<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:18:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="31051" stop="31828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31351" g_stop="31527" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31351" e_stop="31527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTTCTCCCATACAATGCCTCGAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTATGAGAACTCTGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATGACACATGCACGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="33525" stop="34455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33825" g_stop="34155" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33825" e_stop="34155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGGCCAGACCTATATACTTTTTCAAGTATCACAGACTCACCCACCATGGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAACAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="34456" stop="35721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34756" g_stop="35419" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34756" e_stop="35419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGTAGTAACTGACATCCTACCTTGCTCTAGGCACAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGACGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTTGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTTAAGTCTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCCTGTTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGTACTTGTTCATTCTCCCCATCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="-" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="35776" stop="34623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35476" g_stop="34923" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35476" e_stop="34923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAACAGGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGACTTAAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCAACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350708" ref_strand="+" ref_description="SGN-E350708 [cTOS-7-K22]">
      <seq>ggggatttagtgcttctattcaattccagattgcgcttgtttccaggcaaactcaagtccaaatggactggtccttacacggttacccaactattccctcatggagcagttgagttggaaacgaaggagggtgtgcggttcaaggtgaatggacagcgcataaaaatctatctcggacatgctgaatcggcgaatgaagtgatcgaggcataccatcttgatgaagtctgagtaatcaagtggccccagtcgtgccgcgacattaaatcaggcgcttgttgggaggcaacccaatacttatcgtctttttaataatggtagcatttttttctataaatgggttttaaatttgcaggcacatcaccaagaaattctgcagaaaactactccgcagtagccactgacggatacaacaacggaccgtcgtatgcatccgtcacaccaggtatgtatttctgtcatttttgaaattagggcgcatacgacggaacctacgatggggcgtcgcaagtgcgatggaccgtcgtcggggaaccgttgcgcgattaatgaaatctnaccgacccacccggctggaccttttcaaatctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="-" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="57216" stop="56013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56916" g_stop="56299" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="-" ref_id="SGN-E350708" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56916" e_stop="56299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAAGGTAAATGGACAGCGCATAAAAATCTATCTAGGGCATGCTGAATCGGCGAATGAAGTGATCGAGACATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCTGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGTATTTTTTTTCTATAAATGAGTTTTAAATTTGCAGGCACATCACCCGGAAATTCTGTAGAAAAATACTCAGCAGTAGCCACTGACGGATACAACGACGGACCATTGCGAATGAAACGGATCGTCGTATGCATCCGTCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGACGGGGCGTCGCATGTGCGACGGACCGTCAACGGGGAACTGTCGCGTGATTAATGAAATTTACCCGACCCGACCCGGCTGGACCCCTTTTCAAAATTTGACC</genome_strand>
        <mrna_strand>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACGAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGACATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGCA-TTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAAGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATAC-A--AC--A--A---CG---G--AC----CGTCGTATGCATCCGTCACACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCGCATACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCGGGGAACCGTTGCGCGATTAATGAAATCTNACCGACCC-ACCCGGCTGGA--CCTTTTC-AAATCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577717" ref_strand="+" ref_description="SGN-E577717 [LE15CC06]">
      <seq>ctctatgactctagtacctagcaaataggagcaaaatatctcaaaagcaaagactactgcgaggagttcatgctcagtcactgtgtagttcttctgggcttcatttagggctttactagcatagtaaattgggtgaaggattttgtttcttctctgtcccaatactacaccaagagccaccccactagcatcgcacattacctcaaatggacttttccaatccggagaaataatgataggtgcagacactaacttctcttttagctcactgaatgctttaagacaggactcatcaaaacaaaatttacattctttcttcagtaatttgcacaatgggtgtgcaatctttgaaaagtctttgatgaatctccgataaaaacctgcatgcccaagaaagcttctcacacctttcatagagatcggtgggggaagtctctctattacctcaactttagctcgatcaacctctattcccttttctgaaatgcgatgacccaacacaatacctttttttaccatgaaatgacacttttcccagtttagtaccagattgcagtcttcacatctcttaagaacctcagattaattggtcaagcatcgctcaattgaatcaccaaccacagaaaaatcatccataaaaacctctatagtatcctccaccatgtcagaaaatattgacatcatatatctctgaaaggttgcgggtgcattgcacaacctaaatggcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="57922" stop="59255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58222" g_stop="58955" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E577717" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58222" e_stop="58955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATAATTCTAGTACCTAGCAAATAGGAGCGAAAATTCTCAAAAGCAAAGACTACTGTGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGTTTTACTAGCATAGTAAATTGGGTGGAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTGTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACCGAATGCTTTAAGACAGGATTCATCAAAACAAAATTTACATTCTTTCTCCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTAAACTTTAGCTCGATCAACCTCTATGCCCTTTTCTGAAATGCGATGACCCGACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATAAATTGGTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCATCCATAAAAATCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTCTTC</genome_strand>
        <mrna_strand>CTCTATGACTCTAGTACCTAGCAAATAGGAGCAAAATATCTCAAAAGCAAAGACTACTGCGAGGAGTTCATGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTTTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACAGGACTCATCAAAACAAAATTTACATTCTTTCTTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCATAGAGATCGGTGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATTCCCTTTTCTGAAATGCGATGACCCAACACAATACCTTTTTTTACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATTAATTGGTCAAGCATCGCTCAATTGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATATATCTCTGAAAGGTTGCGGGTGCATTGCACAACCTAAATGGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350677" ref_strand="+" ref_description="SGN-E350677 [cTOS-7-C2]">
      <seq>tcagttgcttgcccttggttctgatatgcagtcaaacagcaaagatctgcttcacttggagactgaaggcttgtccttggaatcaaaacttctcttttgcactagtgatggcggatctcaatctctaaatttgaaacctgacgaccttcctgataacaagcctaacaagcctgaaatctcttctgtaccgagaagccaagttctaacaaaggtcaaggattttttgggagtatttttggaaaacaatagaaaagtggagcttgaagcaaagaagaatcctgagaaatatgatatcgaagctcttaccggtgaagaatctgaatacatagagatggacttaatgttgggtgttgctgaacttcacacacaggaggctgtatcagctgctgaatctgcaatagcaagttaccaaccagtaatcgatctggataccaatgatacgacagaatctgaagacactagcgatgaggatgacattgaggataccaacaaaagtgatgatgatgatgatgatgatgatgatggaggttcttctctangaaaagaatctagcttacagaaaaggattctcccctagaagcattgaagaagaagcgacagccctgtaatcgagctaacatagttgagctctcttagcgctaaggacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="67680" stop="68929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67980" g_stop="68629" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E350677" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67980" e_stop="68629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGCTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATT</genome_strand>
        <mrna_strand>TCAGTTGCTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTANGAAAAGAATCT-AGCTTACAGAAAAGGATTCTCCCCTAGAAGCATTGAAGAAGAAGCGACAGCCCTGTAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266744" ref_strand="+" ref_description="SGN-E266744 [cLEI-7-I17]">
      <seq>cttgcccttggttctgatatgcagtcaaacagcaaagatctgcttcacttggagactgaaggcttgtccttggaatcaaaacttctcttttgcactagtgatggcggatctcaatctctaaatttgaaacctgacgaccttcctgataacaagcctaacaagcctgaaatctcttctgtaccgagaagccaagttctaacaaaggtcaaggattttttgggagtatttttggaaaacaatagaaaagtggagcttgaagcaaagaagaatcctgagaaatatgatatcgaagctcttaccggtgaagaatctgaatacatagagatggacttaatgttgggtgttgctgaacttcacacacaggaggctgtatcagctgctgaatctgcaatagcaagttaccaaccagtaatcgatctggataccaatgatacgacagaatctgaagacactagcgatgaggatgacattgaggataccaacaaaagtgatgatgatgatgatgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="67687" stop="68799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67987" g_stop="68499" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E266744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67987" e_stop="68499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGAT</genome_strand>
        <mrna_strand>CTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266994" ref_strand="+" ref_description="SGN-E266994 [cLEI-7-J2]">
      <seq>ttgcccttggttctgatatgcagtcaaacagcaaagatctgcttcacttggagactgaaggcttgtccttggaatcaaaacttctcttttgcactagtgatggcggatctcaatctctaaatttgaaacctgacgaccttcctgataacaagcctaacaagcctgaaatctcttctgtaccgagaagccaagttctaacaaaggtcaaggattttttgggagtatttttggaaaacaatagaaaagtggagcttgaagcaaagaagaatcctgagaaatatgatatcgaagctcttaccggtgaagaatctgaatacatagagatggacttaatgttgggtgttgctgaacttcacacacaggaggctgtatcagctgctgaatctgcaatagcaagttaccaaccagtaatcgatctggataccaatgatacgacagaatctgaagacactagcgatgaggatgacattgaggataccaacaaaagtgatgatgatgatgatgatgatgatgatggaggttcttctctaggaaaagaatctaagcttacagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="67688" stop="68842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67988" g_stop="68542" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E266994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67988" e_stop="68542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAA</genome_strand>
        <mrna_strand>TTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321054" ref_strand="+" ref_description="SGN-E321054 [cTOB-13-N16]">
      <seq>cctgataacaagcctaacaagcctgaaatctcttctgtaccgagaagccaagttctaacaaaggtcaaggattttttgggagtatttttggaaaacaatagaaaagtggagcttgaagcaaagaagaatcctgagaaatatgatatcgaagctcttaccggtgaagaatctgaatacatagagatggacttaatgttgggtgttgctgaacttcacacacaggaggctgtatcagctgctgaatctgcaatagcaagttaccaaccagtaatcgatctggataccaatgatacgacagaatctgaagacactagcgatgaggatgacattgaggataccaacaaaagtgatgatgatgatgatgatgatgatgatggaggttcttctctaggaaaagaatctaagcttacagaaaaggattctcctaagaaagcattgaagaggaagcgacagcctgtaaatcgagctaacatagttgagctctcttagcgctaaggacattaattgtagcttatttttggtgagaaattcagaacatagttataagcgtgcttctcttccatgttcctataaaacttgttttagttctactctttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="67828" stop="69032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68128" g_stop="68737" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E321054" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68128" e_stop="68737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATTAATTGTAGCTTATTTTTGGTGAGAAATTCAGAACATAGTTATAAGCGTGCTTCTCTTCCATGTTCCTATAAAACTTGTTTTAGTTCTACTCTTTATTAATCAAGTGTA</genome_strand>
        <mrna_strand>CCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATTAATTGTAGCTTATTTTTGGTGAGAAATTCAGAACATAGTTATAAGCGTGCTTCTCTTCCATGTTCCTATAAAACTTGTTTTAGTTCTACTCTTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321055" ref_strand="+" ref_description="SGN-E321055 [cTOB-13-N18]">
      <seq>taacaagcctatcaagcctgaaatctcttctgtacccanagggcaagttgtaacaaaggtcaaggattttttgcgactatttttcgaaaacaataaaaaagtggagcttgaagcaaacaagaatcctgataaatatgatatcgaagctcttaccggtgaagaatctgaatacatacagatggacttaatgttgggtgttgctgaacttcacacacaggaggctgtatcacctgctgaatctgcaatagcaagttaccaaccagtaatcgatctggataccaatgatacgacagaatctgaagacactaccgatgaggatgacattgatgataccaacaaaagtgatgatgatgatgatgatgatgatgatggaggttcttctctaggaaaagaatctaagcttacagaaaaggattctcctaagaaagcattgaagaggaagcgacagcctgtaaatcgagctaacatagttgatctctcttagcgctaaagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="67833" stop="68927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68133" g_stop="68627" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E321055" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68133" e_stop="68627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACA</genome_strand>
        <mrna_strand>TAACAAGCCTATCAAGCCTGAAATCTCTTCTGTACCCANAGGGCAAGTTGTAACAAAGGTCAAGGATTTTTTGCGACTATTTTTCGAAAACAATAAAAAAGTGGAGCTTGAAGCAAACAAGAATCCTGATAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATACAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCACCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTACCGATGAGGATGACATTGATGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGATCTCTCTTAGCGCTAAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546563" ref_strand="+" ref_description="SGN-E546563 [TUS-69-P22](-)">
      <seq>aactcaaatgttactttaactgtaaatgttatttgtagttttgatgatttgacaaacaatgggacctcataaaggtatcaggttctctaattgtgtattgcaggtgtcttgtttgaggtattgcagaagaaacaaaaccagggacctagtagaggtaccaggctctcatgaaaatgagtcagtcgactgccagctggagatggtacagaaagtaggtgcacacttcccgatggcgtcagaaaagtgtgaccttttcagcaaatggcaaaggagtttaggaaagtgacttgcccacataaaaggcactttccaaaacatttgttttttagtttttgcaacttgataaaaacttttcaagaacacttgcaaaggctacacaaaaggtagaatcattccaagaacaacagcaacatcttgagcttgtcgtatagttgtttaggaatttattctcttgttgttaaattgtaaaccactgctaaatctataaaggaattggtgtgttgtgtaaaagtctaggttgtccaagtgggatagcttagtgggtagattgtttttctacttaggcttgttgagcaatagaggactattgtttaacggtaagattgataactctttcttacgtttggtgaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="88604" stop="98617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97311" g_stop="97332" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.591"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97333" i_stop="97702" i_length="370">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97703" g_stop="98313" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="627" r_length="606" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="648"/>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E546563" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97311" e_stop="97332"/>
          <exon e_start="97703" e_stop="98313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCCCCCTCTTCCTAAACTGTGATCTATCCTTCCCTGTGTCTCTTTTGTTGTGTGGCTAATCATCGTGTTAATGGATTTTTAGTTTGTTTTTAATGTATTTATGTTATAATGGCATGTTGGTTACTTTATTCCTTTGCTGTTCTTCCTATGTTCTTTTGTGAATGCTTTTCCTCTACTGTTTTGGTTGCTGATTCGCTATGATCTTGTTCAGTATTTATGTTGACTCAATGGTTTACTGCATATCTTTTTTATGATGCCAAAAGGGGGAAGTAAACTGTAAGTATCTAAATAAGGGGGAACATACTTTAAGGGGGAATATACAGTAAGGGGGAATACACAGTCTAGGGGAACGATTTTGGTATCATTGTTTGTCATCATCAAAAAGGGGGAAAATGTTATTTGTAGTTTTGATGATTTGACAAACTTAGGGACCTCATAAAGGTACCGGGTTTTCTACTTGAGTATTGCAGGTGTATTGTTCGAAGTATTGGAGATGAAACAAAACTCAGGGACCTAATAGAGGTACCAGACTCTCATGATGATGAGCCAGTCAACTGCCAGCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAG-AAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTT-TTCTTCAGTTGTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCAAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGATCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT</genome_strand>
        <mrna_strand>AACTCAAATGT-TACTTTAACT..................................................................................................................................................................................................................................................................................................................................................................................GTAAATGTTATTTGTAGTTTTGATGATTTGACAAACAATGGGACCTCATAAAGGTATCAGGTTCTCTAATTGTGTATTGCAGGTGTCTTGTTTGAGGTATTGCAGAAGAAACAAAAC-CAGGGACCTAGTAGAGGTACCAGGCTCTCATGAAAATGAGTCAGTCGACTGCCAGCTGGAGATGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTTCAGCAAATGGCAAAGGAGTTTAGGAAAGTGACTTGCCCACATAAAAGGCACTTTCCAAAACATTTGTTTTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACACTTGCAAAGGC---TACACA--AAAGGTAGAATCATTCCAAGAACAACAGCAACATCTTGAGCTTGTCGTATAGTTGTTTAGGAATTTATTCTCTTGTTGTTAAATTGTAAACCACTGCTAAATCTATAAAGGAATTGGTGTGTTGTG-TAAAAGTCTAGGTTGTCCAAGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGTTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203362" ref_strand="-" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>ttttttttttttttttttttcaatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="-" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="105614" stop="88781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99281" g_stop="99268" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99267" i_stop="98366" i_length="902">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98365" g_stop="97875" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="501" r_length="487" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="-" ref_id="SGN-E203362" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99281" e_stop="99268"/>
          <exon e_start="98365" e_stop="97875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCATTTTTTTAATTTCCTTTTAATAAATACATGTAGCTCTTCTTTATTATCTAAATAACGATAAAATTGAAAGAACATTACTAACGTGTCTTGAGCCTACACCCTAGACGTGGACGAGACTCAATGACCATTATTGGTCTTGAGCGAACCCTTGACCTGGTTTACTTCAATCAGCGGAAGACAAATAAACAGTCTCATGATATAACTTAAAGAAATAATAAGATGGCCAAATTGGAACTTAAGTCTCATAAAAAAGTATTTGAAATACAAAAATAAGAGACTCAAACTGACTATCTGATTGTCTACGACGTCTCTACAATACTAATATGGATGTTGGGACAGACCCCACAACATCCTATAAATGAAATACTAGAAAGCGAATAAAAGTGTCTTGCAGAATGCAAGAAGGCTCATCACTGACTACGAATGCTCAACTGGATCAACGAGTCGCCGTATGATTACCTGCGTCTGCATCATGAGAAGATGCAAGTCAACTGGCATCAGTACATTGTATGTACGAGTATGACAATTGAAATGCTAAACAACAATGTAAAGCTTGAAAAGAATAAGATGAAATTACCTTGACTTATCTCAACTCATGAATACTCAACTCAATGTATATATATAAGACAATTGAAACGCATATGATATTTATAAAGCTTTGTAAAACAGTAAAACAACTTAGTTAGTTAAAGAAAATGCAATAAAAAACTCAACTTTATTTATATATGAAAGTAATATAGTTCTGTGGGAGATTCTGATAGAATGTATGCCTTCACTTAACGAGTAATGGACCAGGTCCCTTACTTTACTTCAGAGAATTACCAGAAAGTTAAATGCAGTAAAATCAACACAATGATTTTACGTGGAAACCTCCTTGCTTAAGGGAGTAAAATCACGACCTGTCTCACAGGATTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGAGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGATCTCTATTGCTCAACAAGCCAAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTGAACACAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTGCTTTGTATTTGCCTTTGCAAGAGTTCTTGAAAAGTGTTTATCAAGTTGCAACAACTGAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGTCACACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAG-AAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTA-GAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGT--CACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242274" ref_strand="+" ref_description="SGN-E242274 [cLEE-3-A13]">
      <seq>tgagtcgacggatcccacgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="109905" stop="110894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110203" g_stop="110593" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-E242274" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110203" e_stop="110593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTCGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAGTGGCAGGACGAGCCGTCACAGGCGTGACGGGCCGTCACAGACCCTTGGTGAAAATTGAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACAGACCGTCGCAGGCACGACGGGCTGTCACAGGCTGCGTAAACCCTGACTGGGTCGGATTTCTGTTAAATATTTTAAGGGGCGTTTTGGACTATTCCTGCGTATAATTATAAAGTTAGGGGTTTAATGTTAATAATTCAATTACTT-GGGGGTTAAAGGAGATAACCTTGAGTTAAAT</genome_strand>
        <mrna_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTG-AAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGT-AACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="31351" PGL_stop="31527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31351" e_stop="31527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="31351" e_stop="31527" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31351" stop="31527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTTCTCCCATACAATGCCTCGAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTATGAGAACTCTGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATGACACATGCACGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  M  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  F  S  H  T  M  P  R  M  G  P  Y  Q  Y  L  S  D  S  Y  C  C  M  R  T  L  L  R  V  R  S  Y  P  N  D  H  Q  I  L  *  H  M  H  E  A  Y  P  P  T  L  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  S  P  I  Q  C  L  E  W  G  H  I  N  T  *  V  I  A  I  V  V  *  E  L  C  *  G  *  E  V  I  P  M  T  T  K  F  Y  D  T  C  T  K  H  I  L  Q  H  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0002G01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="33825" PGL_stop="34155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33825" e_stop="34155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="33825" e_stop="34155" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33825" stop="34155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGGCCAGACCTATATACTTTTTCAAGTATCACAGACTCACCCACCATGGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAACAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  S  L  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  G  Q  T  Y  I  L  F  Q  V  S  Q  T  H  P  P  W  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  S  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  V  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  A  R  P  I  Y  F  F  K  Y  H  R  L  T  H  H  G  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  N  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  S  I  T  D  S  P  T  M  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  T  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  V  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0002G01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="34756" PGL_stop="35419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34756" e_stop="35419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="34756" e_stop="35419" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34756" stop="35419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCTCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGTAGTAACTGACATCCTACCTTGCTCTAGGCACAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGACGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTTGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTTAAGTCTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCCTGTTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATCCCTCATTCTGTACTTGTTCATTCTCCCCATCCTCACCCTCT</gDNA_template>
            <first_frame> N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  *  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  D  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  L  L  M  T  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  *  V  W  R  F  Q  F  Q  E  L  T  E  K  F  L  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  R  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  C  M  L  Y  L  R  N  L  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  *  G  R  L  G  W  Q  S  L  I  L  Y  L  F  I  L  P  I  L  T  L  </first_frame>
            <second_frame>  I  L  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  V  V  T  D  I  L  P  C  S  R  H  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  T  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  C  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  F  K  S  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  C  T  S  G  T  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S </second_frame>
            <third_frame>   S  S  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  M  *  *  L  T  S  Y  L  A  L  G  T  R  T  H  L  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  *  R  S  L  E  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  R  H  P  Q  I  Q  H  P  L  S  L  E  V  S  I  S  R  T  Y  *  K  V  P  V  D  H  L  S  L  *  A  L  *  S  D  E  E  T  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  L  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  S  G  P  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  V  L  V  H  S  P  H  P  H  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34757" stop="34963"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSCGLKQSWVAYLDNARNLASYVVTDILPCSRHKNSSLFLSLKVRGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35476" PGL_stop="34923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35476" e_stop="34923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="35476" e_stop="34923" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35476" stop="34923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAACAGGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGACTTAAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCAACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  G  K  R  G  *  G  W  G  E  *  T  S  T  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  T  G  T  F  Q  *  V  L  E  I  E  T  S  R  L  K  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  Q  E  L  F  S  K  F  L  K  L  K  P  P  D  L  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  Q  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  V  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  Q  L  R  K  W  *  E  R  V  R  M  G  R  M  N  K  Y  R  M  R  D  C  H  P  N  L  P  *  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  N  R  N  F  S  V  S  S  *  N  *  N  L  Q  T  *  R  V  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  N  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  S  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35475" stop="34924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEDGENEQVQNEGLPPQPTLEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPEVQHAATVAPRMDASLEIGTFPRLTTGPIMTNDQQELFSKFLKLKPPDLKGAESEDAYDFLVDCHEQLHKMGIVERFGVEFVTYQFQGNVKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="56916" PGL_stop="56299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56916" e_stop="56299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="56916" e_stop="56299" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56916" stop="56299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAAGGTAAATGGACAGCGCATAAAAATCTATCTAGGGCATGCTGAATCGGCGAATGAAGTGATCGAGACATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCTGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGTATTTTTTTTCTATAAATGAGTTTTAAATTTGCAGGCACATCACCCGGAAATTCTGTAGAAAAATACTCAGCAGTAGCCACTGACGGATACAACGACGGACCATTGCGAATGAAACGGATCGTCGTATGCATCCGTCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGACGGGGCGTCGCATGTGCGACGGACCGTCAACGGGGAACTGTCGCGTGATTAATGAAATTTACCCGACCCGACCCGGCTGGACCCCTTTTCAAAATTTGACC</gDNA_template>
            <first_frame> G  D  L  V  L  L  F  N  S  R  L  R  L  F  P  G  K  L  K  S  K  W  T  G  P  Y  T  V  T  Q  L  F  P  H  G  A  V  E  L  E  T  K  E  G  V  R  F  K  V  N  G  Q  R  I  K  I  Y  L  G  H  A  E  S  A  N  E  V  I  E  T  Y  H  L  D  E  V  *  V  I  K  W  P  Q  S  C  R  D  I  K  S  G  A  C  W  E  A  T  Q  Y  L  S  S  F  *  *  W  *  Y  F  F  S  I  N  E  F  *  I  C  R  H  I  T  R  K  F  C  R  K  I  L  S  S  S  H  *  R  I  Q  R  R  T  I  A  N  E  T  D  R  R  M  H  P  S  H  Q  V  R  I  S  V  I  F  E  I  R  A  H  T  T  E  P  T  T  G  R  R  M  C  D  G  P  S  T  G  N  C  R  V  I  N  E  I  Y  P  T  R  P  G  W  T  P  F  Q  N  L  T </first_frame>
            <second_frame>  G  I  *  C  F  Y  S  I  P  D  C  A  C  F  Q  A  N  S  S  P  N  G  L  V  L  T  R  L  P  N  Y  S  L  M  E  Q  L  S  W  K  L  R  R  V  C  G  S  R  *  M  D  S  A  *  K  S  I  *  G  M  L  N  R  R  M  K  *  S  R  H  T  I  L  M  K  S  E  *  S  S  G  P  S  R  A  A  T  L  N  L  A  L  V  G  R  Q  P  N  T  Y  R  L  F  N  N  G  S  I  F  F  L  *  M  S  F  K  F  A  G  T  S  P  G  N  S  V  E  K  Y  S  A  V  A  T  D  G  Y  N  D  G  P  L  R  M  K  R  I  V  V  C  I  R  H  T  R  Y  V  F  L  S  F  L  K  L  G  H  T  R  R  N  L  R  R  G  V  A  C  A  T  D  R  Q  R  G  T  V  A  *  L  M  K  F  T  R  P  D  P  A  G  P  L  F  K  I  *   </second_frame>
            <third_frame>   G  F  S  A  S  I  Q  F  Q  I  A  L  V  S  R  Q  T  Q  V  Q  M  D  W  S  L  H  G  Y  P  T  I  P  S  W  S  S  *  V  G  N  *  G  G  C  A  V  Q  G  K  W  T  A  H  K  N  L  S  R  A  C  *  I  G  E  *  S  D  R  D  I  P  S  *  *  S  L  S  N  Q  V  A  P  V  V  P  R  H  *  I  W  R  L  L  G  G  N  P  I  L  I  V  F  L  I  M  V  V  F  F  F  Y  K  *  V  L  N  L  Q  A  H  H  P  E  I  L  *  K  N  T  Q  Q  *  P  L  T  D  T  T  T  D  H  C  E  *  N  G  S  S  Y  A  S  V  T  P  G  T  Y  F  C  H  F  *  N  *  G  T  H  D  G  T  Y  D  G  A  S  H  V  R  R  T  V  N  G  E  L  S  R  D  *  *  N  L  P  D  P  T  R  L  D  P  F  S  K  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56916" stop="56686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDLVLLFNSRLRLFPGKLKSKWTGPYTVTQLFPHGAVELETKEGVRFKVNGQRIKIYLGHAESANEVIETYHLDEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56579" stop="56352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSFKFAGTSPGNSVEKYSAVATDGYNDGPLRMKRIVVCIRHTRYVFLSFLKLGHTRRNLRRGVACATDRQRGTVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56511" stop="56299"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQRRTIANETDRRMHPSHQVRISVIFEIRAHTTEPTTGRRMCDGPSTGNCRVINEIYPTRPGWTPFQNLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58222" PGL_stop="58955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58222" e_stop="58955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="58222" e_stop="58955" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58222" stop="58955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTATAATTCTAGTACCTAGCAAATAGGAGCGAAAATTCTCAAAAGCAAAGACTACTGTGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGTTTTACTAGCATAGTAAATTGGGTGGAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTGTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACCGAATGCTTTAAGACAGGATTCATCAAAACAAAATTTACATTCTTTCTCCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTAAACTTTAGCTCGATCAACCTCTATGCCCTTTTCTGAAATGCGATGACCCGACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATAAATTGGTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCATCCATAAAAATCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTCTTC</gDNA_template>
            <first_frame> H  Y  N  S  S  T  *  Q  I  G  A  K  I  L  K  S  K  D  Y  C  E  E  F  L  L  S  H  C  V  V  L  L  G  F  I  *  G  F  T  S  I  V  N  W  V  E  D  F  V  S  S  L  S  Q  Y  Y  T  K  S  H  P  T  S  I  A  H  Y  L  K  W  T  V  P  I  R  R  N  N  D  R  C  R  H  *  L  L  F  *  L  T  E  C  F  K  T  G  F  I  K  T  K  F  T  F  F  L  Q  *  F  A  Q  W  V  C  N  L  *  K  V  F  D  E  S  P  I  K  T  C  M  P  K  K  A  S  H  T  F  H  R  D  R  R  G  K  S  L  Y  Y  L  N  F  S  S  I  N  L  Y  A  L  F  *  N  A  M  T  R  H  N  T  L  F  H  H  E  M  T  L  F  P  V  *  Y  Q  I  A  V  F  T  S  L  K  N  L  R  *  I  G  Q  A  S  L  K  *  I  T  N  H  R  K  I  I  H  K  N  L  Y  S  I  L  H  H  V  R  K  Y  *  H  H  T  S  L  K  G  C  G  C  I  A  Q  P  K  R  H  S   </first_frame>
            <second_frame>  T  I  I  L  V  P  S  K  *  E  R  K  F  S  K  A  K  T  T  V  R  S  S  C  S  V  T  V  *  F  F  W  A  S  F  R  V  L  L  A  *  *  I  G  W  R  I  L  F  L  L  C  P  N  T  T  P  R  A  T  P  L  A  S  H  I  T  S  N  G  L  F  Q  S  G  E  I  M  I  G  A  D  T  N  F  S  F  S  S  P  N  A  L  R  Q  D  S  S  K  Q  N  L  H  S  F  S  S  N  L  H  N  G  C  A  I  F  E  K  S  L  M  N  L  R  *  K  P  A  C  P  R  K  L  L  T  P  F  T  E  I  G  G  G  S  L  S  I  T  *  T  L  A  R  S  T  S  M  P  F  S  E  M  R  *  P  D  T  I  P  S  F  T  M  K  *  H  F  S  Q  F  S  T  R  L  Q  S  S  H  L  L  R  T  S  D  K  L  V  K  H  R  S  N  E  S  P  T  T  E  K  S  S  I  K  I  S  I  V  S  S  T  M  S  E  N  I  D  I  I  H  L  *  K  V  A  G  A  L  H  N  P  N  D  I  L  </second_frame>
            <third_frame>   L  *  F  *  Y  L  A  N  R  S  E  N  S  Q  K  Q  R  L  L  *  G  V  L  A  Q  S  L  C  S  S  S  G  L  H  L  G  F  Y  *  H  S  K  L  G  G  G  F  C  F  F  S  V  P  I  L  H  Q  E  P  P  H  *  H  R  T  L  P  Q  M  D  C  S  N  P  E  K  *  *  *  V  Q  T  L  T  S  L  L  A  H  R  M  L  *  D  R  I  H  Q  N  K  I  Y  I  L  S  P  V  I  C  T  M  G  V  Q  S  L  K  S  L  *  *  I  S  D  K  N  L  H  A  Q  E  S  F  S  H  L  S  Q  R  S  A  G  E  V  S  L  L  P  K  L  *  L  D  Q  P  L  C  P  F  L  K  C  D  D  P  T  Q  Y  P  L  S  P  *  N  D  T  F  P  S  L  V  P  D  C  S  L  H  I  S  *  E  P  Q  I  N  W  S  S  I  A  Q  M  N  H  Q  P  Q  K  N  H  P  *  K  S  L  *  Y  P  P  P  C  Q  K  I  L  T  S  Y  I  S  E  R  L  R  V  H  C  T  T  Q  T  T  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58349" stop="58597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGWRILFLLCPNTTPRATPLASHITSNGLFQSGEIMIGADTNFSFSSPNALRQDSSKQNLHSFSSNLHNGCAIFEKSLMNLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="67980" PGL_stop="68737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67980" e_stop="68737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="67980" e_stop="68737" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67980" stop="68629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67987" stop="68499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67988" stop="68542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68128" stop="68737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68133" stop="68627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGTTGCTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATTAATTGTAGCTTATTTTTGGTGAGAAATTCAGAACATAGTTATAAGCGTGCTTCTCTTCCATGTTCCTATAAAACTTGTTTTAGTTCTACTCTTTATTAATCAAGTGTA</gDNA_template>
            <first_frame> S  V  A  C  P  W  F  *  Y  A  V  K  Q  Q  R  S  A  S  L  G  D  *  R  L  V  L  G  I  K  T  S  L  L  H  *  *  W  R  I  S  I  S  K  F  E  T  *  R  P  S  *  *  Q  A  *  Q  A  *  N  L  F  C  T  E  K  P  S  S  N  K  G  Q  G  F  F  G  S  I  F  G  K  Q  *  K  S  G  A  *  S  K  E  E  S  *  E  I  *  Y  R  S  S  Y  R  *  R  I  *  I  H  R  D  G  L  N  V  G  C  C  *  T  S  H  T  G  G  C  I  S  C  *  I  C  N  S  K  L  P  T  S  N  R  S  G  Y  Q  *  Y  D  R  I  *  R  H  *  R  *  G  *  H  *  G  Y  Q  Q  K  *  *  *  *  *  *  *  *  *  W  R  F  F  S  R  K  R  I  *  A  Y  R  K  G  F  S  *  E  S  I  E  E  E  A  T  A  C  K  S  S  *  H  S  *  A  L  L  A  L  R  T  L  I  V  A  Y  F  W  *  E  I  Q  N  I  V  I  S  V  L  L  F  H  V  P  I  K  L  V  L  V  L  L  F  I  N  Q  V   </first_frame>
            <second_frame>  Q  L  L  A  L  G  S  D  M  Q  S  N  S  K  D  L  L  H  L  E  T  E  G  L  S  L  E  S  K  L  L  F  C  T  S  D  G  G  S  Q  S  L  N  L  K  P  D  D  L  P  D  N  K  P  N  K  P  E  I  S  S  V  P  R  S  Q  V  L  T  K  V  K  D  F  L  G  V  F  L  E  N  N  R  K  V  E  L  E  A  K  K  N  P  E  K  Y  D  I  E  A  L  T  G  E  E  S  E  Y  I  E  M  D  L  M  L  G  V  A  E  L  H  T  Q  E  A  V  S  A  A  E  S  A  I  A  S  Y  Q  P  V  I  D  L  D  T  N  D  T  T  E  S  E  D  T  S  D  E  D  D  I  E  D  T  N  K  S  D  D  D  D  D  D  D  D  D  G  G  S  S  L  G  K  E  S  K  L  T  E  K  D  S  P  K  K  A  L  K  R  K  R  Q  P  V  N  R  A  N  I  V  E  L  S  *  R  *  G  H  *  L  *  L  I  F  G  E  K  F  R  T  *  L  *  A  C  F  S  S  M  F  L  *  N  L  F  *  F  Y  S  L  L  I  K  C  </second_frame>
            <third_frame>   S  C  L  P  L  V  L  I  C  S  Q  T  A  K  I  C  F  T  W  R  L  K  A  C  P  W  N  Q  N  F  S  F  A  L  V  M  A  D  L  N  L  *  I  *  N  L  T  T  F  L  I  T  S  L  T  S  L  K  S  L  L  Y  R  E  A  K  F  *  Q  R  S  R  I  F  W  E  Y  F  W  K  T  I  E  K  W  S  L  K  Q  R  R  I  L  R  N  M  I  S  K  L  L  P  V  K  N  L  N  T  *  R  W  T  *  C  W  V  L  L  N  F  T  H  R  R  L  Y  Q  L  L  N  L  Q  *  Q  V  T  N  Q  *  S  I  W  I  P  M  I  R  Q  N  L  K  T  L  A  M  R  M  T  L  R  I  P  T  K  V  M  M  M  M  M  M  M  M  M  E  V  L  L  *  E  K  N  L  S  L  Q  K  R  I  L  L  R  K  H  *  R  G  S  D  S  L  *  I  E  L  T  *  L  S  S  L  S  A  K  D  I  N  C  S  L  F  L  V  R  N  S  E  H  S  Y  K  R  A  S  L  P  C  S  Y  K  T  C  F  S  S  T  L  Y  *  S  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67981" stop="68616"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLALGSDMQSNSKDLLHLETEGLSLESKLLFCTSDGGSQSLNLKPDDLPDNKPNKPEISSVPRSQVLTKVKDFLGVFLENNRKVELEAKKNPEKYDIEALTGEESEYIEMDLMLGVAELHTQEAVSAAESAIASYQPVIDLDTNDTTESEDTSDEDDIEDTNKSDDDDDDDDDGGSSLGKESKLTEKDSPKKALKRKRQPVNRANIVELS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="97311" PGL_stop="98313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97311" e_stop="97332"/>
            <exon e_start="97703" e_stop="98313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.000" e_score="0.591"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.591">
            <gDNA_exon_boundary e_start="97311" e_stop="97332" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97333" i_stop="97702" i_length="370"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="97703" e_stop="98313" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97311" stop="97332"/>
              <exon start="97703" stop="98313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCCCCCCTCTTCCTAAACT : GAAAATGTTATTTGTAGTTTTGATGATTTGACAAACTTAGGGACCTCATAAAGGTACCGGGTTTTCTACTTGAGTATTGCAGGTGTATTGTTCGAAGTATTGGAGATGAAACAAAACTCAGGGACCTAATAGAGGTACCAGACTCTCATGATGATGAGCCAGTCAACTGCCAGCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTGTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCAAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGATCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT</gDNA_template>
            <first_frame> N  S  P  L  F  L  N   : *  K  C  Y  L  *  F  *  *  F  D  K  L  R  D  L  I  K  V  P  G  F  L  L  E  Y  C  R  C  I  V  R  S  I  G  D  E  T  K  L  R  D  L  I  E  V  P  D  S  H  D  D  E  P  V  N  C  Q  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  L  F  F  S  C  C  N  L  I  N  T  F  Q  E  L  L  Q  R  Q  I  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  G  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  F  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  W  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G </first_frame>
            <second_frame>  T  P  P  S  S  *  T  :  E  N  V  I  C  S  F  D  D  L  T  N  L  G  T  S  *  R  Y  R  V  F  Y  L  S  I  A  G  V  L  F  E  V  L  E  M  K  Q  N  S  G  T  *  *  R  Y  Q  T  L  M  M  M  S  Q  S  T  A  S  W  R  W  C  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  F  S  S  V  V  A  T  *  *  T  L  F  K  N  S  C  K  G  K  Y  K  A  K  A  E  S  F  L  G  Q  Q  Q  H  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  S  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  L  L  S  N  R  D  L  L  L  N  G  K  I  D  N  S  F  L  R  L   </second_frame>
            <third_frame>   L  P  P  L  P  K  L :   K  M  L  F  V  V  L  M  I  *  Q  T  *  G  P  H  K  G  T  G  F  S  T  *  V  L  Q  V  Y  C  S  K  Y  W  R  *  N  K  T  Q  G  P  N  R  G  T  R  L  S  *  *  *  A  S  Q  L  P  A  G  D  G  A  E  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  T  F  L  Q  L  L  Q  L  D  K  H  F  S  R  T  L  A  K  A  N  T  K  Q  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  Q  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  L  A  C  *  A  I  E  I  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97729" stop="97959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDKLRDLIKVPGFLLEYCRCIVRSIGDETKLRDLIEVPDSHDDEPVNCQLEMVQKVGAHFPMASESVTLPTNGKEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="99281" PGL_stop="97875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99281" e_stop="99268"/>
            <exon e_start="98365" e_stop="97875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="99281" e_stop="99268" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99267" i_stop="98366" i_length="902"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="98365" e_stop="97875" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99281" stop="99268"/>
              <exon start="98365" stop="97875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGCATTTTTTTA : GATTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGAGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGATCTCTATTGCTCAACAAGCCAAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTGAACACAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTGCTTTGTATTTGCCTTTGCAAGAGTTCTTGAAAAGTGTTTATCAAGTTGCAACAACTGAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGTCACACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</gDNA_template>
            <first_frame> D  A  F  F  * :   I  F  N  R  F  H  *  S  S  K  A  K  E  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  R  S  L  L  L  N  K  P  K  *  K  N  N  L  P  T  K  L  S  H  L  D  N  L  D  F  E  H  N  T  P  I  P  L  *  I  *  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  K  S  S  R  C  C  C  C  P  R  N  D  S  A  F  A  L  Y  L  P  L  Q  E  F  L  K  S  V  Y  Q  V  A  T  T  E  E  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  G  H  T  F  *  R  H  R  E  V  C  T  Y  F  L  H  H  L  Q  </first_frame>
            <second_frame>  M  H  F  F   : R  F  S  I  V  F  T  N  L  Q  K  Q  K  R  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  R  *  A  I  D  L  Y  C  S  T  S  Q  S  R  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  L  N  T  T  H  Q  F  L  Y  R  F  R  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  K  A  P  D  V  A  V  V  L  G  M  I  L  P  L  L  C  I  C  L  C  K  S  S  *  K  V  F  I  K  L  Q  Q  L  K  K  S  V  *  E  S  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  V  G  R  V  T  L  S  D  A  I  G  K  C  A  P  T  F  C  T  I  S  S </second_frame>
            <third_frame>   C  I  F  L  :  D  F  Q  S  F  S  L  I  F  K  S  K  R  E  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  V  K  Q  *  I  S  I  A  Q  Q  A  K  V  E  K  Q  S  T  H  *  A  I  P  P  G  Q  P  R  L  *  T  Q  H  T  N  S  F  I  D  L  G  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  L  D  E  K  L  Q  M  L  L  L  S  *  E  *  F  C  L  C  F  V  F  A  F  A  R  V  L  E  K  C  L  S  S  C  N  N  *  R  K  V  F  R  K  V  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  G  S  H  F  L  T  P  S  G  S  V  H  L  L  S  A  P  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98112" stop="97918"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKSSRCCCCPRNDSAFALYLPLQEFLKSVYQVATTEEKCLGKCLLYGQVTFLNFFAIGWKGHTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="110203" PGL_stop="110593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110203" e_stop="110593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="110203" e_stop="110593" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110203" stop="110593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGTCGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAGTGGCAGGACGAGCCGTCACAGGCGTGACGGGCCGTCACAGACCCTTGGTGAAAATTGAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACAGACCGTCGCAGGCACGACGGGCTGTCACAGGCTGCGTAAACCCTGACTGGGTCGGATTTCTGTTAAATATTTTAAGGGGCGTTTTGGACTATTCCTGCGTATAATTATAAAGTTAGGGGTTTAATGTTAATAATTCAATTACTTGGGGGTTAAAGGAGATAACCTTGAGTTAAAT</gDNA_template>
            <first_frame> L  V  D  G  S  H  D  G  P  S  W  A  R  R  T  V  E  G  V  S  F  Q  N  T  *  N  S  E  I  W  V  L  R  S  T  L  *  T  S  R  R  S  G  R  T  S  R  H  R  R  D  G  P  S  Q  T  L  G  E  N  *  V  S  E  L  C  D  G  S  S  R  T  D  R  R  R  H  D  G  L  S  Q  A  A  *  T  L  T  G  S  D  F  C  *  I  F  *  G  A  F  W  T  I  P  A  Y  N  Y  K  V  R  G  L  M  L  I  I  Q  L  L  G  G  *  R  R  *  P  *  V  K  </first_frame>
            <second_frame>  *  S  T  D  P  T  T  D  R  H  G  H  D  G  P  S  R  G  S  R  S  K  T  L  R  I  L  K  F  G  Y  *  D  R  L  S  E  L  R  D  E  V  A  G  R  A  V  T  G  V  T  G  R  H  R  P  L  V  K  I  E  S  L  N  F  V  T  E  A  A  G  Q  T  V  A  G  T  T  G  C  H  R  L  R  K  P  *  L  G  R  I  S  V  K  Y  F  K  G  R  F  G  L  F  L  R  I  I  I  K  L  G  V  *  C  *  *  F  N  Y  L  G  V  K  G  D  N  L  E  L  N </second_frame>
            <third_frame>   S  R  R  I  P  R  R  T  V  M  G  T  T  D  R  R  G  G  L  V  P  K  H  L  E  F  *  N  L  G  T  E  I  D  S  L  N  F  A  T  K  W  Q  D  E  P  S  Q  A  *  R  A  V  T  D  P  W  *  K  L  S  L  *  T  L  *  R  K  Q  Q  D  R  P  S  Q  A  R  R  A  V  T  G  C  V  N  P  D  W  V  G  F  L  L  N  I  L  R  G  V  L  D  Y  S  C  V  *  L  *  S  *  G  F  N  V  N  N  S  I  T  W  G  L  K  E  I  T  L  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0002G01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 259 chains have been computed
$ 
$ memory statistics:
$ 76144 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 5438 bytes was the average size of a spliced alignment
$ 16176 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1617 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 323 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:27:58
-->
