<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:38:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703300" ref_strand="+" ref_description="SGN-E703300 [FA21AE06]">
      <seq>gagaataataatataataataaaattgtggaggtcggttgggttgggtgaaaaaccctaaaagtagatttggagatcagatctgaaattgttgaatggattcaagcaggagggcggtagagtcgtattggaggtcacggatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttagatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcagagtgatcaaatatgctgtcggaaaatcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaaaggtcaacccgaccctttgaaggctgatgcactcaataaagcagtccgtgaaacagcgcaggaagcattatctgctctattttcttcacaagacactaaacctcccacagaaaatctaaatcttggtggcagaatacaaggctttggtaataccagttatgaaattcatgatgataagaggtctttcctcagtgacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttatacaagtccaaatcttcagagctcattgacaactcaacctgacacttctcacaatcatacttctcgcttttcaacaaatcctgcttctgcaacttggactcacactgaaacaacaacaaagccacattctgctgaaaagacccgagaagacaggttattagaaactattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69624" stop="71157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69924" g_stop="70224" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70857" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="850" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E703300" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69924" e_stop="70224"/>
          <exon e_start="70309" e_stop="70857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCA</genome_strand>
        <mrna_strand>GAGAATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACAAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720017" ref_strand="+" ref_description="SGN-E720017 [FC09CC11]">
      <seq>aataataatataataataaaattgtggaggtcggttgggttgggtgaaaaaccctaaaagtagatttggagatcaaatctgaaattgttgaatggattcaagcaggagggcggtagagtcgtattggaggtcacggatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttaaatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcaaagtgatcaaatatgctgtcggaaaatcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaaaggtcaacccgaccctttgaaggctgatgcactcaataaagcagtccgtgaaacagcgcaggaagcattatctgctctattttcttcacaagacactaaacctcccacagaaaatctaaatcttggtggcagaatacaaggctttggtaataccagttatgaaattcatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69627" stop="70882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69927" g_stop="70224" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70582" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="572" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E720017" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69927" e_stop="70224"/>
          <exon e_start="70309" e_stop="70582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATG</genome_strand>
        <mrna_strand>AATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAAATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAAATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAAAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334423" ref_strand="+" ref_description="SGN-E334423 [cTOD-23-C3]">
      <seq>taaaagtagatttggagatcagatctgaaattgttgaatggattcaagcaggagggcggtagagtcgtattggaggtcacggatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttagatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcagagtgatcaaatatgctgtcggaaaatcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaaaggtcaacccgaccctttgaaggctgatgcactcaataaagcagtccgtgaaacagcgcaggaagcattatctgctctattttcttcacaagacactaaacctcccacagaaaatctaaatcttggtggcagaatacaaggctttggtaataccagttatgaaattcatgatgataagaggtctttcctcagtgacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttatacaagtccaaatcttcagagctcattgacaactcaacctgacacttctcacaatcatacttctcgcttttcaacaatcctgctttctgcacttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69681" stop="71085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69981" g_stop="70224" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70785" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="720" r_length="476" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E334423" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69981" e_stop="70224"/>
          <exon e_start="70309" e_stop="70785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGC-TTCTGCAACTTGGACT</genome_strand>
        <mrna_strand>TAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAAC-AATCCTGCTTTCTGC-ACTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334418" ref_strand="+" ref_description="SGN-E334418 [cTOD-23-A5]">
      <seq>taaaagtagatttggagatcagatctgaaattgttgaatggattcaagcaggagggcggtagagtcgtattggaggtcacggatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttagatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcagagtgatcaaatatgctgtcggaaaatcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaaaggtcaacccgaccctttgaaggctgatgcactcaataaagcagtccgtgaaacagcgcaggaagcattatctgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69681" stop="70788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69981" g_stop="70224" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70488" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="424" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E334418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69981" e_stop="70224"/>
          <exon e_start="70309" e_stop="70488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTA</genome_strand>
        <mrna_strand>TAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246494" ref_strand="+" ref_description="SGN-E246494 [cLEF-45-C3]">
      <seq>agcaggagggcggtagagtcgtattggaggtcacggatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttagatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcagagtgatcaaatatgctgtcggaaaatcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaaaggtcaacccgaccctttgaaggctgatgcactcaataaagcagtccgtgaaacagcgcaggaagcattatctgctctattttcttcacaagacactaaacctcccacagaaaatctaaatcttggtggcagaatacaaggctttggtaataccagttatgaaattcatgatgataagaggtctttcctcagtgacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69727" stop="70987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70027" g_stop="70224" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70687" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="577" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E246494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70027" e_stop="70224"/>
          <exon e_start="70309" e_stop="70687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATA</genome_strand>
        <mrna_strand>AGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304237" ref_strand="+" ref_description="SGN-E304237 [cLEX-6-P19]">
      <seq>ttgtattgtaggtcacggatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttagatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcagagtgatcaaatatgctgtcggaaaatcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaaaggtcaacccgaccctttgaaggctgatgcactcaataaagcagtccgtgaaacagcgcaggaagcattatctgctctattttcttcacaagacactaaacctcccacagaaaatctaaatcttggtggcagaatacaaggctttggtaataccagttatgaaattcatgatgataagaggtctttcctcagtgacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69744" stop="70987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70045" g_stop="70224" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70687" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="559" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E304237" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70045" e_stop="70224"/>
          <exon e_start="70309" e_stop="70687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATA</genome_strand>
        <mrna_strand>TTGTATTGTAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332496" ref_strand="+" ref_description="SGN-E332496 [cTOD-17-J8]">
      <seq>gatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttagatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcagagtgatcaaatatgctgtcggaaaantcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69762" stop="70709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70062" g_stop="70224" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70409" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="265" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E332496" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70062" e_stop="70224"/>
          <exon e_start="70309" e_stop="70409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAA-TCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAA</genome_strand>
        <mrna_strand>GATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAGAGTGATCAAATATGCTGTCGGAAAANTCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340522" ref_strand="+" ref_description="SGN-E340522 [cTOF-1-F8]">
      <seq>aaggctttggtaataccagttatgaaattcatgatgataagaggtctttcctcagtgacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttatacaagtccaaatcttcagagctcattgacaactcaacctgacacttctcacaatcatacttctcgcttttcaacaaatcctgcttctgcaacttggactcacactgaaacaacaaccaagccacattctgctgaaaagacccgagaagacaggttattagaaactattgcaacctccggtggagttcgtctgcagccaactcgggatgcacttcaggtcttccttctcgaggcttcaaaattagatgccttggctttgactcatgcccttgagtcaaagctgcaatcaccttcgtggcaggttcgtgtgaaagcaatctgtgtcctcgaggccatcttgaggaaaaaagatgatgctcactttggtactatggcatcttatttcactgaaaatagagatgttgtggtaaaatgctatgaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70247" stop="71575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70547" g_stop="70986" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71275" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="565" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E340522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70547" e_stop="70986"/>
          <exon e_start="71151" e_stop="71275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTTGTCTGTTGCTTAGAATTTCAAAAGTTGCTCAGATACTCACGCATTTATCTTCTTTATTTGACACTGCAAACTTTTTTTTTATTTGAACTGATAGACTCTGCTAATTAATGTTGATCTCAAACTAGTTCACATATTTTTACTTGGTCTTCTTTTATGCCAGGTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCC</genome_strand>
        <mrna_strand>AAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG....................................................................................................................................................................GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542716" ref_strand="+" ref_description="SGN-E542716 [TUS-64-C14]">
      <seq>gataagaggtctttcctcagtgacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttatacaagtccaaatcttcagagctcattgacaactcaacctgacacttctcacaatcatacttctcgcttttcaacaaatcctgcttctgcaacttggactcacactgaaacaacaaccaagccacattctgctgaaaagacccgagaagacaggttattagaaactattgcaacctccggtggagttcgtctgcagccaactcgggatgcacttcaggtcttccttctcgaggcttcaaaattagatgccttggctttgactcatgcccttgagtcaaagctgcaatcaccttcgtggcaggttcgtgtgaaagcaatctgtgtcctcgaggccatcttgaggaaaaaagatgatgctcactttggtactatggcatcttatttcactgaaaatagagatgttgtggtaaaatgctatgaatctccccaagcatcattaagagaaaaagcaaacaaagtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaaataagattgcatccacctctgccacccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70282" stop="72699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70582" g_stop="70986" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71306" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="561" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72201" g_stop="72399" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="760" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E542716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70582" e_stop="70986"/>
          <exon e_start="71151" e_stop="71306"/>
          <exon e_start="72201" e_stop="72399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTTGTCTGTTGCTTAGAATTTCAAAAGTTGCTCAGATACTCACGCATTTATCTTCTTTATTTGACACTGCAAACTTTTTTTTTATTTGAACTGATAGACTCTGCTAATTAATGTTGATCTCAAACTAGTTCACATATTTTTACTTGGTCTTCTTTTATGCCAGGTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAAGTAAGATTTCCAAGATGAACACTCTGCATTTATTTGCCGTCCTCTTATAGAAATGAAGAAACACATACACAAATATTAGTGCAAAGATTAATGTTTTTTTAAAGAGAAGACATGGAGAGAAAGACACCGAGGGAGAGAAAAAAAGAAACTCCAATTTGCATTTATCACATGGTGCTCTAATATTATGTTCACACTTATATTCTTCTAGGTTTTATAGGTCCCTGCTTCTATGCCTTCTAGTTTCATTTTCAAAATCTGCATGTATACTTGATAATTGTATATCTTTCACATAGTGGGTAACTATAAGTTTAAAGGTTGATTGCCATTGATCAGATTTGTAGCTTAGGTTATATATTATAAGGTGGGTATACACTCAAATCTCATCGTTCTGCTCAGAAAAAACTAGAGAAAATGGAGCTCGTCGCACCGGGCATGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGGTATTGCATAAGAGCGGGGTTTTACCTTGTGCACACCCAACGTGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTC</genome_strand>
        <mrna_strand>GATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG....................................................................................................................................................................GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAAATAAGATTGCATCCACCTCTGCCACCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364810" ref_strand="+" ref_description="SGN-E364810 [cLPT-4-C4]">
      <seq>gacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttatacaagtccaaatcttcagagctcattgacaactcaacctgacacttctcacaatcatacttctcgcttttcaacaaatcctgcttctgcaacttggactcacactgaaacaacaaccaagccacattctgctgaaaagacccgagaagacaggttattagaaactattgcaacctccggtggagttcgtctgcagccaactcgggatgcacttcaggtcttccttctcgaggcttcaaaattagatgccttggctttgacccatgcccttgagtcaaagctgcaatcaccttcgtggcaggttcgtgtgaaagcaatctgtgtcctcgaggccatcttgaggaaaaaagatgatgctcactttggtactatggcatcttatttcactgaaaatagagatgttgtggtaaaatgctatgaatctccccaagcatcattaagagaaaaagcaaacaaagtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70303" stop="72550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70603" g_stop="70986" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71306" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="540" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72201" g_stop="72250" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="590" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E364810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70603" e_stop="70986"/>
          <exon e_start="71151" e_stop="71306"/>
          <exon e_start="72201" e_stop="72250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTTGTCTGTTGCTTAGAATTTCAAAAGTTGCTCAGATACTCACGCATTTATCTTCTTTATTTGACACTGCAAACTTTTTTTTTATTTGAACTGATAGACTCTGCTAATTAATGTTGATCTCAAACTAGTTCACATATTTTTACTTGGTCTTCTTTTATGCCAGGTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAAGTAAGATTTCCAAGATGAACACTCTGCATTTATTTGCCGTCCTCTTATAGAAATGAAGAAACACATACACAAATATTAGTGCAAAGATTAATGTTTTTTTAAAGAGAAGACATGGAGAGAAAGACACCGAGGGAGAGAAAAAAAGAAACTCCAATTTGCATTTATCACATGGTGCTCTAATATTATGTTCACACTTATATTCTTCTAGGTTTTATAGGTCCCTGCTTCTATGCCTTCTAGTTTCATTTTCAAAATCTGCATGTATACTTGATAATTGTATATCTTTCACATAGTGGGTAACTATAAGTTTAAAGGTTGATTGCCATTGATCAGATTTGTAGCTTAGGTTATATATTATAAGGTGGGTATACACTCAAATCTCATCGTTCTGCTCAGAAAAAACTAGAGAAAATGGAGCTCGTCGCACCGGGCATGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGGTATTGCATAAGAGCGGGGTTTTACCTTGTGCACACCCAACGTGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGT</genome_strand>
        <mrna_strand>GACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACCCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG....................................................................................................................................................................GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246137" ref_strand="+" ref_description="SGN-E246137 [cLEF-40-M4]">
      <seq>acaatcatacttctcgcttttcaacaaatcctgcttctgcaacttggactcacactgaaacaacaaccaagccacattctgctgaaaagacccgagaagacaggttattagaaactattgcaacctccggtggagttcgtctgcagccaactcgggatgcacttcaggtcttccttctcgaggcttcaaaattagatgccttggctttgactcatgcccttgagtcaaagctgcaatcaccttcgtggcaggttcgtgtgaaagcaatctgtgtcctcgaggccatcttgaggaaaaaagatgatgctcactttggtactatggcatcttatttcactgaaaatagagatgttgtggtaaaatgctatgaatctccccaagcatcattaagagaaaaagcaaacaaagtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70436" stop="72651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70736" g_stop="70986" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71306" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="407" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72201" g_stop="72351" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="558" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E246137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70736" e_stop="70986"/>
          <exon e_start="71151" e_stop="71306"/>
          <exon e_start="72201" e_stop="72351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTTGTCTGTTGCTTAGAATTTCAAAAGTTGCTCAGATACTCACGCATTTATCTTCTTTATTTGACACTGCAAACTTTTTTTTTATTTGAACTGATAGACTCTGCTAATTAATGTTGATCTCAAACTAGTTCACATATTTTTACTTGGTCTTCTTTTATGCCAGGTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAAGTAAGATTTCCAAGATGAACACTCTGCATTTATTTGCCGTCCTCTTATAGAAATGAAGAAACACATACACAAATATTAGTGCAAAGATTAATGTTTTTTTAAAGAGAAGACATGGAGAGAAAGACACCGAGGGAGAGAAAAAAAGAAACTCCAATTTGCATTTATCACATGGTGCTCTAATATTATGTTCACACTTATATTCTTCTAGGTTTTATAGGTCCCTGCTTCTATGCCTTCTAGTTTCATTTTCAAAATCTGCATGTATACTTGATAATTGTATATCTTTCACATAGTGGGTAACTATAAGTTTAAAGGTTGATTGCCATTGATCAGATTTGTAGCTTAGGTTATATATTATAAGGTGGGTATACACTCAAATCTCATCGTTCTGCTCAGAAAAAACTAGAGAAAATGGAGCTCGTCGCACCGGGCATGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGGTATTGCATAAGAGCGGGGTTTTACCTTGTGCACACCCAACGTGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATA</genome_strand>
        <mrna_strand>ACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG....................................................................................................................................................................GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301677" ref_strand="+" ref_description="SGN-E301677 [cLEW-23-N13]">
      <seq>tgcaacttggactcacactgaaacaacaaccaagccacattctgctgaaaagacccgagaagacaggttattagaaactattgcaacctccggtggagttcgtctgcagccaactcgggatgcacttcaggtcttccttctcgaggcttcaaaattagatgccttggctttgactcatgcccttgagtcaaagctgcaatcaccttcatggcaggttcgtgtgaaagcaatctgtgtcctcgaggccatcttgaggaaaaaagatgatgctcactttggtactatggcatcttatttcactgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70473" stop="71543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70773" g_stop="70986" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71243" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="307" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E301677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70773" e_stop="70986"/>
          <exon e_start="71151" e_stop="71243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTTGTCTGTTGCTTAGAATTTCAAAAGTTGCTCAGATACTCACGCATTTATCTTCTTTATTTGACACTGCAAACTTTTTTTTTATTTGAACTGATAGACTCTGCTAATTAATGTTGATCTCAAACTAGTTCACATATTTTTACTTGGTCTTCTTTTATGCCAGGTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAAT</genome_strand>
        <mrna_strand>TGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCATGGCAG....................................................................................................................................................................GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313691" ref_strand="+" ref_description="SGN-E313691 [cTOA-12-P22]">
      <seq>ttctcgaggcttcaaaattagatgccttggctttgactcatgcccttgagtcaaagctgcaatcaccttcgtggcaggttcgtgtgaaagcaatctgtgtcctcgaggccatcttgaggaaaaaagatgatgctcactttggtactatggcatcttatttcactgaaaatagagatgttgtggtaaaatgctatgaatctccccaagcatcattaagagaaaaagcaaacaaagtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacatcagtaatgagaaagcgcctgaagctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70610" stop="72825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70910" g_stop="70986" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71306" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="233" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72201" g_stop="72525" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="558" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E313691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70910" e_stop="70986"/>
          <exon e_start="71151" e_stop="71306"/>
          <exon e_start="72201" e_stop="72525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTTGTCTGTTGCTTAGAATTTCAAAAGTTGCTCAGATACTCACGCATTTATCTTCTTTATTTGACACTGCAAACTTTTTTTTTATTTGAACTGATAGACTCTGCTAATTAATGTTGATCTCAAACTAGTTCACATATTTTTACTTGGTCTTCTTTTATGCCAGGTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAAGTAAGATTTCCAAGATGAACACTCTGCATTTATTTGCCGTCCTCTTATAGAAATGAAGAAACACATACACAAATATTAGTGCAAAGATTAATGTTTTTTTAAAGAGAAGACATGGAGAGAAAGACACCGAGGGAGAGAAAAAAAGAAACTCCAATTTGCATTTATCACATGGTGCTCTAATATTATGTTCACACTTATATTCTTCTAGGTTTTATAGGTCCCTGCTTCTATGCCTTCTAGTTTCATTTTCAAAATCTGCATGTATACTTGATAATTGTATATCTTTCACATAGTGGGTAACTATAAGTTTAAAGGTTGATTGCCATTGATCAGATTTGTAGCTTAGGTTATATATTATAAGGTGGGTATACACTCAAATCTCATCGTTCTGCTCAGAAAAAACTAGAGAAAATGGAGCTCGTCGCACCGGGCATGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGGTATTGCATAAGAGCGGGGTTTTACCTTGTGCACACCCAACGTGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATC</genome_strand>
        <mrna_strand>TTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG....................................................................................................................................................................GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304813" ref_strand="+" ref_description="SGN-E304813 [cLEX-10-F15]">
      <seq>atcccccgggctgagaattcgcacgaggatggntcttatttcactgaaaataagatgttgggtaaatgctatgaatctcccagctattaaagaaaaagcaaacaaagtcttaagtctttgaatgatggacaaacagctgatgctgggctcatgtaatggcacaaatgcttgtaccctgttgtcagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataattaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacatcagtaatgagaaagcgcctgaagctgatctcttttctggaatgacggttgacaaatcagatgctactgaaatccattcggtgaataatagaaatggacctgaactgtttgatatctttggttccagtgttgaagttcctcgggagcccaataattctagaaaggatgttcctgatttaatgaatagtctctctttgaatgggaatgagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70920" stop="73007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71219" g_stop="71306" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="106" r_length="79" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894">
            <donor d_prob="0.952" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72201" g_stop="72707" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="604" r_length="498" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E304813" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71219" e_stop="71306"/>
          <exon e_start="72201" e_stop="72707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAAGTAAGATTTCCAAGATGAACACTCTGCATTTATTTGCCGTCCTCTTATAGAAATGAAGAAACACATACACAAATATTAGTGCAAAGATTAATGTTTTTTTAAAGAGAAGACATGGAGAGAAAGACACCGAGGGAGAGAAAAAAAGAAACTCCAATTTGCATTTATCACATGGTGCTCTAATATTATGTTCACACTTATATTCTTCTAGGTTTTATAGGTCCCTGCTTCTATGCCTTCTAGTTTCATTTTCAAAATCTGCATGTATACTTGATAATTGTATATCTTTCACATAGTGGGTAACTATAAGTTTAAAGGTTGATTGCCATTGATCAGATTTGTAGCTTAGGTTATATATTATAAGGTGGGTATACACTCAAATCTCATCGTTCTGCTCAGAAAAAACTAGAGAAAATGGAGCTCGTCGCACCGGGCATGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGGTATTGCATAAGAGCGGGGTTTTACCTTGTGCACACCCAACGTGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCA</genome_strand>
        <mrna_strand>GATGG-NTCTTATTTCACTGAAAATA-AGATGTTG-GGTAAA-TGCTATGAATCTCCC--AGC-T-ATTAA-AGAAAAAGCAAACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGTCTT-TGAATGATGGACAAACAGCTGATGCTG-GGCTCATGTA-AT-GG-CA-CAAATGCTTGT-ACCCTGTTGT-CAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAA-TTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247936" ref_strand="+" ref_description="SGN-E247936 [cLEF-47-F6]">
      <seq>agcggctgcgggtttcccttgtcataaaaaaagtagagaaatgatacagagaactgttaatccagtggaacaattaaaggtgatgatacctaatttatttgaccaaaaaatataaaattctaggtaaaagagatgactaggagaacaaattatctcatgatcctccatgtcatgcaccattgtgattctgacatcagatccataaaggtgtgaatggcgggcatttaaacaagtctcttgcagagtttgggttatacatctcagcttcagaaggaaaaggaaaaaaacatttaatgtgcatattttggcatcttgcaacaaatgtatgattgcattatgtatcttccctagttgaagtcatgtgatgaatatgggcaggtcttaagtcttctgaatgatggacaaacagctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="71523" stop="72538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71823" g_stop="72238" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E247936" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71823" e_stop="72238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGC</genome_strand>
        <mrna_strand>AGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAGAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302693" ref_strand="+" ref_description="SGN-E302693 [cLEY-1-I11]">
      <seq>gaaaaggaaaaaaacatttaatgtgcatattttggcatcttgcaacaaatgtatgattgcattatgtatcttccctagttgaagtcatgtgatgaatatgggcaggtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="71796" stop="72785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72096" g_stop="72485" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E302693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72096" e_stop="72485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTT</genome_strand>
        <mrna_strand>GAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697980" ref_strand="+" ref_description="SGN-E697980 [FA04DE10]">
      <seq>cccttagtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacatcagtaatgagaaagcgcctgaagctgatctcttttctggaatgacggttgacaaatcagatgctactgaaatccattcggtgaataatagaaatggacctgaactgtttgatatctttggttccagtgttgaagttcctcgggagcccaataattctagaaaggatgttcctgatttaatgaatagtctctctttgaatgggaatgagtcatccatggagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgacccttgtcatcacgcttctaatgatgtcatgaatagcatactttcctcccaggctggtggagttaatgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="71901" stop="73148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72201" g_stop="72848" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="654" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E697980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72201" e_stop="72848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAAT</genome_strand>
        <mrna_strand>GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322385" ref_strand="+" ref_description="SGN-E322385 [cTOB-24-D2]">
      <seq>ttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacatcagtaatgagaaagcgcctgaagctgatctcttttctggaatgacggttgacaaatcagatgctactgaaatccattcggtgaataatagaaatggacctgaactgtttgatatctttggttccagtgttgaagttcctcgggagcccaataattctagaaaggatgttcctgatttaatgaatagtctctctttgaatgggaatgagtcatccatggagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgacccttgtcatcacgcttctaatgatgtcatgaatagcatactttcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="71911" stop="73124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72211" g_stop="72824" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E322385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72211" e_stop="72824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCC</genome_strand>
        <mrna_strand>TTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705556" ref_strand="+" ref_description="SGN-E705556 [FA27BH11]">
      <seq>gttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacatcagtaatgagaaagcgcctgaagctgatctcttttctggaatgacggttgacaaatcagatgctactgaaatccattcggtgaataatagaaatggacctgaactgtttgatatctttggttccagtgtttaagttcctcgggagcccaataattctagaaaggatgttcctgatttaatgaatagtctctctttgaatgggaatgagtcatccatggagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgacccttgtcatcacgcttctaatgatgtcatgaatagcatactttcctcccaggctggtggagttaatgcaaatcccatgtttcctttgggttctatgcagtataacttgcctcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattanggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="71979" stop="73425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72279" g_stop="73125" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E705556" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72279" e_stop="73125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACA</genome_strand>
        <mrna_strand>GTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTTAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTANGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428239" ref_strand="+" ref_description="SGN-E428239 [STM-50-A5]">
      <seq>ctctgatggatgatctatttggagacaattcgggcagcagctttagttccggccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacaccagtactgagaaggcgcctgaagctgatctcttttctggaatgacagttgacaaatcagatgctactgaaatccatttggtgaataatagaaatggacctgaactgtttgatatctttggtcccagtgttgaagttcctcaggaacccaataattctagaaaggatgttcctgatttgatgaatagtctctccttgaatgggaatgagtcatccatgaagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgatcctcgtcatcaggcttctaatgatgccatgaacagcatactttcctcccaggctggtggagctaatgcaaattccatgtttcctttgggtgctatgcagtataacttgcttcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactcctttgcacgctttccagttaccagcaattagggagcatgcacccatccactagtgctagtcatgctgctgattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72097" stop="73347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72397" g_stop="73047" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E428239" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72397" e_stop="73047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTG</genome_strand>
        <mrna_strand>CTCTGATGGATGATCTATTTGGAGACAATTCGGGCAGCAGCTTTAGTTCCGGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACACCAGTACTGAGAAGGCGCCTGAAGCTGATCTCTTTTCTGGAATGACAGTTGACAAATCAGATGCTACTGAAATCCATTTGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTCCCAGTGTTGAAGTTCCTCAGGAACCCAATAATTCTAGAAAGGATGTTCCTGATTTGATGAATAGTCTCTCCTTGAATGGGAATGAGTCATCCATGAAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGATCCTCGTCATCAGGCTTCTAATGATGCCATGAACAGCATACTTTCCTCCCAGGCTGGTGGAGCTAATGCAAATTCCATGTTTCCTTTGGGTGCTATGCAGTATAACTTGCTTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTTGCACGCTTTCCAGTTACCAGCAATTAGGGAGCATGCACCCATCCACTAGTGCTAGTCATGCTGCTGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479287" ref_strand="+" ref_description="SGN-E479287 [cSTD-9-I12]">
      <seq>ctctgatggatgatctatttggagacaattcgggcagcagctttagttccggccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacaccagtactgagaaggcgcctgaagctgatctcttttctggaatgacagttgacaaatcagatgctactgaaatccatttggtgaataatagaaatggacctgaactgtttgatatctttggtcccagtgttgaagttcctcaggaacccaataattctagaaaggatgttcctgatttgatgaatagtctctccttgaatgggaatgagtcatccatgaagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgatcctcgtcatcaggcttctaatgatgccatgaacagcatactttcctcccaggctggtggagctaatgcaaattccatgtttcctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72097" stop="73164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72397" g_stop="72864" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E479287" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72397" e_stop="72864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGG</genome_strand>
        <mrna_strand>CTCTGATGGATGATCTATTTGGAGACAATTCGGGCAGCAGCTTTAGTTCCGGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACACCAGTACTGAGAAGGCGCCTGAAGCTGATCTCTTTTCTGGAATGACAGTTGACAAATCAGATGCTACTGAAATCCATTTGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTCCCAGTGTTGAAGTTCCTCAGGAACCCAATAATTCTAGAAAGGATGTTCCTGATTTGATGAATAGTCTCTCCTTGAATGGGAATGAGTCATCCATGAAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGATCCTCGTCATCAGGCTTCTAATGATGCCATGAACAGCATACTTTCCTCCCAGGCTGGTGGAGCTAATGCAAATTCCATGTTTCCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408824" ref_strand="+" ref_description="SGN-E408824 [PPI-12-E24]">
      <seq>gcgcctgaagctgatctcttttctggaatgacagttgacaaatcagatgctactgaaatccatttggtgaataatagaaatggacctgaactgtttgatatctttggtcccagtgttgaagttcctcaggaacccaataattctagaaaggatgttcctgatttgatgaatagtctctccttgaatgggaatgagtcatccatgaagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgatcctcgtcatcaggcttctaatgatgccatgaacagcatactttcctcccaggctggtggagctaatgcaaattccatgtttcctttgggtgctatgcagtataacttgcttcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttaccagcaattagggagcatgcacccatccactagtgctagtcatgctgctgattctgcggaagtttatggttcagctctccccgatatcttcaatgctagcatttctaatcaaactcctacttccttgatgaacacttcgaagaaagaagataccaaggcatttgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72210" stop="74741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72510" g_stop="73166" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74441" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="702" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E408824" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72510" e_stop="73166"/>
          <exon e_start="74397" e_stop="74441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATG</genome_strand>
        <mrna_strand>GCGCCTGAAGCTGATCTCTTTTCTGGAATGACAGTTGACAAATCAGATGCTACTGAAATCCATTTGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTCCCAGTGTTGAAGTTCCTCAGGAACCCAATAATTCTAGAAAGGATGTTCCTGATTTGATGAATAGTCTCTCCTTGAATGGGAATGAGTCATCCATGAAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGATCCTCGTCATCAGGCTTCTAATGATGCCATGAACAGCATACTTTCCTCCCAGGCTGGTGGAGCTAATGCAAATTCCATGTTTCCTTTGGGTGCTATGCAGTATAACTTGCTTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTACCAGCAATTAGGGAGCATGCACCCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCGGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAATCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACCAAGGCATTTGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426206" ref_strand="-" ref_description="SGN-E426206 [STM-46-O5]">
      <seq>gaatgacagttgacaaatcagatgctactgaaatccattcggtgaataatagaaatggacctgaactgtttgatatctttggtcccagtgttgaagttcctcaggaacccaataattctagaaaggatgttcctgatttgatgaatagtctctccttgaatgggaatgagtcatccatgaagcagaatggcagctcaggggcaaccccntatcagaatatatttcaagagcccactatggatcctcgtcatcaggcttctaatgatgccatgaacagcatactttcctcccaggctggtggagctaatgcaaattccatgtttcctttgggtgctatgcagtataacttgcttcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttaccagcaattagggagcatgcacccatccactagtgctagtcatgctgctgattctgtggaagtttatggttcagctctccccgatatcttcaatgctagcatttctaatcaaactcctacttccttgatgaacacttcgaagaaagaagataccaaggcatttgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaaccagaatacactgcttataagatgtaatagctatacacaatttgaagcatgaatttaatctgtaaagttcctttagaagcagtgctgtcagtgtgaaaagaccaactagatgtatcttttctgtccaaaaacaattagttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72235" stop="74907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72535" g_stop="73166" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74566" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="802" r_length="170" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E426206" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426206" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72535" e_stop="73166"/>
          <exon e_start="74397" e_stop="74566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACT</genome_strand>
        <mrna_strand>GAATGACAGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTCCCAGTGTTGAAGTTCCTCAGGAACCCAATAATTCTAGAAAGGATGTTCCTGATTTGATGAATAGTCTCTCCTTGAATGGGAATGAGTCATCCATGAAGCAGAATGGCAGCTCAGGGGCAACCCCNTATCAGAATATATTTCAAGAGCCCACTATGGATCCTCGTCATCAGGCTTCTAATGATGCCATGAACAGCATACTTTCCTCCCAGGCTGGTGGAGCTAATGCAAATTCCATGTTTCCTTTGGGTGCTATGCAGTATAACTTGCTTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTACCAGCAATTAGGGAGCATGCACCCATCCACTAGTGCTAGTCATGCTGCTGATTCTGTGGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAATCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACCAAGGCATTTGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAACCAGAATACACTGCTTATAAGATGTAATAGCTATACACAATTTGAAGCATGAATTTAATCTGTAAAGTTCCTTTAGAAGCAGTGCTGTCAGTGTGAAAAGACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347333" ref_strand="+" ref_description="SGN-E347333 [cTOF-33-F1]">
      <seq>tgtttgatatctttggttccagtgttgaagttcctcgggagcccaataattctagaaaggatgttcctgatttaatgaatagtctctctttgaatgggaatgagtcatccatggagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgacccttgtcatcacgcttctaatgatgtcatgaatagcatactttcctcccaggctggtggagttaatgcaaatcccatgtttcctttgggttctatgcagtataacttgcctcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattagggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72301" stop="73478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72601" g_stop="73166" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E347333" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72601" e_stop="73166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCG</genome_strand>
        <mrna_strand>TGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614819" ref_strand="+" ref_description="SGN-E614819 [64611]">
      <seq>ggcttctaatgatgccatgaacagcatactttcctcccaggctggtggagctaatgcaaattccatgttgtcctttgggtgctatgcagtataacttgcctcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttaccagcaattagggagcatgcacccatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaaccaaactcctacttccttgatgaacacttcgaagaaagaagataccaaggcatttgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaaccagaatacactgcttataagatgtaatagctatacacaatttgaagcatgaatttaatctgtaaagttcctttagcaagcagtgctgtcagtgtgaaaagaccaactattttttttcttttctgtccaataatgagtattctgcctcgttgagaattagctttaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72489" stop="74902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72788" g_stop="73166" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74603" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="585" r_length="205" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E614819" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72788" e_stop="73166"/>
          <exon e_start="74397" e_stop="74603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTT-TCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTA-AGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTA</genome_strand>
        <mrna_strand>GGCTTCTAATGATGCCATGAACAGCATACTTTCCTCCCAGGCTGGTGGAGCTAATGCAAATTCCATGTTGTCCTTTGGGTGCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTACCAGCAATTAGGGAGCATGCACCCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAACCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACCAAGGCATTTGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAACCAGAATACACTGCTTATAAGATGTAATAGCTATACACAATTTGAAGCATGAATTTAATCTGTAAAGTTCCTTTAGCAAGCAGTGCTGTCAGTGTGAAAAGACCAACTA--TTTTTT-TTCTTTTCTGTCCAATAATGAGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542715" ref_strand="+" ref_description="SGN-E542715 [TUS-64-C14](-)">
      <seq>aatgatgtcatgaatagcatactttcctcccaggctggtggagttaatgcaaatcccatgtttcctttgggttctatgcagtataacttgcctcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattagggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaatttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactattttttttcttcttttctgcccaataatgagtattagctttacctgatgaacaaatgtttggatgtcattgccttcggaaatggagtgctgcaagggttttagaggtgttgtattctgatattacgataattattggatgacgttctttggtgtctctcatgttattcttttattcccatctctgttgtaaaactaaaactctataatatgagaaatatggcaaattatgacaagaaataaatgaaaggtaaattgtgatttattttttgaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72495" stop="75139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72795" g_stop="73166" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74836" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="812" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="814" polyA_stop="828"/>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E542715" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72795" e_stop="73166"/>
          <exon e_start="74397" e_stop="74836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTT</genome_strand>
        <mrna_strand>AATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357602" ref_strand="+" ref_description="SGN-E357602 [cTOS-24-A9]">
      <seq>tataacttgcctcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattagggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaatttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactattttttttcttcttttctgcccaataatgagtattagctttacctgatgaacaaatgtttggatgtcattgccttcggaaatggagtgctgcaagggttttagaggtgttgtattctgatattacgataattattggatgacgttctttggggtctctcatgttattcttttattcccatctctgntgtaaaactaaaactctataatatgagaaatatgggcaattatgacnagaaataaatgaaanggtaattgtgaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72576" stop="75130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72876" g_stop="73166" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74815" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="710" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E357602" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72876" e_stop="73166"/>
          <exon e_start="74397" e_stop="74815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAG</genome_strand>
        <mrna_strand>TATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGGGTCTCTCATGTTATTCTTTTATTCCCATCTCTGNTGTAAAACTAAAACTCTATAATATGAGAAATATGGGCAATTATGACNAGAAATAAATGAAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369411" ref_strand="+" ref_description="SGN-E369411 [TUS-23-I1]">
      <seq>ctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattagggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaatttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactattttttttcttcttttctgcccaataatgagtattagctttacctgatgaacaaatgtttggatgtcattgccttcggaaatggagtgctgcaagggttttagaggtgttgaaaaaaaaaaaaaaaaaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72589" stop="74980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72889" g_stop="73166" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74672" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="554" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="591"/>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E369411" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72889" e_stop="73166"/>
          <exon e_start="74397" e_stop="74672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAG</genome_strand>
        <mrna_strand>CTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243497" ref_strand="+" ref_description="SGN-E243497 [cLED-34-P19]">
      <seq>ctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattagggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaatttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactatgttttttcttcttttctgcccaataatgagtattagctntacctgatgaacaaatgtttggatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72589" stop="74935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72889" g_stop="73166" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74635" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="517" r_length="239" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E243497" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72889" e_stop="73166"/>
          <exon e_start="74397" e_stop="74635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCA</genome_strand>
        <mrna_strand>CTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATGTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTNTACCTGATGAACAAATGTTTGGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288452" ref_strand="+" ref_description="SGN-E288452 [cLES-16-N2]">
      <seq>tcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattagggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaatttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactattttttttcttcttttctgcccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72620" stop="74894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72920" g_stop="73166" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74599" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="450" r_length="203" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E288452" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72920" e_stop="73166"/>
          <exon e_start="74397" e_stop="74599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGT</genome_strand>
        <mrna_strand>TCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350620" ref_strand="+" ref_description="SGN-E350620 [cTOS-5-L8]">
      <seq>tcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaatttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactattttttttcttcttttctgcccaataatgagtattagctttacctgatgaacaaatgtttggatgtcattgccttcggaaatggagtgctgcaagggttttagaggtgttgtattctgatattacgataattattggatgacgttctttggtgtctctcatgttattcttttattcccatctctgttgtaaaactaaaactctataatatgagaaatatggcaaattatgacaagaaataaatgaaaggtaaattgtgatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72762" stop="75130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73062" g_stop="73166" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74829" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="538" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="550"/>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E350620" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73062" e_stop="73166"/>
          <exon e_start="74397" e_stop="74829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTT</genome_strand>
        <mrna_strand>TCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302694" ref_strand="+" ref_description="SGN-E302694 [cLEY-1-I11](-)">
      <seq>tcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaattttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactattttttttcttcttttctgcccaataatgagtattagctttacctgatgaacaaatgtttggatgtcattgccttcggaaatggagtgctgcaagggttttagaggtgttgtattctgatattacgataattattggatgacgttctttggtgtctctcatgttattcttttattcccatctctgttgtaaaactaaaactctataatatgagaaatatggcaaattatgacaagaaataaatgaaaggtaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="72781" stop="75122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73081" g_stop="73166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74822" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="513" r_length="427" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E302694" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73081" e_stop="73166"/>
          <exon e_start="74397" e_stop="74822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAA-TTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATT</genome_strand>
        <mrna_strand>TCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320889" ref_strand="+" ref_description="SGN-E320889 [cTOB-27-N12]">
      <seq>tctaatgttgagattgatttgtcacttccaatttcaacttatgtgcgaggtattcttggttttaattctattaaccgtgatgattttgaagaatatcttaatcaatatttagaaatattggaaatcaaagatggcaacaaagattcattaggatggtggagtaggcgaaccgatgcatttccaactttgagcaaaatggttcgtgatgttctatctattcaagcttcatcagttgcatcagaggctgctctcagtgcggcaagatttcaaattagttatcatagacattcattggcggaagacagtttggaaacaacagttttatttagagactggtccaatgtcggaaggaggaataacaatttgccaaagttaagtaaaaaacaagcaagttggatcaaaacactaattgaatgcagtgattatgaattagagacacaagaatttctagcaagtttgctaacaccggaggatatcaccatcgatatgatgcgacaattagataaattttaaaggagaaaacaaatatttttagattacattcgagaactaattgaaacagaacccttctagaaggtggctgcgtannatttagtactcatctaatatctgtaacaatattagttttacgtataaaacttattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="77699" stop="76448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77399" g_stop="76748" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E320889" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77399" e_stop="76748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGTTGAGATTAATTTTTCACTTCCAATTTCAACTTATATGTGAGGTATTCTTGGTCTTAATTTTATTAACCGTGATGATTTTGAAGAATATTTTAATCAATCTTTAGAAATATTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGTGAACCGATGCATTTCCAACTTTGATCTAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGTGGCTGCTTTCAGTGCGGCAAGGTTTCAAATTGGTTATCATAGACATTCATTGGCGGAAGACAGTTTTGAAACAACAATTTTATTTAGAGACTGATGCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTCAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAACTGAATGCAGTGATGATGAATTAGAGGCACAAGTATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGTGACAATTAAAATTAAATTTTAAAGGAGAAAACAAATATTTTTAGATTATATTCGAGAACTAATTGAAAGAGAACTCTTCCTAGAAGGTGGCTATGTAATATTAGTTACTCATCTAATATATGTAACAAATATTATTATTACGTATGAGAACTTATTGAA</genome_strand>
        <mrna_strand>TCTAATGTTGAGATTGATTTGTCACTTCCAATTTCAACTTATGTGCGAGGTATTCTTGGTTTTAATTCTATTAACCGTGATGATTTTGAAGAATATCTTAATCAATATTTAGAAATATTGGAAATCAAAGATGGCAACAAAGATTCATTAGGATGGTGGAGTAGGCGAACCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTATCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTCTCAGTGCGGCAAGATTTCAAATTAGTTATCATAGACATTCATTGGCGGAAGACAGTTTGGAAACAACAGTTTTATTTAGAGACTGGTCCAATGTCGGAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACTAATTGAATGCAGTGATTATGAATTAGAGACACAAGAATTTCTAGCAAGTTTGCTAACACCGGAGGATATCACCATCGATATGATGCGACAATT-AGA-TAAATTTTAAAGGAGAAAACAAATATTTTTAGATTACATTCGAGAACTAATTGAAACAGAACCCTT-CTAGAAGGTGGCTGCGTANNATTTAGTACTCATCTAATATCTGTAAC-AATATTAGTTTTACGTAT-AAAACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251178" ref_strand="+" ref_description="SGN-E251178 [cLEG-10-J21]">
      <seq>tcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatcagaggctgctttcaatgcggcaaggtttcaaatcggtgatcatagacattcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="78005" stop="76804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77706" g_stop="77104" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E251178" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77706" e_stop="77104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCCAATTTCAACTTATATGTGAGGTATTCTTGGTCTTAATTTTATTAACCGTGATGATTTTGAAGAATATTTTAATCAATCTTTAGAAATATTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGTGAACCGATGCATTTCCAACTTTGATCTAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGTGGCTGCTTTCAGTGCGGCAAGGTTTCAAATTGGTTATCATAGACATTCATTGGC</genome_strand>
        <mrna_strand>TCAATTCAATTTTCTAAATATAAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAG-TTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTTTCAATGCGGCAAGGTTTCAAATCGGTGATCATAGACATTCATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262684" ref_strand="+" ref_description="SGN-E262684 [cLEG-63-K3]">
      <seq>tattatcctactatttcatccgtattaataaatatttgtgctctttcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatcagaggctgctttcagtgcggcaaggtttcaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="78051" stop="76826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77751" g_stop="77126" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E262684" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77751" e_stop="77126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATACTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCCAATTTCAACTTATATGTGAGGTATTCTTGGTCTTAATTTTATTAACCGTGATGATTTTGAAGAATATTTTAATCAATCTTTAGAAATATTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGTGAACCGATGCATTTCCAACTTTGATCTAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGTGGCTGCTTTCAGTGCGGCAAGGTTTCAAATTG</genome_strand>
        <mrna_strand>TATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCAATTTTCTAAATATAAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAG-TTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTTTCAGTGCGGCAAGGTTTCAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251179" ref_strand="+" ref_description="SGN-E251179 [cLEG-10-L21]">
      <seq>tcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="78005" stop="76861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77706" g_stop="77161" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E251179" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77706" e_stop="77161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCCAATTTCAACTTATATGTGAGGTATTCTTGGTCTTAATTTTATTAACCGTGATGATTTTGAAGAATATTTTAATCAATCTTTAGAAATATTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGTGAACCGATGCATTTCCAACTTTGATCTAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATC</genome_strand>
        <mrna_strand>TCAATTCAATTTTCTAAATATAAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAG-TTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238157" ref_strand="+" ref_description="SGN-E238157 [cLED-22-P14]">
      <seq>tggaattctctttacgaaatgctttcggttgcttataaatatagaagacccatacaaatggtttttaatgccataatgctgacccattagatagaatttgtgatgaagattgggaagaaactaaagaacgattacaatttttaagacttttttatgatgctactaccatgttttcgggaatttattatcctactatttcatccgtattaataaatatttgtgctctttcaattcgattttgtaaatataaaaaaatagataaatttagagttgcaattgaaggtatgattgaaacattttaaaaatatttttttcctattcctcaagcttttttaacggctactttacttcatcctgcttataaattacaaggtgtgcaaggccttgttgacactttttataaaaagttagaaattttaccggaagaaattttaaattgtcaagcgtgtagtctagcataaaagtagaagcaaaagttttgtatgaaaaatatagaactattgaaaattttcaaggagaagttggtcaaacatctaatgttgagattgattcgtcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="78234" stop="77071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77934" g_stop="77371" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E238157" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77934" e_stop="77371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTTTATGAAATGATTCCGGTTGCTTACATATATAGAAGACCCATACAAATGGTTTTTAATGCTCATAATGCTGACCTATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAATGAACTATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCTGGAATTTATTATACTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCC</genome_strand>
        <mrna_strand>TGGAATTCTCTTTACGAAATGCTTTCGGTTGCTTATAAATATAGAAGACCCATACAAATGGTTTTTAATGC-CATAATGCTGACCCATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAAAGAACGATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCGGGAATTTATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCGATTTTGTAAATATAAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAACATTTTAAAAATATTTTTTTCCTATTCCTCAAG-CTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGCAAGGCCTTGTTGACACTTTTTATAAAAAGTTAGAAATTTTACCGGAAGAAATTTTAAATTGTCAAGCGTGT-AGTCTAGCATAAAAGTAGAAGCAAAAGTTTTGTATGAAAAATATAGAACTATTGAAAATTTTCAAGGAGAAGTTGGTCAAACATCTAATGTTGAGATTGATTCGTCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279072" ref_strand="+" ref_description="SGN-E279072 [cLEL-4-C6](-)">
      <seq>gtagttttatatttttcagctttgcttctactgttatgctagactcaacacgtttgacaatttgaaatttcttccggtaaaatttcttaagtttcataaaatgtgtcaacaaggtcttgcaaaccttgtaatttataagcgggatgaagtaaagtagccggtaaaaaaaacttgacgaatagtaaaaaaatatttttaaaatttttcaaccataccttcaattgcaactctaaatttatctatttttttatatttacaaaattgaattgtaagagcacaaatatttattaatacggatgaaatagtaggataataaattctagaaaacatggtagtagcatcataaaaaagtcttaaaaactgtaatagttctttagtttcttcccagtcttcatcacaaattctatctaactggtcagcattataagcattaaaaaacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="77184" stop="78180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77437" g_stop="77880" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-E279072" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77437" e_stop="77880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATTTTTCATACAACAGTTTTGCTTCTACTTTTATGCTAGACT-TACACGTTTGACAATTTGAAATTTCTTTCGATAAAATTTCTAAAATTTCATAAAAAGTGTCAACAGGGCCTTGCACACCTTGTAATATATAAGCAGGATGAAGTAAAGTAGCCGTTAAAAAAAACTTGAGGAATAGGAAAGAAATATTTTTTAAAATTTTCAATCATATCTTTAATTGCAACTCTAAATTTATCTATTTTTTAATATTTACAAAATTGAATTGTAAGAGCACAAATATTTATTAATACGGATGAAATAGTAGTATAATAAATTCCAGAAAACATGGTAGTAGCATCATAAAAAAGTCTTAAAAATTGTAATAGTTCATTAGTTTCTTCCCAATCTTCATCACAAATTCTATCTAATAGGTCAGCATTATGAGCATTAAAAACCATTTG</genome_strand>
        <mrna_strand>GTAGTTTTAT-ATTTTTCAGCTTTGCTTCTACTGTTATGCTAGACTCAACACGTTTGACAATTTGAAATTTCTTCCGGTAAAATTTCTTAAGTTTCATAAAATGTGTCAACAAGGTCTTGCAAACCTTGTAATTTATAAGCGGGATGAAGTAAAGTAGCCGGTAAAAAAAACTTGACGAATAGTAAAAAAATATTTTTAAAATTTTTCAACCATACCTTCAATTGCAACTCTAAATTTATCTATTTTTTTATATTTACAAAATTGAATTGTAAGAGCACAAATATTTATTAATACGGATGAAATAGTAGGATAATAAATTCTAGAAAACATGGTAGTAGCATCATAAAAAAGTCTTAAAAACTGTAATAGTTCTTTAGTTTCTTCCCAGTCTTCATCACAAATTCTATCTAACTGGTCAGCATTATAAGCATTAAAAAACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392586" ref_strand="+" ref_description="SGN-E392586 [TUS-35-B13]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcatagtaaatagtagagtgtctattacttcggacatgggtcgtagtgttaatggaaatgatcatttaacagtaactgcacattggattgatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="79277" stop="78038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78977" g_stop="78338" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E392586" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78977" e_stop="78338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCACAAGGGCGAAGGTGAAGTATCAACGCCCT-AAACTTCTATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAATGTTGCTGTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGT-GGGGTCAAGGTGGAACGGGGGAATTAAATAGACATTTGTTATCTTGTGTACCGATTCAATATGAAGACACTAAACCATTAGCCAGTAGAAAAAAAGGAATTTCAATTAATGAATTTGATATTACCAGTAATGCATCGATAGGGGCTTCTAACATGGTTCAAGGAACATTAGATCCTTTTAACCACGTTGGTCCAATAACACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATTGTTTTTGTTTGTGGTTTGCCTCATAGTTTTTCTTCAAATCCCGGTGCTATTGAATATATTCAACAAACTTATAATCCAGATTATAGAGGCTTTTCAAGAAATACTGTTAAATCTGTTGTTTTTGAGTTTCAAGGTAAACATTGTCAATTTCTTTGATGTATATTTAGCATATTAGATAGTAGAGTGTCTATAACTTCAGACATGGGTCGTACTGTTAATGAAAATGATTATTTAACTGTTACTGCACATTGGATTGATCATA</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCTAAC--GGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAGTAAATAGTAGAGTGTCTATTACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATCATTTAACAGTAACTGCACATTGGATTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392581" ref_strand="+" ref_description="SGN-E392581 [TUS-35-B7]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcataatagatagtaaagtgtctattacttcggacatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="79277" stop="78092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78977" g_stop="78392" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E392581" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78977" e_stop="78392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCACAAGGGCGAAGGTGAAGTATCAACGCCCT-AAACTTCTATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAATGTTGCTGTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGT-GGGGTCAAGGTGGAACGGGGGAATTAAATAGACATTTGTTATCTTGTGTACCGATTCAATATGAAGACACTAAACCATTAGCCAGTAGAAAAAAAGGAATTTCAATTAATGAATTTGATATTACCAGTAATGCATCGATAGGGGCTTCTAACATGGTTCAAGGAACATTAGATCCTTTTAACCACGTTGGTCCAATAACACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATTGTTTTTGTTTGTGGTTTGCCTCATAGTTTTTCTTCAAATCCCGGTGCTATTGAATATATTCAACAAACTTATAATCCAGATTATAGAGGCTTTTCAAGAAATACTGTTAAATCTGTTGTTTTTGAGTTTCAAGGTAAACATTGTCAATTTCTTTGATGTATATTTAGCATATTAGATAGTAGAGTGTCTATAACTTCAGACATGGGTC</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCTAAC--GGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAATAGATAGTAAAGTGTCTATTACTTCGGACATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274195" ref_strand="+" ref_description="SGN-E274195 [cLEN-8-D4]">
      <seq>tcccacaagggagaaggtgaagtatccacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcatgcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctgaagcattatccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="79276" stop="78407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78976" g_stop="78706" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E274195" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78976" e_stop="78706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACAAGGGCGAAGGTGAAGTATCAACGCCCT-AAACTTCTATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAATGTTGCTGTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGT-GGGGTCAAGGTGGAACGGGGGAATTAAATAGACATTTGTTATCTTGTGTACCGATTCAATATGAAGACACTAAACCATTAGCCAGTAGAAAAAAAGGAATTTCAATTAATGAATTTGATATTACCAGTAATGCATCGATAGG</genome_strand>
        <mrna_strand>TCCCACAAGGGAGAAGGTGAAGTATCCACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCATGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTGAAGCATTATCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274025" ref_strand="+" ref_description="SGN-E274025 [cLEN-8-D3]">
      <seq>tcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="79276" stop="78416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78976" g_stop="78716" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-E274025" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78976" e_stop="78716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACAAGGGCGAAGGTGAAGTATCAACGCCCT-AAACTTCTATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAATGTTGCTGTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGT-GGGGTCAAGGTGGAACGGGGGAATTAAATAGACATTTGTTATCTTGTGTACCGATTCAATATGAAGACACTAAACCATTAGCCAGTAGAAAAAAAGGAATTTCAATTAATGAATTTGATATTACCAGTAATG</genome_strand>
        <mrna_strand>TCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTATTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>42</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="69924" PGL_stop="74836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69924" e_stop="70224"/>
            <exon e_start="70309" e_stop="70986"/>
            <exon e_start="71151" e_stop="71306"/>
            <exon e_start="72201" e_stop="73166"/>
            <exon e_start="74397" e_stop="74836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.995" e_score="0.998"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69924" e_stop="70224" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="70309" e_stop="70986" e_length="678"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71151" e_stop="71306" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="72201" e_stop="73166" e_length="966"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74397" e_stop="74836" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69924" stop="70224"/>
              <exon start="70309" stop="70857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69927" stop="70224"/>
              <exon start="70309" stop="70582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69981" stop="70224"/>
              <exon start="70309" stop="70785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69981" stop="70224"/>
              <exon start="70309" stop="70488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70027" stop="70224"/>
              <exon start="70309" stop="70687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70045" stop="70224"/>
              <exon start="70309" stop="70687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70062" stop="70224"/>
              <exon start="70309" stop="70409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70547" stop="70986"/>
              <exon start="71151" stop="71275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70582" stop="70986"/>
              <exon start="71151" stop="71306"/>
              <exon start="72201" stop="72399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70603" stop="70986"/>
              <exon start="71151" stop="71306"/>
              <exon start="72201" stop="72250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70736" stop="70986"/>
              <exon start="71151" stop="71306"/>
              <exon start="72201" stop="72351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70773" stop="70986"/>
              <exon start="71151" stop="71243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70910" stop="70986"/>
              <exon start="71151" stop="71306"/>
              <exon start="72201" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71219" stop="71306"/>
              <exon start="72201" stop="72707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72201" stop="72848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72211" stop="72824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72279" stop="73125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72397" stop="73047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72397" stop="72864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72510" stop="73166"/>
              <exon start="74397" stop="74441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72535" stop="73166"/>
              <exon start="74397" stop="74566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426206" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72601" stop="73166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72788" stop="73166"/>
              <exon start="74397" stop="74603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72795" stop="73166"/>
              <exon start="74397" stop="74836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72876" stop="73166"/>
              <exon start="74397" stop="74815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72889" stop="73166"/>
              <exon start="74397" stop="74672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72889" stop="73166"/>
              <exon start="74397" stop="74635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72920" stop="73166"/>
              <exon start="74397" stop="74599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73062" stop="73166"/>
              <exon start="74397" stop="74829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73081" stop="73166"/>
              <exon start="74397" stop="74822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG : GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG : GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAA : GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCG : GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTT</gDNA_template>
            <first_frame> E  N  N  N  I  I  I  K  L  W  R  S  V  G  L  G  E  K  P  *  K  *  I  W  R  S  D  L  K  L  L  N  G  F  K  Q  E  G  G  R  V  V  L  E  V  T  D  D  R  W  S  D  L  *  *  R  *  S  D  A  C  L  Q  I  G  G  D  L  *  V  A  *  I  L  T  F  L  Y  C  *  R  S  I  *  I  H  P  Q  T  S  P  T  Q  I  P  N  C  Q  A  K   : G  S  Q  S  D  Q  I  C  C  R  K  I  L  S  R  I  H  K  G  D  A  K  K  F  S  R  Y  T  P  V  N  S  L  Q  R  S  T  R  P  F  E  G  *  C  T  Q  *  S  S  P  *  N  S  A  G  S  I  I  C  S  I  F  F  T  R  H  *  T  S  H  R  K  S  K  S  W  W  Q  N  T  R  L  W  *  Y  Q  L  *  N  S  *  *  *  E  V  F  P  Q  *  R  C  W  C  Y  N  *  T  R  T  *  Y  S  Y  T  I  S  S  S  Q  K  E  *  Y  W  N  L  Y  K  S  K  S  S  E  L  I  D  N  S  T  *  H  F  S  Q  S  Y  F  S  L  F  N  K  S  C  F  C  N  L  D  S  H  *  N  N  N  Q  A  T  F  C  *  K  D  P  R  R  Q  V  I  R  N  Y  C  N  L  R  W  S  S  S  A  A  N  S  G  C  T  S  G  L  P  S  R  G  F  K  I  R  C  L  G  F  D  S  C  P  *  V  K  A  A  I  T  F  V  A   : G  S  C  E  S  N  L  C  P  R  G  H  L  E  E  K  R  *  C  S  L  W  Y  Y  G  I  L  F  H  *  K  *  R  C  C  G  K  M  L  *  I  S  P  S  I  I  K  R  K  S  K  Q   : S  L  K  S  S  E  *  W  T  N  S  *  C  C  G  S  C  R  *  V  S  K  C  L  *  P  C  C  P  D  A  *  L  D  R  H  R  Q  F  *  L  S  V  W  N  R  *  F  N  K  Y  A  E  *  *  R  N  K  D  C  I  H  L  C  H  P  S  D  G  *  S  I  W  R  Q  I  G  Q  Q  L  *  F  Q  P  K  E  K  *  *  *  P  L  C  *  C  F  F  S  H  Q  *  *  E  S  A  *  S  *  S  L  F  W  N  D  G  *  Q  I  R  C  Y  *  N  P  F  G  E  *  *  K  W  T  *  T  V  *  Y  L  W  F  Q  C  *  S  S  S  G  A  Q  *  F  *  K  G  C  S  *  F  N  E  *  S  L  F  E  W  E  *  V  I  H  G  A  E  W  Q  L  R  G  N  P  L  S  E  Y  I  S  R  A  H  Y  *  P  L  S  S  R  F  *  *  C  H  E  *  H  T  F  L  P  G  W  W  S  *  C  K  S  H  V  S  F  G  F  Y  A  V  *  L  A  S  W  L  R  V  E  S  I  I  C  S  S  G  S  K  L  *  C  Y  G  K  H  F  C  S  A  A  T  P  C  N  A  F  Q  L  S  A  I  R  E  H  A  L  I  H  *  C  *  S  C  C  *  F  C  *  S  L  W  F  S  S  P  R  Y  L  Q  C  *  H  F  *  A  N  S  Y  F  L  D  E  H  F  E  E  R  R  Y  K  G  I  R  F  Y  L   : G  S  F  G  C  S  S  *  S  K  E  G  D  L  N  G  N  H  S  K  Q  I  R  I  H  C  L  *  Y  V  V  A  I  H  N  L  K  H  E  F  N  L  *  S  S  F  K  S  S  A  V  S  V  K  R  P  T  I  F  F  L  L  F  C  P  I  M  S  I  S  F  T  *  *  T  N  V  W  M  S  L  P  S  E  M  E  C  C  K  G  F  R  G  V  V  F  *  Y  Y  D  N  Y  W  M  T  F  F  G  V  S  H  V  I  L  L  F  P  S  L  L  *  N  *  N  S  I  I  *  E  I  W  Q  I  M  T  R  N  K  *  K  V  N  C  D  L  F  F </first_frame>
            <second_frame>  R  I  I  I  *  *  *  N  C  G  G  R  L  G  W  V  K  N  P  K  S  R  F  G  D  Q  I  *  N  C  *  M  D  S  S  R  R  A  V  E  S  Y  W  R  S  R  M  I  D  G  A  T  S  D  E  D  K  V  T  P  V  Y  K  L  E  E  I  C  E  L  L  R  S  S  H  S  S  I  V  K  E  V  S  E  F  I  L  K  R  L  Q  H  K  S  P  I  V  K  Q  K  :  A  L  R  V  I  K  Y  A  V  G  K  S  C  P  E  F  T  R  E  M  Q  R  N  S  V  A  I  R  Q  L  I  H  Y  K  G  Q  P  D  P  L  K  A  D  A  L  N  K  A  V  R  E  T  A  Q  E  A  L  S  A  L  F  S  S  Q  D  T  K  P  P  T  E  N  L  N  L  G  G  R  I  Q  G  F  G  N  T  S  Y  E  I  H  D  D  K  R  S  F  L  S  D  V  V  G  A  T  I  K  Q  G  L  N  T  L  T  Q  S  P  P  L  K  K  N  D  T  G  T  Y  T  S  P  N  L  Q  S  S  L  T  T  Q  P  D  T  S  H  N  H  T  S  R  F  S  T  N  P  A  S  A  T  W  T  H  T  E  T  T  T  K  P  H  S  A  E  K  T  R  E  D  R  L  L  E  T  I  A  T  S  G  G  V  R  L  Q  P  T  R  D  A  L  Q  V  F  L  L  E  A  S  K  L  D  A  L  A  L  T  H  A  L  E  S  K  L  Q  S  P  S  W  Q  :  V  R  V  K  A  I  C  V  L  E  A  I  L  R  K  K  D  D  A  H  F  G  T  M  A  S  Y  F  T  E  N  R  D  V  V  V  K  C  Y  E  S  P  Q  A  S  L  R  E  K  A  N  K  :  V  L  S  L  L  N  D  G  Q  T  A  D  A  V  A  H  V  D  R  S  A  N  A  C  N  P  V  V  Q  M  P  D  L  I  D  T  D  N  S  D  Y  L  F  G  T  D  N  L  T  N  M  Q  S  S  E  G  I  K  I  A  S  T  S  A  T  P  L  M  D  D  L  F  G  D  K  S  G  S  S  F  S  S  S  Q  K  K  N  D  D  D  P  F  A  D  V  S  F  H  I  S  N  E  K  A  P  E  A  D  L  F  S  G  M  T  V  D  K  S  D  A  T  E  I  H  S  V  N  N  R  N  G  P  E  L  F  D  I  F  G  S  S  V  E  V  P  R  E  P  N  N  S  R  K  D  V  P  D  L  M  N  S  L  S  L  N  G  N  E  S  S  M  E  Q  N  G  S  S  G  A  T  P  Y  Q  N  I  F  Q  E  P  T  I  D  P  C  H  H  A  S  N  D  V  M  N  S  I  L  S  S  Q  A  G  G  V  N  A  N  P  M  F  P  L  G  S  M  Q  Y  N  L  P  P  G  F  V  L  N  P  S  F  A  P  Q  A  L  N  Y  N  A  M  G  N  I  F  A  Q  Q  Q  L  L  A  T  L  S  S  Y  Q  Q  L  G  S  M  H  S  S  T  S  A  S  H  A  A  D  S  A  E  V  Y  G  S  A  L  P  D  I  F  N  A  S  I  S  K  Q  T  P  T  S  L  M  N  T  S  K  K  E  G  T  K  A  F  D  F  I  S  :  D  H  L  A  A  A  R  D  P  K  R  V  I  *  M  V  I  I  Q  S  K  *  E  Y  I  A  Y  N  M  *  *  L  Y  T  I  *  S  T  N  L  I  C  K  V  P  L  R  A  V  L  S  V  *  K  D  Q  L  F  F  F  F  F  S  A  Q  *  *  V  L  A  L  P  D  E  Q  M  F  G  C  H  C  L  R  K  W  S  A  A  R  V  L  E  V  L  Y  S  D  I  T  I  I  I  G  *  R  S  L  V  S  L  M  L  F  F  Y  S  H  L  C  C  K  T  K  T  L  *  Y  E  K  Y  G  K  L  *  Q  E  I  N  E  R  *  I  V  I  Y  F   </second_frame>
            <third_frame>   E  *  *  Y  N  N  K  I  V  E  V  G  W  V  G  *  K  T  L  K  V  D  L  E  I  R  S  E  I  V  E  W  I  Q  A  G  G  R  *  S  R  I  G  G  H  G  *  S  M  E  R  P  L  M  K  I  K  *  R  L  F  T  N  W  R  R  F  V  S  C  L  D  P  H  I  P  L  L  L  K  K  Y  L  N  S  S  S  N  V  S  N  T  N  P  Q  L  S  S  K  R :   L  S  E  *  S  N  M  L  S  E  N  L  V  Q  N  S  Q  G  R  C  K  E  I  Q  S  L  Y  A  S  *  F  T  T  K  V  N  P  T  L  *  R  L  M  H  S  I  K  Q  S  V  K  Q  R  R  K  H  Y  L  L  Y  F  L  H  K  T  L  N  L  P  Q  K  I  *  I  L  V  A  E  Y  K  A  L  V  I  P  V  M  K  F  M  M  I  R  G  L  S  S  V  T  L  L  V  L  Q  L  N  K  D  L  I  L  L  H  N  L  L  L  S  K  R  M  I  L  E  L  I  Q  V  Q  I  F  R  A  H  *  Q  L  N  L  T  L  L  T  I  I  L  L  A  F  Q  Q  I  L  L  L  Q  L  G  L  T  L  K  Q  Q  P  S  H  I  L  L  K  R  P  E  K  T  G  Y  *  K  L  L  Q  P  P  V  E  F  V  C  S  Q  L  G  M  H  F  R  S  S  F  S  R  L  Q  N  *  M  P  W  L  *  L  M  P  L  S  Q  S  C  N  H  L  R  G  R :   F  V  *  K  Q  S  V  S  S  R  P  S  *  G  K  K  M  M  L  T  L  V  L  W  H  L  I  S  L  K  I  E  M  L  W  *  N  A  M  N  L  P  K  H  H  *  E  K  K  Q  T  K :   S  *  V  F  *  M  M  D  K  Q  L  M  L  W  L  M  *  I  G  Q  Q  M  L  V  T  L  L  S  R  C  L  T  *  *  T  Q  T  I  L  I  I  C  L  E  Q  I  I  *  Q  I  C  R  V  V  K  E  *  R  L  H  P  P  L  P  P  L  *  W  M  I  Y  L  E  T  N  R  A  A  A  L  V  P  A  K  R  K  M  M  M  T  P  L  L  M  F  L  F  T  S  V  M  R  K  R  L  K  L  I  S  F  L  E  *  R  L  T  N  Q  M  L  L  K  S  I  R  *  I  I  E  M  D  L  N  C  L  I  S  L  V  P  V  L  K  F  L  G  S  P  I  I  L  E  R  M  F  L  I  *  *  I  V  S  L  *  M  G  M  S  H  P  W  S  R  M  A  A  Q  G  Q  P  P  I  R  I  Y  F  K  S  P  L  L  T  L  V  I  T  L  L  M  M  S  *  I  A  Y  F  P  P  R  L  V  E  L  M  Q  I  P  C  F  L  W  V  L  C  S  I  T  C  L  L  A  S  C  *  I  H  H  L  L  L  R  L  *  T  I  M  L  W  E  T  F  L  L  S  S  N  S  L  Q  R  F  P  V  I  S  N  *  G  A  C  T  H  P  L  V  L  V  M  L  L  I  L  L  K  F  M  V  Q  L  S  P  I  S  S  M  L  A  F  L  S  K  L  L  L  P  *  *  T  L  R  R  K  K  V  Q  R  H  S  I  L  S  R :   I  I  W  L  Q  L  V  I  Q  R  G  *  F  E  W  *  S  F  K  A  N  K  N  T  L  L  I  I  C  S  S  Y  T  Q  F  E  A  R  I  *  S  V  K  F  L  *  E  Q  C  C  Q  C  E  K  T  N  Y  F  F  S  S  F  L  P  N  N  E  Y  *  L  Y  L  M  N  K  C  L  D  V  I  A  F  G  N  G  V  L  Q  G  F  *  R  C  C  I  L  I  L  R  *  L  L  D  D  V  L  W  C  L  S  C  Y  S  F  I  P  I  S  V  V  K  L  K  L  Y  N  M  R  N  M  A  N  Y  D  K  K  *  M  K  G  K  L  *  F  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70018" stop="70224"/>
                    <exon start="70309" stop="70986"/>
                    <exon start="71151" stop="71306"/>
                    <exon start="72201" stop="73166"/>
                    <exon start="74397" stop="74438"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2046</number_coding_nucleotides>
                  <number_encoded_amino_acids>682</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHSSIVKEVSEFILKRLQHKSPIVKQKALRVIKYAVGKSCPEFTREMQRNSVAIRQLIHYKGQPDPLKADALNKAVRETAQEALSALFSSQDTKPPTENLNLGGRIQGFGNTSYEIHDDKRSFLSDVVGATIKQGLNTLTQSPPLKKNDTGTYTSPNLQSSLTTQPDTSHNHTSRFSTNPASATWTHTETTTKPHSAEKTREDRLLETIATSGGVRLQPTRDALQVFLLEASKLDALALTHALESKLQSPSWQVRVKAICVLEAILRKKDDAHFGTMASYFTENRDVVVKCYESPQASLREKANKVLSLLNDGQTADAVAHVDRSANACNPVVQMPDLIDTDNSDYLFGTDNLTNMQSSEGIKIASTSATPLMDDLFGDKSGSSFSSSQKKNDDDPFADVSFHISNEKAPEADLFSGMTVDKSDATEIHSVNNRNGPELFDIFGSSVEVPREPNNSRKDVPDLMNSLSLNGNESSMEQNGSSGATPYQNIFQEPTIDPCHHASNDVMNSILSSQAGGVNANPMFPLGSMQYNLPPGFVLNPSFAPQALNYNAMGNIFAQQQLLATLSSYQQLGSMHSSTSASHAADSAEVYGSALPDIFNASISKQTPTSLMNTSKKEGTKAFDFISDHLAAARDPKRVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71823" e_stop="73166"/>
            <exon e_start="74397" e_stop="74836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71823" e_stop="73166" e_length="1344"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74397" e_stop="74836" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71823" stop="72238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72096" stop="72485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72201" stop="72848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72211" stop="72824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72279" stop="73125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72397" stop="73047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72397" stop="72864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72510" stop="73166"/>
              <exon start="74397" stop="74441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72535" stop="73166"/>
              <exon start="74397" stop="74566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426206" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72601" stop="73166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72788" stop="73166"/>
              <exon start="74397" stop="74603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72795" stop="73166"/>
              <exon start="74397" stop="74836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72876" stop="73166"/>
              <exon start="74397" stop="74815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72889" stop="73166"/>
              <exon start="74397" stop="74672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72889" stop="73166"/>
              <exon start="74397" stop="74635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72920" stop="73166"/>
              <exon start="74397" stop="74599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73062" stop="73166"/>
              <exon start="74397" stop="74829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73081" stop="73166"/>
              <exon start="74397" stop="74822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCG : GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTT</gDNA_template>
            <first_frame> S  G  C  G  F  P  L  S  *  K  K  *  R  N  D  T  E  N  C  *  S  S  G  T  I  K  G  D  D  T  *  F  I  *  P  K  N  I  K  F  *  V  K  E  M  T  R  R  T  N  Y  L  M  I  L  H  V  M  H  H  C  D  S  D  I  R  S  I  K  V  *  M  A  G  I  *  T  S  L  L  Q  S  L  G  Y  T  S  Q  L  Q  K  E  K  E  K  N  I  *  C  A  Y  F  G  I  L  Q  Q  M  Y  D  C  I  M  Y  L  P  *  L  K  S  C  D  E  Y  G  Q  V  L  S  L  L  N  D  G  Q  T  A  D  A  V  A  H  V  D  R  S  A  N  A  C  N  P  V  V  Q  M  P  D  L  I  D  T  D  N  S  D  Y  L  F  G  T  D  N  L  T  N  M  Q  S  S  E  G  I  K  I  A  S  T  S  A  T  P  L  M  D  D  L  F  G  D  K  S  G  S  S  F  S  S  S  Q  K  K  N  D  D  D  P  F  A  D  V  S  F  H  I  S  N  E  K  A  P  E  A  D  L  F  S  G  M  T  V  D  K  S  D  A  T  E  I  H  S  V  N  N  R  N  G  P  E  L  F  D  I  F  G  S  S  V  E  V  P  R  E  P  N  N  S  R  K  D  V  P  D  L  M  N  S  L  S  L  N  G  N  E  S  S  M  E  Q  N  G  S  S  G  A  T  P  Y  Q  N  I  F  Q  E  P  T  I  D  P  C  H  H  A  S  N  D  V  M  N  S  I  L  S  S  Q  A  G  G  V  N  A  N  P  M  F  P  L  G  S  M  Q  Y  N  L  P  P  G  F  V  L  N  P  S  F  A  P  Q  A  L  N  Y  N  A  M  G  N  I  F  A  Q  Q  Q  L  L  A  T  L  S  S  Y  Q  Q  L  G  S  M  H  S  S  T  S  A  S  H  A  A  D  S  A  E  V  Y  G  S  A  L  P  D  I  F  N  A  S  I  S  K  Q  T  P  T  S  L  M  N  T  S  K  K  E  G  T  K  A  F  D  F  I  S  :  D  H  L  A  A  A  R  D  P  K  R  V  I  *  M  V  I  I  Q  S  K  *  E  Y  I  A  Y  N  M  *  *  L  Y  T  I  *  S  T  N  L  I  C  K  V  P  L  R  A  V  L  S  V  *  K  D  Q  L  F  F  F  F  F  S  A  Q  *  *  V  L  A  L  P  D  E  Q  M  F  G  C  H  C  L  R  K  W  S  A  A  R  V  L  E  V  L  Y  S  D  I  T  I  I  I  G  *  R  S  L  V  S  L  M  L  F  F  Y  S  H  L  C  C  K  T  K  T  L  *  Y  E  K  Y  G  K  L  *  Q  E  I  N  E  R  *  I  V  I  Y  F   </first_frame>
            <second_frame>  A  A  A  G  F  P  C  H  K  K  S  R  E  M  I  Q  K  T  V  N  P  V  E  Q  L  K  V  M  I  P  N  L  F  D  Q  K  I  *  N  S  R  *  K  R  *  L  G  E  Q  I  I  S  *  S  S  M  S  C  T  I  V  I  L  T  S  D  P  *  R  C  E  W  R  A  F  K  Q  V  S  C  R  V  W  V  I  H  L  S  F  R  R  K  R  K  K  T  F  N  V  H  I  L  A  S  C  N  K  C  M  I  A  L  C  I  F  P  S  *  S  H  V  M  N  M  G  R  S  *  V  F  *  M  M  D  K  Q  L  M  L  W  L  M  *  I  G  Q  Q  M  L  V  T  L  L  S  R  C  L  T  *  *  T  Q  T  I  L  I  I  C  L  E  Q  I  I  *  Q  I  C  R  V  V  K  E  *  R  L  H  P  P  L  P  P  L  *  W  M  I  Y  L  E  T  N  R  A  A  A  L  V  P  A  K  R  K  M  M  M  T  P  L  L  M  F  L  F  T  S  V  M  R  K  R  L  K  L  I  S  F  L  E  *  R  L  T  N  Q  M  L  L  K  S  I  R  *  I  I  E  M  D  L  N  C  L  I  S  L  V  P  V  L  K  F  L  G  S  P  I  I  L  E  R  M  F  L  I  *  *  I  V  S  L  *  M  G  M  S  H  P  W  S  R  M  A  A  Q  G  Q  P  P  I  R  I  Y  F  K  S  P  L  L  T  L  V  I  T  L  L  M  M  S  *  I  A  Y  F  P  P  R  L  V  E  L  M  Q  I  P  C  F  L  W  V  L  C  S  I  T  C  L  L  A  S  C  *  I  H  H  L  L  L  R  L  *  T  I  M  L  W  E  T  F  L  L  S  S  N  S  L  Q  R  F  P  V  I  S  N  *  G  A  C  T  H  P  L  V  L  V  M  L  L  I  L  L  K  F  M  V  Q  L  S  P  I  S  S  M  L  A  F  L  S  K  L  L  L  P  *  *  T  L  R  R  K  K  V  Q  R  H  S  I  L  S  R :   I  I  W  L  Q  L  V  I  Q  R  G  *  F  E  W  *  S  F  K  A  N  K  N  T  L  L  I  I  C  S  S  Y  T  Q  F  E  A  R  I  *  S  V  K  F  L  *  E  Q  C  C  Q  C  E  K  T  N  Y  F  F  S  S  F  L  P  N  N  E  Y  *  L  Y  L  M  N  K  C  L  D  V  I  A  F  G  N  G  V  L  Q  G  F  *  R  C  C  I  L  I  L  R  *  L  L  D  D  V  L  W  C  L  S  C  Y  S  F  I  P  I  S  V  V  K  L  K  L  Y  N  M  R  N  M  A  N  Y  D  K  K  *  M  K  G  K  L  *  F  I  F  </second_frame>
            <third_frame>   R  L  R  V  S  L  V  I  K  K  V  E  K  *  Y  R  K  L  L  I  Q  W  N  N  *  R  *  *  Y  L  I  Y  L  T  K  K  Y  K  I  L  G  K  R  D  D  *  E  N  K  L  S  H  D  P  P  C  H  A  P  L  *  F  *  H  Q  I  H  K  G  V  N  G  G  H  L  N  K  S  L  A  E  F  G  L  Y  I  S  A  S  E  G  K  G  K  K  H  L  M  C  I  F  W  H  L  A  T  N  V  *  L  H  Y  V  S  S  L  V  E  V  M  *  *  I  W  A  G  L  K  S  S  E  *  W  T  N  S  *  C  C  G  S  C  R  *  V  S  K  C  L  *  P  C  C  P  D  A  *  L  D  R  H  R  Q  F  *  L  S  V  W  N  R  *  F  N  K  Y  A  E  *  *  R  N  K  D  C  I  H  L  C  H  P  S  D  G  *  S  I  W  R  Q  I  G  Q  Q  L  *  F  Q  P  K  E  K  *  *  *  P  L  C  *  C  F  F  S  H  Q  *  *  E  S  A  *  S  *  S  L  F  W  N  D  G  *  Q  I  R  C  Y  *  N  P  F  G  E  *  *  K  W  T  *  T  V  *  Y  L  W  F  Q  C  *  S  S  S  G  A  Q  *  F  *  K  G  C  S  *  F  N  E  *  S  L  F  E  W  E  *  V  I  H  G  A  E  W  Q  L  R  G  N  P  L  S  E  Y  I  S  R  A  H  Y  *  P  L  S  S  R  F  *  *  C  H  E  *  H  T  F  L  P  G  W  W  S  *  C  K  S  H  V  S  F  G  F  Y  A  V  *  L  A  S  W  L  R  V  E  S  I  I  C  S  S  G  S  K  L  *  C  Y  G  K  H  F  C  S  A  A  T  P  C  N  A  F  Q  L  S  A  I  R  E  H  A  L  I  H  *  C  *  S  C  C  *  F  C  *  S  L  W  F  S  S  P  R  Y  L  Q  C  *  H  F  *  A  N  S  Y  F  L  D  E  H  F  E  E  R  R  Y  K  G  I  R  F  Y  L   : G  S  F  G  C  S  S  *  S  K  E  G  D  L  N  G  N  H  S  K  Q  I  R  I  H  C  L  *  Y  V  V  A  I  H  N  L  K  H  E  F  N  L  *  S  S  F  K  S  S  A  V  S  V  K  R  P  T  I  F  F  L  L  F  C  P  I  M  S  I  S  F  T  *  *  T  N  V  W  M  S  L  P  S  E  M  E  C  C  K  G  F  R  G  V  V  F  *  Y  Y  D  N  Y  W  M  T  F  F  G  V  S  H  V  I  L  L  F  P  S  L  L  *  N  *  N  S  I  I  *  E  I  W  Q  I  M  T  R  N  K  *  K  V  N  C  D  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72174" stop="73166"/>
                    <exon start="74397" stop="74438"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKSCDEYGQVLSLLNDGQTADAVAHVDRSANACNPVVQMPDLIDTDNSDYLFGTDNLTNMQSSEGIKIASTSATPLMDDLFGDKSGSSFSSSQKKNDDDPFADVSFHISNEKAPEADLFSGMTVDKSDATEIHSVNNRNGPELFDIFGSSVEVPREPNNSRKDVPDLMNSLSLNGNESSMEQNGSSGATPYQNIFQEPTIDPCHHASNDVMNSILSSQAGGVNANPMFPLGSMQYNLPPGFVLNPSFAPQALNYNAMGNIFAQQQLLATLSSYQQLGSMHSSTSASHAADSAEVYGSALPDIFNASISKQTPTSLMNTSKKEGTKAFDFISDHLAAARDPKRVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="77934" PGL_stop="76748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77934" e_stop="76748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="77934" e_stop="76748" e_length="1187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77934" stop="77371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77751" stop="77126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77706" stop="77104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77706" stop="77161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77399" stop="76748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAATTCTCTTTATGAAATGATTCCGGTTGCTTACATATATAGAAGACCCATACAAATGGTTTTTAATGCTCATAATGCTGACCTATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAATGAACTATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCTGGAATTTATTATACTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCCAATTTCAACTTATATGTGAGGTATTCTTGGTCTTAATTTTATTAACCGTGATGATTTTGAAGAATATTTTAATCAATCTTTAGAAATATTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGTGAACCGATGCATTTCCAACTTTGATCTAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGTGGCTGCTTTCAGTGCGGCAAGGTTTCAAATTGGTTATCATAGACATTCATTGGCGGAAGACAGTTTTGAAACAACAATTTTATTTAGAGACTGATGCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTCAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAACTGAATGCAGTGATGATGAATTAGAGGCACAAGTATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGTGACAATTAAAATTAAATTTTAAAGGAGAAAACAAATATTTTTAGATTATATTCGAGAACTAATTGAAAGAGAACTCTTCCTAGAAGGTGGCTATGTAATATTAGTTACTCATCTAATATATGTAACAAATATTATTATTACGTATGAGAACTTATTGAA</gDNA_template>
            <first_frame> W  N  S  L  Y  E  M  I  P  V  A  Y  I  Y  R  R  P  I  Q  M  V  F  N  A  H  N  A  D  L  L  D  R  I  C  D  E  D  W  E  E  T  N  E  L  L  Q  F  L  R  L  F  Y  D  A  T  T  M  F  S  G  I  Y  Y  T  T  I  S  S  V  L  I  N  I  C  A  L  T  I  Q  F  C  K  Y  *  K  I  D  K  F  R  V  A  I  K  D  M  I  E  N  F  K  K  Y  F  F  P  I  P  Q  V  F  F  N  G  Y  F  T  S  S  C  L  Y  I  T  R  C  A  R  P  C  *  H  F  L  *  N  F  R  N  F  I  E  R  N  F  K  L  S  N  V  *  V  *  H  K  S  R  S  K  T  V  V  *  K  I  *  N  Y  G  K  F  S  R  R  S  W  S  N  F  *  C  *  D  *  F  F  T  S  N  F  N  L  Y  V  R  Y  S  W  S  *  F  Y  *  P  *  *  F  *  R  I  F  *  S  I  F  R  N  I  G  N  Q  R  W  Q  *  R  F  I  R  M  V  E  *  V  N  R  C  I  S  N  F  D  L  N  G  S  *  C  S  S  Y  S  S  F  I  S  C  I  G  G  C  F  Q  C  G  K  V  S  N  W  L  S  *  T  F  I  G  G  R  Q  F  *  N  N  N  F  I  *  R  L  M  Q  C  R  K  E  E  *  Q  F  A  K  V  K  *  K  T  S  K  L  D  Q  N  T  N  *  M  Q  *  *  *  I  R  G  T  S  I  S  S  K  F  A  N  T  G  G  Y  H  H  R  Y  D  V  T  I  K  I  K  F  *  R  R  K  Q  I  F  L  D  Y  I  R  E  L  I  E  R  E  L  F  L  E  G  G  Y  V  I  L  V  T  H  L  I  Y  V  T  N  I  I  I  T  Y  E  N  L  L   </first_frame>
            <second_frame>  G  I  L  F  M  K  *  F  R  L  L  T  Y  I  E  D  P  Y  K  W  F  L  M  L  I  M  L  T  Y  *  I  E  F  V  M  K  I  G  K  K  L  M  N  Y  Y  N  F  *  D  F  F  M  M  L  L  P  C  F  L  E  F  I  I  L  L  F  H  P  Y  *  *  I  F  V  L  L  Q  F  N  F  V  N  I  K  K  *  I  N  L  E  L  Q  L  K  I  *  L  K  I  L  K  N  I  S  F  L  F  L  K  F  F  L  T  A  T  L  L  H  P  A  Y  I  L  Q  G  V  Q  G  P  V  D  T  F  Y  E  I  L  E  I  L  S  K  E  I  S  N  C  Q  T  C  K  S  S  I  K  V  E  A  K  L  L  Y  E  K  Y  R  T  T  E  N  F  Q  G  E  V  G  Q  T  S  N  V  E  I  N  F  S  L  P  I  S  T  Y  M  *  G  I  L  G  L  N  F  I  N  R  D  D  F  E  E  Y  F  N  Q  S  L  E  I  L  E  I  K  D  G  N  E  D  L  L  G  W  W  S  R  *  T  D  A  F  P  T  L  I  *  M  V  R  D  V  L  A  I  Q  A  S  S  V  A  S  V  A  A  F  S  A  A  R  F  Q  I  G  Y  H  R  H  S  L  A  E  D  S  F  E  T  T  I  L  F  R  D  *  C  N  A  E  R  R  N  N  N  L  P  K  S  S  K  K  Q  A  S  W  I  K  T  Q  T  E  C  S  D  D  E  L  E  A  Q  V  F  L  A  S  L  P  T  P  E  D  I  T  I  D  M  M  *  Q  L  K  L  N  F  K  G  E  N  K  Y  F  *  I  I  F  E  N  *  L  K  E  N  S  S  *  K  V  A  M  *  Y  *  L  L  I  *  Y  M  *  Q  I  L  L  L  R  M  R  T  Y  *  </second_frame>
            <third_frame>   E  F  S  L  *  N  D  S  G  C  L  H  I  *  K  T  H  T  N  G  F  *  C  S  *  C  *  P  I  R  *  N  L  *  *  R  L  G  R  N  *  *  T  I  T  I  F  K  T  F  L  *  C  Y  Y  H  V  F  W  N  L  L  Y  Y  Y  F  I  R  I  N  K  Y  L  C  S  Y  N  S  I  L  *  I  L  K  N  R  *  I  *  S  C  N  *  R  Y  D  *  K  F  *  K  I  F  L  S  Y  S  S  S  F  F  *  R  L  L  Y  F  I  L  L  I  Y  Y  K  V  C  K  A  L  L  T  L  F  M  K  F  *  K  F  Y  R  K  K  F  Q  I  V  K  R  V  S  L  A  *  K  *  K  Q  N  C  C  M  K  N  I  E  L  R  K  I  F  K  E  K  L  V  K  L  L  M  L  R  L  I  F  H  F  Q  F  Q  L  I  C  E  V  F  L  V  L  I  L  L  T  V  M  I  L  K  N  I  L  I  N  L  *  K  Y  W  K  S  K  M  A  M  K  I  Y  *  D  G  G  V  G  E  P  M  H  F  Q  L  *  S  K  W  F  V  M  F  *  L  F  K  L  H  Q  L  H  R  W  L  L  S  V  R  Q  G  F  K  L  V  I  I  D  I  H  W  R  K  T  V  L  K  Q  Q  F  Y  L  E  T  D  A  M  P  K  G  G  I  T  I  C  Q  S  Q  V  K  N  K  Q  V  G  S  K  H  K  L  N  A  V  M  M  N  *  R  H  K  Y  F  *  Q  V  C  Q  H  R  R  I  S  P  S  I  *  C  D  N  *  N  *  I  L  K  E  K  T  N  I  F  R  L  Y  S  R  T  N  *  K  R  T  L  P  R  R  W  L  C  N  I  S  Y  S  S  N  I  C  N  K  Y  Y  Y  Y  V  *  E  L  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77645" stop="77352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKILKNISFLFLKFFLTATLLHPAYILQGVQGPVDTFYEILEILSKEISNCQTCKSSIKVEAKLLYEKYRTTENFQGEVGQTSNVEINFSLPISTYM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77934" stop="77683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNSLYEMIPVAYIYRRPIQMVFNAHNADLLDRICDEDWEETNELLQFLRLFYDATTMFSGIYYTTISSVLINICALTIQFCKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77185" stop="76967"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKLHQLHRWLLSVRQGFKLVIIDIHWRKTVLKQQFYLETDAMPKGGITICQSQVKNKQVGSKHKLNAVMMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="77437" PGL_stop="77880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77437" e_stop="77880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="77437" e_stop="77880" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77437" stop="77880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATATTTTTCATACAACAGTTTTGCTTCTACTTTTATGCTAGACTTACACGTTTGACAATTTGAAATTTCTTTCGATAAAATTTCTAAAATTTCATAAAAAGTGTCAACAGGGCCTTGCACACCTTGTAATATATAAGCAGGATGAAGTAAAGTAGCCGTTAAAAAAAACTTGAGGAATAGGAAAGAAATATTTTTTAAAATTTTCAATCATATCTTTAATTGCAACTCTAAATTTATCTATTTTTTAATATTTACAAAATTGAATTGTAAGAGCACAAATATTTATTAATACGGATGAAATAGTAGTATAATAAATTCCAGAAAACATGGTAGTAGCATCATAAAAAAGTCTTAAAAATTGTAATAGTTCATTAGTTTCTTCCCAATCTTCATCACAAATTCTATCTAATAGGTCAGCATTATGAGCATTAAAAACCATTTG</gDNA_template>
            <first_frame> L  Y  F  S  Y  N  S  F  A  S  T  F  M  L  D  L  H  V  *  Q  F  E  I  S  F  D  K  I  S  K  I  S  *  K  V  S  T  G  P  C  T  P  C  N  I  *  A  G  *  S  K  V  A  V  K  K  N  L  R  N  R  K  E  I  F  F  K  I  F  N  H  I  F  N  C  N  S  K  F  I  Y  F  L  I  F  T  K  L  N  C  K  S  T  N  I  Y  *  Y  G  *  N  S  S  I  I  N  S  R  K  H  G  S  S  I  I  K  K  S  *  K  L  *  *  F  I  S  F  F  P  I  F  I  T  N  S  I  *  *  V  S  I  M  S  I  K  N  H  L </first_frame>
            <second_frame>  Y  I  F  H  T  T  V  L  L  L  L  L  C  *  T  Y  T  F  D  N  L  K  F  L  S  I  K  F  L  K  F  H  K  K  C  Q  Q  G  L  A  H  L  V  I  Y  K  Q  D  E  V  K  *  P  L  K  K  T  *  G  I  G  K  K  Y  F  L  K  F  S  I  I  S  L  I  A  T  L  N  L  S  I  F  *  Y  L  Q  N  *  I  V  R  A  Q  I  F  I  N  T  D  E  I  V  V  *  *  I  P  E  N  M  V  V  A  S  *  K  S  L  K  N  C  N  S  S  L  V  S  S  Q  S  S  S  Q  I  L  S  N  R  S  A  L  *  A  L  K  T  I   </second_frame>
            <third_frame>   I  F  F  I  Q  Q  F  C  F  Y  F  Y  A  R  L  T  R  L  T  I  *  N  F  F  R  *  N  F  *  N  F  I  K  S  V  N  R  A  L  H  T  L  *  Y  I  S  R  M  K  *  S  S  R  *  K  K  L  E  E  *  E  R  N  I  F  *  N  F  Q  S  Y  L  *  L  Q  L  *  I  Y  L  F  F  N  I  Y  K  I  E  L  *  E  H  K  Y  L  L  I  R  M  K  *  *  Y  N  K  F  Q  K  T  W  *  *  H  H  K  K  V  L  K  I  V  I  V  H  *  F  L  P  N  L  H  H  K  F  Y  L  I  G  Q  H  Y  E  H  *  K  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0006E18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="78977" PGL_stop="78338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78977" e_stop="78338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="78977" e_stop="78338" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78977" stop="78338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78977" stop="78392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78976" stop="78706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78976" stop="78716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCCACAAGGGCGAAGGTGAAGTATCAACGCCCTAAACTTCTATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAATGTTGCTGTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGTCAAGGTGGAACGGGGGAATTAAATAGACATTTGTTATCTTGTGTACCGATTCAATATGAAGACACTAAACCATTAGCCAGTAGAAAAAAAGGAATTTCAATTAATGAATTTGATATTACCAGTAATGCATCGATAGGGGCTTCTAACATGGTTCAAGGAACATTAGATCCTTTTAACCACGTTGGTCCAATAACACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATTGTTTTTGTTTGTGGTTTGCCTCATAGTTTTTCTTCAAATCCCGGTGCTATTGAATATATTCAACAAACTTATAATCCAGATTATAGAGGCTTTTCAAGAAATACTGTTAAATCTGTTGTTTTTGAGTTTCAAGGTAAACATTGTCAATTTCTTTGATGTATATTTAGCATATTAGATAGTAGAGTGTCTATAACTTCAGACATGGGTCGTACTGTTAATGAAAATGATTATTTAACTGTTACTGCACATTGGATTGATCATA</gDNA_template>
            <first_frame> L  P  Q  G  R  R  *  S  I  N  A  L  N  F  Y  C  V  A  I  Y  D  F  R  *  R  K  *  C  C  C  L  *  *  V  *  A  T  F  *  T  *  T  R  W  G  Q  G  G  T  G  E  L  N  R  H  L  L  S  C  V  P  I  Q  Y  E  D  T  K  P  L  A  S  R  K  K  G  I  S  I  N  E  F  D  I  T  S  N  A  S  I  G  A  S  N  M  V  Q  G  T  L  D  P  F  N  H  V  G  P  I  T  Q  R  K  Y  N  K  E  L  D  R  E  N  L  A  K  I  V  F  V  C  G  L  P  H  S  F  S  S  N  P  G  A  I  E  Y  I  Q  Q  T  Y  N  P  D  Y  R  G  F  S  R  N  T  V  K  S  V  V  F  E  F  Q  G  K  H  C  Q  F  L  *  C  I  F  S  I  L  D  S  R  V  S  I  T  S  D  M  G  R  T  V  N  E  N  D  Y  L  T  V  T  A  H  W  I  D  H  </first_frame>
            <second_frame>  S  H  K  G  E  G  E  V  S  T  P  *  T  S  I  V  W  Q  F  M  T  F  D  K  E  N  N  V  A  V  C  N  K  C  K  Q  P  F  K  H  K  Q  G  G  V  K  V  E  R  G  N  *  I  D  I  C  Y  L  V  Y  R  F  N  M  K  T  L  N  H  *  P  V  E  K  K  E  F  Q  L  M  N  L  I  L  P  V  M  H  R  *  G  L  L  T  W  F  K  E  H  *  I  L  L  T  T  L  V  Q  *  H  N  V  N  I  I  R  N  *  I  G  K  I  *  L  K  L  F  L  F  V  V  C  L  I  V  F  L  Q  I  P  V  L  L  N  I  F  N  K  L  I  I  Q  I  I  E  A  F  Q  E  I  L  L  N  L  L  F  L  S  F  K  V  N  I  V  N  F  F  D  V  Y  L  A  Y  *  I  V  E  C  L  *  L  Q  T  W  V  V  L  L  M  K  M  I  I  *  L  L  L  H  I  G  L  I  I </second_frame>
            <third_frame>   P  T  R  A  K  V  K  Y  Q  R  P  K  L  L  L  C  G  N  L  *  L  S  I  K  K  I  M  L  L  F  V  I  S  V  S  N  L  L  N  I  N  K  V  G  S  R  W  N  G  G  I  K  *  T  F  V  I  L  C  T  D  S  I  *  R  H  *  T  I  S  Q  *  K  K  R  N  F  N  *  *  I  *  Y  Y  Q  *  C  I  D  R  G  F  *  H  G  S  R  N  I  R  S  F  *  P  R  W  S  N  N  T  T  *  I  *  *  G  I  R  S  G  K  F  S  *  N  C  F  C  L  W  F  A  S  *  F  F  F  K  S  R  C  Y  *  I  Y  S  T  N  L  *  S  R  L  *  R  L  F  K  K  Y  C  *  I  C  C  F  *  V  S  R  *  T  L  S  I  S  L  M  Y  I  *  H  I  R  *  *  S  V  Y  N  F  R  H  G  S  Y  C  *  *  K  *  L  F  N  C  Y  C  T  L  D  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78854" stop="78444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRWGQGGTGELNRHLLSCVPIQYEDTKPLASRKKGISINEFDITSNASIGASNMVQGTLDPFNHVGPITQRKYNKELDRENLAKIVFVCGLPHSFSSNPGAIEYIQQTYNPDYRGFSRNTVKSVVFEFQGKHCQFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 110 chains have been computed
$ 
$ memory statistics:
$ 89904 bytes spliced alignments in total
$ 42 spliced alignments have been stored
$ 2140 bytes was the average size of a spliced alignment
$ 9624 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2406 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 128 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:51:31
-->
