGCAGATACTGAAGGAGCGCCATAGTAACTTGTTAATATAATAGTAAGAGT S S Y S R Y - R S A I V T C - Y N S K S L V T A D T E G A P - - L V N I I V R V V - L Q Q I L K E R H S N L L I - - - E . . . . . . 85244 AACAAAAGAGAGTTTTCGCGATTTTCTTCTCTGATCCACAGAAAAACTATACCAGTCATG N K R E F S R F S S L I H R K T I P V M T K E S F R D F L L - S T E K L Y Q S - - Q K R V F A I F F S D P Q K N Y T S H . . . . . . 85184 AGTGAATAGAGTTGGTTAGCATGTGGTGTTTGCAAAATCGGAGGACGGTAAAAAGACATA S E - S W L A C G V C K I G G R - K D I V N R V G - H V V F A K S E D G K K T - E - I E L V S M W C L Q N R R T V K R H . . . . . . 85124 GAAGTATAACATACCAAAGGCATATCAAAAGCAATGAAATCCACAGGCATCTTTGCAACA E V - H T K G I S K A M K S T G I F A T K Y N I P K A Y Q K Q - N P Q A S L Q Q R S I T Y Q R H I K S N E I H R H L C N . . . . . . 85064 AAGACCATCCGAATATTCGACAAGTAGATTGTACCTCTTGTTCTTGTTTTTCCTACACTG K T I R I F D K - I V P L V L V F P T L R P S E Y S T S R L Y L L F L F F L H - K D H P N I R Q V D C T S C S C F S Y T . . 85004 ATAACAAACAGTCT I T N S - Q T V D N K Q S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-15_AGS-5_PPS_1 (85484 85284) (frame '1'; 198 bp, 66 residues) 1 IAHSKIRLSK MYFKERTKLQ DSEAYHTQSF VQPQKEATKE ISLIVILGIA ILNCTLCICW 61 SSYSRY- PGL 16 (- strand): 90841 87047 AGS-1 (90841 90574,89207 89034,88261 87047) SCR (e 1.000 d 1.000 a 0.998,e 1.000 d 0.994 a 0.998,e 0.998) Exon 1 90841 90574 ( 268 n); score: 1.000 Intron 1 90573 89208 (1366 n); Pd: 1.000 Pa: 0.998 Exon 2 89207 89034 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 Pa: 0.998 Exon 3 88261 87047 (1215 n); score: 0.998 PGS (87557 87047) SGN-E339460+ PGS (87462 87076) SGN-E229048- PGS (87366 87081) SGN-E228760- PGS (87896 87110) SGN-E554638- PGS (87668 87122) SGN-E548191- PGS (87801 87251) SGN-E268562+ PGS (88002 87581) SGN-E291007+ PGS (89086 89034,88261 87655) SGN-E314876+ PGS (88219 87679) SGN-E265387+ PGS (90626 90574,89207 89034,88261 87823) SGN-E320345+ PGS (89152 89034,88261 87841) SGN-E267726+ PGS (89207 89034,88261 88033) SGN-E318948+ PGS (90775 90574,89207 89034,88261 88061) SGN-E267421+ PGS (90798 90574,89207 89034,88261 88071) SGN-E200164+ PGS (90816 90574,89207 89034,88261 88072) SGN-E343611+ PGS (90663 90574,89207 89034,88261 88083) SGN-E295005+ PGS (90841 90574,89207 89034,88261 88184) SGN-E317523+ PGS (90800 90574,89207 89034,88261 88188) SGN-E325340+ PGS (90818 90574,89207 89034,88261 88195) SGN-E322880+ PGS (90794 90574,89207 89034,88261 88198) SGN-E317415+ PGS (90820 90574,89207 89034,88261 88234) SGN-E289808+ PGS (90792 90574,89207 89034,88261 88234) SGN-E324578+ PGS (90789 90618) SGN-E283308+ 3-phase translation of AGS-1 (-strand): . . . . . . 90841 AAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAAC K T H C S T N S R I L R E R R G R V G N K P I A A L I Q E Y S E R E E E E L V T N P L Q H - F K N T Q R E K R K S W - . . . . . . 90781 AATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAAC N G C C K W C R T F M A I K I D Q K S N M A A V N G V G L S W P S K L T K N Q T Q W L L - M V - D F H G H Q N - P K I K . . . . . . 90721 ACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTC T Q M G F F S I S P S M Q P I F F F F F P K W G F S P S H R R C N P S S S S S S H P N G V F L H L T V D A T H L L L L L . . . . . . 90661 TGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAA C N H - N D S L S - - K E E N V H T - E A T I R M T A S V D E K K K T F T L E K L Q P L E - Q P Q L M K R R K R S H L R . . . : . . . 90601 GTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGT V - R S F Q Q S Q : G V D A R R C K F P C S E E A F S K A K : E L M P G G V N S P V S L K K L S A K P R : S - C Q E V - I P L . . . . . . 89175 CCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCG P C F Q V S W R T T Y H Y - L R E G L S R A F K S V G G Q P I I I D S V K G S R S V L S S Q L A D N L S L L T P - R A L . . . . . . 89115 TATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTAT Y A G H R W - R V H - L C R I M G T S Y M R D I D G N E Y I D Y V G S W G P A I V C G T - M V T S T L T M S D H G D Q L . . . : . . . 89055 AATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAAC N W S C G - - : G A S S I G - N N E E R N I G H A D D E : V L A A L A E T M K K G T - L V M R M M R : C - Q H W L K Q - R K E . . . . . . 88223 GAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGT E F R C S M S P - K Y T G R D G Y F S C S F G A P C L L E N T L A E M V I S A V R V S V L H V S L K I H W Q R W L F Q L . . . . . . 88163 TCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACT S K H R N G S I C Q L W Y R S M Y G S T P S I E M V R F V N S G T E A C M G V L F Q A - K W F D L S T L V Q K H V W E Y . . . . . . 88103 ACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCA T A G S C F H L P S - D H Q I R G L L P R L A R A F T C R P K I I K F E G C Y H Y G W L V L S L A V L R S S N S R V V T . . . . . . 88043 TGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCC W S C - S I S C - S R Q W R C H P R S S G H A D P F L V K A G S G V A T L G L P M V M L I H F L L K Q A V A L P P S V F . . . . . . 87983 TGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGA - L S G S S K G S Y Y R Y S D R T L Q - D S P G V P K A A T I D T L T A P Y N D L T L R E F Q R Q L L S I L - P H L T M . . . . . . 87923 CATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCT H F C C - E P L - G A Q R R N S R C N S I S A V E S L F E E H K G E I A A V I L T F L L L R A S L R S T K E K - P L - F . . . . . . 87863 CGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCAT R A C S R K C W L H P T - A R I S C C H E P V V G N A G F I P P K L E F L A A I S S L - S E M L A S S H L S - N F L L P . . . . . . 87803 TCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATT S Q D H Q R E - C T S Y F R R S H D W I R K I T K E N D A L L I F D E V M T G F F A R S P K R M M H F L F S T K S - L D . . . . . . 87743 TAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACT - I G I W R C S R V F W N N S R F D N T R L A Y G G A Q E Y F G I T P D L T T L L D W H M A V L K S I L E - L Q I - Q H . . . . . . 87683 CGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAAT R E D Y W R W L A S R C L R R K T G Y N G K I I G G G L P V G A Y G G R R D I M S G R L L A V A C Q - V L T E E D G I - . . . . . . 87623 GGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATT G D G S T C R T N V S S W H P K W K P I E M V A P A G P M Y Q A G T L S G N P L W R W - H L Q D Q C I K L A P - V E T H . . . . . . 87563 GGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACA G H D C W N S H A - A V T R T G N I R T A M T A G I H T L K R L Q G Q G T Y E H W P - L L E F T R L S G Y K D R E H T N . . . . . . 87503 CTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGG L G Q D H R G T Y T R N L G C W K E D R L D K I T A E L T Q G I L D A G K K T G T W T R S P R N L H K E S W M L E R R P . . . . . . 87443 TCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCC S C N V W W L H K G D V W L L L R G W S H A M C G G S I R G M F G F F F A D G P V M Q C V V A P - G G C L A S S S R M V . . . . . . 87383 CATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAG H L - L F G C K E E - Y R K I W Q I L - I Y N F S D A K K S D T E K F G R F Y R P S I T F R M Q R R V I Q K N L A D S I . . . . . . 87323 AGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAG R D A G G R C L L C T I T V - G W I Y - G M L E E G V Y F A P S Q F E A G F T S E G C W R K V F T L H H H S L R L D L L . . . . . . 87263 CTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAA L S T H S R G Y S K D C S C S - K S F E L A H T P E D I Q R T V A A A E K V L K A - H T L Q R I F K G L - L Q L K K F - . . . . . . 87203 GCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGT A N L T T I F L F V C - M E R F S F L S Q I - P L Y F F L Y A R W R D F P F - V S K F N H Y I S F C M L D G E I F L F K . . . . . . 87143 TTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGC F C S V E - K V I L - H I V Y S E T C C F V L L N K R - F C N I L F I Q K H A A F L F C - I K G D F V T Y C L F R N M L . . . . 87083 ATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTC I I L P P V F K A F F G L F Y L L Y L K H F L V H Y F T S C I - S I F W Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-16_AGS-1_PPS_1 (90840 90574,89207 89034,88261 87194) (frame '2'; 1506 bp, 502 residues) 1 KPIAALIQEY SEREEEELVT MAAVNGVGLS WPSKLTKNQT PKWGFSPSHR RCNPSSSSSS 61 ATIRMTASVD EKKKTFTLEK SEEAFSKAKE LMPGGVNSPV RAFKSVGGQP IIIDSVKGSR 121 MRDIDGNEYI DYVGSWGPAI IGHADDEVLA ALAETMKKGT SFGAPCLLEN TLAEMVISAV 181 PSIEMVRFVN SGTEACMGVL RLARAFTCRP KIIKFEGCYH GHADPFLVKA GSGVATLGLP 241 DSPGVPKAAT IDTLTAPYND ISAVESLFEE HKGEIAAVIL EPVVGNAGFI PPKLEFLAAI 301 RKITKENDAL LIFDEVMTGF RLAYGGAQEY FGITPDLTTL GKIIGGGLPV GAYGGRRDIM 361 EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLQGQGTYEH LDKITAELTQ GILDAGKKTG 421 HAMCGGSIRG MFGFFFADGP IYNFSDAKKS DTEKFGRFYR GMLEEGVYFA PSQFEAGFTS 481 LAHTPEDIQR TVAAAEKVLK QI- ... finished at: Mon Aug 28 20:39:57 2006