<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:05:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379710" ref_strand="+" ref_description="SGN-E379710 [TUS-3-C16]">
      <seq>aaagatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcaagttgcagggattgctggtaaattatctcttaaacctgaggaatcagtgctaaaagaggcaagtgcaggaccctctatagcttccgtgaaaaaggaaaaagatgatggaacttcagcactcttgatgaaggccagcagcagtgctttttcaccgcataaagataaactatccagggagccattagcttcagaatcaatcaaggcgtcctctatgcctgacaatgcttctcatggaattgagggggcacagaatggcttccagggcagaagtgatcctttaaggtgggtcctgtttatagaactccagttactcagctgtccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258" g_stop="937" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="709" r_length="679" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E379710" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258" e_stop="937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTGAATCCTTAAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</genome_strand>
        <mrna_strand>AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTG-ATCCTTTAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398488" ref_strand="+" ref_description="SGN-E398488 [TUS-17-I2]">
      <seq>aaatgatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcaagttgcagggattgctggtaaattatctcttaaacctgaggaatcagtgctaaaagaggcaagtgcaggaccctctatagcttccgtgaaaaaggaaaaagatgatggaacttcagcactcttgatgaaggccagcagcagtgctttttcaccgcataaagataaactatccagggagccattagcttcagaatcaatcaaggcgtcctctatgcctgacaatgcttctcatggaattgaggggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258" g_stop="858" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="632" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E398488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258" e_stop="858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGG</genome_strand>
        <mrna_strand>AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210474" ref_strand="+" ref_description="SGN-E210474 [cLEC-35-I22]">
      <seq>aaagatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcaagttgcagggattgctggtaaattatctcttaaacctgaggaatcagtgctaaaagaggcaagtgcaggaccctctatagcttccgtgaaaaaggaaaaagatgatggaacttcagcactcttgatgaaggccagcagcagtgctttttcaccgcataaagataaactatccagggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258" g_stop="792" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="565" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E210474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258" e_stop="792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGC</genome_strand>
        <mrna_strand>AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701886" ref_strand="+" ref_description="SGN-E701886 [FA17AH05]">
      <seq>gtcactaaagatggaattaattgttcacctagttcagagagcatgaaagttgaggataattcaaaagatgaaatacatcgtggacctaatcaagatactcattctttcattggaggttcgtctgtaaatatggatattgatagacatgcccaagcccctcaggttgcagatacttgtcctcagtcccgtcaaccattcgactgtaaaccaaataaagaaggtagccagaataagaccatggagtgtgcacaacctttatcaggtgactctcccgtctctcaaaacaatttggacagaggttttcgccagaaaggtcctcggattgcaaaagtggtgaggagactcgcttgtaatgtggaacctctggattatggagttatccagcctgggaagttatggtgtgacaaccgggttatttatcccaagggattcaggagccgggtcagatacattgatgttttagatccaacaaatatgtctcactatatttctgaagttatagatgcaggacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="849" stop="3224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1149" g_stop="1575" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1662" g_stop="1765" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="531" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="729" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2760" g_stop="2924" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="894" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E701886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1149" e_stop="1575"/>
          <exon e_start="1662" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="2924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGGGTATAATACATGTGAAATAATTGTATTATTTTTACTCTTACTCTTGGAAGTGATGATAGACAACTTTGTTCTTTTGTTAAATGCAGGATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTA</genome_strand>
        <mrna_strand>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG......................................................................................GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701898" ref_strand="+" ref_description="SGN-E701898 [FA17BA07]">
      <seq>gtcactaaagatggaattaattgttcacctagttcagagagcatgaaagttgaggataattcaaaagatgaaatacatcgtggacctaatcaagatactcattctttcattggaggttcgtctgtaaatatggatattgatagacatgcccaagcccctcaggttgcagatacttgtcctcagtcccgtcaaccattcgactgtaaaccaaataaagaaggtagccagaataagaccatggagtgtgcacaacctttatcaggtgactctcccgtctctcaaaacaatttggacagaggttttcgccagaaaggtcctcggattgcaaaagtggtgaggagactcgcttgtaatgtggaacctctggattatggagttatccagcctgggaagttatggtgtgacaaccgggttatttatcccaagggattcaggagccgggtcagatacattgatgttttagatccaacaaatatgtctcactatatttctgaagttatagatgcaggacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcatataaaatccgagatctcaaatgatcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="849" stop="3197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1149" g_stop="1575" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1662" g_stop="1765" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="531" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="729" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2760" g_stop="2897" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="866" r_length="137" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E701898" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1149" e_stop="1575"/>
          <exon e_start="1662" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="2897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGGGTATAATACATGTGAAATAATTGTATTATTTTTACTCTTACTCTTGGAAGTGATGATAGACAACTTTGTTCTTTTGTTAAATGCAGGATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACT</genome_strand>
        <mrna_strand>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG......................................................................................GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTC-ATATAAAATCCGAGATCTCAAATGATCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258286" ref_strand="+" ref_description="SGN-E258286 [cLEG-49-A18]">
      <seq>agatgaaatacatcgtggacctaatcaagatactcattctttcattggaggttcgtctgtaaatatggatattgatagacatgcccaagcccctcaggttgcagatacttgtcctcagtcccgtcaaccattcgactgtaaaccaaataaagaaggtagccagaataagaccatggagtgtgcacaacctttatcaggtgactctcccgtctctcaaaacaatttggacagaggttttcgccagaaaggtcctcggattgcaaaagtggtgaggagactcgcttgtaatgtggaacctctggattatggagttatccagcctgggaagttatggtgtgacaaccgggttatttatcccaagggattcaggagccgggtcagatacattgatgttttagatccaacaaatatgtctcactatatttctgaagttatagatgcaggacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaccacctggaagtgttgagggcatggaaatgnttggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="914" stop="2861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1214" g_stop="1575" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1662" g_stop="1765" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="466" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2384" g_stop="2561" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="643" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E258286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1214" e_stop="1575"/>
          <exon e_start="1662" e_stop="1765"/>
          <exon e_start="2384" e_stop="2561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGGGTATAATACATGTGAAATAATTGTATTATTTTTACTCTTACTCTTGGAAGTGATGATAGACAACTTTGTTCTTTTGTTAAATGCAGGATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTT</genome_strand>
        <mrna_strand>AGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG......................................................................................GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGC-ACCACCTGGAAGTGTTGAGGGCATGGAAATGNTTGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409612" ref_strand="+" ref_description="SGN-E409612 [PPI-14-H11]">
      <seq>caaggccctcaggttacaaaaggtacttctggcggtaatatcagagatgcagatacttgtccccagtcccggcaaccattcgactgtaaaccaaataaagaaggtagtcaaaataaggccatggagtgtgcacaacctttatcaggtgacactcccgtctctcaaaacaatttggacagaggttttcgccagaaaggtcctcggattgcaaaagtggtgaggagactctcttgcaatgtggaacctctggattatggagttatccagcctggcaagttatggtgtgacaaccgggttatttatcccaagggattcaggagccgggtcagatacattgatgttttagatccaacaaatatgtctcactatgtttctgaagttgtagatgcaggacgagatggtccactgtttatggtttcacttgagcgttgtcccagtgaagtgtttgttcacttgtcccctgtcaaatgctgggatatggtccgcgagagagtgaaccaagaaatattaaagcaacataagttgggaaagccgaagcttctgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttctacaacagagattgtacaggccattcaagatatggnatgtaaaccgggtatgttctgaattctggaaatctaaaccgttgatgcagacagtacaatcttcccctagttgtggaccgttcaaaactcaatataaatccgagatctcaatgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1007" stop="3194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1311" g_stop="1575" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="310" r_length="265" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1662" g_stop="1765" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="414" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="612" r_length="198" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2760" g_stop="2894" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="747" r_length="135" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E409612" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1311" e_stop="1575"/>
          <exon e_start="1662" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="2894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGGGTATAATACATGTGAAATAATTGTATTATTTTTACTCTTACTCTTGGAAGTGATGATAGACAACTTTGTTCTTTTGTTAAATGCAGGATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGG-ATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTT-CCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCT</genome_strand>
        <mrna_strand>GATGCAGATACTTGTCCCCAGTCCCGGCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGTCAAAATAAGGCCATGGAGTGTGCACAACCTTTATCAGGTGACACTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCTCTTGCAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGCAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG......................................................................................GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATGTTTCTGAAGTTGTAGATGCAGGACGAGATGGTCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTTGAGCGTTGTCCCAGTGAAGTGTTTGTTCACTTGTCCCCTGTCAAATGCTGGGATATGGTCCGCGAGAGAGTGAACCAAGAAATATTAAAGCAACATAAGTTGGGAAAGCCGAAGCTTCTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCTACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGNATGTAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCGTTGATGCAGACAGTACAATCTTCCCCTAGTTGTGGACCGTTCAAAACTCAATAT-AAATCCGAGATCTC-AATGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434657" ref_strand="+" ref_description="SGN-E434657 [STM-60-C10]">
      <seq>caaggccctcaggttacaaaaggtacttctggcggtaatatcagagatgcagatacttgtccccagtcccggcaaccattcgactgtaaaccaaataaagaaggtagtcaaaataaggccatggagtgtgcacaacctttatcaggtgacactcccgtctctcaaaacaatttggacagaggttttcgccagaaaggtcctcggattgcaaaagtggtgaggagactctcttgcaatgtggaacctctggattatggagttatccagcctggcaagttatggtgtgacaaccgggttatttatcccaagggattcaggagccgggtcagatacattgatgttttagatccaacaaatatgtctcactatgtttctgaagttgtagatgcaggacgagatggtccactgtttatggtttcacttgagcgttgtcccagtgaagtgtttgttcacttgtcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1007" stop="2731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1311" g_stop="1575" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="310" r_length="265" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1662" g_stop="1765" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="414" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2384" g_stop="2431" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="462" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E434657" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1311" e_stop="1575"/>
          <exon e_start="1662" e_stop="1765"/>
          <exon e_start="2384" e_stop="2431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGGGTATAATACATGTGAAATAATTGTATTATTTTTACTCTTACTCTTGGAAGTGATGATAGACAACTTTGTTCTTTTGTTAAATGCAGGATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCT</genome_strand>
        <mrna_strand>GATGCAGATACTTGTCCCCAGTCCCGGCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGTCAAAATAAGGCCATGGAGTGTGCACAACCTTTATCAGGTGACACTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCTCTTGCAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGCAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG......................................................................................GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATGTTTCTGAAGTTGTAGATGCAGGACGAGATGGTCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTTGAGCGTTGTCCCAGTGAAGTGTTTGTTCACTTGTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241932" ref_strand="+" ref_description="SGN-E241932 [cLED-27-N2]">
      <seq>ccgggtcagatacattgatgttttagatccaacaaatatgtctcactatatttctgaagttatagatgcaggacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggcctacttaagaaggcaaactgtgaagaacttcatgcattgaacaatcttctcaaaaccaataatttgacccctaatcaaggtttaatgactcgacttcttaatgaagagattgataagcgaggtagatgattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1372" stop="3356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1672" g_stop="1765" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="292" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2760" g_stop="3056" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="589" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E241932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1672" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="3056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGA</genome_strand>
        <mrna_strand>CCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241255" ref_strand="+" ref_description="SGN-E241255 [cLED-26-M14]">
      <seq>ccgggtcagatacattgatgttttagatccaacaaatatgtctcactatatttctgaagttatagatgcaggacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggcctacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1372" stop="3229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1672" g_stop="1765" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="292" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2760" g_stop="2929" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="462" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E241255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1672" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="2929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAA</genome_strand>
        <mrna_strand>CCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242073" ref_strand="+" ref_description="SGN-E242073 [cLED-27-L18]">
      <seq>tcagatacattgatgtttttttatccaacaaatatgtctcactatatttggtgaattttagattcaagacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacattagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccggttatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaacttaatataaaatgcgagatctcaaatgatcctacttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1377" stop="3203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1677" g_stop="1765" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="0.84"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="288" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2760" g_stop="2903" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="432" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E242073" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1677" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="2903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATACATTGATG-TTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCT</genome_strand>
        <mrna_strand>TCAGATACATTGATGTTTTTTTATCCAACAAATATGTCTCACTATATTTGGTGAATTTTAGATTCAAGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATTAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGTTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTTAATATAAAATGCGAGATCTCAAATGATCCTACTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380056" ref_strand="+" ref_description="SGN-E380056 [TUS-3-C16](-)">
      <seq>gaagttatagatgcaggacgagatggcccactgtttatggttacacttgagcgttgtcccaatgaagtgtttgttcacttgtcccctgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggcctacttaagaaggcaaactgtgaagaacttcatgcattgaacaatcttctcaaaaccaataatttgacccctaatcaaggtttaatgactcgacttcttaatgaagagattgataagcgaggtagatgattttgattttcagcctcgtcgaggcctggacttctcataaggagttaaccctgtaaatgcttaagtcacattctagttttaggttaaattgcattaggttaaccccatttcttgaatttttgcactggctcttaacaggaagatgaaaaaaggcttgcacatagttagtattggacttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="1427" stop="3533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1727" g_stop="1765" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618">
            <donor d_prob="0.717" d_score="0.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2384" g_stop="2581" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="237" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2760" g_stop="3233" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="711" r_length="474" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E380056" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1727" e_stop="1765"/>
          <exon e_start="2384" e_stop="2581"/>
          <exon e_start="2760" e_stop="3233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATGGTATTGGATATTCTGTTTGAATGGAGCTATTTGTCAGATTTTGATTTTTGTGTGTACCTGTGGTATTTTAATTCTTATTTTGTGATATTGTGGTGCACTTAATTCTGCCGCAGTTCCTTTCTTGTCTCCTCTGCTTTAAGTTTTCCATGTAGAGTTGAGGCACACTTTATTTTCTTGTTAGTTTGATAACATGTCTATTAAACATTTATCATCAAGGGGTTTCTCCATGAAGCTTTGTGATCTCTCCAGCAGATTTCCAAGGGCTACAAGTTAGATTTATTATTTCTTTCAAAAGCTTTGTGAGTTTTTCTTTGGTTGTAATTTGCTGTTAGGGCAAGTTTGACTGCCACAAGTTTTCATCCCTTTAGACGAGAGGTCTATATTAGCTTAAATGAATTAGTCTTGTAGTGGTATAACTTTCAAAGCCTACAGGATTGAGGGTTACTTCAGAGTCTTACCTGTTTTGCCTTTTTTTTTTGGGTTTTCCTTCATGTGCCAGCTTAGTTGACATCTCTATATCTGTGTGTTATTTGGTTATTCATGCCGTTATGGTGTCATATTGTTATGCTATTTCCTGCCGTTCTAGTGTCTCTTTTAAGCAGATAAATGAACTTGCAGGTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGT</genome_strand>
        <mrna_strand>GAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTTGCACATAGTTAGTATTGGACTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395671" ref_strand="+" ref_description="SGN-E395671 [TUS-17-I2](-)">
      <seq>tgttaaatgctgggatatggtccgcgagagagtgaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggcctacttaagaaggcaaactgtgaagaacttcatgcattgaacaatcttctcaaaaccaataatttgacccctaatcaaggtttaatgactcgacttcttaatgaagagattgataagcgaggtagatgattttgattttcagcctcgtcgaggcctggacttctcataaggagttaaccctgtaaatgcttaagtcacattctagttttaggttaaattgcattaggttaaccccatttcttgaatttttgcactggctcttaacaggaagatgaaaaaaggctggcacatagttacttttggacttttggttcttgaaattattttgaggaaggttattgaaaatagaaaatacatttttcaatctttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="2131" stop="3601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2431" g_stop="2581" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2760" g_stop="3303" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="695" r_length="544" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E395671" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2431" e_stop="2581"/>
          <exon e_start="2760" e_stop="3303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTCTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTATAGAAAAGT</genome_strand>
        <mrna_strand>TGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTATTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354490" ref_strand="+" ref_description="SGN-E354490 [cTOS-17-N4]">
      <seq>agagaatcaagaaattttaaagcaacataagttgggaaagccaaagcttttgcctttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttcaacaacagagattgtacaggccattcaagatatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggcctacttaagaaggcaaactgtgaagaacttcatgcattgaacaatcttctcaaaaccaataatttgacccctaatcaaggtttaatgactcgacttcttaatgaagagattgataagcgaggtagatgattttgattttcagcctcgtcgaggcctggacttctcataaggagttaaccctgtaaatgcttaagtcacattctagttttaggttaaattgcattaggttaaccccatttcttgaatttttgcactggctcttaacaggaagatgaaaaaaggctgcacatagttacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="2161" stop="3523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2461" g_stop="2581" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2760" g_stop="3223" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="584" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E354490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2461" e_stop="2581"/>
          <exon e_start="2760" e_stop="3223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTG</genome_strand>
        <mrna_strand>AGAGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCT-GCACATAGTTACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434658" ref_strand="-" ref_description="SGN-E434658 [STM-60-C10]">
      <seq>ttgcaaccacctggaagtgttgagggcatggaaatgtttggtttttctacaacagagattgtacaggccattcaagatatggatgtaaaccgggtatgttctgaattctggaaatctaaaccgttgatgcagacagtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactggagttgatacagttctgagtggcctacttaagaaggcaaactgtgaagaacttcatgcattgaacaatcttctcaaaaccaataatttgacccctaatcaaggtttaatgactcggcttcttaatgaagagatcgataagcgaggtagatgattttgattttcagcctcgtcgaggcctggacttctcataaggagttaaccctgtaaatgctcaagtcacattctagttttaggttaaattgcattaggttaacccccatttcttgaatttttgcactggctcttaacaggaagaaaaaaaaaggccggcacatagttacttttggacttttggttcttgaaattctttgaaggttattgaaaatagaaaatacatttttcaatctttgctatagaaaattccttaatttatactggaaaaaaaaaaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="2216" stop="3624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2516" g_stop="2581" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2760" g_stop="3318" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="621" r_length="555" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="637"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E434658" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434658" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2516" e_stop="2581"/>
          <exon e_start="2760" e_stop="3318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAGGTTCTTTCACATATGTTCTTGAAATTAATATTAGATCCAAGGTTCACTAACTTCAAATCCGGAGAAAAATTTCAGTTGCCTATAATCTTATAGATAAAATAAAAATGCGGAACAAAATGGAAACTGAAGGGAAGCCTAAAAGATCTCGTCTTGACAGTATCTTTTCTTCTCATTGCAGGCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAA-CCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTCTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTATAGAAAAGTTCCTTAATTTATACT</genome_strand>
        <mrna_strand>TTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCTACAACAGAGATTGTACAG..................................................................................................................................................................................GCCATTCAAGATATGGATGTAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCGTTGATGCAGACAGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTGGAGTTGATACAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGGCTTCTTAATGAAGAGATCGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTCAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGAAAAAAAAAGGCCGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTC-TTT---GAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGCTATAGAAAA-TTCCTTAATTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391278" ref_strand="+" ref_description="SGN-E391278 [TUS-47-O5](-)">
      <seq>tatggatataaaccgggtatgttctgaattctggaaatctaaacccttgatgcagactgtacaatcttccctagttgtggaccgttcaaaactcaatataaaatccgagatctcaaatgatcctactcgagctgatatagttctgagtggcctacttaagaaggcaaactgtgaagaacttcatgcattgaacaatcttttcaaaaccaataatttgacccctaatcaaggtttaatgactcgactttttaatgaagagattgataagcgaggtagatgattttgattttcagccttgtcgaggcctggacttttcataaggagttaaccctgtaaatgcttaagtcacattttagttttaggttaaattgcattaggttaaccccatttcttgaatttttgcactggcttttaacaggaagatgaaaaaaggctggcacatagttacttttggacttttggttcttgaaatttttttgaggaaggttattgaaaatagaaaatacatttttcaatttttgttatagaaaagttccttaatttatacttggagatgtgagttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="2471" stop="74280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2771" g_stop="3337" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3338" i_stop="5105" i_length="1768">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5106" g_stop="5136" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="598" r_length="31" r_score="0.613"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E391278" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2771" e_stop="3337"/>
          <exon e_start="5106" e_stop="5136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTCTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTATAGAAAAGTTCCTTAATTTATACTTGGAGATGTGAGTTTAAAACTTGTGTATTATCAGGTTGTTATAAATGGTATGCATTCACTTAATTTCGATTGGGGAAAAGGACAATATACCTCAAACTATCGTAAATAGTGAGTGGTGCGCAAATATCTTTCGTCATACTTTTGGGACATTGATGTGCAGTTCAAAAATTAGAGCATATAGCCTTTCACTTTAACGAAAGACTTAATAATGATATGTGATGCAATTTTAGATTATGACAAGTGTATCTTCGTTAGTACGAAAGGTATATATGCTTCAATTTTTAGACGACAGGAGTATCAAAGTCTTGAAAATATGATAGAAGGTATCTACATATTATTTACGATAATTTTGAGTATATTTGTCTTGTTCCTTTGTATTGATGCATGCAATCATAACAATACATTTCAGCAAGGATTTGACCCAACAACTTTGCAACCTATAGATAAGCACAATTTGAGGAAATATTTTTAGAAAAAAACAATTATCTCTTTGTTCTGATTTATGTGAGACAATTCATTCTTCGAGAGTTGAATAACTTAAGTTTGACTTGCAATTTGCTCATGAGATTTTTAGTTTTTTTGAAATAAGATTTATATATTTGTAAGCTACGTAAAAAGTACTAATAAATCGTAATAATTGATAATTTGAATGTTTAGAAGATTTATGAAAAATTTATCATTAAAGATCAGATTTTAAAGATCAGATTTGTTTGAATTTCGTAATCGAAAGAGTCATATGAAATGGAATAATGGAGTATATGACAGATGAACAGTAATATTTGTAAATTGGATAATAATGTTCTGATGAAAATCTTTTAGTATAAAAGAGAAAACTAATGTCAAGTAGTTAATTGGGGCAAGTGAATTGAAATTCAATTAAAATAAAGGGATAATGTATAAGTACCTCTTCAACCTATGCTCGAAATTTCAGATACACATTTATATTGTACTAAGGTTTTACTAATCCCCGAACTTATTTTATTAATAATTTTCTATTCTTTTTCGGTCTACGTGACACTATTTTGTGGGCCCAACGCTGATTGACTTTTTATTCAAGATAGTGCCACGTAGGCTGAAAAAGGATAAAAAAATTACTTATATAATAAGTTCAGGGGTAATAAAACCTTAGTATAGTATAAGCGTGTCTGTGAGATTTCGGACATAGGTTGAGGGGTACTTGTGCATTTTCCCTAAAATAAATATAAGAAAATTAACTTTATGACACATAACTGTAGGAAGTTAATTTTCCATTTTTATGGTAAATGAGTATCAATAATTAAAGGGCAACTTTTACGTATAGTAAATAAAAATTTTATATTTGTATGTTATAGCAAAGTGTGCATAATTGCGCTCCATTGCAAACATAGAAACTGTATAATTCACTATACATATACACTTGAAGCAAATTGTATAAAACAAGAAAGAGAAAGACACTTAGGTAAAGAACTGTATAAAAACGAATTGTATTATTATAAGTGTATAGATATACAATTTGAATTTGTATAAAATGAGAAAAAGAGAAAGACAAAAGAGATTTGACAAGGAATATACAATTGAATTGAATTGTATAAAATGAGAAAGAGAGAAATTAGATACAATTTGAAAATTGTATAAAACAAAAAAGAGAGAAATTAGATACAATTTGAAAATTGTATAAAACGAGAAAGAGAGAAAGACAAAAGAAACTGGGCAGAGGAGTATTTTTATTGTATAATTATAAGTGTATAGGACGAATTTATATGTACTTGCATGTGTATATACAATTTTTTCACGCTTTATACAAACAGAAACACAATTTATACAAACAGAAACGAGAAA</genome_strand>
        <mrna_strand>TATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTTTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTTTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTTGTCGAGGCCTGGACTTTTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTTTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTTTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTTTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATTTTTGTTATAGAAAAGTTCCTTAATTTATACTTGGAGATGTGAGTTTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396332" ref_strand="+" ref_description="SGN-E396332 [TUS-46-P6](-)">
      <seq>attttttcaaacccaataatttgacccctaatcaaggtttaatgacaaaaaaaaattaatgaagagattgctaagcggggtagatgattttgattttcagctttgtcgaggcctggacttttcataaggagttaaccctgtaaatgcttaagtcacattttagttttaggttaaattgccttaggttaaccccattttttgaatttttgcactggcttttaacaggaagatgaaaaaagggtggcacatagttacttttggacttttggttctggaaatttttttgaggaaggttattgaaaatagaaaatacatttttcaatttttgttatagaaaagttcctaaaagtatacttggagatgtgagttttaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="2665" stop="27330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2965" g_stop="3337" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3338" i_stop="5105" i_length="1768">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5106" g_stop="5136" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="405" r_length="31" r_score="0.613"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E396332" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2965" e_stop="3337"/>
          <exon e_start="5106" e_stop="5136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGAC-TCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTCTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTATAGAAAAGTTCCTTAATTTATACTTGGAGATGTGAGTTTAAAACTTGTGTATTATCAGGTTGTTATAAATGGTATGCATTCACTTAATTTCGATTGGGGAAAAGGACAATATACCTCAAACTATCGTAAATAGTGAGTGGTGCGCAAATATCTTTCGTCATACTTTTGGGACATTGATGTGCAGTTCAAAAATTAGAGCATATAGCCTTTCACTTTAACGAAAGACTTAATAATGATATGTGATGCAATTTTAGATTATGACAAGTGTATCTTCGTTAGTACGAAAGGTATATATGCTTCAATTTTTAGACGACAGGAGTATCAAAGTCTTGAAAATATGATAGAAGGTATCTACATATTATTTACGATAATTTTGAGTATATTTGTCTTGTTCCTTTGTATTGATGCATGCAATCATAACAATACATTTCAGCAAGGATTTGACCCAACAACTTTGCAACCTATAGATAAGCACAATTTGAGGAAATATTTTTAGAAAAAAACAATTATCTCTTTGTTCTGATTTATGTGAGACAATTCATTCTTCGAGAGTTGAATAACTTAAGTTTGACTTGCAATTTGCTCATGAGATTTTTAGTTTTTTTGAAATAAGATTTATATATTTGTAAGCTACGTAAAAAGTACTAATAAATCGTAATAATTGATAATTTGAATGTTTAGAAGATTTATGAAAAATTTATCATTAAAGATCAGATTTTAAAGATCAGATTTGTTTGAATTTCGTAATCGAAAGAGTCATATGAAATGGAATAATGGAGTATATGACAGATGAACAGTAATATTTGTAAATTGGATAATAATGTTCTGATGAAAATCTTTTAGTATAAAAGAGAAAACTAATGTCAAGTAGTTAATTGGGGCAAGTGAATTGAAATTCAATTAAAATAAAGGGATAATGTATAAGTACCTCTTCAACCTATGCTCGAAATTTCAGATACACATTTATATTGTACTAAGGTTTTACTAATCCCCGAACTTATTTTATTAATAATTTTCTATTCTTTTTCGGTCTACGTGACACTATTTTGTGGGCCCAACGCTGATTGACTTTTTATTCAAGATAGTGCCACGTAGGCTGAAAAAGGATAAAAAAATTACTTATATAATAAGTTCAGGGGTAATAAAACCTTAGTATAGTATAAGCGTGTCTGTGAGATTTCGGACATAGGTTGAGGGGTACTTGTGCATTTTCCCTAAAATAAATATAAGAAAATTAACTTTATGACACATAACTGTAGGAAGTTAATTTTCCATTTTTATGGTAAATGAGTATCAATAATTAAAGGGCAACTTTTACGTATAGTAAATAAAAATTTTATATTTGTATGTTATAGCAAAGTGTGCATAATTGCGCTCCATTGCAAACATAGAAACTGTATAATTCACTATACATATACACTTGAAGCAAATTGTATAAAACAAGAAAGAGAAAGACACTTAGGTAAAGAACTGTATAAAAACGAATTGTATTATTATAAGTGTATAGATATACAATTTGAATTTGTATAAAATGAGAAAAAGAGAAAGACAAAAGAGATTTGACAAGGAATATACAATTGAATTGAATTGTATAAAATGAGAAAGAGAGAAATTAGATACAATTTGAAAATTGTATAAAACAAAAAAGAGAGAAATTAGATACAATTTGAAAATTGTATAAAACGAGAAAGAGAGAAAGACAAAAGAAACTGGGCAGAGGAGTATTTTTATTGTATAATTATAAGTGTATAGGACGAATTTATATGTACTTGCATGTGTATATACAATTTTTTCACGCTTTATACAAACAGAAACACAATTTATACAAACAGAAACGAGAAA</genome_strand>
        <mrna_strand>ATTTTTTCAAACCCAATAATTTGACCCCTAATCAAGGTTTAATGACAAAAAAAAATTAATGAAGAGATTGCTAAGCGGGGTAGATGATTTTGATTTTCAGCTTTGTCGAGGCCTGGACTTTTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTTTAGTTTTAGGTTAAATTGCCTTAGGTTAACCCCATTTTTTGAATTTTTGCACTGGCTTTTAACAGGAAGATGAAAAAAGGGTGGCACATAGTTACTTTTGGACTTTTGGTTCTGGAAATTTTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATTTTTGTTATAGAAAAGTTCCTAAAAGTATACTTGGAGATGTGAGTTTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548466" ref_strand="+" ref_description="SGN-E548466 [TUS-61-H10]">
      <seq>gggttgctaaaaaaggcagaacgtcagttggcagaccatcaactcttgctcttctcccctccagcgtcaacaacaattcaactagttctgctgctaagaagaagcaaaaacgaaagagattatcaagattatgctgattgcttgtggaagatggacaaatttctcatatggaactttgcatgggtgccaacttttttcccggcagctacagccctggccgtttcatttgccaatgactattccgcgcttgattccttgatcatatcccatcagttggttccttgaatacctaatattcccatttggtgctgttttaaccaacatgatgtcgccaccaaccagacagtcagatcaatgccaatcctcgtgtatcaagcaattgactggtttcaagaaatgaccagagaaatttgctcatccagcaagaaacttaccggtgaatgtgaaatcagagcttcgttggtgtagatgcaaggtgattttgtggctacatcagaaattatctgcgagtatgttctcttctagcttgagattttagaaaaattgacctttgaacccggtatgttttcacttgtcctaatcatctacacaaatctggaagcagaaattttgtagaaaatgaatgttcatatggatgattctcttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="14288" stop="13040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13988" g_stop="13340" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E548466" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13988" e_stop="13340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCCTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGCAAGGTGATTTTGTGGCTACATCAGAAATTATCTGCGAGTATGTTCTCTTCTAGCTTGAGATTTTAGAAAAATTGACCTTTGAACCCGGTATGTTTTCACTTGTCCTAATCATCTACACAAATCTGGAAGCAGAAATTTTGTAGAAAATGAATGTTCATATGGATGATTCTCTTATTG</genome_strand>
        <mrna_strand>GGGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCTTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGCAAGGTGATTTTGTGGCTACATCAGAAATTATCTGCGAGTATGTTCTCTTCTAGCTTGAGATTTTAGAAAAATTGACCTTTGAACCCGGTATGTTTTCACTTGTCCTAATCATCTACACAAATCTGGAAGCAGAAATTTTGTAGAAAATGAATGTTCATATGGATGATTCTCTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293004" ref_strand="+" ref_description="SGN-E293004 [cLET-12-H19]">
      <seq>ggttgctaaaaaaggcagaacgtcagttggcagaccatcaactcttgctcttctcccctccagcgtcaacaacaattcaactagttctgctgctaagaagaagcaaaaacgaaagagattatcaagattatgctgattgcttgtggaagatggacaaatttctcatatggaactttgcatgggtgccaacttttttcccggcagctacagccctggccgtttcatttgccaatgactattccgcgcttgattccttgatcatatcccatcagttggttccttgaatacctaatattcccatttggtgctgttttaaccaacatgatgtcgccaccaaccagacagtcagatcaatgccaatcctcgtgtatcaagcaattgactggtttcaagaaatgaccagagaaatttgctcatccagcaagaaacttaccggtgaatgtgaaatcagagcttcgttggtgtagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="14287" stop="13217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13987" g_stop="13517" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E293004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13987" e_stop="13517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCCTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGC</genome_strand>
        <mrna_strand>GGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCTTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558842" ref_strand="+" ref_description="SGN-E558842 [18244]">
      <seq>agaaaatgatccattcatcttaggtgtccaaactgaatggcagttacaacaaatgattcgttttggacatcgtagtctcatagccgctgattcaacatttggtataaagaaactaaagtatcctttgtgtacacttcttgtgtttgactcaagacagcatgcccttcctgttgcttggatcatcacccgcacaattgccaagcctgatgtgagtaaatggatgaaagctctacatgatcgcgtccttgctgttgatccaacatggaaagtcaatggttttctagtcgacgatgctgcagcagaaattgaccccataagggagatattttcatgtacggttctattttccctttggcggatccgtagatcatggttgagaaatatcatcaagaaatgtagtaatattgaagttcaaagagagatatttaagcgtctagggaacatagtgtacagcatttgggatggaactgatccttttgttgctttagaagaactttctcaagattttgttgatcaaatggccttcttgcagtatttcaaagccacatgggtgccgaaatttgaaatgtggcttactacaatgaagacgttacctcttgcgagccaggaagcatctggtgcaatagaagcatatcatgtcaagctgaaagtcagactatatgatgattcacatcttgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="15941" stop="14229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15641" g_stop="15524" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15523" i_stop="15446" i_length="78">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.755" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15445" g_stop="15246" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="318" r_length="200" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15245" i_stop="15159" i_length="87">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15158" g_stop="14914" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="563" r_length="245" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14913" i_stop="14646" i_length="268">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14645" g_stop="14533" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="676" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E558842" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15641" e_stop="15524"/>
          <exon e_start="15445" e_stop="15246"/>
          <exon e_start="15158" e_stop="14914"/>
          <exon e_start="14645" e_stop="14533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGATCCATTCATCTTAGGTGTCCAAACTGAATGGCAGTTACTACAAATGATTCGTTTTGGACATCGTAGTCTCATAGCCGCTGATTCAACATTTGGAATAAAGAAACTAAAGGTAATGAAGCAATCGTTTTCTTTCTGTAAACCTTGACAACATCTTCCATAGTTCTAATTTGATCTTGTAAAATGGCAGTATCCTTTGTGCACACTTCTTGTGTTTGACTCAAGACAGCATGCCCTTCCTGTTGCTTGGATCATCACCCGCACAATTGCCAAGCCTGACGTGAGTAAATGGATGAAAGCTCTGCATGATCGTGTCCTTGCTGTTGATCCAACATGGAAAGTCAATGGTTTTCTAGTCGATGATGCTGCTGCAGAAATTGACCCCATAAGGCAAAATTCTTATAGTTTACCATTTCTCTGTATCTAGTTAGTCACATGGTTCTATAACTAATTTATATGATCTTAATGTCTTTTCAGGGAGATATTTTCATGTGCGGTTCTATTTTCACTTTGGCGGATCCGTAGAGCATGGTTGAGAAATATCATCAAGAAATGTAGTAATATTGAAGTTCAAAGAGAGATATTTAAGCGTCTAGGGAACATAGTGTACAGAATTTGGGATGGAACTGATCCTTTTGTTGCTTTAGAAGAACTTTCTCAAGATTTTGTTGATCAAATAGCCTTCTTGCAGTATTTCAAAGCCACATGGGTGCCGAAATTTGGTTAGATCATCTCTTTGTTTGTTATCTACTTTTGTCACCTTGAAAAAAAATTCCGTCACAAAGAAAGAAGAAGAAGAACATAATCTGTCATATACCAAACATATAAATCAGATAGAACCACCAATATAACTTTACTATATATGCACTCCATTACTTACATGTGTATTTAGTTTATTTCACCCTACTATATATGAAAGCATTTGTTTAGAATAATTTTCTATCTTTTGCCATTATTTTATTGGTAATAATTGTTTTTTTCATTGTACAGAAATGTGGGTTACTACAATGAAGACGTTACCTCTTGCGAGCCAGGAAGCATCTGGTGCAATAGAAGCATATCATGTCAAGCTGAAAGTAAGACTATATGATGATTCACATCTT</genome_strand>
        <mrna_strand>AGAAAATGATCCATTCATCTTAGGTGTCCAAACTGAATGGCAGTTACAACAAATGATTCGTTTTGGACATCGTAGTCTCATAGCCGCTGATTCAACATTTGGTATAAAGAAACTAAAG..............................................................................TATCCTTTGTGTACACTTCTTGTGTTTGACTCAAGACAGCATGCCCTTCCTGTTGCTTGGATCATCACCCGCACAATTGCCAAGCCTGATGTGAGTAAATGGATGAAAGCTCTACATGATCGCGTCCTTGCTGTTGATCCAACATGGAAAGTCAATGGTTTTCTAGTCGACGATGCTGCAGCAGAAATTGACCCCATAAG.......................................................................................GGAGATATTTTCATGTACGGTTCTATTTTCCCTTTGGCGGATCCGTAGATCATGGTTGAGAAATATCATCAAGAAATGTAGTAATATTGAAGTTCAAAGAGAGATATTTAAGCGTCTAGGGAACATAGTGTACAGCATTTGGGATGGAACTGATCCTTTTGTTGCTTTAGAAGAACTTTCTCAAGATTTTGTTGATCAAATGGCCTTCTTGCAGTATTTCAAAGCCACATGGGTGCCGAAATTTG............................................................................................................................................................................................................................................................................AAATGTGGCTTACTACAATGAAGACGTTACCTCTTGCGAGCCAGGAAGCATCTGGTGCAATAGAAGCATATCATGTCAAGCTGAAAGTCAGACTATATGATGATTCACATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348943" ref_strand="+" ref_description="SGN-E348943 [cTOF-29-G24]">
      <seq>aaaaaagaagaagaaagaatctttaatactctaataatttgcttacttcaccacaagaacaagaattcttcttctgggaatattttagaagatggagatagttgagtccattcctgatcttgccgtgcaagatccgcctggtgaagacttctcggcatctgatttgagttggaccaaattcggaactgaagaacgacatgatgatgttgcccttattcattatgatcgagttgatgcctttatcattggagagtgttgtaatgtggaattcccaacaaggtttcacattgagaggggaaggaaaagaagcaaaggcagtttaaaggagtacaagcctgatgaatatttggagcacaggctgtattggtgttcctttggcccagaaaattacggagaaggtggtggtattttaccaagtcgacgatataggcttaacactcgaaaccgtgccgctagaccccagtcaatgaggggctgcacttgtcattttatagtgaagcgtttgtatgcccgtccatctcttgcacttcttatatataacaacaggcgtcatgttaacaagtctggttttgtatgccatgggccacttgatagagatgctattggnccntggtgcaaaaaatataccttacatttgcaatgagattcaacagcaaactatgtctatgatctatcttggcattcccgaggagaatgttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="21211" stop="15535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20911" g_stop="20834" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20833" i_stop="18234" i_length="2600">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18233" g_stop="17952" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="360" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17951" i_stop="16176" i_length="1776">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16175" g_stop="15835" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="702" r_length="342" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E348943" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20911" e_stop="20834"/>
          <exon e_start="18233" e_stop="17952"/>
          <exon e_start="16175" e_stop="15835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGAAGAAAGAATCTTTAATACTCTAATAATTTGCTTACTTCACCACAAGAACAAGAATTCTTCTTCTGGGGTCAGTAAAAATACAATCTTTTTTGGTTCTTTAATGTTAAATATCATTGTTTTTATGTTATGAACTCTGGCTATGTGAGTTGGTTTTGCTAAAAGGGTCTGTCCCAAGATGATGAATAGTTGTTCAGCGTAAAAATTAGTGCAAGTATAGTGAACCCTTTTGAGTATACTGATTAAAATGGAATGAGTTTGGTGGTTTCATGTAGCTGATTTTAGCTAATTTGTGGGGGCTGGGGGTTAAAGGTTTAATTGTTGTTTGTTTGTTGATTTTGTTGTGTTTTTTTGGCTGTATGCTGAAATGGATTGTTCTTTATGTTGGTTTCAGTATTTTGTGTGTTAATTTCCTCTTGTTTTGTTGAAAAGGTTCAATTTTGGTGCCTGGGTGGAGCTCAAATATGTTTCTTTTTGTGGTGTATCTGCTGTATGGAAATATTGCTTTTTTAGAACGTTGGACCTTGCGCCTAGTATTAGAACAGGACCAATCGCAATTATTGTTTACCGATGATGGGTCCTTGATTAAATTACCCATGCACTAGATGTTCAGCCGGGGCGTGAGGTGGGTGTTGAAGAGTCTCACATCGGATGAAAAAGGGTGGCTTGGGCTATCCGCTTTTGGCCATGAGTTAGGCTCATTGTTTTTTTGTTCTGAACTCTGCCCATGTTAGCTATTTTTGCGAAATTGAGTCAGTCCTGAGATGTTGCAGTAGATGTTCAGCGTGAAAATTAGTGCAAGTTTAATGAATCATTTTAAATACTGAATAAAATGGAATAGGTACAGAGGGCTTTGTGTAAGCTGATTTTAACTAATTTTTTGGGGGTTTGGGGTTTGATTGTGGTTCATTGGTTGATTGTTGTGATTTTTTATTTTGTTCTGTTTTCGGCTGTATGCTAAAACGAATTGTCCCTAATGTTGCCTTTAACATTTTCTGGGTCAGTTTCCTTGTTCTTTCTATATTTTTCTTCTTCTTTTTGTGGTGACTTGGTGAAGACGAAGTAAGATATTTTTGTGGGGTTTTTGCTGTATGTAGATACTCTCCTTTGGTTGTAAACTGTAAATATTGTTTTTTAGAACATTGTTTTTTGTTCTGAACTCTGTCTATTTGAGTTAGTTTGCTAAATAGATTCGGTTCCGGGATGTTGCAGTAGATGTCAACATAAAGATAGTGTAAGTATGATGAATCCTTTTAAATACTGAATAAAATGGAATGGGCAGAGAGTCTTCATGTAGTTGATCTTTACGAATATTCGGGATTGAGGTGTAATTTGACTTGTTGATAGATATCTTGCAGTTGTGATTGAATTTGCTCTGTTTTCACTTGTATGCAAACCAAATGTTGCCATGAACATTTTCTGTCAGTTTTTGTTCTTTTTGTTCTGTTATTTTCTCCCCTTTGCTGTATGTAAATACTCTGTTTTCTTTTCACCTCTTCTTTCAATATTACTCATCATATAAATTTTTGGGCTAGGTGGCAGAAGATATGTTTTACCTATTTTGACCTAGTCATTTGATAACCATTTCCCCTCTAATTTGTTGAAGGCCTAGTTTTCCCTAAAAGATAAATTAATTGATATTGGAATGAAATGGTTTGGATAGTGCTGAATGAATTAGAGGATTCATGTAGTGGACCTTTGCTAATTTGGCATTGAGGGTAGTTGATTGATTTAGTTTGGACTGGGGAAGGAAGGAGTGGCTGAGAATCCGAGGTGGAGAAGCACCGAAAGGTCGACACTGTCATTTTCAGTTTCTTCAACTTAAATGACGGTGACAACCTCTTGCTTTTTAGGAGCCAAAAGATTTTGTCTTTCTAACCGTTTTCTTCTCCTTCCAATGTCAGGGGCTCAGGTCATGCTTTTCTTATCATATCTTATCGTTGGTCATTTGTCAAGATTTCAAGAGAACTTGAACTGTTGATGACCTGATGTAATGCTAAAACTGCCATCAATCTTCCAGCTTGAGCTACATTTTCGTCGATATATTATTGTTTTTAGTGTCTATAATTGTCCAAATACATGTCTTTCTATTTGTTTTACCTCTGATGCTTGTTATTATCTAGTTCTAGCCTACATCATATACCTTAGCGACTAATTTTGTGAAGTCTATTGTACTTATTGAAAGTGTAATAGCCTATAAAGAGGTTCAGCTTCATATTAAGGCAAGTTTATGTGGACTTGTCGGTTGATTAAGCTGCTGCAAAATCAAATCAAGATTTTCCTAGCCCTCTTTTCATTCACCTCTATTGATAAGTCACTTTCCCATGTTTTATTATATATTTAGGATGGGGGATGCTATGTTGCCTTCTGTCTGTTTATGTTTGTCTGCTTAAAGTTATGAATTCTAACCACTTATGTCATATTCACCTATTAGCAAACCCCAACATAGTCGGGAATTTGAGGTGTAGATAATTGAAATGTTTTCTTCTCCTTCTCGAACCTCTGGAAGTTATTGAGTCTGGTGCTTTCAAATGAAAATGCATGCAGATTATGTAGGCCAATGGAGGCAGCTAGGCACCTGCTATCTTTTTTTTAATTGATTTCCTTCTCGAAGTTGATTGTCTGTTGCTAGTTTGACTGCTTTAGTAACTTGCCTTGCTAATTATTCAGAATATTTTAGAAGATGGAGATAGTTGAGTCCATTCCTGATCTTGCCGTGCAAGATCCGCCTGGTGAAGACTTCTCGGCATCTGATTTGAGTTGGACCAAATTCGGAACTGAAGAACGACATGATGATGTTGCCCTTATTCATTATGATCGAGTTGATGCCTTTATCATTGGAGAGTGTTGTAATGTGGAATTCCCAACAAGGTTTCACATTGAGAGGGGAAGGAAAAGAAGCAAAGGCAGTTTAAAGGAGTACAAGCCTGATGAATATTTGGAGCACAGGCTGTAAGTGCTTCAACCATTTAAGGATATATCATTTGATAACTTCTGGCCTTCTTTCTTTTTTGAAATGAATAATGTGGGTCATGATGACCACTTTCTGTTCTATTCGTCTTCACTAGTAAACTATGTACTTGTTTGAATTTTTGCTTACTTGATCTCTTGGTGGATTGACTCTGGAATGAATTTTCTGGGCAAATAAATCTGAATGTAGAGGATTGTTTGTAAATGTTTTAACTCTTGGAGATGGGGTGGGGGGTCGAAAGGGCTAACTATGAAGACTTCACTTAATTTAACCGATGGTGGATGAAGAAATACTCGGCTTCCTCAGGAGCATTTGTTTTGTATTAGTAAGTTTAAACTTCTTAAAATTTGTTTTATATAACAAAGTTATATATCCGACATATGTTGCTAAATTTTCAATTTCATGTGATTGTTTTAAAGGTTGTATCATAATCCTGTATCAGCCATTCATGTATTTAGACGTTGTTGGACTTGATTAAGTCTCCATCTAGTCAAAGATGATCCGAAATTTGTAAATCTTCTGCATCTTGTGGAAATCCAGTGTCAGAAAGTGGTACCAAGAAGTACTCTATTAGAGCACACATTTTTTAACCAAAGACTGTCTCTGCCTAACCTACAAAATCAAAATCTTTAAGGACCACAAGTACAATTTTGGTAACATCTGCTTTTAACAAAATATGTATGCTGTTGTTTCCCTCAATACATCTTTTATTCCTTTCAAACGAAATAGTTCACAAGATGCATACAGGGCTGGGCATCCGGATCTTCTTCATCTTCTTCTCTACCTTCTGATGCTGCCAGCTTCTCAGAACATGTCTGGCTGCCATGTGAGAATAGATGACTAATAGATTCCACTTAAATCCCGCAAAAGAAACACATGCTGCAGATGATGTGGCCCCTTCTTTGTAAGTTTACCCGTGTCAAGGATTGCATTTAAAGCAGCATTGTCCATCTAAAGCATGCAAATGTGGTGTTTTCCACAATATTAAAATGGCCAATGTGTTCCCAGTCAGCATCTTTGTTTCTGGATAAAATTGTACAACTCCTTGCTGAAACTTTTTCGTCCTTGCTTGGCAACCTATTGGAGAATCTTTTCTGTTAACATCCAGGGTATGGGTTCCAATAGATTTAGTTGTTGACTAATATATTCCAATTTCCAATCATTAAAATTCCTTCTAATTGCTAACCAATTTCAGGATCACAACAGCAACCGTAGAATGACTGTTAACAGCTTAACTGTACAACACAGGATATTTCTTCCTTAACATCCCATCACCAACCCAAAGTCTGTTTAGAACTTAATAGTGGATCCGTATATCCAATTTTTTATTTGAAGTTCTGTTGTAGTTCTATCCAGAGTTTTGCTGATATACGTCCAAACAACCCATTTTGTGGGCATTGACAGCATGTTGAACTGCAAGAGTCTTCTTTTTTACCTTATTTAGTACTTATACTTACCATTTCGACCAACATGTTATTCCTTTGCCCCATGATTATTTACCCATATTTGACTTTTTATAGTCAAACTAGATCAAAGTCATCTTAGGGCTAAATTTTTAATGGCTAAGTACAAAGCTCATAATATGTACTATCGCAAGAAGGTTTTAACTTTCTACCACAAGAAAATATATAAAACATCTGCTTTAGGGAAATCGTATATGACTTCTTAGGGACAAAATTATGGGAATAAGGGAGTAACACCTAGTTGTAGCTGTATGAAAAGTTTCTCCTTCATATCTTGTCATGCTGTTATTTCAGGTATTGGTGTTCCTTTGGCCCAGAAAATTACGGAGAAGGTGGTGGTATTTTACCAAGTCGACGATATAGGCTTAACACTCGAAACCGTGCCGCTAGACCCCAGTCAATGAGGGGCTGCACTTGTCATTTTATAGTGAAGCGTTTGTATGCCCGTCCATCTCTTGCACTTCTTATATATAACAACAGGCGTCATGTTAACAAGTCTGGTTTTGTATGCCATGGGCCACTTGATAGAGATGCTATTGG-CCCTGGTGCAAAAAATATACCTTACATTTGCAATGAGATTCAACAGCAAACTATGTCTATGATCTATCTTGGCATTCCCGAGGAGAATGTTTTAG</genome_strand>
        <mrna_strand>AAAAAAGAAGAAGAAAGAATCTTTAATACTCTAATAATTTGCTTACTTCACCACAAGAACAAGAATTCTTCTTCTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTTTAGAAGATGGAGATAGTTGAGTCCATTCCTGATCTTGCCGTGCAAGATCCGCCTGGTGAAGACTTCTCGGCATCTGATTTGAGTTGGACCAAATTCGGAACTGAAGAACGACATGATGATGTTGCCCTTATTCATTATGATCGAGTTGATGCCTTTATCATTGGAGAGTGTTGTAATGTGGAATTCCCAACAAGGTTTCACATTGAGAGGGGAAGGAAAAGAAGCAAAGGCAGTTTAAAGGAGTACAAGCCTGATGAATATTTGGAGCACAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGTGTTCCTTTGGCCCAGAAAATTACGGAGAAGGTGGTGGTATTTTACCAAGTCGACGATATAGGCTTAACACTCGAAACCGTGCCGCTAGACCCCAGTCAATGAGGGGCTGCACTTGTCATTTTATAGTGAAGCGTTTGTATGCCCGTCCATCTCTTGCACTTCTTATATATAACAACAGGCGTCATGTTAACAAGTCTGGTTTTGTATGCCATGGGCCACTTGATAGAGATGCTATTGGNCCNTGGTGCAAAAAATATACCTTACATTTGCAATGAGATTCAACAGCAAACTATGTCTATGATCTATCTTGGCATTCCCGAGGAGAATGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541260" ref_strand="+" ref_description="SGN-E541260 [TUS-61-P10](-)">
      <seq>ccaaaatcctgaggaagactttaggcggtggaatgaggcaaattggagtcctttgcgctgctgcttttaccgctttacaagagaatcttgttaagctggaaggagatcacagaaaggctaagattttggctgcggaacttaacaaaatcaaagggcttaaagttgatgttgccactgtagagaccaacattgtatattgcgacatactgaaggggtcaaggatcagtgaagcagagttggtcaagactttggaacaatatggtttacttatactcccagaaggcccactgagagtcagatttgttctacccccccagatttcagaaagtgatgtccactatgcagtgtcttgcattcagcgagctttagcaggagtggctgaagaaaatggtgacaagtaaccggataaatcggtttcagacatgatctctttctgttagaaactgttccaaatgtttacatgggagagagaccagtttcattttcaaattttagtcaaatctttaaacttctcatttcatgtccttttaatgatcaaaagactttgtttgttcttcaaatgtttgttgttggactagtttgtcctaatgatttagtaagaaatgaatgttggctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccctataggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="24734" stop="22100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24434" g_stop="24303" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24227" g_stop="24169" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="191" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23519" g_stop="23419" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="292" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22812" g_stop="22746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="359" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22659" g_stop="22403" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="616" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="646"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E541260" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24434" e_stop="24303"/>
          <exon e_start="24227" e_stop="24169"/>
          <exon e_start="23519" e_stop="23419"/>
          <exon e_start="22812" e_stop="22746"/>
          <exon e_start="22659" e_stop="22403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATTGTAAGTTGACTCATCAGAAATGATGCTTAATTTTCTTTTAATTTAAAAGATGATGCTTACTTTTGAGTTTCTTAACAGCTGATACGTGTTTCCGGAAATATGTGCAATTCAGTTAGATGAACCATTACCAAGATTCTGACTGAACCGGCATTTCTGCAAGAGGCTGATTCAAGCCATGGAAACAGCCTCTTGTAGAAAGCGGGGTAAGGCTGCGTATGATGTACCTTTGTCGTCCTCCCCTTCCCGAACCCCATGCATAGTGGAAGCTTTAGTGCACTGGGCTGCCCTTGATACATTACTGCTCTGACATCGATTAAAAAGCCAGCCCATCTAACCCCCTCTCCTCATAGACAACTACCTCACCTTGCTCGTAGCCCATCGGAGTTCAGACTTAATCCCCTAAAGAATAGATCAATCCAGCGATACAGAACTTCTCATGAGCCAGTTATCATGTTTCATTAACTCTTTTACATTCGGAAAACAACCTCCATAAAGCTGAGATCGAATTGCAAGAAGGAAATTTGGCTTCTGGATAGGGATGTCTTTCCTCTGGAAGGAATCTCTCCTCTCTAGTAGTCCACAGAGGGAAACCCCCATACCAATGTAAAATTTTCTTTCAGTTCCTTACGATTCCTTTTGTTATCATCAGGTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAGGTACGCTTGCCTTTTTGTTCTTCAAATCTCCATCTAAGCACAGTTACACGTTTCCCTTGAGCGTTTATGCAGCTAAGCTCGTTTAGAGTTCAAGTAGTGAGAAATTACATAACATGCGTGTTCAAGAGGTACAAACACTTGAACTATCACATCCATAGTTGCACGAGATGTTGATGCATGTAAATATCTTTTCCTTTCTTGATGACAATGTTTAGTATAGTTGATGTTTCAAAAATGATGTTGAAGCAAACACTACTTTTGGAGGATTTGACATGCATCCACTGACTGACTTTTTTGAAGAATCCGTGCAATATAGTGTATAATTGAGATTGTTAGCATTTAATGATAGGCTCTTGTAGCGCCTTAACTGGTTTTTCAACTCAAAATCTGCTAGTAGTGCTCAAACTTGCATTTGTTGGTAAGATAGAAGATCGACAACGCTACAATATTTTTTGCCCCTAGTTTTGATATGTTTCAGAAGATTTGGCTGTCCATTCTCCTTTAATCGACTTATTTATGGAAAAATGCAAGAACTCCAAATATTGGTATCCTACAGCTCGTAAGAAACCTTCTGAGACTTAGAAATGTATGCCAATTCCACTGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</genome_strand>
        <mrna_strand>CCAAAATCCTGAGGAAGACTTTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTCCCAGAAGGCCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGATTTGTTCTACCCCCCCAGATTTCAGAAAGTGATGTCCACTATGCAGTGTCTTGCATTCAG......................................................................................CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCAAATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541264" ref_strand="+" ref_description="SGN-E541264 [TUS-61-P11]">
      <seq>gaaaggctaagattttggctgcggaacttaacaaaatcaaagggcttaaagttgatgttgccactgtagagaccaacattgtatattgcgacatactgaaggggtcaaggatcagtgaagcagagttggtcaagactttggaacaatatggtttacttatactaccagaaggcccactgagagtcagatttgttctacaccaccagatttcagaaagtgatgtacactatgcagtgtcttgcattcagcgagctttagcaggagtggctgaagaaaatggtgacaagtaaccggataaatcggtttcagacatgatctctttctgttagaaactgttccaaatgtttacatgggagagagaccagtttcattttcaaattttagtcaaatctttaaacttctcatttcatgtccttttaatgatcaaaagactttgtttgttcctcatatgtttgttgttggactagtttgtcctaatgatttagtaagaaatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="24623" stop="22112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24323" g_stop="24303" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24227" g_stop="24169" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="80" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23519" g_stop="23419" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="181" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22812" g_stop="22746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="248" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22659" g_stop="22405" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="503" r_length="255" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E541264" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24323" e_stop="24303"/>
          <exon e_start="24227" e_stop="24169"/>
          <exon e_start="23519" e_stop="23419"/>
          <exon e_start="22812" e_stop="22746"/>
          <exon e_start="22659" e_stop="22405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATTGTAAGTTGACTCATCAGAAATGATGCTTAATTTTCTTTTAATTTAAAAGATGATGCTTACTTTTGAGTTTCTTAACAGCTGATACGTGTTTCCGGAAATATGTGCAATTCAGTTAGATGAACCATTACCAAGATTCTGACTGAACCGGCATTTCTGCAAGAGGCTGATTCAAGCCATGGAAACAGCCTCTTGTAGAAAGCGGGGTAAGGCTGCGTATGATGTACCTTTGTCGTCCTCCCCTTCCCGAACCCCATGCATAGTGGAAGCTTTAGTGCACTGGGCTGCCCTTGATACATTACTGCTCTGACATCGATTAAAAAGCCAGCCCATCTAACCCCCTCTCCTCATAGACAACTACCTCACCTTGCTCGTAGCCCATCGGAGTTCAGACTTAATCCCCTAAAGAATAGATCAATCCAGCGATACAGAACTTCTCATGAGCCAGTTATCATGTTTCATTAACTCTTTTACATTCGGAAAACAACCTCCATAAAGCTGAGATCGAATTGCAAGAAGGAAATTTGGCTTCTGGATAGGGATGTCTTTCCTCTGGAAGGAATCTCTCCTCTCTAGTAGTCCACAGAGGGAAACCCCCATACCAATGTAAAATTTTCTTTCAGTTCCTTACGATTCCTTTTGTTATCATCAGGTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAGGTACGCTTGCCTTTTTGTTCTTCAAATCTCCATCTAAGCACAGTTACACGTTTCCCTTGAGCGTTTATGCAGCTAAGCTCGTTTAGAGTTCAAGTAGTGAGAAATTACATAACATGCGTGTTCAAGAGGTACAAACACTTGAACTATCACATCCATAGTTGCACGAGATGTTGATGCATGTAAATATCTTTTCCTTTCTTGATGACAATGTTTAGTATAGTTGATGTTTCAAAAATGATGTTGAAGCAAACACTACTTTTGGAGGATTTGACATGCATCCACTGACTGACTTTTTTGAAGAATCCGTGCAATATAGTGTATAATTGAGATTGTTAGCATTTAATGATAGGCTCTTGTAGCGCCTTAACTGGTTTTTCAACTCAAAATCTGCTAGTAGTGCTCAAACTTGCATTTGTTGGTAAGATAGAAGATCGACAACGCTACAATATTTTTTGCCCCTAGTTTTGATATGTTTCAGAAGATTTGGCTGTCCATTCTCCTTTAATCGACTTATTTATGGAAAAATGCAAGAACTCCAAATATTGGTATCCTACAGCTCGTAAGAAACCTTCTGAGACTTAGAAATGTATGCCAATTCCACTGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGC</genome_strand>
        <mrna_strand>GAAAGGCTAAGATTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG......................................................................................CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCCTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541261" ref_strand="+" ref_description="SGN-E541261 [TUS-61-P11](-)">
      <seq>gaaaggctaagattttggctgcggaacttaacaaaatcaaagggcttaaagttgatgttgccactgtagagaccaacattgtatattgcgacatactgaaggggtcaaggatcagtgaagcagagttggtcaagactttggaacaatatggtttacttatactaccagaaggcccactgagagtcagatttgttctacaccaccagatttcagaaagtgatgtacactatgcagtgtcttgcattcagcgagctttagcaggagtggctgaagaaaatggtgacaagtaaccggataaatcggtttcagacatgatctctttctgttagaaactgttccaaatgtttacatgggagagagaccagtttcattttcaaattttagtcaaatctttaaacttctcatttcatgtccttttaatgatcaaaagactttgtttgttcttcatatgtttgttgttggactagtttgtcctaatgatttagtaagaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="24623" stop="22112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24323" g_stop="24303" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24227" g_stop="24169" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="80" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23519" g_stop="23419" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="181" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22812" g_stop="22746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="248" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22659" g_stop="22413" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="495" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E541261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24323" e_stop="24303"/>
          <exon e_start="24227" e_stop="24169"/>
          <exon e_start="23519" e_stop="23419"/>
          <exon e_start="22812" e_stop="22746"/>
          <exon e_start="22659" e_stop="22413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATTGTAAGTTGACTCATCAGAAATGATGCTTAATTTTCTTTTAATTTAAAAGATGATGCTTACTTTTGAGTTTCTTAACAGCTGATACGTGTTTCCGGAAATATGTGCAATTCAGTTAGATGAACCATTACCAAGATTCTGACTGAACCGGCATTTCTGCAAGAGGCTGATTCAAGCCATGGAAACAGCCTCTTGTAGAAAGCGGGGTAAGGCTGCGTATGATGTACCTTTGTCGTCCTCCCCTTCCCGAACCCCATGCATAGTGGAAGCTTTAGTGCACTGGGCTGCCCTTGATACATTACTGCTCTGACATCGATTAAAAAGCCAGCCCATCTAACCCCCTCTCCTCATAGACAACTACCTCACCTTGCTCGTAGCCCATCGGAGTTCAGACTTAATCCCCTAAAGAATAGATCAATCCAGCGATACAGAACTTCTCATGAGCCAGTTATCATGTTTCATTAACTCTTTTACATTCGGAAAACAACCTCCATAAAGCTGAGATCGAATTGCAAGAAGGAAATTTGGCTTCTGGATAGGGATGTCTTTCCTCTGGAAGGAATCTCTCCTCTCTAGTAGTCCACAGAGGGAAACCCCCATACCAATGTAAAATTTTCTTTCAGTTCCTTACGATTCCTTTTGTTATCATCAGGTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAGGTACGCTTGCCTTTTTGTTCTTCAAATCTCCATCTAAGCACAGTTACACGTTTCCCTTGAGCGTTTATGCAGCTAAGCTCGTTTAGAGTTCAAGTAGTGAGAAATTACATAACATGCGTGTTCAAGAGGTACAAACACTTGAACTATCACATCCATAGTTGCACGAGATGTTGATGCATGTAAATATCTTTTCCTTTCTTGATGACAATGTTTAGTATAGTTGATGTTTCAAAAATGATGTTGAAGCAAACACTACTTTTGGAGGATTTGACATGCATCCACTGACTGACTTTTTTGAAGAATCCGTGCAATATAGTGTATAATTGAGATTGTTAGCATTTAATGATAGGCTCTTGTAGCGCCTTAACTGGTTTTTCAACTCAAAATCTGCTAGTAGTGCTCAAACTTGCATTTGTTGGTAAGATAGAAGATCGACAACGCTACAATATTTTTTGCCCCTAGTTTTGATATGTTTCAGAAGATTTGGCTGTCCATTCTCCTTTAATCGACTTATTTATGGAAAAATGCAAGAACTCCAAATATTGGTATCCTACAGCTCGTAAGAAACCTTCTGAGACTTAGAAATGTATGCCAATTCCACTGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGA</genome_strand>
        <mrna_strand>GAAAGGCTAAGATTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG......................................................................................CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296180" ref_strand="+" ref_description="SGN-E296180 [cLET-24-P18]">
      <seq>aaaggctaagattttggctgcggaacttaacaaaatcaaagggcttaaagttgatgttgccactgtagagaccaacattgtatattgcgacatactgaaggggtcaaggatcagtgaagcagagttggtcaagactttggaacaatatggtttacttatactaccagaaggcccactgagagtcagatttgttctacaccaccagatttcagaaagtgatgtacactatgcagtgtcttgcattcagcgagctttagcaggagtggctgaagaaaatggtgacaagtaaccggataaatcggtttcagacatgatctctttctgttagaaactgttccaaatgtttacatgggagagagaccagtttcattttcaaattttagtcaaatctttaaacttctcatttcatgtccttttaatgatcaaaagactttgtttgttcttcatatgtttgatgttggactagtttgtcctaatgatttagtaagaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="24622" stop="22112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24322" g_stop="24303" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24227" g_stop="24169" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="79" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23519" g_stop="23419" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22812" g_stop="22746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="247" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22659" g_stop="22413" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="494" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E296180" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24322" e_stop="24303"/>
          <exon e_start="24227" e_stop="24169"/>
          <exon e_start="23519" e_stop="23419"/>
          <exon e_start="22812" e_stop="22746"/>
          <exon e_start="22659" e_stop="22413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATTGTAAGTTGACTCATCAGAAATGATGCTTAATTTTCTTTTAATTTAAAAGATGATGCTTACTTTTGAGTTTCTTAACAGCTGATACGTGTTTCCGGAAATATGTGCAATTCAGTTAGATGAACCATTACCAAGATTCTGACTGAACCGGCATTTCTGCAAGAGGCTGATTCAAGCCATGGAAACAGCCTCTTGTAGAAAGCGGGGTAAGGCTGCGTATGATGTACCTTTGTCGTCCTCCCCTTCCCGAACCCCATGCATAGTGGAAGCTTTAGTGCACTGGGCTGCCCTTGATACATTACTGCTCTGACATCGATTAAAAAGCCAGCCCATCTAACCCCCTCTCCTCATAGACAACTACCTCACCTTGCTCGTAGCCCATCGGAGTTCAGACTTAATCCCCTAAAGAATAGATCAATCCAGCGATACAGAACTTCTCATGAGCCAGTTATCATGTTTCATTAACTCTTTTACATTCGGAAAACAACCTCCATAAAGCTGAGATCGAATTGCAAGAAGGAAATTTGGCTTCTGGATAGGGATGTCTTTCCTCTGGAAGGAATCTCTCCTCTCTAGTAGTCCACAGAGGGAAACCCCCATACCAATGTAAAATTTTCTTTCAGTTCCTTACGATTCCTTTTGTTATCATCAGGTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAGGTACGCTTGCCTTTTTGTTCTTCAAATCTCCATCTAAGCACAGTTACACGTTTCCCTTGAGCGTTTATGCAGCTAAGCTCGTTTAGAGTTCAAGTAGTGAGAAATTACATAACATGCGTGTTCAAGAGGTACAAACACTTGAACTATCACATCCATAGTTGCACGAGATGTTGATGCATGTAAATATCTTTTCCTTTCTTGATGACAATGTTTAGTATAGTTGATGTTTCAAAAATGATGTTGAAGCAAACACTACTTTTGGAGGATTTGACATGCATCCACTGACTGACTTTTTTGAAGAATCCGTGCAATATAGTGTATAATTGAGATTGTTAGCATTTAATGATAGGCTCTTGTAGCGCCTTAACTGGTTTTTCAACTCAAAATCTGCTAGTAGTGCTCAAACTTGCATTTGTTGGTAAGATAGAAGATCGACAACGCTACAATATTTTTTGCCCCTAGTTTTGATATGTTTCAGAAGATTTGGCTGTCCATTCTCCTTTAATCGACTTATTTATGGAAAAATGCAAGAACTCCAAATATTGGTATCCTACAGCTCGTAAGAAACCTTCTGAGACTTAGAAATGTATGCCAATTCCACTGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGA</genome_strand>
        <mrna_strand>AAAGGCTAAGATTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG......................................................................................CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGATGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589778" ref_strand="-" ref_description="SGN-E589778 [43360]">
      <seq>cagggccaaaatcctgaggaagactctaggcggtgggatgaggcaaattggtgtcctttgcgctgctgcttttaccgctttacaagagaatcttgttaagctggaaggagatcacagaaaggcaaagagtttggctgcggaacttaacaaaatcaaagggcttaaagttgatgttgctactgtagagactaacattgtatattgcgatatactgaaggggtcaaggatcagcgaaacagaattggtcaagactttggaacagtatggtttacttatactaccagaaggcccactgagagtcagatttgttctacaccaccagatttcagaaagtgatgtacactatgcagtgtcttgccttcagcgagctttagcaggagtggctgaagaaaatggtgacaagtaaccagataaacggtttcagacatgatctctttctgttagaaactcttccaaatgttacatgggagagaccagtttcatttgcaaattttagtaaaatctttaaacttctcatcatgtccttttaatgatcaaagactgtttgttcttcatatgtttgtggttgaactagttttaaaattcatcctaatgatttagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="24736" stop="22116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24511" g_stop="24508" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24435" g_stop="24303" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="137" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24227" g_stop="24169" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23519" g_stop="23419" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="297" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22812" g_stop="22746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="364" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22659" g_stop="22438" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="577" r_length="213" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E589778" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589778" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24511" e_stop="24508"/>
          <exon e_start="24435" e_stop="24303"/>
          <exon e_start="24227" e_stop="24169"/>
          <exon e_start="23519" e_stop="23419"/>
          <exon e_start="22812" e_stop="22746"/>
          <exon e_start="22659" e_stop="22438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTATGTATGCTTTTGCATAAAAAAAATTATTTGTTCCTTGCCAAATAGCTCATTGTTTCCTTCGTTTTTTAGGCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATTGTAAGTTGACTCATCAGAAATGATGCTTAATTTTCTTTTAATTTAAAAGATGATGCTTACTTTTGAGTTTCTTAACAGCTGATACGTGTTTCCGGAAATATGTGCAATTCAGTTAGATGAACCATTACCAAGATTCTGACTGAACCGGCATTTCTGCAAGAGGCTGATTCAAGCCATGGAAACAGCCTCTTGTAGAAAGCGGGGTAAGGCTGCGTATGATGTACCTTTGTCGTCCTCCCCTTCCCGAACCCCATGCATAGTGGAAGCTTTAGTGCACTGGGCTGCCCTTGATACATTACTGCTCTGACATCGATTAAAAAGCCAGCCCATCTAACCCCCTCTCCTCATAGACAACTACCTCACCTTGCTCGTAGCCCATCGGAGTTCAGACTTAATCCCCTAAAGAATAGATCAATCCAGCGATACAGAACTTCTCATGAGCCAGTTATCATGTTTCATTAACTCTTTTACATTCGGAAAACAACCTCCATAAAGCTGAGATCGAATTGCAAGAAGGAAATTTGGCTTCTGGATAGGGATGTCTTTCCTCTGGAAGGAATCTCTCCTCTCTAGTAGTCCACAGAGGGAAACCCCCATACCAATGTAAAATTTTCTTTCAGTTCCTTACGATTCCTTTTGTTATCATCAGGTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAGGTACGCTTGCCTTTTTGTTCTTCAAATCTCCATCTAAGCACAGTTACACGTTTCCCTTGAGCGTTTATGCAGCTAAGCTCGTTTAGAGTTCAAGTAGTGAGAAATTACATAACATGCGTGTTCAAGAGGTACAAACACTTGAACTATCACATCCATAGTTGCACGAGATGTTGATGCATGTAAATATCTTTTCCTTTCTTGATGACAATGTTTAGTATAGTTGATGTTTCAAAAATGATGTTGAAGCAAACACTACTTTTGGAGGATTTGACATGCATCCACTGACTGACTTTTTTGAAGAATCCGTGCAATATAGTGTATAATTGAGATTGTTAGCATTTAATGATAGGCTCTTGTAGCGCCTTAACTGGTTTTTCAACTCAAAATCTGCTAGTAGTGCTCAAACTTGCATTTGTTGGTAAGATAGAAGATCGACAACGCTACAATATTTTTTGCCCCTAGTTTTGATATGTTTCAGAAGATTTGGCTGTCCATTCTCCTTTAATCGACTTATTTATGGAAAAATGCAAGAACTCCAAATATTGGTATCCTACAGCTCGTAAGAAACCTTCTGAGACTTAGAAATGTATGCCAATTCCACTGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTT</genome_strand>
        <mrna_strand>CAGG........................................................................GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGGATGAGGCAAATTGGTGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCAAAGAGTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCTACTGTAGAGACTAACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGCGATATACTGAAGGGGTCAAGGATCAGCGAAACAGAATTGGTCAAGACTTTGGAACAGTATGGTTTACTTATACTACCAGAAGGCCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCCTTCAG......................................................................................CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCAGATAAA-CGGTTTCAGACATGATCTCTTTCTGTTAGAAACTCTTCCAAATG-TTACAT-GG-GAGAGACCAGTTTCATTTGCAAATTTTAGTAAAATCTTTAAACTTCTCA--TCATGTCCTTTTAATGATC-AAAGAC--TGTTTGTTCTTCATATGTTTGTGGTTGAACTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609407" ref_strand="+" ref_description="SGN-E609407 [25414]">
      <seq>tgagagtcagatttgttctacaccaccagatttcagaaagtgatgtacactatgcagtgtcttgccttcagcgagctttacaggagtggctgaagaaaatggtgacaagtaaccagataaacggtttcagacatgatctctttctgttagaaactcttccaaatgttacatgggagagaccagtttcatttgcaaattttagtaaaatctttaaacttctcatcatgtccttttaatgatcaaagactgtttgttcttcatatgtttgtggttgaactagttttaaaattcatcctaatgatttagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="23117" stop="22119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22817" g_stop="22746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22659" g_stop="22438" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="283" r_length="212" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E609407" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22817" e_stop="22746"/>
          <exon e_start="22659" e_stop="22438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTT</genome_strand>
        <mrna_strand>TG-AGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCCTTCAG......................................................................................CGAGCTTTA-CAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCAGATAAA-CGGTTTCAGACATGATCTCTTTCTGTTAGAAACTCTTCCAAATG-TTACAT-GG-GAGAGACCAGTTTCATTTGCAAATTTTAGTAAAATCTTTAAACTTCTCA--TCATGTCCTTTTAATGATC-AAAGAC--TGTTTGTTCTTCATATGTTTGTGGTTGAACTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707594" ref_strand="+" ref_description="SGN-E707594 [FA33BG09]">
      <seq>catttgaggaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgcggagtacacagacaaagttggagagctagcaaagaagtatggtctgaagctccacattgatggagctcgtatattcaatgcatcagttgcacttggagtgcctgttcataggcttgtacaggcagctgattcagtttcggtatgcttatcaaaaggtcttggtgctccagttggatctgtgattgttggttcgaagagcttcattgccagggccaaaatcctgaggaagactctaggcggtggaatgaggcaaattggagtcctttgcgctgctgcttttaccgctttacaagagaatcttgttaagctggaaggagatcacagaaaggctaagattttggctgcggaacttaacaaaatcaaagggctttaaagttgatgttgccactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="26618" stop="23881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26318" g_stop="25914" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25476" g_stop="25365" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="517" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24847" g_stop="24797" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="568" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24579" g_stop="24508" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="640" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24435" g_stop="24303" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="773" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24227" g_stop="24181" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="821" r_length="48" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E707594" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26318" e_stop="25914"/>
          <exon e_start="25476" e_stop="25365"/>
          <exon e_start="24847" e_stop="24797"/>
          <exon e_start="24579" e_stop="24508"/>
          <exon e_start="24435" e_stop="24303"/>
          <exon e_start="24227" e_stop="24181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTTGTGAGTACACAATTTTTTGACTTGTTAGGAAACAACCTGTTGTTTGGAGTCTGTCAATAATGCTACCTTGATTTGGATGGATTTTCAAATTAGAGTGATTTTCAGTAGTTTCTATAAAGTATATGCTTATAATGCTATATGAAACAAGTAGCACCTTTGTGAATTGAGATCTCATGGGACTTGAAAGATAAATAAAGAGCTAAATTTGATCTAGGATAGGTTAAAATGATAAATATTGGATTCAAATAAATGACGAATGTGCAACATAGCTAGGTGCACATTTTTATTCTAGACGCATATTTGTGCACAATAGCTTAAGTGTCTGCTTTGTCTTTTGACAGATTTAATAGTCATCGGTTCTTTTATATGGACATATGACTTGATGGAATTTTGAGTTTTATAGGAGTCTAAATGTAGAGTTCTCCATAATTACTTTTAAGGGCTTCTACTTTTGTCTTTCTGTATGCCTTCTTTATTTTATGTTCATTCTGATTAACTGGGTTAATCTGTCATTTAGGCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCGGTAAGTGATATTATCCCCAAAAATCTAGATTACCCTTTCTCTTTATTGTCTCTAGTTATTTCTGATCCACTTATTGAGTAACGAAACAAATACATTTTATTCATAACATGGTATATTAAAGGAGAAACAAAGAGATGTTTTATGTTTAGCTTGTAATGTATGACAAGGTTTTTAGTGTATTTTTCCCGAATTTCTGCTCATTTAAGAGTCTGTGCAGGTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGGGTATGTATGCTTTTGCATAAAAAAAATTATTTGTTCCTTGCCAAATAGCTCATTGTTTCCTTCGTTTTTTAGGCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGC-TTAAAGTTGATGTTGCCACTGTA</genome_strand>
        <mrna_strand>CATTTGAGGAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG.........................................................................................................................................................................................................................GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG........................................................................GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTTAAAGTTGATGTTGCCACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255858" ref_strand="+" ref_description="SGN-E255858 [cLEG-35-M18]">
      <seq>ctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgcggagtacacagacaaagttggagagctagcaaagaagtatggtctgaagctccacattgatggagctcgtatattcaatgcatcagttgcacttggagtgcctgttcataggcttgtacaggcagctgattcagtttcggtatgcttatcaaaaggtcttggtgctccagttggatctgtgattgttggttcgaagagcttcattgccagggccaaaatcctgaggaagactctaggcggtggaatgaggcaaattggagtcctttgcgctgctgcttttaccgctttacaagagaatcttgttaagctggaaggagatcacagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="26299" stop="24019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25999" g_stop="25914" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25476" g_stop="25365" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="198" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24847" g_stop="24797" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="249" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24579" g_stop="24508" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="321" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24435" g_stop="24319" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="438" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E255858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25999" e_stop="25914"/>
          <exon e_start="25476" e_stop="25365"/>
          <exon e_start="24847" e_stop="24797"/>
          <exon e_start="24579" e_stop="24508"/>
          <exon e_start="24435" e_stop="24319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTTGTGAGTACACAATTTTTTGACTTGTTAGGAAACAACCTGTTGTTTGGAGTCTGTCAATAATGCTACCTTGATTTGGATGGATTTTCAAATTAGAGTGATTTTCAGTAGTTTCTATAAAGTATATGCTTATAATGCTATATGAAACAAGTAGCACCTTTGTGAATTGAGATCTCATGGGACTTGAAAGATAAATAAAGAGCTAAATTTGATCTAGGATAGGTTAAAATGATAAATATTGGATTCAAATAAATGACGAATGTGCAACATAGCTAGGTGCACATTTTTATTCTAGACGCATATTTGTGCACAATAGCTTAAGTGTCTGCTTTGTCTTTTGACAGATTTAATAGTCATCGGTTCTTTTATATGGACATATGACTTGATGGAATTTTGAGTTTTATAGGAGTCTAAATGTAGAGTTCTCCATAATTACTTTTAAGGGCTTCTACTTTTGTCTTTCTGTATGCCTTCTTTATTTTATGTTCATTCTGATTAACTGGGTTAATCTGTCATTTAGGCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCGGTAAGTGATATTATCCCCAAAAATCTAGATTACCCTTTCTCTTTATTGTCTCTAGTTATTTCTGATCCACTTATTGAGTAACGAAACAAATACATTTTATTCATAACATGGTATATTAAAGGAGAAACAAAGAGATGTTTTATGTTTAGCTTGTAATGTATGACAAGGTTTTTAGTGTATTTTTCCCGAATTTCTGCTCATTTAAGAGTCTGTGCAGGTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGGGTATGTATGCTTTTGCATAAAAAAAATTATTTGTTCCTTGCCAAATAGCTCATTGTTTCCTTCGTTTTTTAGGCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAG</genome_strand>
        <mrna_strand>CTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG.........................................................................................................................................................................................................................GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG........................................................................GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702681" ref_strand="+" ref_description="SGN-E702681 [FA19BF02]">
      <seq>ctttgataaaatccaaaaaattaaaataaatttgcatgcatgtaattaaatgtgcttatttgctgtctcatactcagacctaacagttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgcggagtacacagacaaagttggagagctagcaaagaagtatggtctgaagctccacattgatggagctcgtatattcaatgcatcagttgcacttggagtgcctgttcataggcttgtacaggcagctgattcagtttcggtatgcttatcaaaaggtcttggtgctccagttggatctgtgattgttggttcgaagagcttcattgccaggggccaaatcctgaggaagactctangcggtggaatgaggcaaattggagtcctttgcgctgctgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="28437" stop="24066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28137" g_stop="28052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28051" i_stop="27615" i_length="437">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="148" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="601" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25476" g_stop="25365" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="713" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24847" g_stop="24797" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="764" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24579" g_stop="24508" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="836" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24435" g_stop="24366" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="906" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E702681" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28137" e_stop="28052"/>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
          <exon e_start="25476" e_stop="25365"/>
          <exon e_start="24847" e_stop="24797"/>
          <exon e_start="24579" e_stop="24508"/>
          <exon e_start="24435" e_stop="24366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAGGTGTTTTGATGATGTTTTTTGTTCATGTGATTGTGCTTGTGTTTCACTGTTTTTTTCCCTTTTTTTTGTTGTTTTGTATCACTGTAATCAGTCCAAAATTTGGTATCTTTAAAGTTTTCAGCTTTTTGTGATTGTTGGGGTTGTGGGGTTTGTTTTTTTAGGAAAAAGATTGAATTTTTATGCAAAATTCCAAATCTTGATTACTGAGCTTTGTTAGTAATTGTTTGTATGTATGTGTAGTAGTGCTATTTCTCTTTGATTCTTGAAATTTGTGGGTTAGAAGACAGACACCCATTGAGTTGGGAAGTGAAAAAAAATGTAGATTTTTTTTTTGTTGATTTTGGGTTTTTTATGCTTCTTTGTATGTGATTTTCTTGTTTGTTGAAAGGATTTGATGTTTTTGTTGTGAGGATTAACTTGTGGAATTTGGTTTGCAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTTGTGAGTACACAATTTTTTGACTTGTTAGGAAACAACCTGTTGTTTGGAGTCTGTCAATAATGCTACCTTGATTTGGATGGATTTTCAAATTAGAGTGATTTTCAGTAGTTTCTATAAAGTATATGCTTATAATGCTATATGAAACAAGTAGCACCTTTGTGAATTGAGATCTCATGGGACTTGAAAGATAAATAAAGAGCTAAATTTGATCTAGGATAGGTTAAAATGATAAATATTGGATTCAAATAAATGACGAATGTGCAACATAGCTAGGTGCACATTTTTATTCTAGACGCATATTTGTGCACAATAGCTTAAGTGTCTGCTTTGTCTTTTGACAGATTTAATAGTCATCGGTTCTTTTATATGGACATATGACTTGATGGAATTTTGAGTTTTATAGGAGTCTAAATGTAGAGTTCTCCATAATTACTTTTAAGGGCTTCTACTTTTGTCTTTCTGTATGCCTTCTTTATTTTATGTTCATTCTGATTAACTGGGTTAATCTGTCATTTAGGCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCGGTAAGTGATATTATCCCCAAAAATCTAGATTACCCTTTCTCTTTATTGTCTCTAGTTATTTCTGATCCACTTATTGAGTAACGAAACAAATACATTTTATTCATAACATGGTATATTAAAGGAGAAACAAAGAGATGTTTTATGTTTAGCTTGTAATGTATGACAAGGTTTTTAGTGTATTTTTCCCGAATTTCTGCTCATTTAAGAGTCTGTGCAGGTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGGGTATGTATGCTTTTGCATAAAAAAAATTATTTGTTCCTTGCCAAATAGCTCATTGTTTCCTTCGTTTTTTAGGCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTA</genome_strand>
        <mrna_strand>CTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG.........................................................................................................................................................................................................................GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG........................................................................GGCCAAATCCTGAGGAAGACTCTANGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541262" ref_strand="+" ref_description="SGN-E541262 [TUS-61-P10]">
      <seq>aaatttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgcggagtacacagacaaagttggagagctagcaaagaagtatggtctgaagctccacattgatggagctcgtatattcaatgcatcagttgcacttggagtgcctgttcataggcttgtacaggcagctgattcagtttcggtatgcttatcaaaaggtcttggtgcntcagttggatctgtgattgttggttcgaagagcttcatttgcagggccaaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="27916" stop="24207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="66" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="519" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25476" g_stop="25365" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="631" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24847" g_stop="24797" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="682" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24579" g_stop="24508" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="754" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24435" g_stop="24426" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="764" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E541262" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
          <exon e_start="25476" e_stop="25365"/>
          <exon e_start="24847" e_stop="24797"/>
          <exon e_start="24579" e_stop="24508"/>
          <exon e_start="24435" e_stop="24426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTTGTGAGTACACAATTTTTTGACTTGTTAGGAAACAACCTGTTGTTTGGAGTCTGTCAATAATGCTACCTTGATTTGGATGGATTTTCAAATTAGAGTGATTTTCAGTAGTTTCTATAAAGTATATGCTTATAATGCTATATGAAACAAGTAGCACCTTTGTGAATTGAGATCTCATGGGACTTGAAAGATAAATAAAGAGCTAAATTTGATCTAGGATAGGTTAAAATGATAAATATTGGATTCAAATAAATGACGAATGTGCAACATAGCTAGGTGCACATTTTTATTCTAGACGCATATTTGTGCACAATAGCTTAAGTGTCTGCTTTGTCTTTTGACAGATTTAATAGTCATCGGTTCTTTTATATGGACATATGACTTGATGGAATTTTGAGTTTTATAGGAGTCTAAATGTAGAGTTCTCCATAATTACTTTTAAGGGCTTCTACTTTTGTCTTTCTGTATGCCTTCTTTATTTTATGTTCATTCTGATTAACTGGGTTAATCTGTCATTTAGGCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCGGTAAGTGATATTATCCCCAAAAATCTAGATTACCCTTTCTCTTTATTGTCTCTAGTTATTTCTGATCCACTTATTGAGTAACGAAACAAATACATTTTATTCATAACATGGTATATTAAAGGAGAAACAAAGAGATGTTTTATGTTTAGCTTGTAATGTATGACAAGGTTTTTAGTGTATTTTTCCCGAATTTCTGCTCATTTAAGAGTCTGTGCAGGTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGGGTATGTATGCTTTTGCATAAAAAAAATTATTTGTTCCTTGCCAAATAGCTCATTGTTTCCTTCGTTTTTTAGGCCAAAATCC</genome_strand>
        <mrna_strand>TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG.........................................................................................................................................................................................................................GTATGCTTATCAAAAGGTCTTGGTGCNTCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTTGCAGG........................................................................GCCAAAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728430" ref_strand="+" ref_description="SGN-E728430 [LA17DB09]">
      <seq>attgagttgggaagtgaaaaaaaatttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgcggagtacacagacaaagttggagagctagcanagaagtatggtctgaagctccacattgatggagctcgtatattcaatgcatcagttgcacttggagtgccctgtcataggcttgtacaggcagctgattcagtttcggtatgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="28058" stop="24488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27758" g_stop="27734" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27733" i_stop="27615" i_length="119">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="87" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="540" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25476" g_stop="25365" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="652" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24847" g_stop="24797" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="703" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.532" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24579" g_stop="24570" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="713" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E728430" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27758" e_stop="27734"/>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
          <exon e_start="25476" e_stop="25365"/>
          <exon e_start="24847" e_stop="24797"/>
          <exon e_start="24579" e_stop="24570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGTTGGGAAGTGAAAAAAAATGTAGATTTTTTTTTTGTTGATTTTGGGTTTTTTATGCTTCTTTGTATGTGATTTTCTTGTTTGTTGAAAGGATTTGATGTTTTTGTTGTGAGGATTAACTTGTGGAATTTGGTTTGCAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTTGTGAGTACACAATTTTTTGACTTGTTAGGAAACAACCTGTTGTTTGGAGTCTGTCAATAATGCTACCTTGATTTGGATGGATTTTCAAATTAGAGTGATTTTCAGTAGTTTCTATAAAGTATATGCTTATAATGCTATATGAAACAAGTAGCACCTTTGTGAATTGAGATCTCATGGGACTTGAAAGATAAATAAAGAGCTAAATTTGATCTAGGATAGGTTAAAATGATAAATATTGGATTCAAATAAATGACGAATGTGCAACATAGCTAGGTGCACATTTTTATTCTAGACGCATATTTGTGCACAATAGCTTAAGTGTCTGCTTTGTCTTTTGACAGATTTAATAGTCATCGGTTCTTTTATATGGACATATGACTTGATGGAATTTTGAGTTTTATAGGAGTCTAAATGTAGAGTTCTCCATAATTACTTTTAAGGGCTTCTACTTTTGTCTTTCTGTATGCCTTCTTTATTTTATGTTCATTCTGATTAACTGGGTTAATCTGTCATTTAGGCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCGGTAAGTGATATTATCCCCAAAAATCTAGATTACCCTTTCTCTTTATTGTCTCTAGTTATTTCTGATCCACTTATTGAGTAACGAAACAAATACATTTTATTCATAACATGGTATATTAAAGGAGAAACAAAGAGATGTTTTATGTTTAGCTTGTAATGTATGACAAGGTTTTTAGTGTATTTTTCCCGAATTTCTGCTCATTTAAGAGTCTGTGCAGGTATGCTTAT</genome_strand>
        <mrna_strand>ATTGAGTTGGGAAGTGAAAAAAAAT.......................................................................................................................TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCANAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGAGTGCCCTGTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG.........................................................................................................................................................................................................................GTATGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296279" ref_strand="+" ref_description="SGN-E296279 [cLET-24-P8]">
      <seq>aatttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="27916" stop="25153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27617" g_stop="27553" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="518" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25476" g_stop="25453" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="542" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E296279" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27617" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
          <exon e_start="25476" e_stop="25453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGC</genome_strand>
        <mrna_strand>AATTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334734" ref_strand="+" ref_description="SGN-E334734 [cTOE-3-I19]">
      <seq>agctaattcataaaatttaagttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagatttcgcaagctcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="28539" stop="25612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28239" g_stop="28219" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28218" i_stop="27615" i_length="604">
            <donor d_prob="0.892" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="83" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="536" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E334734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28239" e_stop="28219"/>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAATTCATAAAATTTAAGGTAAATTAAAACTGAAAAAAGCTATAAACTTGCTATATTTCTTCAGTGACAAAATCTTGAAATTTTGTTCAGTAACAAAATCTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAGGTGTTTTGATGATGTTTTTTGTTCATGTGATTGTGCTTGTGTTTCACTGTTTTTTTCCCTTTTTTTTGTTGTTTTGTATCACTGTAATCAGTCCAAAATTTGGTATCTTTAAAGTTTTCAGCTTTTTGTGATTGTTGGGGTTGTGGGGTTTGTTTTTTTAGGAAAAAGATTGAATTTTTATGCAAAATTCCAAATCTTGATTACTGAGCTTTGTTAGTAATTGTTTGTATGTATGTGTAGTAGTGCTATTTCTCTTTGATTCTTGAAATTTGTGGGTTAGAAGACAGACACCCATTGAGTTGGGAAGTGAAAAAAAATGTAGATTTTTTTTTTGTTGATTTTGGGTTTTTTATGCTTCTTTGTATGTGATTTTCTTGTTTGTTGAAAGGATTTGATGTTTTTGTTGTGAGGATTAACTTGTGGAATTTGGTTTGCAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA</genome_strand>
        <mrna_strand>AGCTAATTCATAAAATTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGATTTCGCAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468291" ref_strand="+" ref_description="SGN-E468291 [cSTB-3-O11]">
      <seq>agtgaaaaaaaatttgagtgaattgtctctctagcattgcttgtattgaagaaacagagaagagaagcttaaaaattcaatgaagatggtggtaaaaactgtggatcttcactcagacacagtcactaaaccaactgaagccatgcggaatgctatggccaatgctgaagtggatgatgatgtcttgggttatgatccaacagcccaacgccttgtagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttcaggcaccatgggttaccttatcagtgtgctgactcattgccaaatcaagggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttgcacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacaatggatcttgatctgattgaagctgcgattcaagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaatgcgcacagctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="27916" stop="25612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27746" g_stop="27734" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27733" i_stop="27615" i_length="119">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="75" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="529" r_length="454" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E468291" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27746" e_stop="27734"/>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAAAAATGTAGATTTTTTTTTTGTTGATTTTGGGTTTTTTATGCTTCTTTGTATGTGATTTTCTTGTTTGTTGAAAGGATTTGATGTTTTTGTTGTGAGGATTAACTTGTGGAATTTGGTTTGCAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCA-AGCTCA</genome_strand>
        <mrna_strand>AGTGAAAAAAAAT.......................................................................................................................TTGAGTGAATTGTCTCTCTAGCATTGCTTGTATTGAAGAAACAGAGAAGAGAAGCTTAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATGAAGATGGTGGTAAAAACTGTGGATCTTCACTCAGACACAGTCACTAAACCAACTGAAGCCATGCGGAATGCTATGGCCAATGCTGAAGTGGATGATGATGTCTTGGGTTATGATCCAACAGCCCAACGCCTTGTAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCAGGCACCATGGGTTACCTTATCAGTGTGCTGACTCATTGCCAAATCAAGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTGCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACAATGGATCTTGATCTGATTGAAGCTGCGATTCAAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATGCGCACAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329595" ref_strand="+" ref_description="SGN-E329595 [cTOD-3-I3]">
      <seq>gaacagctaattcataaaatttaagttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="28543" stop="25656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28243" g_stop="28219" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28218" i_stop="27615" i_length="604">
            <donor d_prob="0.892" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="87" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26366" g_stop="25956" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="498" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E329595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28243" e_stop="28219"/>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGCTAATTCATAAAATTTAAGGTAAATTAAAACTGAAAAAAGCTATAAACTTGCTATATTTCTTCAGTGACAAAATCTTGAAATTTTGTTCAGTAACAAAATCTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAGGTGTTTTGATGATGTTTTTTGTTCATGTGATTGTGCTTGTGTTTCACTGTTTTTTTCCCTTTTTTTTGTTGTTTTGTATCACTGTAATCAGTCCAAAATTTGGTATCTTTAAAGTTTTCAGCTTTTTGTGATTGTTGGGGTTGTGGGGTTTGTTTTTTTAGGAAAAAGATTGAATTTTTATGCAAAATTCCAAATCTTGATTACTGAGCTTTGTTAGTAATTGTTTGTATGTATGTGTAGTAGTGCTATTTCTCTTTGATTCTTGAAATTTGTGGGTTAGAAGACAGACACCCATTGAGTTGGGAAGTGAAAAAAAATGTAGATTTTTTTTTTGTTGATTTTGGGTTTTTTATGCTTCTTTGTATGTGATTTTCTTGTTTGTTGAAAGGATTTGATGTTTTTGTTGTGAGGATTAACTTGTGGAATTTGGTTTGCAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTA</genome_strand>
        <mrna_strand>GAACAGCTAATTCATAAAATTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="33405" stop="32455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33105" g_stop="32754" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33105" e_stop="32754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAATTCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAGTCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTAAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTT-CCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545395" ref_strand="+" ref_description="SGN-E545395 [TUS-68-D14](-)">
      <seq>atcaaatccaggaagaagttgcagcaaaaaatcgtgctcttgagtgggcgaaggcagaaatggcagaaaaagatagtgtaccatctgctgatgatgtggaaccttcaggtaccggacagaattccaatacagaggaaaattctgcttctgcctctcatgtgccaatagaagctgatgtgcatgtagagccttcaggtaccaaccagtgctctaatgcagaggaaaattctgcttctattgaagctgataatgtgcatgtggagccctcaggtactagccagtgccccattgcagaggaaacttctgcctccatctctcatgacacaactcctcgagacgttgatggacaggtgcaagtggctgacgtttccacaatggactctgaagccataagtgaccatgtacctatggagggtcagcaaaacccaggagaagagagtaacacagttgttactaaaacagaagactctacagtagcagcaggtgacgtggatgttactaaaacagacgactctggagtagtagcaggtgatggtgaggctgatcccaaaaacatgtaaggttctaccgagaaagtggttggttgttcaatagttccttaatcctgttttcctacatttttggaaccaagttttgcttcatttcaagaatatgttgtttggttggatgaaaattcgaaattctcaaaatttgtactgtggtttagctacctatgctggtatttgcaaaataatcaaaaactgcatttgcctaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="40892" stop="39538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40592" g_stop="39840" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="772"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E545395" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40592" e_stop="39840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCTCTCATGACACAACTCCTCGAGACGTTGATGGACAGGTGCAAGTGGCTGACGTTTCCACAATGGACTCTGAAGCCATAAGTGACCATGTACCTATGGAGGGTCAGCAAAACCCAGGAGAAGAGAGTAACACAGTTGTTACTAAAACAGAAGACTCTACAGTAGCAGCAGGTGACGTGGATGTTACTAAAACAGACGACTCTGGAGTAGTAGCAGGTGATGGTGAGGCTGATCCCAAAAACATGTAAGGTTCTACCGAGAAAGTGGTTGGTTGTTCAATAGTTCCTTAATCCTGTTTTCCTACATTTTTGGAACCAAGTTTTGCTTCATTTCAAGAATATGTTGTTTGGTTGGATGAAAATTCGAAATTCTCAAAATTTGTACTGTGGTTTAGCTACCTATGCTGGTATTTGCAAAATAATCAAAAACTGCATTTGCCTA</genome_strand>
        <mrna_strand>ATCAAATCCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTGGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCTCTCATGACACAACTCCTCGAGACGTTGATGGACAGGTGCAAGTGGCTGACGTTTCCACAATGGACTCTGAAGCCATAAGTGACCATGTACCTATGGAGGGTCAGCAAAACCCAGGAGAAGAGAGTAACACAGTTGTTACTAAAACAGAAGACTCTACAGTAGCAGCAGGTGACGTGGATGTTACTAAAACAGACGACTCTGGAGTAGTAGCAGGTGATGGTGAGGCTGATCCCAAAAACATGTAAGGTTCTACCGAGAAAGTGGTTGGTTGTTCAATAGTTCCTTAATCCTGTTTTCCTACATTTTTGGAACCAAGTTTTGCTTCATTTCAAGAATATGTTGTTTGGTTGGATGAAAATTCGAAATTCTCAAAATTTGTACTGTGGTTTAGCTACCTATGCTGGTATTTGCAAAATAATCAAAAACTGCATTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455502" ref_strand="+" ref_description="SGN-E455502 [cSTS-26-B3]">
      <seq>ctcaagtgttgctggaaacatggaaaagctggctgctttgcagaatgagtttgagaatgtgaagaagaaaatggatgatgatactaagaaagcaacaaaacttgagcaaaagatcaaagttcttactaatggatatcagatgcgagctggaaaactttggtcacagatagagtcaacctttaagaaaatggacactgcagggacagagcttgaatgcttccgagcattacaaaaacaagagcagctagcagcatcccacaggatcaacaatatgtgggaagaagttcagaagcaaaaggagcttgagcgtactttacagaaaaggtacggtgacctcatagcagatacgcaaaagatccagcatctcatggatcagtatagaatacaagatcaaatgcaggaagaaatcgcagcaaaaaatcgtgctcttgagttggccaaggcagaaattgcagaaaaggagagtataccatctgctgatgatgtggaaccttcaggtaccgtacagtgctccaatacagaggaaaattctgcttctgcctctcatgtaccaatagaagctgatgtgcatgtagagccttcagatatcgaccagtgctctaatgcagaggaaaattctgcttctattgaagctgataatgtgcatgtggagccctcaggtactagccagtgccccattgcagaggaaacttctgcttctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="41535" stop="39978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41235" g_stop="41097" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41096" i_stop="40843" i_length="254">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40842" g_stop="40278" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="704" r_length="565" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E455502" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41235" e_stop="41097"/>
          <exon e_start="40842" e_stop="40278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAGGTACAGTTTAGTGGTTTAATCTTTAATCTGAATAGTTGCACATGCTTTACATTTTTCTGTTTGCTTCATATGCTTAGAGGTTTTATCATAAGACATGGTTTTATATCACTTCTGCAATCAGATAGGTTTCTGCTTCTTACATTGGATCTTCTTTTGGCTGCTCTAGTTTTTGTTTGTTTTTCTTTTTTAACTATATGTTGAGAGTTGAACTGTAAGCTATAAATACAAGCTAACTATTCATTGTGGATGAGCAGATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCT</genome_strand>
        <mrna_strand>CTCAAGTGTTGCTGGAAACATGGAAAAGCTGGCTGCTTTGCAGAATGAGTTTGAGAATGTGAAGAAGAAAATGGATGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAG..............................................................................................................................................................................................................................................................ATGCGAGCTGGAAAACTTTGGTCACAGATAGAGTCAACCTTTAAGAAAATGGACACTGCAGGGACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATCAGTATAGAATACAAGATCAAATGCAGGAAGAAATCGCAGCAAAAAATCGTGCTCTTGAGTTGGCCAAGGCAGAAATTGCAGAAAAGGAGAGTATACCATCTGCTGATGATGTGGAACCTTCAGGTACCGTACAGTGCTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTACCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGATATCGACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCTTCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709129" ref_strand="+" ref_description="SGN-E709129 [FA42DB04]">
      <seq>aagatgaattaaaagaggccgatggattgatcaaggatgaggctcactttcttcgtgtggcaatgggacatgagagtgaatctcttgatgaatttgtcgaaatacacaaagcaactttgaatgatatcatgtactttcctacccgaaatgcttatggtctctcaagtgttgctggaaacatggaaaagcttgctgctttgcagaacgagtttgagaatgtgaagaaaaaaatggacgatgatactaagaaagcaacaaaacttgagcaaaagatcaaagttcttactaatggatatcagatgcgagctggaaagctttggtcacagatagagtcaaccttcaagaaaatggacacagcgggtacagagcttgaatgcttccgagcattacaaaaacaagagcagctagcagcatcccacaggatcaacaatatgtgggaagaagttcagaagcaaaaggagcttgagcgtactttacagaaaaggtacggtgacctcatagcagatacgcaaaagatccagcatctcatggatgagtatagaatacaagatcaaatgcaggaagaagttgcagcaaaaaatcgtgctcttgagttggcgaaggcagaaatggcagaaaaagatagtgtaccatctgctgatgatgtggaaccttcaggtaccggacagaattccaatacagaggaaaattctgcttctgcctctcatgtgccaatagaagctgatgtgcatgtagagccttcaggtaccaaccagtgctctaatgcagaggaaaattctgcttctattgaagctgataatgtgcatgtggagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="41680" stop="40027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41378" g_stop="41097" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="299" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41096" i_stop="40843" i_length="254">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40842" g_stop="40327" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="815" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E709129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41378" e_stop="41097"/>
          <exon e_start="40842" e_stop="40327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAGGTACAGTTTAGTGGTTTAATCTTTAATCTGAATAGTTGCACATGCTTTACATTTTTCTGTTTGCTTCATATGCTTAGAGGTTTTATCATAAGACATGGTTTTATATCACTTCTGCAATCAGATAGGTTTCTGCTTCTTACATTGGATCTTCTTTTGGCTGCTCTAGTTTTTGTTTGTTTTTCTTTTTTAACTATATGTTGAGAGTTGAACTGTAAGCTATAAATACAAGCTAACTATTCATTGTGGATGAGCAGATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCC</genome_strand>
        <mrna_strand>GCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAG..............................................................................................................................................................................................................................................................ATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315856" ref_strand="+" ref_description="SGN-E315856 [cTOA-26-K19]">
      <seq>tcactttcttcgtgtggcaatgggacatgagagtgaatctcttgatgaatttgtcgaaatacacaaagcaactttgaatgatatcatgtactttcctacccgaaatgcttatggtctctcaagtgttgctggaaacatggaaaagcttgctgctttgcagaacgagtttgagaatgtgaagaaaaaaatggacgatgatactaagaaagcaacaaaacttgagcaaaagatcaaagttcttactaatggatatcagatgcgagctggaaagctttggtcacagatagagtcaaccttcaagaaaatggacacagcgggtacagagcttgaatgcttccgagcattacaaaaacaagagcagctagcagcatcccacaggatcaacaatatgtgggaagaagttcagaagcaaaaggagcttgagcgtactttacagaaaaggtacggtgacctcatagcagatacgcaaaagatccagcatctcatggatgagtatagaatacaagatcaaatgcaggaagaagttgcagcaaaaaatcgtgctcttgagttggcgaaggcagaaatggcagaaaaagatagtgtaccatctgctgatgatgtggaaccttcaggtaccggacagaattnccatacagaggaaaattctgcttctgcctctcatgtgccaatagaagctgatgtgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="41652" stop="40109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41352" g_stop="41097" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41096" i_stop="40843" i_length="254">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40842" g_stop="40409" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="690" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E315856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41352" e_stop="41097"/>
          <exon e_start="40842" e_stop="40409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAGGTACAGTTTAGTGGTTTAATCTTTAATCTGAATAGTTGCACATGCTTTACATTTTTCTGTTTGCTTCATATGCTTAGAGGTTTTATCATAAGACATGGTTTTATATCACTTCTGCAATCAGATAGGTTTCTGCTTCTTACATTGGATCTTCTTTTGGCTGCTCTAGTTTTTGTTTGTTTTTCTTTTTTAACTATATGTTGAGAGTTGAACTGTAAGCTATAAATACAAGCTAACTATTCATTGTGGATGAGCAGATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGT</genome_strand>
        <mrna_strand>TCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAG..............................................................................................................................................................................................................................................................ATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTNCCATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414723" ref_strand="+" ref_description="SGN-E414723 [STM-20-C23]">
      <seq>ggctgaagaagaagcaaagcgacaggcattactccgtaaaaggtcaaaagtattgcaaagggagctccctagacctcccattgcttctctagaactaataaagagttccttaatgagagctgatgaagacaagagctcctttgttcctcctacactaattgagcaggctgatgaaatgattagaaaggaacttgtgtccttgctagaacatgataataccaagtaccctctagatgagaagccagagaaggagaagaaaaagggggtcaagcgaaaaattgttgctgaacctgctattgaggattttgaggaagatgaattaaaagaggctgatggattgatcaaggatgaagctcactttcttcgtgtggcaatgggacatgagagtgaatctcttgatgaatttgtcgaagtacacaaaacaactttgaatgatatcatgtactttcctacccggaatgcttatggtctctcaagtgttgctggaaacatggaaaagctggctgctttgcagaatgagtttgagaatgtgaagaagaaaatggatgatgatactaagaaagcaacaaaacttgagcaaaagatcaaagttcttactaatggatatcagatacgagctggaaaactttggtcacagatagagtcaaccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="42754" stop="40499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42454" g_stop="42127" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42126" i_stop="41379" i_length="748">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41378" g_stop="41097" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="610" r_length="282" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41096" i_stop="40843" i_length="254">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40842" g_stop="40800" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="653" r_length="43" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E414723" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42454" e_stop="42127"/>
          <exon e_start="41378" e_stop="41097"/>
          <exon e_start="40842" e_stop="40800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAGGTACGTTCATGTTACAGAGAGAAAAAAATGGTTTTCTTTACATCTTTTGTCGATATACTTTTTCCTTACCTGCATTTATGCATAAAAATGACAAAGAGTTGTCTAAATTCCATATAAATCAATTTGGAAATTATTTTTTTAACATCCCAGCAACAACTGAGCGGAAGAGTTTCAAATGAGAGTTAGTGTCACGTAAGACTAGAAAAGAAAAAGAGTTCTCTAAATTCCATGTAAAGCTATTTTGGAAGTACTTCTTTAACATTTTCATATAACCTTTTTGTATAAGAATTTCTGAAACCATTCCTACAATTGCTGATAAATCCGAAACTATGGCTGCAAGAATTGAAGATTACGGTAGGTTCAATAGGATCATCCAATACTATATTTGTCAAGTTATATTTAACTGTATGTAGTGTATATGTTATGTATATATATGTTTTACTTGACTTTACACTACACAAGCTAGGTTACATGCTCTACTTTTTAGACCCTACTGAACTCGGGACAATACACGATGTCACAGCTTTGTTTTTAGTATTTGTTGTTACGAGGACGGATTAACTGAAATTGGAAATTCGAGTCTTGAGACACCAAAAAAATGCCGATGGTGAATAGACTCCTTGTCCCTTTTATTGTGTGCTAATAGATGTGCCCTTTCATTACCAAATTCGTGTTTAAACAATGACGTTCTTTGGAGGTTGTATGATTTTATCTTGAGCCTACTGCATTACTAACTCCACTTGTGCAGGCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAGGTACAGTTTAGTGGTTTAATCTTTAATCTGAATAGTTGCACATGCTTTACATTTTTCTGTTTGCTTCATATGCTTAGAGGTTTTATCATAAGACATGGTTTTATATCACTTCTGCAATCAGATAGGTTTCTGCTTCTTACATTGGATCTTCTTTTGGCTGCTCTAGTTTTTGTTTGTTTTTCTTTTTTAACTATATGTTGAGAGTTGAACTGTAAGCTATAAATACAAGCTAACTATTCATTGTGGATGAGCAGATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCA</genome_strand>
        <mrna_strand>GGCTGAAGAAGAAGCAAAGCGACAGGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTAATGAGAGCTGATGAAGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGATTGATCAAGGATGAAGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAGTACACAAAACAACTTTGAATGATATCATGTACTTTCCTACCCGGAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTGGCTGCTTTGCAGAATGAGTTTGAGAATGTGAAGAAGAAAATGGATGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAG..............................................................................................................................................................................................................................................................ATACGAGCTGGAAAACTTTGGTCACAGATAGAGTCAACCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305537" ref_strand="+" ref_description="SGN-E305537 [cLEX-14-E3]">
      <seq>agaagagaagatcgaagaagacatgtctgataggattgccagggagaaggctgaagaagaagcaaagcgacaagcattactccgtaaaaggtcaaaagtattgcaaagggagctccctagacctcccattgcttctctagaactaataaagagttccttgatgagagctgatgaggacaagagctcctttgttcctcctacactaattgagcaggctgatgaaatgattagaaaggaacttgtgtccttgctagaacatgataataccaagtaccctctagatgagaagccagagaaggagaagaaaaagggggtcaagcgaaaaattgttgctgaacctgctattgaggattttgaggaagatgaattaaaagaggccgatggattgatcaaggatgaggctcactttcttcgtgtggcaatgggacatgagagtgaatctcttgatgaatttgtcgaaatacacaaagcaactttgaatgatatcatgtactttcctacccgaaatgcttatggtctctcaagtgttgctggaaacatggaaaagcttgctgctttgcagaacgagtttgagaatgtgaagaaaaaaatggacgatgatactaagaaagcaacaaaacttgagcaaaagatcaaagttcttactaatggatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="42802" stop="40799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42502" g_stop="42127" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42126" i_stop="41379" i_length="748">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41378" g_stop="41099" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="656" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E305537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42502" e_stop="42127"/>
          <exon e_start="41378" e_stop="41099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAGGTACGTTCATGTTACAGAGAGAAAAAAATGGTTTTCTTTACATCTTTTGTCGATATACTTTTTCCTTACCTGCATTTATGCATAAAAATGACAAAGAGTTGTCTAAATTCCATATAAATCAATTTGGAAATTATTTTTTTAACATCCCAGCAACAACTGAGCGGAAGAGTTTCAAATGAGAGTTAGTGTCACGTAAGACTAGAAAAGAAAAAGAGTTCTCTAAATTCCATGTAAAGCTATTTTGGAAGTACTTCTTTAACATTTTCATATAACCTTTTTGTATAAGAATTTCTGAAACCATTCCTACAATTGCTGATAAATCCGAAACTATGGCTGCAAGAATTGAAGATTACGGTAGGTTCAATAGGATCATCCAATACTATATTTGTCAAGTTATATTTAACTGTATGTAGTGTATATGTTATGTATATATATGTTTTACTTGACTTTACACTACACAAGCTAGGTTACATGCTCTACTTTTTAGACCCTACTGAACTCGGGACAATACACGATGTCACAGCTTTGTTTTTAGTATTTGTTGTTACGAGGACGGATTAACTGAAATTGGAAATTCGAGTCTTGAGACACCAAAAAAATGCCGATGGTGAATAGACTCCTTGTCCCTTTTATTGTGTGCTAATAGATGTGCCCTTTCATTACCAAATTCGTGTTTAAACAATGACGTTCTTTGGAGGTTGTATGATTTTATCTTGAGCCTACTGCATTACTAACTCCACTTGTGCAGGCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATC</genome_strand>
        <mrna_strand>AGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474346" ref_strand="+" ref_description="SGN-E474346 [cSTB-36-A4]">
      <seq>ggctgaagaagaagcaaagcgacaggcattactccgtaaaaggtcaaaagtattgcaaagggagctccctagacctcccattgcttctctagaactaataaagagttccttaatgagagctgatgaagacaagagctcctttgttcctcctacactaattgagcaggctgatgaaatgattagaaaggaacttgtgtccttgctagaacatgataataccaagtaccctctagatgagaagccagagaaggagaagaaaaagggggtcaagcgaaaaattgttgctgaacctgctattgaggattttgaggaagatgaattaaaagaggctgatggattgatcaaggatgaagctcactttcttcgtgtggcaatgggacatgagagtgaatctcttgatgaatttgtcgaagtacacaaaacaactttgaatgatatcatgtactttcctacccggaatgcttatggtctctcaagtgttgctggaaacatggaaaagctggctgctttgcagaatgagtttgagaatgtgaagaagaaaatggatgatgatactaagaaagcaacaaaacttgagcaaaagatcaaagttcttactaatggatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="42754" stop="40799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42454" g_stop="42127" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42126" i_stop="41379" i_length="748">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41378" g_stop="41099" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="608" r_length="280" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E474346" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42454" e_stop="42127"/>
          <exon e_start="41378" e_stop="41099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAGGTACGTTCATGTTACAGAGAGAAAAAAATGGTTTTCTTTACATCTTTTGTCGATATACTTTTTCCTTACCTGCATTTATGCATAAAAATGACAAAGAGTTGTCTAAATTCCATATAAATCAATTTGGAAATTATTTTTTTAACATCCCAGCAACAACTGAGCGGAAGAGTTTCAAATGAGAGTTAGTGTCACGTAAGACTAGAAAAGAAAAAGAGTTCTCTAAATTCCATGTAAAGCTATTTTGGAAGTACTTCTTTAACATTTTCATATAACCTTTTTGTATAAGAATTTCTGAAACCATTCCTACAATTGCTGATAAATCCGAAACTATGGCTGCAAGAATTGAAGATTACGGTAGGTTCAATAGGATCATCCAATACTATATTTGTCAAGTTATATTTAACTGTATGTAGTGTATATGTTATGTATATATATGTTTTACTTGACTTTACACTACACAAGCTAGGTTACATGCTCTACTTTTTAGACCCTACTGAACTCGGGACAATACACGATGTCACAGCTTTGTTTTTAGTATTTGTTGTTACGAGGACGGATTAACTGAAATTGGAAATTCGAGTCTTGAGACACCAAAAAAATGCCGATGGTGAATAGACTCCTTGTCCCTTTTATTGTGTGCTAATAGATGTGCCCTTTCATTACCAAATTCGTGTTTAAACAATGACGTTCTTTGGAGGTTGTATGATTTTATCTTGAGCCTACTGCATTACTAACTCCACTTGTGCAGGCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATC</genome_strand>
        <mrna_strand>GGCTGAAGAAGAAGCAAAGCGACAGGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTAATGAGAGCTGATGAAGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGATTGATCAAGGATGAAGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAGTACACAAAACAACTTTGAATGATATCATGTACTTTCCTACCCGGAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTGGCTGCTTTGCAGAATGAGTTTGAGAATGTGAAGAAGAAAATGGATGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481906" ref_strand="+" ref_description="SGN-E481906 [cSTD-20-G1]">
      <seq>ataatgctaaactggggcaatttaattcaaaaaaagaattgctttctggtttgaaaagccttcctcagcccaagaatgagtaccagatagtcgtccaacaacctcctgaagaaaatgaagaaccagaagagaagatcgaagaagacatgtctgataggattgccagggagaaggctgaagaagaagcaaagcgacaggcattactccgtaaaaggtcaaaagtattgcaaagggagctccctagacctcccattgcttctctagaactaataaagagttccttaatgagagctgatgaagacaagagctcctttgttcctcctacactaattgagcaggctgatgaaatgattagaaaggaacttgtgtccttgctagaacatgataataccaagtaccctctagatgagaagccagagaaggagaagaaaaagggggtcaagcgaaaaattgttgctgaacctgctattgaggattttgaggaagatgaattaaaagaagctgatggattgatcaaggatgaagctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="42925" stop="41049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42626" g_stop="42127" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42126" i_stop="41379" i_length="748">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41378" g_stop="41349" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="530" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E481906" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42626" e_stop="42127"/>
          <exon e_start="41378" e_stop="41349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAGGTACGTTCATGTTACAGAGAGAAAAAAATGGTTTTCTTTACATCTTTTGTCGATATACTTTTTCCTTACCTGCATTTATGCATAAAAATGACAAAGAGTTGTCTAAATTCCATATAAATCAATTTGGAAATTATTTTTTTAACATCCCAGCAACAACTGAGCGGAAGAGTTTCAAATGAGAGTTAGTGTCACGTAAGACTAGAAAAGAAAAAGAGTTCTCTAAATTCCATGTAAAGCTATTTTGGAAGTACTTCTTTAACATTTTCATATAACCTTTTTGTATAAGAATTTCTGAAACCATTCCTACAATTGCTGATAAATCCGAAACTATGGCTGCAAGAATTGAAGATTACGGTAGGTTCAATAGGATCATCCAATACTATATTTGTCAAGTTATATTTAACTGTATGTAGTGTATATGTTATGTATATATATGTTTTACTTGACTTTACACTACACAAGCTAGGTTACATGCTCTACTTTTTAGACCCTACTGAACTCGGGACAATACACGATGTCACAGCTTTGTTTTTAGTATTTGTTGTTACGAGGACGGATTAACTGAAATTGGAAATTCGAGTCTTGAGACACCAAAAAAATGCCGATGGTGAATAGACTCCTTGTCCCTTTTATTGTGTGCTAATAGATGTGCCCTTTCATTACCAAATTCGTGTTTAAACAATGACGTTCTTTGGAGGTTGTATGATTTTATCTTGAGCCTACTGCATTACTAACTCCACTTGTGCAGGCCGATGGATTGATCAAGGATGAGGCTCAC</genome_strand>
        <mrna_strand>ATAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATAGTCGTCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAGGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTAATGAGAGCTGATGAAGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGATTGATCAAGGATGAAGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745605" ref_strand="+" ref_description="SGN-E745605 [GI|47105265]">
      <seq>ggattccgaaatatcttctcgtcggagcggaaaaacgccgccgcggcctgaatctactctaccggagaccgtcatttctcgccggcgtatagatttcagctcatttacaggcaaaatctgaggtatacttatccaaaaccctagatttctcggagtctcccttgggagactgaaatagttagcaaacatgaggattatgataaagggaggagtatggaagaacacggaggatgagattctaaaggcggcggtgatgaagtatgggaagaatcagtgggctcgtatttcttctttacttgttcgtaaatctgctaagcagtgtaaagctcgctggtatgaatggctcgatccttcaattaagaagactgaatggactagagaggaggatgaaaaactacttcaccttgcaaaactcatgcctacccaatggaggacaattgcgccaatcgttggccgtacaccatcacaatgccttgaacgttatgagaagcttctcgatgcagcatgtactaaggatgagaactatgatcctaatgatgatccaagaaaattgaagcccggagagattgatcctaacccggaatcaaagcctgctcgtcctgatcctgttgatatggatgaggacgagaaagaaatgctttctgaagcacgggctaggttggccaacacaagaggcaagaaggctaaaaggaaagccagagaaaagcagcttgaagaggcgcggaggcttgcttctttacagaagaggagagaactgaaggctgctggaatagatgtccgtcaaaggaagagaaaaaggagaggtattgattacaatgctgaaattccctttgaaaagaagcctcctccaggtttctatgatgtcactgaggaagaccgtccagttgatcaacctaagtttccaactaccattgaggaactagaaggtgaaaggagagtcgataaggaagctcgcctaaggaagcaggatattgcgaggaacaaaattgcagagagacaggatgcccctacatccatattgcatgcgaacaaacttaatgatccagaagcagtgaggaagaggtcgaaactgaatcttccagcaccacagattccagatcatgaattggaggccatagcaaagataggtattgccagtgatctaattgggggagatgaactgtccgaagggaatgctgcaacgcgtgctcttcttgcaaattatgcccagacaccacaacatgctatgactcctatgcgaacacctcaaagaaccccttcaactaagcaagacgccattatgatggaagcagaaaatcaacgaagattgactcaatctcaaacaccattacttggaggagataatcctttgttgcacccctcagatttctcgggtgtcactcctaagaaaagggaggttcaaactccaaacccacttttaactccttcagcgactcctggagccacgagccttactcctagaattggcatgacaccttcgagagattcttatgggatgacacccaaaggaactcctatgagggacgagctacgcattaatgaagaaatggatatgcatagtaatgctaaactggggcaatttaattcaaaaaaagaattgctttctggtttgaaaagccttcctcagcccaagaatgagtaccagattgtcatccaacaacctcctgaagaaaatgaagaaccagaagagaagatcgaagaagacatgtctgataggattgccagggagaaggctgaagaagaagcaaagcgacaagcattactccgtaaaaggtcaaaagtattgcaaagggagctccctagacctcccattgcttctctagaactaataaagagttccttgatgagagctgatgaggacaagagctcctttgttcctcctacactaattgagcaggctgatgaaatgattagaaaggaacttgtgtccttgctagaacatgataataccaagtaccctctagatgagaagccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="45431" stop="41894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45132" g_stop="44769" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43821" g_stop="42194" g_length="1628"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="1992" r_length="1628" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E745605" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1992</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45132" e_stop="44769"/>
          <exon e_start="43821" e_stop="42194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAGGTCAGTTTTTTATTCTCTATTGAATTAAGCTTGTTTGTGAGTCATATCCTACTGTTGTTTGGTAGCTAGTAGATACATGTACAAGTTATGAGATAAATTGTTTTGTTATCTTATTGGCCTGCATTACTTACCAAATGAGTTTGTTCATATGTTTTGGTAAAAGGTTATATGAAAACTGTTTTTGATTGGTAACTTTTGCTGTGGAGAGGGTATAACAGTAGGTGACATATGCTCATAGTACCAGCTGCATGATAGGTATGAGGATAGGTTTGAATGTTAGATTTTGCGAATCATTGTTCAAGTGCCAAGGTAGGGGTAAGGTCTGCGTGGACTATACCATCAAAAGGAGACCACAAGTGGGATTATACCGGGCATGTTGTTGTAATTTTCAATTGTTGATTCAAAAGAGTGGCAGGAAGTGTGTGTTAAAGATGTCCGAGAAGGAAACTAGTTAGTGTGGAAGTTATTTTCCTCCAAAATTGAGTAAAATACTTCTCATTTCAGACCCTGACAACCAAATATATAACATTCTAGTTCACTGGGTGTTGGTTCTTTTTTCTTGCTTAGTTTAATGCGACATGCGAGTTATCTTTTTTTGTTATGTGTGACACCGTTATGTATTTGTTGATAGCTGTCACATTTCAGATTTCATCCTATTCCATTGTGAACTAGAGAAGTTCTGTTTTGTGAGCATACTGTGGCTTTGCACCAGTTTGTTTTTGGCTTGATTATTGGCATGCAAGATCTGAAACTAGTTTTCTGTGTGGAGATTTCTGTCTGAGTTTTTCCAATCTTTTTCTATTATTCCGTTTATCAATGACAGCTAATGATTTTCTGAATAGAGAAAGTGGAGAAGTCACAGTTTTTCAAGTTTACCTCAAGACTGGTAGGAACTTATGTTTTAGCTTAACCACTTCTTGACACAACTTACTGCTATTTTCTTCCAGACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAA</genome_strand>
        <mrna_strand>GGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482195" ref_strand="+" ref_description="SGN-E482195 [cSTD-21-E6]">
      <seq>gcaacgcgtgctcgtcttgcaaattatgcccagacaccacagcatgcagtgactcctatgcgaacacctcaaagaaccccatcaactaagcaagacgccattatgatggaaggagaaaatcaacgaagattgactcaatctcaaacaccattacttggaggggataatcctatgttgcacccctcagatttctcgggggtcaatcccaacaaaagggaggttcaaactccaaacccacttttaactccatcagcgactcctggagccacgagcctcactcctagaattggcatgacaccttcgagagattcatatgggatgacacccgaaggaactcgcatgagggaagagctacgccttactgaacaaatgggtatgcctaataatgctaaactggggcaatttaattgaaaataagaattgctttctgggttgcaaagccttcctccgccctcgaatgggtaccagatagtcgtccaactacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43308" stop="42222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43008" g_stop="42522" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E482195" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43008" e_stop="42522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTC</genome_strand>
        <mrna_strand>GCAACGCGTGCTCGTCTTGCAAATTATGCCCAGACACCACAGCATGCAGTGACTCCTATGCGAACACCTCAAAGAACCCCATCAACTAAGCAAGACGCCATTATGATGGAAGGAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGGGATAATCCTATGTTGCACCCCTCAGATTTCTCGGGGGTCAATCCCAACAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCATCAGCGACTCCTGGAGCCACGAGCCTCACTCCTAGAATTGGCATGACACCTTCGAGAGATTCATATGGGATGACACCCGAAGGAACTCGCATGAGGGAAGAGCTACGCCTTACTGAACAAATGGGTATGCCTAATAATGCTAAACTGGGGCAATTTAATTGAAAATAAGAATTGCTTTCTGGGTTGCAAAGCCTTCCTCCGCCCTCGAATGGGTACCAGATAGTCGTCCAACTACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476735" ref_strand="+" ref_description="SGN-E476735 [cSTB-45-F22]">
      <seq>gcaacgcgtgctcttcttgcaaattatgcccagacaccacagcatgcaatgactcctatgcgaacacctcaaagaaccccatcaactaagcaagacgccattatgatggaagcagaaaatcaacgaagattgactcaatctcaaacaccattacttggaggtgataatcctttgttgcacccctcagatttctcgggtgtcactcccaagaaaagggaggttcaaactccaaacccacttttaactccatcagcgactcctggagccacgagccttactcctagaattggcatgacaccttcgagagattcttatgggatgacacccaaaggaactcccatgagggatgagctacgcattaatgaagaaatggatatgcataataatgctaaactggggcaatttaattcaaaaaaagaattgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43308" stop="42281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43008" g_stop="42581" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E476735" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43008" e_stop="42581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTC</genome_strand>
        <mrna_strand>GCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAGCATGCAATGACTCCTATGCGAACACCTCAAAGAACCCCATCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGTGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCCAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCATCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCCATGAGGGATGAGCTACGCATTAATGAAGAAATGGATATGCATAATAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456202" ref_strand="+" ref_description="SGN-E456202 [cSTS-28-H10]">
      <seq>gcagcttgaagagtcgccgaaggcttgcttctttacagaagaggagagaacctcaaggctgctggaatagatgtccgtcaaaggaagagaaaaaggagaggtattgattacaatgctgaaatcccctttgaaaagaagcctcctccaggtttctatgacatcactgaggaagaccgtccagttgatcaacctaagtttccaactaccattgaggaactggaaggtgaaaggagagtcgataaggaagctcgcctaagaaagcaggatgttgcgaggaataaaattgcagaaaggcaggatgcccctacatccatattgcatgcgaacaaacttaatgatccagaagcagtgaggaagaggtcgaaactgaatcttcctgcaccacagattccagatcatgaattggaggccatagcaaagataggtattgccagtgatctaatagggggtgatgaactgtccgaagggaatgctgcaacgcgtgctcttcttgcaaattatgcccagacaccacagcatgcaatgactcctatgcgaacacctcaaagaaccccatcaactaagcaagacgccattatgatggaagcagaaaatcaacgaagattgactcaatctcaaaccaccattacttggaggtgataatcctttgttgcacccctcagatttctcggggtgtcactcccaagaaaggggaggttcaaactccaaacccacttttaactccatcagcgactcctggagccacgagccttactcctagaattggcatgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43780" stop="42410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43480" g_stop="42710" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E456202" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43480" e_stop="42710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTGAAGAGGCG-CGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAA-CTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAA-CACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTC-GGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACC</genome_strand>
        <mrna_strand>GCAGCTTGAAGAGTCGCCGAAGGCTTGCTTCTTTACAGAAGAGGAGAGAACCTCAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATCCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGACATCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTGGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGAAAGCAGGATGTTGCGAGGAATAAAATTGCAGAAAGGCAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCTGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATAGGGGGTGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAGCATGCAATGACTCCTATGCGAACACCTCAAAGAACCCCATCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACCACCATTACTTGGAGGTGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGGTGTCACTCCCAAGAAAGGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCATCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545396" ref_strand="+" ref_description="SGN-E545396 [TUS-68-D14]">
      <seq>tagatgtccgtcaaaggaagagaaaaaggagaggtattgattacaatgctgaaattccctttgaaaagaagcctcctccaggtttctatgatgtcactgaggaagaccgtccagttgatcaacctaagtttccaactaccattgaggaactagaaggtgaaaggagagtcgataaggaagctcgcctaaggaagcaggatattgcgaggaacaaaattgcagagagacaggatgcccctacatccatattgcatgcgaacaaacttaatgatccagaagcagtgaggaagaggtcgaaactgaatcttccagcaccacagattccagatcatgaattggaggccatagcaaagataggtattgccagtgatctaattgggggagatgaactgtccgaagggaatgctgcaacgcgtgctcttcttgcaaattatgcccagacaccacaacatgctatgactcctatgcgaacacctcaaagaaccccttcaactaagcaagacgccattatgatggaagcagaaaatcaacgaagattgactcaatctcaaacaccattacttggaggagataatcctttgttgcacccctcagatttctcgggtgtcactcctaagaaaagggaggttcaaactccaaacccactttttactccttcagcgactcctggagccacgagccttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43715" stop="42429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43415" g_stop="42729" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E545396" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43415" e_stop="42729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTC</genome_strand>
        <mrna_strand>TAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTTACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308771" ref_strand="+" ref_description="SGN-E308771 [cLEZ-11-M12]">
      <seq>agatgtccgtcaaaggaatataaaaaggacaggtattgattacaatgctgaaattccctttgaaaagaagcctcctccaagtttctatgatgtcactgaggaagaccgtccagttgatcaacctaagtttccaactaccattgaggaactagaaggtgaaaggagagtcgataaggaagctcgcctaaggaagcacgatattgcgaggaacaaaattgcagagagacaggatgcccctacatccatattgcatgcgaacaaacttaatgatccagaagcagtgaggaagaggtcgaaactgaatcttccagcaccacagattccagatcatgaattggaggccatagcaaagataggtattgccagtgatctaattgggggagatgaactgtccgaagggaatgctgcaacgcgtgctcttcttgcaaattatgcccagacaccacaacatgctatgactcctatgcgaacacctcaaagaaccccttcaactaagcaagacgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43714" stop="42608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43414" g_stop="42908" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E308771" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43414" e_stop="42908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCAT</genome_strand>
        <mrna_strand>AGATGTCCGTCAAAGGAATATAAAAAGGACAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAAGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCACGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335080" ref_strand="+" ref_description="SGN-E335080 [cTOE-1-A13]">
      <seq>atagatgtccgtcaaaggaagagaaaaaggagaggtattgattacaatgctgaaattccctttgaaaagaagcctcctccaggtttctatgatgtcactgaggaagaccgtccagttgatcaacctaagtttccaactaccattgaggaactagaaggtgaaaggagagtcgataacgaagctcaactaaggaagcaggatattgcgaggaacaaaattgcagagagacaggatgcccctacatccatattgcatgcgaacaaacttaatgatccagaagcagtgaagaagaggtcgaaactgaatcttccagcaccacagattccagatcatgaattggaggccatagcaaagataggtattgccagtgatctaattgggggagatgaactgtccgaagggaatgctgcaacgcgtgctcttcttgcaaattatgcccagacaccacaacatgctatgactcctatgcgaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43716" stop="42641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43416" g_stop="42941" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E335080" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43416" e_stop="42941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACC</genome_strand>
        <mrna_strand>ATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAACGAAGCTCAACTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAAGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580389" ref_strand="+" ref_description="SGN-E580389 [5632]">
      <seq>gaaagccagagcaaaagcagcttgaagaggcgcgaaggcttgcttctttacagaagaggagagaactcaaggctgctggaatagatgcccggcaagaggaagcagcaaacaaggagaggtattgattacaatgctgaaatcccctttgaaaagaagcctcctccaggtttctatgatatcactgaggaagatcgtccagttgatcaacctaagtttccaagctaccattgaggaactggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43795" stop="42960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43495" g_stop="43260" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E580389" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43495" e_stop="43260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCCAGAG-AAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAA-AGGAAG-AG-AAA-AAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAA-CTACCATTGAGGAACTAGAAG</genome_strand>
        <mrna_strand>GAAAGCCAGAGCAAAAGCAGCTTGAAGAGGCGCGAAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTCAAGGCTGCTGGAATAGATGCCCGGCAAGAGGAAGCAGCAAACAAGGAGAGGTATTGATTACAATGCTGAAATCCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATATCACTGAGGAAGATCGTCCAGTTGATCAACCTAAGTTTCCAAGCTACCATTGAGGAACTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737978" ref_strand="+" ref_description="SGN-E737978 [LC11DF05]">
      <seq>caggaattcggcacgaggctcatcagcttcggagctaaaaaccgattccgaaatatcttctcgtcggagcggaaaaacgccgccgcggcctgaatctactctaccggagaccgtcatttctcgccggcgtatagatttcagctcatttacaggcaaaatctgaggtatacttatccaaaaccctagatttctcggagtctcccttgggagactgaaatagttagcaaacatgaggattatgataaagggaggagtatggaagaacacggaggatgagattctaaaggcggcggtgatgaagtatgggaagaatcagtgggctcgtatttcttctttacttgttcgtaaatctgctaagcagtgtaaagctcgctggtatgaatggctcgatccttcaattaagaagactgaatggactagagaggaggatgaaaaactacttcaccttgcaaaactcatgcctacccaatggaggacaattgcgccaatcgttggccgtacaccatcacaatgccttgaacgttatgagaagcttctcgatgcagcatgtactaaggatgagaactatgatcctaatgatgatccaagaaaattgaagcccggagagattgatcctaacccggaatcaaagcctgctcgtcctgatcctgttgatatggatgaggacgagaaagaaatgctttctgaagcacgggctaggttggccaacacaagaggcaagaaggctaaaaggaaagccagagaaaagcagcttgaagaggcgcggaggcttgcttctttacagaagaggagagaactgaaggctgctggaatagatgtccgtcaaaggaagagaaaaaggagaggtattgattacaatgctgaaaattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="45460" stop="43057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45156" g_stop="44769" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="406" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43821" g_stop="43357" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="872" r_length="466" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E737978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45156" e_stop="44769"/>
          <exon e_start="43821" e_stop="43357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAGGTCAGTTTTTTATTCTCTATTGAATTAAGCTTGTTTGTGAGTCATATCCTACTGTTGTTTGGTAGCTAGTAGATACATGTACAAGTTATGAGATAAATTGTTTTGTTATCTTATTGGCCTGCATTACTTACCAAATGAGTTTGTTCATATGTTTTGGTAAAAGGTTATATGAAAACTGTTTTTGATTGGTAACTTTTGCTGTGGAGAGGGTATAACAGTAGGTGACATATGCTCATAGTACCAGCTGCATGATAGGTATGAGGATAGGTTTGAATGTTAGATTTTGCGAATCATTGTTCAAGTGCCAAGGTAGGGGTAAGGTCTGCGTGGACTATACCATCAAAAGGAGACCACAAGTGGGATTATACCGGGCATGTTGTTGTAATTTTCAATTGTTGATTCAAAAGAGTGGCAGGAAGTGTGTGTTAAAGATGTCCGAGAAGGAAACTAGTTAGTGTGGAAGTTATTTTCCTCCAAAATTGAGTAAAATACTTCTCATTTCAGACCCTGACAACCAAATATATAACATTCTAGTTCACTGGGTGTTGGTTCTTTTTTCTTGCTTAGTTTAATGCGACATGCGAGTTATCTTTTTTTGTTATGTGTGACACCGTTATGTATTTGTTGATAGCTGTCACATTTCAGATTTCATCCTATTCCATTGTGAACTAGAGAAGTTCTGTTTTGTGAGCATACTGTGGCTTTGCACCAGTTTGTTTTTGGCTTGATTATTGGCATGCAAGATCTGAAACTAGTTTTCTGTGTGGAGATTTCTGTCTGAGTTTTTCCAATCTTTTTCTATTATTCCGTTTATCAATGACAGCTAATGATTTTCTGAATAGAGAAAGTGGAGAAGTCACAGTTTTTCAAGTTTACCTCAAGACTGGTAGGAACTTATGTTTTAGCTTAACCACTTCTTGACACAACTTACTGCTATTTTCTTCCAGACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTG-AAATTCCC</genome_strand>
        <mrna_strand>CTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAAATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740016" ref_strand="+" ref_description="SGN-E740016 [LC19CH12]">
      <seq>ccattaatggaatctcatcagcttcggagctaaaaaccgattccgaaatatcttctcgtcggagcggaaaaacgccgccgcggcctgaatctactctaccggagaccgtcatttctcgccggcgtatagatttcagctcatttacaggcaaaatctgaggtatacttatccaaaaccctagatttctcggagtctcccttgggagactgaaatagttagcaaacatgaggattatgataaagggaggagtatggaagaacacggaggatgagattctaaaggcggcggtgatgaagtatgggaagaatcagtgggctcgtatttcttctttacttgttcgtaaatctgctaagcagtgtaaagctcgctggtatgaatggctcgatccttcaattaagaagactgaatggactagagaggaggatgaaaaactacttcaccttgcaaaactcatgcctacccaatggaggacaattgcgccaatcgttggccgtacaccatcacaatgccttgaacgttatgagaagcttctcgatgcagcatgtactaaggatgagaactatgatcctaatgatgatccaagaaaattgaagcccggagagattgatcctaacccggaatcaaagcctgctcgtcctgatcctgttgatatggatgaggacgagaaagaaatgctttctgaagcacgggctaggttggccaacacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="45468" stop="43214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45169" g_stop="44769" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43821" g_stop="43514" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="709" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E740016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45169" e_stop="44769"/>
          <exon e_start="43821" e_stop="43514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTAATGGAATCTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAGGTCAGTTTTTTATTCTCTATTGAATTAAGCTTGTTTGTGAGTCATATCCTACTGTTGTTTGGTAGCTAGTAGATACATGTACAAGTTATGAGATAAATTGTTTTGTTATCTTATTGGCCTGCATTACTTACCAAATGAGTTTGTTCATATGTTTTGGTAAAAGGTTATATGAAAACTGTTTTTGATTGGTAACTTTTGCTGTGGAGAGGGTATAACAGTAGGTGACATATGCTCATAGTACCAGCTGCATGATAGGTATGAGGATAGGTTTGAATGTTAGATTTTGCGAATCATTGTTCAAGTGCCAAGGTAGGGGTAAGGTCTGCGTGGACTATACCATCAAAAGGAGACCACAAGTGGGATTATACCGGGCATGTTGTTGTAATTTTCAATTGTTGATTCAAAAGAGTGGCAGGAAGTGTGTGTTAAAGATGTCCGAGAAGGAAACTAGTTAGTGTGGAAGTTATTTTCCTCCAAAATTGAGTAAAATACTTCTCATTTCAGACCCTGACAACCAAATATATAACATTCTAGTTCACTGGGTGTTGGTTCTTTTTTCTTGCTTAGTTTAATGCGACATGCGAGTTATCTTTTTTTGTTATGTGTGACACCGTTATGTATTTGTTGATAGCTGTCACATTTCAGATTTCATCCTATTCCATTGTGAACTAGAGAAGTTCTGTTTTGTGAGCATACTGTGGCTTTGCACCAGTTTGTTTTTGGCTTGATTATTGGCATGCAAGATCTGAAACTAGTTTTCTGTGTGGAGATTTCTGTCTGAGTTTTTCCAATCTTTTTCTATTATTCCGTTTATCAATGACAGCTAATGATTTTCTGAATAGAGAAAGTGGAGAAGTCACAGTTTTTCAAGTTTACCTCAAGACTGGTAGGAACTTATGTTTTAGCTTAACCACTTCTTGACACAACTTACTGCTATTTTCTTCCAGACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAG</genome_strand>
        <mrna_strand>CCATTAATGGAATCTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421433" ref_strand="+" ref_description="SGN-E421433 [STM-32-J22]">
      <seq>tggaatctcatcagcttcggagctaaaaagcgattccgaaatatcttctcgtcggagcggaaaaacgtcgccgcggcctgaatcttctctatcggagtctacgggaaacccttatttctcgacggtgtatagatttcagcacattgacagacaaaatctgaggtacacttctccaaaaccctagatttctcggagtctcccttgggagactgaaatagttagcaaacatgaggattatgataaagggaggagtatggaagaacacggaggatgagattctgaaggcggctgtgatgaagtatgggaagaatcagtgggctcgtatttcttctttgcttgttcgtaaatctgctaagcagtgtaaagctcgctggtatgaatggctcgatccttcaattaagaagactgaatggactagagaggaggatgaaaaactacttcaccttgcaaaactcatgcccactcaatggaggacaattgcgccaattgttggccgtacaccatcacagtgtcttgaacgttatgagaagcttctcgatgcagcatgtaccaaggatgagaactatgatcctaatgatgatccaagaaaattgaagcctggagagattgatcctaacccggaatccaagcctgctcgtcctgatcctgttgatatggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="45462" stop="43264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45162" g_stop="44769" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43821" g_stop="43564" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="662" r_length="258" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E421433" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45162" e_stop="44769"/>
          <exon e_start="43821" e_stop="43564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATCTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAG---AC-CGT----C--ATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAGGTCAGTTTTTTATTCTCTATTGAATTAAGCTTGTTTGTGAGTCATATCCTACTGTTGTTTGGTAGCTAGTAGATACATGTACAAGTTATGAGATAAATTGTTTTGTTATCTTATTGGCCTGCATTACTTACCAAATGAGTTTGTTCATATGTTTTGGTAAAAGGTTATATGAAAACTGTTTTTGATTGGTAACTTTTGCTGTGGAGAGGGTATAACAGTAGGTGACATATGCTCATAGTACCAGCTGCATGATAGGTATGAGGATAGGTTTGAATGTTAGATTTTGCGAATCATTGTTCAAGTGCCAAGGTAGGGGTAAGGTCTGCGTGGACTATACCATCAAAAGGAGACCACAAGTGGGATTATACCGGGCATGTTGTTGTAATTTTCAATTGTTGATTCAAAAGAGTGGCAGGAAGTGTGTGTTAAAGATGTCCGAGAAGGAAACTAGTTAGTGTGGAAGTTATTTTCCTCCAAAATTGAGTAAAATACTTCTCATTTCAGACCCTGACAACCAAATATATAACATTCTAGTTCACTGGGTGTTGGTTCTTTTTTCTTGCTTAGTTTAATGCGACATGCGAGTTATCTTTTTTTGTTATGTGTGACACCGTTATGTATTTGTTGATAGCTGTCACATTTCAGATTTCATCCTATTCCATTGTGAACTAGAGAAGTTCTGTTTTGTGAGCATACTGTGGCTTTGCACCAGTTTGTTTTTGGCTTGATTATTGGCATGCAAGATCTGAAACTAGTTTTCTGTGTGGAGATTTCTGTCTGAGTTTTTCCAATCTTTTTCTATTATTCCGTTTATCAATGACAGCTAATGATTTTCTGAATAGAGAAAGTGGAGAAGTCACAGTTTTTCAAGTTTACCTCAAGACTGGTAGGAACTTATGTTTTAGCTTAACCACTTCTTGACACAACTTACTGCTATTTTCTTCCAGACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAG</genome_strand>
        <mrna_strand>TGGAATCTCATCAGCTTCGGAGCTAAAAAGCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGTCGCCGCGGCCTGAATCTTCTCTATCGGAGTCTACGGGAAACCCTTATTTCTCGACGGTGTATAGATTTCAGCACATTGACAGACAAAATCTGAGGTACACTTCTCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTGAAGGCGGCTGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTGCTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCCACTCAATGGAGGACAATTGCGCCAATTGTTGGCCGTACACCATCACAGTGTCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACCAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCTGGAGAGATTGATCCTAACCCGGAATCCAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407868" ref_strand="+" ref_description="SGN-E407868 [PPI-8-F24]">
      <seq>tggaatctcatcagcttcggagctaaaaagcgattccgaaatatcttctcgtcggagcggaaaaacgtcgccgcggcctgaatcttctctatcggagtctacgggaaacccttatttctcgacggtgtatagatttcagcacattgacagacaaaatctgaggtacacttctccaaaaccctagatttctcggagtctcccttgggagactgaaatagttagcaaacatgaggattatgataaagggaggagtatggaagaacacggaggatgagattctgaaggcggctgtgatgaagtatgggaagaatcagtgggctcgtatttcttctttgcttgttcgtaaatctgctaagcagtgtaaagctcgctggtatgaatggctcgatccttcaattaagaagactgaatggactagagaggaggatgaaaaactacttcaccttgcaaaactcatgcccactcaatggaggacaattgcgccaattgttggccgtacaccatcacagtgtcttgaacgttatgagaagcttctcgatgcagcatgtaccaaggatgagaactatgatcctaatgatgatccaagaaaattgaagcctggagagattgatcctaacccggaatccaagcctgctcgtcctgatcctgttgatatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="45462" stop="43266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45162" g_stop="44769" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43821" g_stop="43566" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="660" r_length="256" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E407868" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45162" e_stop="44769"/>
          <exon e_start="43821" e_stop="43566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATCTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAG---AC-CGT----C--ATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAGGTCAGTTTTTTATTCTCTATTGAATTAAGCTTGTTTGTGAGTCATATCCTACTGTTGTTTGGTAGCTAGTAGATACATGTACAAGTTATGAGATAAATTGTTTTGTTATCTTATTGGCCTGCATTACTTACCAAATGAGTTTGTTCATATGTTTTGGTAAAAGGTTATATGAAAACTGTTTTTGATTGGTAACTTTTGCTGTGGAGAGGGTATAACAGTAGGTGACATATGCTCATAGTACCAGCTGCATGATAGGTATGAGGATAGGTTTGAATGTTAGATTTTGCGAATCATTGTTCAAGTGCCAAGGTAGGGGTAAGGTCTGCGTGGACTATACCATCAAAAGGAGACCACAAGTGGGATTATACCGGGCATGTTGTTGTAATTTTCAATTGTTGATTCAAAAGAGTGGCAGGAAGTGTGTGTTAAAGATGTCCGAGAAGGAAACTAGTTAGTGTGGAAGTTATTTTCCTCCAAAATTGAGTAAAATACTTCTCATTTCAGACCCTGACAACCAAATATATAACATTCTAGTTCACTGGGTGTTGGTTCTTTTTTCTTGCTTAGTTTAATGCGACATGCGAGTTATCTTTTTTTGTTATGTGTGACACCGTTATGTATTTGTTGATAGCTGTCACATTTCAGATTTCATCCTATTCCATTGTGAACTAGAGAAGTTCTGTTTTGTGAGCATACTGTGGCTTTGCACCAGTTTGTTTTTGGCTTGATTATTGGCATGCAAGATCTGAAACTAGTTTTCTGTGTGGAGATTTCTGTCTGAGTTTTTCCAATCTTTTTCTATTATTCCGTTTATCAATGACAGCTAATGATTTTCTGAATAGAGAAAGTGGAGAAGTCACAGTTTTTCAAGTTTACCTCAAGACTGGTAGGAACTTATGTTTTAGCTTAACCACTTCTTGACACAACTTACTGCTATTTTCTTCCAGACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATG</genome_strand>
        <mrna_strand>TGGAATCTCATCAGCTTCGGAGCTAAAAAGCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGTCGCCGCGGCCTGAATCTTCTCTATCGGAGTCTACGGGAAACCCTTATTTCTCGACGGTGTATAGATTTCAGCACATTGACAGACAAAATCTGAGGTACACTTCTCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTGAAGGCGGCTGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTGCTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCCACTCAATGGAGGACAATTGCGCCAATTGTTGGCCGTACACCATCACAGTGTCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACCAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCTGGAGAGATTGATCCTAACCCGGAATCCAAGCCTGCTCGTCCTGATCCTGTTGATATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745182" ref_strand="+" ref_description="SGN-E745182 [GI|47105946]">
      <seq>ggaggaaaaccctaatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaaagcatttgagcctccaactcccacgtttacagaggaaggcgaagatgaaggacggatgatgaggatgggaaaaaggctgcttcgttctcttgcattagtttttggttgcatagctattgcatccttgggatatactggtctcctcaatcttatcgagtatgctggtggtttcatacctgtctttctgtacaataatcaggaattgcttgtaactggattcacagccatcgtgctttccatcatcgcatcttattacagatagtctaccttctacacttgttgaagaagagatgcagttgccttgtgttagctgtcaaattttgtaattctatttgttccagaaatttgccttgttttgtctataggatttgattgagcagcacttgtaaggatgcaccaagttctgaggattctaggattaaacaagaccacaatcttttcaaaattgatggatgttaatgtggagatataaatgataatgaggaggaaaggttagggcggatcaatccttcatttgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51339" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51040" g_stop="50867" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="286" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="391" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="469" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="525" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="583" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47709" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="706" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47708" i_stop="47567" i_length="142">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47566" g_stop="47471" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="802" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47470" i_stop="47304" i_length="167">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47303" g_stop="47232" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="874" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="47231" i_stop="46776" i_length="456">
            <donor d_prob="0.800" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46775" g_stop="46451" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="1199" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1200" polyA_stop="1209"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E745182" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1199</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51040" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47709"/>
          <exon e_start="47566" e_stop="47471"/>
          <exon e_start="47303" e_stop="47232"/>
          <exon e_start="46775" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACAGTAAGTATACTTAAAATAGCATTCCTGTCTTCTTCTGCTTGTGAATGCAATTGTATCTCCTAATCAACATTTCTTTCTCATATTTTGCAATATATAACATATTGCTTTTCAAGTGCATTCATCTTTTAGCTGCTTTTTTTAGGAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCCTTGGTATGTGTTCTGTCAGAGTAATGTTACCTGACTGTTCAATTTGTTGGTCCATCTGTAAAGTCACTTGAAAGAATCTGGTTTTGCTTTCTGAATCATCTCTCATCTTGGAATGTCCTACATATTTGTTGCCTTTTATTGAATTAAATCTCCGTTATTCATTTGTATAGGGATATACTGGTCTCCTCAATCTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAGGTAAGAGAAGATCCTCTCATTGCAATCTCTACCACCGCTGCACAAACAAAAGGCTTCACAGACCTTCACATATCACAGATAGAATAACAATGTTTTATCATCTTCTTCGACATTTTTGAGTCATATTCTCTGAATAGCTATGACTCCTCTTCATCTTATGAACAGCTAAAGAAAAAATTGCATTCAGTTAATATTACTTTGCCTAAACGAATTAAGGCTACATTAAGGGAGGGGAAACTTAGTTCTCAAATATCCTTTATGTTTTGCCCTCTTGCATATATTTTTTCGTGTATCCTGCTGTTTGCTTCTGTATACTTGTTGTTAGGGTTATAATGTTGAGTCCTCTTTTACCTCCATTCAACATGAATATGAAAAAATGAAGGCATTCATCCTTAGCTTTACCATGATTATTACCCCAATGCTTATCCGCGGTGTTAAATCTTTTTTCGCGTGCAGGAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAGATATAAATGATAATGAGGAGGAAAGGTTAGGGCGGATCAATCCTTCATTTGAAAAACA</genome_strand>
        <mrna_strand>GGAGGAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACA..............................................................................................................................................GAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCCTTG.......................................................................................................................................................................GGATATACTGGTCTCCTCAATCTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAGATATAAATGATAATGAGGAGGAAAGGTTAGGGCGGATCAATCCTTCATTTGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694020" ref_strand="+" ref_description="SGN-E694020 [LH_Ea02N10](-)">
      <seq>gcagggtgtcacctttggctcttttaaggtatctaaagaggtacgatatgctgataagcagcctattgtgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaaagcatttgagcctccaactcccacgtttacagaggaaggcgaagatgaaggacggatgatgaggatgggaaaaaggctgcttcgttctcttgcattagtttttggttgcatagctattgcatctttgggatatactggtctcctcaattttatcgagtatgctggtggtttcatacctgtctttctgtacaataatcaggaattgcttgtaactggattcacagccatcgtgctttccatcatcgcatcttattacagatagtctaccttctacacttgttgaagaagagatgcagttgccttgtgttagctgtcaaattttgtaattctatttgttccagaaatttgccttgttttgtctataggatttgattgagcagcagttgtaaggatgcaccaagttctgaggattctaggattaaacaagaccacaatcttttcaaaattgatggatgttaatgtggaaatataaatgataatcaaaaggaaaggttagggcggatcaatccttcattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="49711" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="84" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="142" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47831" g_stop="47709" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="265" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47708" i_stop="47567" i_length="142">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47566" g_stop="47471" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="361" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47470" i_stop="47304" i_length="167">
            <donor d_prob="0.826" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47303" g_stop="47232" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47231" i_stop="46776" i_length="456">
            <donor d_prob="0.800" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46775" g_stop="46451" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="757" r_length="324" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="767"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E694020" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47709"/>
          <exon e_start="47566" e_stop="47471"/>
          <exon e_start="47303" e_stop="47232"/>
          <exon e_start="46775" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACAGTAAGTATACTTAAAATAGCATTCCTGTCTTCTTCTGCTTGTGAATGCAATTGTATCTCCTAATCAACATTTCTTTCTCATATTTTGCAATATATAACATATTGCTTTTCAAGTGCATTCATCTTTTAGCTGCTTTTTTTAGGAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCCTTGGTATGTGTTCTGTCAGAGTAATGTTACCTGACTGTTCAATTTGTTGGTCCATCTGTAAAGTCACTTGAAAGAATCTGGTTTTGCTTTCTGAATCATCTCTCATCTTGGAATGTCCTACATATTTGTTGCCTTTTATTGAATTAAATCTCCGTTATTCATTTGTATAGGGATATACTGGTCTCCTCAATCTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAGGTAAGAGAAGATCCTCTCATTGCAATCTCTACCACCGCTGCACAAACAAAAGGCTTCACAGACCTTCACATATCACAGATAGAATAACAATGTTTTATCATCTTCTTCGACATTTTTGAGTCATATTCTCTGAATAGCTATGACTCCTCTTCATCTTATGAACAGCTAAAGAAAAAATTGCATTCAGTTAATATTACTTTGCCTAAACGAATTAAGGCTACATTAAGGGAGGGGAAACTTAGTTCTCAAATATCCTTTATGTTTTGCCCTCTTGCATATATTTTTTCGTGTATCCTGCTGTTTGCTTCTGTATACTTGTTGTTAGGGTTATAATGTTGAGTCCTCTTTTACCTCCATTCAACATGAATATGAAAAAATGAAGGCATTCATCCTTAGCTTTACCATGATTATTACCCCAATGCTTATCCGCGGTGTTAAATCTTTTTTCGCGTGCAGGAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAGATATAAATGATAATGAGGAGGAAAGGTTAGGGCGGATCAATCCTTCATTTGAAAAACA</genome_strand>
        <mrna_strand>GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTGTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACA..............................................................................................................................................GAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCTTTG.......................................................................................................................................................................GGATATACTGGTCTCCTCAATTTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCAGTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAAATATAAATGATAATCAAAAGGAAAGGTTAGGGCGGATCAATCCTTCA-TTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413059" ref_strand="-" ref_description="SGN-E413059 [STM-17-C16]">
      <seq>cattagtttttggttgcatagccattgcatccttgggatatactggtctcctcaattttatcgagtatgctggtggtttcatacctgtctttttgtacaacaatcaggaattgcttgtaactggattcacagccatcgtgcttcacatcattgcattttattacagatagtttaccctttacacttgttgaagaagagatgcagtttccttgtgttagctgtcaaattttgtaatttgttccagaaatttgccttgttttgtttataggattgaccagctgttgtaaggatgcaccaagttttgaggatggtaggattaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="47805" stop="46248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47505" g_stop="47471" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47470" i_stop="47304" i_length="167">
            <donor d_prob="0.826" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47303" g_stop="47232" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="107" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47231" i_stop="46776" i_length="456">
            <donor d_prob="0.800" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46775" g_stop="46548" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="325" r_length="218" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E413059" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413059" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47505" e_stop="47471"/>
          <exon e_start="47303" e_stop="47232"/>
          <exon e_start="46775" e_stop="46548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAGTTTTTGGTTGCATAGCTATTGCATCCTTGGTATGTGTTCTGTCAGAGTAATGTTACCTGACTGTTCAATTTGTTGGTCCATCTGTAAAGTCACTTGAAAGAATCTGGTTTTGCTTTCTGAATCATCTCTCATCTTGGAATGTCCTACATATTTGTTGCCTTTTATTGAATTAAATCTCCGTTATTCATTTGTATAGGGATATACTGGTCTCCTCAATCTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAGGTAAGAGAAGATCCTCTCATTGCAATCTCTACCACCGCTGCACAAACAAAAGGCTTCACAGACCTTCACATATCACAGATAGAATAACAATGTTTTATCATCTTCTTCGACATTTTTGAGTCATATTCTCTGAATAGCTATGACTCCTCTTCATCTTATGAACAGCTAAAGAAAAAATTGCATTCAGTTAATATTACTTTGCCTAAACGAATTAAGGCTACATTAAGGGAGGGGAAACTTAGTTCTCAAATATCCTTTATGTTTTGCCCTCTTGCATATATTTTTTCGTGTATCCTGCTGTTTGCTTCTGTATACTTGTTGTTAGGGTTATAATGTTGAGTCCTCTTTTACCTCCATTCAACATGAATATGAAAAAATGAAGGCATTCATCCTTAGCTTTACCATGATTATTACCCCAATGCTTATCCGCGGTGTTAAATCTTTTTTCGCGTGCAGGAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAG</genome_strand>
        <mrna_strand>CATTAGTTTTTGGTTGCATAGCCATTGCATCCTTG.......................................................................................................................................................................GGATATACTGGTCTCCTCAATTTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTTTGTACAACAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTCACATCATTGCATTTTATTACAGATAGTTTACCCTTTACACTTGTTGAAGAAGAGATGCAGTTTCCTTGTGTTAGCTGTCAAATTTTGT-A----ATTTGTTCCAGAAATTTGCCTTGTTTTGTTTATA-G----GATTGACCAGCTGTTGTAAGGATGCACCAAGTTTTGAGGATGGTAGGATTAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606360" ref_strand="+" ref_description="SGN-E606360 [22301]">
      <seq>ctttacagagaagagagtgttgaaagctcaaaaatggtgtntacaatatcatcaaacccagttcagtttacacatagtacttctttaatttctcaacccaatcgttatctgaaaagttctgttccagtttcaaatttatcattttcttgcttcagacatgagtacatcaggttttccgtaaaatctcaactgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttcgagtgatgactcaaatccttatgaggttttgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaagaagaaggaaagatgctgagcggaggggtgatgaagcaactcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacgaaaaggaagcagggtgtcacctttggctcttttaaggtatctaaagaggtacgatatgctgataagcagcctattgtgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaaaacatttgagcctccaactcccacgtttacagaggaaggtgaagatgaaggacggatgatgaggatggggaaaaaggctgctttcgtttctcttgcattagttttttgggtttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51297" stop="47188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51022" g_stop="50867" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="0.90"/>
            <acceptor a_prob="0.601" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="267" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="372" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="450" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="506" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="564" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47709" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="687" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47708" i_stop="47567" i_length="142">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47566" g_stop="47483" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="772" r_length="85" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E606360" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51022" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47709"/>
          <exon e_start="47566" e_stop="47483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACAGTAAGTATACTTAAAATAGCATTCCTGTCTTCTTCTGCTTGTGAATGCAATTGTATCTCCTAATCAACATTTCTTTCTCATATTTTGCAATATATAACATATTGCTTTTCAAGTGCATTCATCTTTTAGCTGCTTTTTTTAGGAGGAAGGCGAAGATGAAGGACGGATGATGAGGAT-GGGAAAAAGGCTGC-TTCG-TTCTCTTGCATTAGTTTTTGGTTGCATAGCT</genome_strand>
        <mrna_strand>CTTTA-CAGAGAAGAGAGTGTTGAAAGCTCAAAAATGGTGTNTACAATATCATCAAACCCAGTTCAGTTTACACATAGTACTTCTTTAATTTCTCAACCCAATCGTTATCTGAAAAGTTCTGTTCCAGTTTCAAATTTATCATTTTCTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAGTACATCAGGTTTTCCGTAAAATCTCAACTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCGAGTGATGACTCAAATCCTTATGAG..........................................................................................................GTTTTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGAAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACTCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACGAAAAGGAAGCAGGGTGTCACCTTTGGCTCTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTGTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAACATTTGAGCCTCCAACTCCCACGTTTACA..............................................................................................................................................GAGGAAGGTGAAGATGAAGGACGGATGATGAGGATGGGGAAAAAGGCTGCTTTCGTTTCTCTTGCATTAGTTTTT--TGGGTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321870" ref_strand="+" ref_description="SGN-E321870 [cTOB-29-O7]">
      <seq>gaaaaccctaatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaagcatttgagcctccaactcccacgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51336" stop="47410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51036" g_stop="50867" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="282" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="387" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="465" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="521" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="579" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47710" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="700" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E321870" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51036" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTAC</genome_strand>
        <mrna_strand>GAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATT-AAAGCATTTGAGCCTCCAACTCCCACGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263288" ref_strand="+" ref_description="SGN-E263288 [cLEG-62-K15]">
      <seq>aaaaccctaatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatatangatatttgagaaattaaaagcatttgagcctccaactcccacgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51335" stop="47410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51035" g_stop="50867" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="281" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="386" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="520" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="578" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47710" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="700" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E263288" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51035" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTAC</genome_strand>
        <mrna_strand>AAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATANGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479678" ref_strand="+" ref_description="SGN-E479678 [cSTD-10-N14]">
      <seq>gaaaaaccctaatccctttagcagagaagagagtgttgaaagctcaaaaatggtgtttacaatatcatcaaacccagttcagtttacacatagtacttctttaatttctcgacccaatcgttatctcaaaagttctgttccagtttcaaatttatcattttctttcttcagacatgaatacatcaggttttccgtaaaatctcaactgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttcgagtgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaagaagaaggaaagatgctgagcggaggggtgatgaagcaactcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacgaaaaggaagcagggtgtcacctttggctcttttaaggtatctaaagaggtacgatatgctgataagcagcctattgtgccatggggtccacggttcaccaaatctgatgacaaagatatcaagatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaaagcatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51337" stop="47430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51037" g_stop="50867" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="0.94"/>
            <acceptor a_prob="0.601" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="283" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="388" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="466" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="522" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="580" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47730" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="682" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E479678" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51037" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAG</genome_strand>
        <mrna_strand>GAAAAACCCTAATCCCTTTAGCAGAGAAGAGAGTGTTGAAAGCTCAAAAATGGTGTTTACAATATCATCAAACCCAGTTCAGTTTACACATAGTACTTCTTTAATTTCTCGACCCAATCGTTATCTCAAAAGTTCTGTTCCAGTTTCAAATTTATCATTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCCGTAAAATCTCAACTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCGAGTGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGAAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACTCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACGAAAAGGAAGCAGGGTGTCACCTTTGGCTCTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTGTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAGATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315176" ref_strand="+" ref_description="SGN-E315176 [cTOA-24-N19]">
      <seq>aatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatatangatatttgagaaattaaagcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51327" stop="47432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51027" g_stop="50867" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="273" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="378" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="456" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="512" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="570" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47732" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="669" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E315176" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51027" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTG</genome_strand>
        <mrna_strand>AATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATANGATATTTGAGAAATT-AAAGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328413" ref_strand="+" ref_description="SGN-E328413 [cTOC-21-J11]">
      <seq>tttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatatangatatttgagaaattaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51321" stop="47437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51021" g_stop="50867" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="267" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="372" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="450" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="506" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="564" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47737" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="659" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E328413" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51021" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGC</genome_strand>
        <mrna_strand>TTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATANGATATTTGAGAAATTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252020" ref_strand="+" ref_description="SGN-E252020 [cLEG-8-E18]">
      <seq>taaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51236" stop="47479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50936" g_stop="50867" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="182" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="287" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="365" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="421" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="479" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47779" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="532" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E252020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50936" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTT</genome_strand>
        <mrna_strand>TAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258148" ref_strand="+" ref_description="SGN-E258148 [cLEG-49-E11]">
      <seq>aaaaccctaatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51335" stop="47501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51035" g_stop="50867" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="281" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="386" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="520" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="578" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47801" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="609" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E258148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51035" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTG</genome_strand>
        <mrna_strand>AAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296592" ref_strand="+" ref_description="SGN-E296592 [cLET-39-K19]">
      <seq>aaaaccctaatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagctagggtttttataaatcgtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51335" stop="47503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51035" g_stop="50867" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="281" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="386" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="520" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="578" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47803" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="607" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E296592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51035" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGC</genome_strand>
        <mrna_strand>AAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTAGGGTTTTTATAAATCGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465138" ref_strand="+" ref_description="SGN-E465138 [cPRO-20-O11]">
      <seq>gaagagagtgttggaagctcaaaaatggtgtttacaatatcatcaaacccagttcagtttacacatagtacttctttaatttctcgacccaatcgttatctgaaaagttctgttccagtttcaaatttatcattttcttgcttcagacatgagtacatcaggttttccgtaaaatctcaactgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttcgagtgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaagaagaaggaaagatgctgagcggaggggtgatgaagcaactcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacgaaaaggaagcagggtgtcacctttggctcttttaaggtatctaaagaggtacgatatgctgataagcagcctattgtgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51299" stop="47510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51012" g_stop="50867" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="0.90"/>
            <acceptor a_prob="0.601" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="258" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="363" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="441" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="497" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="555" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47810" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="577" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E465138" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51012" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATC</genome_strand>
        <mrna_strand>GAAGAGAGTGTTGGAAGCTCAAAAATGGTGTTTACAATATCATCAAACCCAGTTCAGTTTACACATAGTACTTCTTTAATTTCTCGACCCAATCGTTATCTGAAAAGTTCTGTTCCAGTTTCAAATTTATCATTTTCTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAGTACATCAGGTTTTCCGTAAAATCTCAACTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCGAGTGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGAAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACTCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACGAAAAGGAAGCAGGGTGTCACCTTTGGCTCTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTGTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275085" ref_strand="+" ref_description="SGN-E275085 [cLEN-9-M5]">
      <seq>aatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51289" stop="49055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50989" g_stop="50867" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="235" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="340" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="418" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49355" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="470" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E275085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50989" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTC</genome_strand>
        <mrna_strand>AATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413058" ref_strand="+" ref_description="SGN-E413058 [STM-17-C16]">
      <seq>acccaatcgttatctgaaaagttctgttccagtttcaaatttatcattttcttgcttcagacatgagtacatcaggttttccgtaaaatctcaactgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttcgagtgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaagaagaaggaaagatgctgagcggaggggtgatgaagcaactcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacgaaaaggaagcagggtgtcacctttggctcttttaaggtatctaaagaggtacgatatgctgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51210" stop="49078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50926" g_stop="50867" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="0.90"/>
            <acceptor a_prob="0.601" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="172" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="277" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="355" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49378" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="384" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E413058" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50926" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAA</genome_strand>
        <mrna_strand>ACCCAATCGTTATCTGAAAAGTTCTGTTCCAGTTTCAAATTTATCATTTTCTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAGTACATCAGGTTTTCCGTAAAATCTCAACTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCGAGTGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGAAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACTCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACGAAAAGGAAGCAGGGTGTCACCTTTGGCTCTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471617" ref_strand="+" ref_description="SGN-E471617 [cSTB-24-L1]">
      <seq>gaagagagtgttggaagctcaaaaatggtgtttacaatatcatcaaacccagttcagtttacacatagtacttctttaatttctcgacccaatcgttatctgaaaagttctgttccagtttcaaatttatcattttcttgcttcagacatgagtacatcaggttttccgtaaaatctcaactgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttcgagtgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaagaagaaggaaagatgctgagcggaggggtgatgaagcaactcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacgaaaaggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51299" stop="49494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51012" g_stop="50867" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="0.90"/>
            <acceptor a_prob="0.601" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="258" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="363" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49794" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="416" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E471617" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51012" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCA</genome_strand>
        <mrna_strand>GAAGAGAGTGTTGGAAGCTCAAAAATGGTGTTTACAATATCATCAAACCCAGTTCAGTTTACACATAGTACTTCTTTAATTTCTCGACCCAATCGTTATCTGAAAAGTTCTGTTCCAGTTTCAAATTTATCATTTTCTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAGTACATCAGGTTTTCCGTAAAATCTCAACTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCGAGTGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGAAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACTCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACGAAAAGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746431" ref_strand="+" ref_description="SGN-E746431 [GI|47105023]">
      <seq>ggacaaacaagactatgaacattgctatggagcaataaaaattcaagaatccatatgaactttgaagaattcaaaaaccccagttggaaatagatcccctttttcaatttcaatttgaaaaagagaaaaaaaagtgatcttttttttttcttcactgtagtgtgatgagaatcagttttttacgatttggggttttgttcttgttgtgtaattgtttgattggagcttattgttccaaatctgatgaagcatatgtgacccttttgtatggcgatgagttcttgcttggggttcgagtacttggcaagtcgattagggatactggatcaaccaaagatatggtagttttggtctctgatggggtttctcaatatgccaaacatctactccaggcagatggttggattgtggagaaaattagcttactggcaaacccaaatcaagtgagaccgaagaggttttggggcgtctacacaaagctaaaaatatttaacatgaccacttacaagaaagtggtgtatcttgacgctgatactattgttgttaaaagcattgaagatctgtttaaatgtgggaagttctgtgcaaatttaaaacattctgagagactgaattctggagtcatggtggttgagccatcagaaaaagtttttaatgatatgatgagcaaggtgaccactttgccttcttacactggaggtgatcaaggttttctcaactcctactatgttgggtttgctaatgctcaggtttatgagccaaatttgccgtcagatgtcttaaattccagaaaggttccagaaatggagagactttctactctttacaatgcagatgttggcctctacatgcttgctaacaagtggatggtggatgaaaaagaacttcgagttattcattacacacttggcccgcttaaaccgtgggattggtggacgtcttggctgttaaaacctgttgatgtctggcagaatgtcagggtacaacttcaagaatctctacctggaactagaggcggcaaaaattccagagatgaacttcttgtcaaatttctttatttgcttccattgcttctgatagcattttgttactatcggtcgttcttacagacacaatcactatggcaccatatcagacaaatgtactacaaggtcagaggaggtgtcctagcttatgcctctgttcctccatctgccatcagctccaaccagcagttcccaaatggtatgcagttgaagatgcctacttatctgggtgcggtatctgtctgtgtctgttttgctgctgctcttgtgtcccttggtcttccacttttaatcattccgcgccaagtaatgccatggactggtctcctccttatgtacgaatggacatttacacttttcttcctcttgttcggaagttatctgcacttagtttatcagtggggaagggttgcggcaaatcaacctggtcaatttccggctcatcctgtatctttggattatgaacctggaaaaggtcatcagcggcaacaatcatgttgtgacaatgaagcatggtactatgggttagggatggcatttcttgccattgcagccccagcattgcctggtgtttttggagtcacttctttgtttttgaggttaggtttgatggtcgtaggcggccttattttgacgtccttcatgacatatgcttcagagcatctatcgattagatcattcgcgaggggctttgaagaaaggaacacaccaaggagtaggagtgtgtgtttcttatgttgatcatgtcaatatttttggttttagcttaactacaagcaatcatcttcttgatctcatttgtaacttgttttgacatattcttcctagtgaaaatatgtagaatatgttgggaaatcatttatttactaatgtgatttttatttttttgttaaggttaaaaaggtgtatgttttctgtatatgcttcttaaattttttgattgatatggatgaggattattgatcaattctcaagtgtttggaacacttccatactggtagtcaatagtatatactcatttttgtagcttctttctcctttgatttatgtaaatatttatgataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="59528" stop="66904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59827" g_stop="60219" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60220" i_stop="61630" i_length="1411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61631" g_stop="61751" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="513" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61752" i_stop="62404" i_length="653">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62405" g_stop="62590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="699" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62817" g_stop="62980" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="863" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63767" g_stop="63874" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="971" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64125" g_stop="64262" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="972" r_stop="1109" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64263" i_stop="64340" i_length="78">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64341" g_stop="64445" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1214" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64446" i_stop="64679" i_length="234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64680" g_stop="64965" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1215" r_stop="1500" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="65057" g_stop="65180" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1501" r_stop="1624" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66139" g_stop="66601" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1625" r_stop="2086" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2087" polyA_stop="2103"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E746431" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2088</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59827" e_stop="60219"/>
          <exon e_start="61631" e_stop="61751"/>
          <exon e_start="62405" e_stop="62590"/>
          <exon e_start="62817" e_stop="62980"/>
          <exon e_start="63767" e_stop="63874"/>
          <exon e_start="64125" e_stop="64262"/>
          <exon e_start="64341" e_stop="64445"/>
          <exon e_start="64680" e_stop="64965"/>
          <exon e_start="65057" e_stop="65180"/>
          <exon e_start="66139" e_stop="66601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAAACAAGACTATGAACATTGCTATGGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAGAAAAAAAAAGTGATCTTTTTTTTTTCTTCACTGTAGTGTGATGAGAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGTGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCGAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGTAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAGGTAGGTTTTGATTGTACTCTGATCAAAGTTATTTTTGAGTAATACTGAATAGTAGTACAAGAACATAAACCCCTTGATCCCGAACTAGTTGAGGTTGGCTGTATGAATCTTATTTTAATTTGTTTCATTTGGAGCCATATCAGAAACTCAATTATAGTTTTTTGATAAGATTGAGCTGGGAGATGTGAAGACCGTTGAATTGTTCTTGTTCTAGGACTAATGAATTCATTTTTTCGCCTTGTATGTGTTTGCTTATAAGAACATAAACCCCTTGATTCCAAACTAGTTGGGGTCAACTATATGAATTGTTTCGTTCTGTTTCGTTTGGATCCGTATGGGATACTCAATTATAGGAATAACTTCATTATACGGATGAAATGGTAGTTTTTTATAAGCTTGAGCTGGGAATTGTTAAGGCAGTTGATTTGTCATTGTTCTAGGAAAATATTTGCTTGCTTATTGAGGAATACTTAGTAATACTAGAAGAAAATAAACCCCTTGATCCCAAACTAGTTGGGGTCAACTACATGAATCCATTTCGTGCTGTTTCATTTGGATCCATTTTGGATATTCAACTACAGAGACATCTCTCTACCGTTTAAAGGTAGTGGTAAGGTCTGCACACATCTTACCAATCCCAGATCCCTCTAGGTATGTTGCTCTTGAGCTGGGAAATATAAAGCTAGCTGATTTGTTATTGTTGTTGAGCTGGGAAATGTAAAGTTAGCTGATTTGTTATTGTTTTAGGACCAATAAGTTCAACTTTTTATGTGCTTGCATGTTAAGAATAACTCAGTATTGAATCCAAGAGGATGACTCAGTGTTTGAGCCATAAGAGAAAAACCTGGTGATTCAGTGTGTAAGCCCATCTATCCAGCTTCCGTGAGCAGGTTTTTCCCATCACTTGAAATGTGGGTTTTAGCTGATTGCCTTGTGGATTAGTGAAAGTACACACAAGCTGAGCCATAAATATAAATTGTTAGAAAAAGAAAGTTCACTTCCTCATGGGTATTCTAGAGTGTAAATTGATGAATGTTAAGTCAATTGCTTTATTAGTGATCTAGGACTAGTATAAGTGAATATTAAAATCTAAGTCGAGTGCTGCTCAATTGTTAGAAGTAGTAAACTGGGTCTATCTTGAAGATATGTTCTTTTTTCTATTCCGAAACTAAATTACTTTGCACTCTTTCCAGTCGGTAAAAGCAAATTGTAAAAGTGGTACCCGTGAATTGTGGTTTACTTTGCCTGGGTGAAGTCCTATTATAGTCTTTGTTTTAGCTGTTATTCTTTATTGTAAAATTTATTCATAAATTAATTGTCAATCTTTTTGTTTATTATGTATAGCTATTTCTAAGCGGTGCTTACTTTCCTGCTAAAATGGTTGTTTTGATGTTTGGTTTCTTTCTTACAGGCAGATGGTTGGATTGTGGAGAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAGAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAGAAAGGTAATTCAATGTGTCAAACTTCAACCTAAATGCTAAAGAAAGAAAGGGATGTAAAATAGAACCTTGGATATTTCTTAGGTGTTTCTTAACTTTGGCTTGATGTAGTTATTGTGTTCTTGATGATTTCCGCCATTCTATGTCCTGTTATATAATGGATTGTATAAATGGTCTAATTTATTTCAGTTTTCTTCTTCCAATTATATTCCTTTACTTCAAACGTATCAGCCTGTTTTTTAAAAACTGATGTAGCTGCAAGTACATCTAGTATGTAATTGTACCAAGAGTAAAAAAAAAATAGGTGAATATATCTGAAGACTAAGAGAACCATGTTCGGCTTCTATAAAACTTTAGATGTAATGTGTCTTGAGCAATTGCAACAGCAACAATAACATACCCAGTGTAATCATAGGTGGCTCGAGCTATGCGTGTACTACCAGGCTCTAGGCTTTAGTACAATTAAGTCATCTCTTGTGTATGCTGTTTAAGGGAAAAGCGATGGGTATGTGAAAGATAGAGACCTAGCTTATTTCATTACCTGAATATTTCAAACAGATATCTCATTACTCCTGTAGTTCTCTTTTCTGCTAAGCATTATGCATATGGTTTTCTGACTTGTAGACCTTATTCTTGCCATTTCTCCCTTGTTTTGGCAGTGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAGGTACTGTTTAGCTGTGAACTGCTTTGGTTTTAAGGTTATATGTTGTCATCACATCTTTCTATAGTCCAACTTATGTTTCTATTGAAAGATTTTATCTTTTATCATCTAATAATTTTAGTGAGATATTTTACTAGTTCTGATAGTTCGTTGCACAGATTGTTTTTTCCATTGTCCTAATGGTGAAAATATTTGTGTTTGATAATTGTTGTTGATTCTCTTCTAACAGGTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAGGTATGTTTAGGTGCAAGAGACTGTCCTTTCTTTGAGTGTGTTTTTAGTTGGTTGGTTTGTGGTGTGTAGGCTTTAGCATTTGATGAAATATGGACCAAATACAGTTAGTTTTTACACTCTTGGGCAAGCTTTAGTGCTTTCCTGGACCCCGCACACTGCGGGAGCGTTAATGCACCAGCCTGCCCCTTTACTCTTAAAAGGAAGGATTAAAGCTGCCATTTTTGTTAATATAGGAAAAGAAGAAAAAGTTGACTTTCATGGGATTGAAATATGCTGCTGTAGTATAGGCTATAGCAATTAGTTATCAACAATTAGTGAAATTTGATTGGTTCATACTATATATTTTATCCATAGAATAGTCTTTCCATGGAGAGAAGAATTTTAGAGAAAGCTGCACAAACTATTTAGGAGAACGTGCTGCTAAATGTGCATGGTATTAATAGAAGGTAGTCAATGAAGATATTTTGGATGGCCAGAGATAAGAGAGGAAAAGCCTAATGCTTGGTACCTTCCACCTCAAACCATAAAGTGGGAATGGATCATTGTCTGACTCTTGTTTTCTTTGGAGGACTGAACTCGTTGGTCTTGCCATGGGGCGTGTACCATATCCCAGAAAAAAAAGAGAAGATTTTCTTGGATTACGGGAAGTATTTTCCTGCTGAAACAAATGAGAAGGTTTCATATTAGATGAACATAGGCAATTGTTTGCAATAGATATTTTCGGAAGTGCATTAAATTTGCTTCCTTGTTTTGACCTTTATCTTTTCATAATTGATGTATCTGCAGTGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAGGTATTCTTGGTCTTCTCTCCTCCAGCTGTTGCTAGTGCTCTTTGCATTCTCCAAATGTGGTCGTCTTTTTCCTGCACTAGGATGCTCCCTGGTTCTATCCCACACCCATCATAAAAACCTTTTTTTGTGTCTTCGTGGAAGCTTTTTTTTCCATCTTGAAGATAAGGATGTCTTTAGATGTGGAAAAGGAGGACTTTTGTACTTGCCAATACAAGATTGTGTGACTTTCCTATGTTTGCCTATGCTGCAGAATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAGGTTGGTGATTTTAAAAAGAGTTAATTACTTAGCCATTAGTCAAAAATTTGAAATATTTCTAAAAGATGGCTTCTGCAGACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAGGTACATCTCTCCTTCCTCTCAGTTGTTGAGTCTTCAACATCCTGATTAAGTTTTGCTCCTTCCTTTCACTATTCATAAATTGGTTATCTTAGAATGCAGAGGCCTTAAATTCTTGCCTTCATATTGACATATTTTGGCTGCTGAAATTAATGACCATATTTCTACCATAATATTGATTTACTTATTGATAAATTTATGTTGCTTTTTCTCACATAATCTTAAAATGATAAACAGTTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAGGTTCGTTCATTTTACCAGATCACCGAATTCTATTTTACTAAATTTGTCGGTGCTTTTCTTCAGTGTTGCTGCCTACTTTTTTGCTTTGTAGGTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAGGTACTCCCAACAGGATTTCTGCATTTCAATGAATTTTGTGTCATTTGGTTGTTGTCTATTCGAGCTGGATTTGAATTACGTGATAGCAGTTGGTGTCTACTTGCCATGTGGTTTCTTGGTTTCACCTATAAAACTAGAATCTCTCAAGTATCTATACATGTGTAGTTATAAGTTATATTGCAATATATATTTAAATGGACTCCTAATCACATCTTTAACTCATTCATGAATAAGAAAGAAATAATACGGGCGAGAAAAGACCAAGTAAATTCAGGCTTTTAAAGTTAATTCAGAATTTCGCATATGTTATATTTTGAAGGCCCAGTAAGCCTAAAAGAGGCTTTAGCAACCATTCTTATTAGACGACTGTCTCATATATTCCTCTTATGTTATCGTAGTGAATTGCTTTATATCCTATATTTTGCCGTCTTATTTTCTTATAAAATTGTGCTTCAAATTCTTCTTTTCTTTTGAACCGAGGGTCTATCGCAAACCACCTTTCTACCCACAAGGGTAGGGGTAGGATTTGCATACATCCTACCCTCCCCGACCATCCTCGTAGGATTGCACTGGATTTGTTAGCATAGTGTAGCTTCAACAACATTGCTGGGTTGTTATGTAAGCCATCTTCTATGACCGCGTAGCGTCACATATTCTGACAAATTCTATGAATCCTTAACTTTTTGGTGCTTGTTTTCTTTTATAGTTTCATCACTCAGGTAGAATTTCTTGGTGATGCTGTTGGCTTCTCCGAACGTCCAATTTCTCACCCTCTCCTTTGTTTTCTTGTCCGTCTTTACAAATACCTCTTGTTGTGATTAGGCACTAGAATATCTTTGACGTAAATAGTCAAAGAATATCTCCCGGGTAGACATTGGTTGAATACGAATATTCATATGATGTGATGGAAGTGAAACATCTACGGAACGTAACGTTTCGTTCTTATGTTTTTCCACAGGTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGTATATGCTTCTTAAATTTTTTGATTGATATGGATGAGGATTATTGATCAATTCTCAAGTGTTTGGAACACTTCCATACTGGTAGTCAATAGTATATACTCATTTTTGTAGCTTCTTTCTCCTTTGATTTATGTAAATATTTATG</genome_strand>
        <mrna_strand>GGACAAACAAGACTATGAACATTGCTATGGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAG-AAAAAAAAGTGATCTTTTTTTTTTCTTCACTGTAGTGTGATGAGAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGTGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCGAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGTAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGGTTGGATTGTGGAGAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAGAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG..................................................................................................................................................................................................................................GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAG..........................................................................................................................................................................................................................................................AATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAG..............................................................................ACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAG..........................................................................................................................................................................................................................................TTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG...........................................................................................GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTA-TTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGTATATGCTTCTTAAATTTTTTGATTGATATGGATGAGGATTATTGATCAATTCTCAAGTGTTTGGAACACTTCCATACTGGTAGTCAATAGTATATACTCATTTTTGTAGCTTCTTTCTCCTTTGATTTATGTAAATATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705623" ref_strand="+" ref_description="SGN-E705623 [FA27CG04]">
      <seq>ggagcaataaaaattcaagaatccatatgaactttgaagaattcaaaaaccccagttggaaatagatcccctttttcaatttcaatttgaaaaagagaaaaaaaaagtgatcttttttttttcttcactgaagggggatgaaaatcagttttttacgatttggggttttgttcttgttgggtaattgtttgattggagcttattgttccaaatctgatgaagcatatgtgacccttttgtatggcgatgagttcttgcttggggttcaagtacttggcaagtcgattagggatactggatcaaccaaagatatggaagttttggtctctgatggggtttctcaatatgccaaacatctactccaggcaaatggttggattgtggaaaaaattagcttactggcaaacccaaatcaagtgagaccgaaaaggttttggggcgtctacacaaagctaaaaatatttaacatgaccacttacaaaaaaggggggtatcttgacgctgatactattgttgttaaaagcattgaaaatctgtttaaatgtgggaagttctgtgcaaatttaaaacattctgagagactgaattctggagtcatgggggttgagccatcaaaaaaagtttttaatgatatgatgagcaaggtgaccactttgccttcttacactggaggtgatcaaggttttctcaactcctactatgttgggtttgctaatgctcaggtttatgagccaaatttgccgccagatgtcttaaattccaaaaaggttccaagaaatggagagactttctactctttacaatgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="59555" stop="63252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59855" g_stop="60219" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60220" i_stop="61630" i_length="1411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61631" g_stop="61751" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="486" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61752" i_stop="62404" i_length="653">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62405" g_stop="62590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="672" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62817" g_stop="62952" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="809" r_length="137" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E705623" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59855" e_stop="60219"/>
          <exon e_start="61631" e_stop="61751"/>
          <exon e_start="62405" e_stop="62590"/>
          <exon e_start="62817" e_stop="62952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAGAAAAAAAAAGTGATCTTTTTTTTTTCTTCACTGTAGTGTGATGAGAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGTGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCGAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGTAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAGGTAGGTTTTGATTGTACTCTGATCAAAGTTATTTTTGAGTAATACTGAATAGTAGTACAAGAACATAAACCCCTTGATCCCGAACTAGTTGAGGTTGGCTGTATGAATCTTATTTTAATTTGTTTCATTTGGAGCCATATCAGAAACTCAATTATAGTTTTTTGATAAGATTGAGCTGGGAGATGTGAAGACCGTTGAATTGTTCTTGTTCTAGGACTAATGAATTCATTTTTTCGCCTTGTATGTGTTTGCTTATAAGAACATAAACCCCTTGATTCCAAACTAGTTGGGGTCAACTATATGAATTGTTTCGTTCTGTTTCGTTTGGATCCGTATGGGATACTCAATTATAGGAATAACTTCATTATACGGATGAAATGGTAGTTTTTTATAAGCTTGAGCTGGGAATTGTTAAGGCAGTTGATTTGTCATTGTTCTAGGAAAATATTTGCTTGCTTATTGAGGAATACTTAGTAATACTAGAAGAAAATAAACCCCTTGATCCCAAACTAGTTGGGGTCAACTACATGAATCCATTTCGTGCTGTTTCATTTGGATCCATTTTGGATATTCAACTACAGAGACATCTCTCTACCGTTTAAAGGTAGTGGTAAGGTCTGCACACATCTTACCAATCCCAGATCCCTCTAGGTATGTTGCTCTTGAGCTGGGAAATATAAAGCTAGCTGATTTGTTATTGTTGTTGAGCTGGGAAATGTAAAGTTAGCTGATTTGTTATTGTTTTAGGACCAATAAGTTCAACTTTTTATGTGCTTGCATGTTAAGAATAACTCAGTATTGAATCCAAGAGGATGACTCAGTGTTTGAGCCATAAGAGAAAAACCTGGTGATTCAGTGTGTAAGCCCATCTATCCAGCTTCCGTGAGCAGGTTTTTCCCATCACTTGAAATGTGGGTTTTAGCTGATTGCCTTGTGGATTAGTGAAAGTACACACAAGCTGAGCCATAAATATAAATTGTTAGAAAAAGAAAGTTCACTTCCTCATGGGTATTCTAGAGTGTAAATTGATGAATGTTAAGTCAATTGCTTTATTAGTGATCTAGGACTAGTATAAGTGAATATTAAAATCTAAGTCGAGTGCTGCTCAATTGTTAGAAGTAGTAAACTGGGTCTATCTTGAAGATATGTTCTTTTTTCTATTCCGAAACTAAATTACTTTGCACTCTTTCCAGTCGGTAAAAGCAAATTGTAAAAGTGGTACCCGTGAATTGTGGTTTACTTTGCCTGGGTGAAGTCCTATTATAGTCTTTGTTTTAGCTGTTATTCTTTATTGTAAAATTTATTCATAAATTAATTGTCAATCTTTTTGTTTATTATGTATAGCTATTTCTAAGCGGTGCTTACTTTCCTGCTAAAATGGTTGTTTTGATGTTTGGTTTCTTTCTTACAGGCAGATGGTTGGATTGTGGAGAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAGAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAGAAAGGTAATTCAATGTGTCAAACTTCAACCTAAATGCTAAAGAAAGAAAGGGATGTAAAATAGAACCTTGGATATTTCTTAGGTGTTTCTTAACTTTGGCTTGATGTAGTTATTGTGTTCTTGATGATTTCCGCCATTCTATGTCCTGTTATATAATGGATTGTATAAATGGTCTAATTTATTTCAGTTTTCTTCTTCCAATTATATTCCTTTACTTCAAACGTATCAGCCTGTTTTTTAAAAACTGATGTAGCTGCAAGTACATCTAGTATGTAATTGTACCAAGAGTAAAAAAAAAATAGGTGAATATATCTGAAGACTAAGAGAACCATGTTCGGCTTCTATAAAACTTTAGATGTAATGTGTCTTGAGCAATTGCAACAGCAACAATAACATACCCAGTGTAATCATAGGTGGCTCGAGCTATGCGTGTACTACCAGGCTCTAGGCTTTAGTACAATTAAGTCATCTCTTGTGTATGCTGTTTAAGGGAAAAGCGATGGGTATGTGAAAGATAGAGACCTAGCTTATTTCATTACCTGAATATTTCAAACAGATATCTCATTACTCCTGTAGTTCTCTTTTCTGCTAAGCATTATGCATATGGTTTTCTGACTTGTAGACCTTATTCTTGCCATTTCTCCCTTGTTTTGGCAGTGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAGGTACTGTTTAGCTGTGAACTGCTTTGGTTTTAAGGTTATATGTTGTCATCACATCTTTCTATAGTCCAACTTATGTTTCTATTGAAAGATTTTATCTTTTATCATCTAATAATTTTAGTGAGATATTTTACTAGTTCTGATAGTTCGTTGCACAGATTGTTTTTTCCATTGTCCTAATGGTGAAAATATTTGTGTTTGATAATTGTTGTTGATTCTCTTCTAACAGGTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCC-AGAAATGGAGAGACTTTCTACTCTTTACAATGCAGA</genome_strand>
        <mrna_strand>GGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAGAAAAAAAAAGTGATCTTTTTTTTTTCTTCACTGAAGGGGGATGAAAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGGGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCAAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGAAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGGTTGGATTGTGGAAAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAAAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAAATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGGGGTTGAGCCATCAAAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG..................................................................................................................................................................................................................................GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGCCAGATGTCTTAAATTCCAAAAAGGTTCCAAGAAATGGAGAGACTTTCTACTCTTTACAATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244257" ref_strand="+" ref_description="SGN-E244257 [cLEF-37-O17]">
      <seq>aagtggtgtatcttgacgctgatactattgttgttaaaagcattgaagatctgtttaaatgtgggaagttctgtgcaaatttaaaacattctgagagactgaattctggagtcatggtggttgagccatcagaaaaagtttttaatgatatgatgagcaaggtgaccactttgcctttttacactggaggtgatcaaggttttcttaactcctactatgttgggtttgctaatgctcaggtttatgagccaaatttgccgtcagatgtcttaaattccagaaaggttccagaaatggagagactttctactctttacaatgcagatgttggcctctacatgcttgctaacaagtggatggtggatgaaaaagaacttcgagttattcattacacacttggcccgcttaaaccgtgggattggtggacgtcttggctgttaaaacctgttgatgtctggcagaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="62103" stop="64174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62402" g_stop="62590" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62817" g_stop="62980" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="353" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63767" g_stop="63874" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="461" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64125" g_stop="64131" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="468" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E244257" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62402" e_stop="62590"/>
          <exon e_start="62817" e_stop="62980"/>
          <exon e_start="63767" e_stop="63874"/>
          <exon e_start="64125" e_stop="64131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAGGTACTGTTTAGCTGTGAACTGCTTTGGTTTTAAGGTTATATGTTGTCATCACATCTTTCTATAGTCCAACTTATGTTTCTATTGAAAGATTTTATCTTTTATCATCTAATAATTTTAGTGAGATATTTTACTAGTTCTGATAGTTCGTTGCACAGATTGTTTTTTCCATTGTCCTAATGGTGAAAATATTTGTGTTTGATAATTGTTGTTGATTCTCTTCTAACAGGTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAGGTATGTTTAGGTGCAAGAGACTGTCCTTTCTTTGAGTGTGTTTTTAGTTGGTTGGTTTGTGGTGTGTAGGCTTTAGCATTTGATGAAATATGGACCAAATACAGTTAGTTTTTACACTCTTGGGCAAGCTTTAGTGCTTTCCTGGACCCCGCACACTGCGGGAGCGTTAATGCACCAGCCTGCCCCTTTACTCTTAAAAGGAAGGATTAAAGCTGCCATTTTTGTTAATATAGGAAAAGAAGAAAAAGTTGACTTTCATGGGATTGAAATATGCTGCTGTAGTATAGGCTATAGCAATTAGTTATCAACAATTAGTGAAATTTGATTGGTTCATACTATATATTTTATCCATAGAATAGTCTTTCCATGGAGAGAAGAATTTTAGAGAAAGCTGCACAAACTATTTAGGAGAACGTGCTGCTAAATGTGCATGGTATTAATAGAAGGTAGTCAATGAAGATATTTTGGATGGCCAGAGATAAGAGAGGAAAAGCCTAATGCTTGGTACCTTCCACCTCAAACCATAAAGTGGGAATGGATCATTGTCTGACTCTTGTTTTCTTTGGAGGACTGAACTCGTTGGTCTTGCCATGGGGCGTGTACCATATCCCAGAAAAAAAAGAGAAGATTTTCTTGGATTACGGGAAGTATTTTCCTGCTGAAACAAATGAGAAGGTTTCATATTAGATGAACATAGGCAATTGTTTGCAATAGATATTTTCGGAAGTGCATTAAATTTGCTTCCTTGTTTTGACCTTTATCTTTTCATAATTGATGTATCTGCAGTGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAGGTATTCTTGGTCTTCTCTCCTCCAGCTGTTGCTAGTGCTCTTTGCATTCTCCAAATGTGGTCGTCTTTTTCCTGCACTAGGATGCTCCCTGGTTCTATCCCACACCCATCATAAAAACCTTTTTTTGTGTCTTCGTGGAAGCTTTTTTTTCCATCTTGAAGATAAGGATGTCTTTAGATGTGGAAAAGGAGGACTTTTGTACTTGCCAATACAAGATTGTGTGACTTTCCTATGTTTGCCTATGCTGCAGAATGTCA</genome_strand>
        <mrna_strand>AAGTGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTTTTACACTGGAG..................................................................................................................................................................................................................................GTGATCAAGGTTTTCTTAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAG..........................................................................................................................................................................................................................................................AATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705489" ref_strand="+" ref_description="SGN-E705489 [FA27BB11]">
      <seq>gtttaaatgtgggaagttctgtgcaaatttaaaacattctgagagactgaattctggagtcatggtggttgagccatcagaaaaagtttttaatgatatgatgagcaaggtgaccactttgccttcttacactggaggtgatcaaggttttctcaactcctactatgttgggtttgctaatgctcaggtttatgagccaaatttgccgtcagatgtcttaaattccagaaaggttccagaaatggagagactttctactctttacaatgcagatgttggcctctacatgcttgctaacaagtggatggtggatgaaaaagaacttcgagttattcattacacacttggcccgcttaaaccgtgggattggtggacgtcttggctgttaaaacctgttgatgtctggcagaatgtcagggtacaacttcaagaatctctacctggaactagaggcggcaaaaattccagagatgaacttcttgtcaaatttctttatttgcttccattgcttctgatagcattttgttactatcggtcgttcttacagacacaatcactatggcaccatatcagacaaatgtactacaaggtcagaggaggtgtcctagcttatgcctctgttcctccatctgccatcagctccaaccagcagttcccaaatggtatgcagttgaagatgcctacttatctgggtgcggtatctgtctgtgtctgttttgctgctgctcttgtgtcccttggtcttccacttttaatcattccgcgccaagtaatgccatggactggtctcctccttatgtacgaatggacatttacacttttcttcctcttgttcggaagttatctgcacttantttatcagtggggaagggttgcggcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="62154" stop="65211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62454" g_stop="62590" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62817" g_stop="62980" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="301" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63767" g_stop="63874" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="409" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64125" g_stop="64262" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="547" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64263" i_stop="64340" i_length="78">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64341" g_stop="64445" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="652" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64446" i_stop="64679" i_length="234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64680" g_stop="64911" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="884" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E705489" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62454" e_stop="62590"/>
          <exon e_start="62817" e_stop="62980"/>
          <exon e_start="63767" e_stop="63874"/>
          <exon e_start="64125" e_stop="64262"/>
          <exon e_start="64341" e_stop="64445"/>
          <exon e_start="64680" e_stop="64911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAGGTACTGTTTAGCTGTGAACTGCTTTGGTTTTAAGGTTATATGTTGTCATCACATCTTTCTATAGTCCAACTTATGTTTCTATTGAAAGATTTTATCTTTTATCATCTAATAATTTTAGTGAGATATTTTACTAGTTCTGATAGTTCGTTGCACAGATTGTTTTTTCCATTGTCCTAATGGTGAAAATATTTGTGTTTGATAATTGTTGTTGATTCTCTTCTAACAGGTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAGGTATGTTTAGGTGCAAGAGACTGTCCTTTCTTTGAGTGTGTTTTTAGTTGGTTGGTTTGTGGTGTGTAGGCTTTAGCATTTGATGAAATATGGACCAAATACAGTTAGTTTTTACACTCTTGGGCAAGCTTTAGTGCTTTCCTGGACCCCGCACACTGCGGGAGCGTTAATGCACCAGCCTGCCCCTTTACTCTTAAAAGGAAGGATTAAAGCTGCCATTTTTGTTAATATAGGAAAAGAAGAAAAAGTTGACTTTCATGGGATTGAAATATGCTGCTGTAGTATAGGCTATAGCAATTAGTTATCAACAATTAGTGAAATTTGATTGGTTCATACTATATATTTTATCCATAGAATAGTCTTTCCATGGAGAGAAGAATTTTAGAGAAAGCTGCACAAACTATTTAGGAGAACGTGCTGCTAAATGTGCATGGTATTAATAGAAGGTAGTCAATGAAGATATTTTGGATGGCCAGAGATAAGAGAGGAAAAGCCTAATGCTTGGTACCTTCCACCTCAAACCATAAAGTGGGAATGGATCATTGTCTGACTCTTGTTTTCTTTGGAGGACTGAACTCGTTGGTCTTGCCATGGGGCGTGTACCATATCCCAGAAAAAAAAGAGAAGATTTTCTTGGATTACGGGAAGTATTTTCCTGCTGAAACAAATGAGAAGGTTTCATATTAGATGAACATAGGCAATTGTTTGCAATAGATATTTTCGGAAGTGCATTAAATTTGCTTCCTTGTTTTGACCTTTATCTTTTCATAATTGATGTATCTGCAGTGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAGGTATTCTTGGTCTTCTCTCCTCCAGCTGTTGCTAGTGCTCTTTGCATTCTCCAAATGTGGTCGTCTTTTTCCTGCACTAGGATGCTCCCTGGTTCTATCCCACACCCATCATAAAAACCTTTTTTTGTGTCTTCGTGGAAGCTTTTTTTTCCATCTTGAAGATAAGGATGTCTTTAGATGTGGAAAAGGAGGACTTTTGTACTTGCCAATACAAGATTGTGTGACTTTCCTATGTTTGCCTATGCTGCAGAATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAGGTTGGTGATTTTAAAAAGAGTTAATTACTTAGCCATTAGTCAAAAATTTGAAATATTTCTAAAAGATGGCTTCTGCAGACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAGGTACATCTCTCCTTCCTCTCAGTTGTTGAGTCTTCAACATCCTGATTAAGTTTTGCTCCTTCCTTTCACTATTCATAAATTGGTTATCTTAGAATGCAGAGGCCTTAAATTCTTGCCTTCATATTGACATATTTTGGCTGCTGAAATTAATGACCATATTTCTACCATAATATTGATTTACTTATTGATAAATTTATGTTGCTTTTTCTCACATAATCTTAAAATGATAAACAGTTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATC</genome_strand>
        <mrna_strand>GTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG..................................................................................................................................................................................................................................GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAG..........................................................................................................................................................................................................................................................AATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAG..............................................................................ACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAG..........................................................................................................................................................................................................................................TTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTANTTTATCAGTGGGGAAGGGTTGCGGCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202356" ref_strand="+" ref_description="SGN-E202356 [cLEC-6-P17]">
      <seq>agttctgtgcaaatttaaaacattctgagagactgaattctggagtcatggtggttgagccatcagaaaaagtttttaatgatatgatgagcaaggtgaccactttgccttcttacactggaggtgatcaaggttttctcaactgctactatgttgggtttgctaatgctcaggtatatgagccaaatttgccgtcagatgtgttaaattccataaaggttccagaaatggagagactttctactctttacaatgcagatgttggcctctacatgcttgctaacaagtggatggtggatgaaaaagaacttctagttattcattacacacttggcccgcttaaaccgtgggattggtggacgtattggctgttaaaacctgttgatgtctggcagaatgtgagggtacaacttctagaatctgtacctggaactagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="62168" stop="64469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62468" g_stop="62590" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62817" g_stop="62980" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="287" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63767" g_stop="63874" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="395" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64125" g_stop="64169" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="440" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E202356" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62468" e_stop="62590"/>
          <exon e_start="62817" e_stop="62980"/>
          <exon e_start="63767" e_stop="63874"/>
          <exon e_start="64125" e_stop="64169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAGGTACTGTTTAGCTGTGAACTGCTTTGGTTTTAAGGTTATATGTTGTCATCACATCTTTCTATAGTCCAACTTATGTTTCTATTGAAAGATTTTATCTTTTATCATCTAATAATTTTAGTGAGATATTTTACTAGTTCTGATAGTTCGTTGCACAGATTGTTTTTTCCATTGTCCTAATGGTGAAAATATTTGTGTTTGATAATTGTTGTTGATTCTCTTCTAACAGGTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAGGTATGTTTAGGTGCAAGAGACTGTCCTTTCTTTGAGTGTGTTTTTAGTTGGTTGGTTTGTGGTGTGTAGGCTTTAGCATTTGATGAAATATGGACCAAATACAGTTAGTTTTTACACTCTTGGGCAAGCTTTAGTGCTTTCCTGGACCCCGCACACTGCGGGAGCGTTAATGCACCAGCCTGCCCCTTTACTCTTAAAAGGAAGGATTAAAGCTGCCATTTTTGTTAATATAGGAAAAGAAGAAAAAGTTGACTTTCATGGGATTGAAATATGCTGCTGTAGTATAGGCTATAGCAATTAGTTATCAACAATTAGTGAAATTTGATTGGTTCATACTATATATTTTATCCATAGAATAGTCTTTCCATGGAGAGAAGAATTTTAGAGAAAGCTGCACAAACTATTTAGGAGAACGTGCTGCTAAATGTGCATGGTATTAATAGAAGGTAGTCAATGAAGATATTTTGGATGGCCAGAGATAAGAGAGGAAAAGCCTAATGCTTGGTACCTTCCACCTCAAACCATAAAGTGGGAATGGATCATTGTCTGACTCTTGTTTTCTTTGGAGGACTGAACTCGTTGGTCTTGCCATGGGGCGTGTACCATATCCCAGAAAAAAAAGAGAAGATTTTCTTGGATTACGGGAAGTATTTTCCTGCTGAAACAAATGAGAAGGTTTCATATTAGATGAACATAGGCAATTGTTTGCAATAGATATTTTCGGAAGTGCATTAAATTTGCTTCCTTGTTTTGACCTTTATCTTTTCATAATTGATGTATCTGCAGTGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAGGTATTCTTGGTCTTCTCTCCTCCAGCTGTTGCTAGTGCTCTTTGCATTCTCCAAATGTGGTCGTCTTTTTCCTGCACTAGGATGCTCCCTGGTTCTATCCCACACCCATCATAAAAACCTTTTTTTGTGTCTTCGTGGAAGCTTTTTTTTCCATCTTGAAGATAAGGATGTCTTTAGATGTGGAAAAGGAGGACTTTTGTACTTGCCAATACAAGATTGTGTGACTTTCCTATGTTTGCCTATGCTGCAGAATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGC</genome_strand>
        <mrna_strand>AGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG..................................................................................................................................................................................................................................GTGATCAAGGTTTTCTCAACTGCTACTATGTTGGGTTTGCTAATGCTCAGGTATATGAGCCAAATTTGCCGTCAGATGTGTTAAATTCCATAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGTGGATGAAAAAGAACTTCTAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTATTGGCTGTTAAAACCTGTTGATGTCTGGCAG..........................................................................................................................................................................................................................................................AATGTGAGGGTACAACTTCTAGAATCTGTACCTGGAACTAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325152" ref_strand="+" ref_description="SGN-E325152 [cTOC-13-L7]">
      <seq>ccatcagaaaaagtttttaatgatatgatgagcaaggtgaccactttgccttcttacactggaggtgatcaaggttttctcaactcctactatgttgggtttgctaatgctcacgtttatgagccaaatttgccgtcagatgtcttaaattccagaaaggttccagaaatggagagactttctactctttacaatgcagatgttggcctctacatgcttgctaacaagtggatggtggatgaaaaagaacttcgagttattcattacacacttggcccgcttaaaccgtgggattggtggacgtcttggctgttaaaacctgttgatgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="62227" stop="64171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62527" g_stop="62590" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62817" g_stop="62980" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="228" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63767" g_stop="63871" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="333" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E325152" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62527" e_stop="62590"/>
          <exon e_start="62817" e_stop="62980"/>
          <exon e_start="63767" e_stop="63871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAGGTACTGTTTAGCTGTGAACTGCTTTGGTTTTAAGGTTATATGTTGTCATCACATCTTTCTATAGTCCAACTTATGTTTCTATTGAAAGATTTTATCTTTTATCATCTAATAATTTTAGTGAGATATTTTACTAGTTCTGATAGTTCGTTGCACAGATTGTTTTTTCCATTGTCCTAATGGTGAAAATATTTGTGTTTGATAATTGTTGTTGATTCTCTTCTAACAGGTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAGGTATGTTTAGGTGCAAGAGACTGTCCTTTCTTTGAGTGTGTTTTTAGTTGGTTGGTTTGTGGTGTGTAGGCTTTAGCATTTGATGAAATATGGACCAAATACAGTTAGTTTTTACACTCTTGGGCAAGCTTTAGTGCTTTCCTGGACCCCGCACACTGCGGGAGCGTTAATGCACCAGCCTGCCCCTTTACTCTTAAAAGGAAGGATTAAAGCTGCCATTTTTGTTAATATAGGAAAAGAAGAAAAAGTTGACTTTCATGGGATTGAAATATGCTGCTGTAGTATAGGCTATAGCAATTAGTTATCAACAATTAGTGAAATTTGATTGGTTCATACTATATATTTTATCCATAGAATAGTCTTTCCATGGAGAGAAGAATTTTAGAGAAAGCTGCACAAACTATTTAGGAGAACGTGCTGCTAAATGTGCATGGTATTAATAGAAGGTAGTCAATGAAGATATTTTGGATGGCCAGAGATAAGAGAGGAAAAGCCTAATGCTTGGTACCTTCCACCTCAAACCATAAAGTGGGAATGGATCATTGTCTGACTCTTGTTTTCTTTGGAGGACTGAACTCGTTGGTCTTGCCATGGGGCGTGTACCATATCCCAGAAAAAAAAGAGAAGATTTTCTTGGATTACGGGAAGTATTTTCCTGCTGAAACAAATGAGAAGGTTTCATATTAGATGAACATAGGCAATTGTTTGCAATAGATATTTTCGGAAGTGCATTAAATTTGCTTCCTTGTTTTGACCTTTATCTTTTCATAATTGATGTATCTGCAGTGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGG</genome_strand>
        <mrna_strand>CCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG..................................................................................................................................................................................................................................GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCACGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365772" ref_strand="+" ref_description="SGN-E365772 [cLPT-8-P24]">
      <seq>ttatgcctctgttcctccatctgccatcagctccaaccagcagttcccaaatggtatgcagttgaagatgcctacttatctgggtgcggtatctgtctgtgtctgttttgctgctgctcttgtgtcccttggtcttccacttttaatcattccgcgccaagtaatgccatggactggtctcctccttatgtacgaatggacatttacacttttcttcctcttgttcggaagttatttgcacttagtttatcagtggggaagggttgcggcaaatcaacctggtcaatttccggctcatcctgtatctttggattatgaacctggaaaaggtcatcagcggcaacaatcatgttgtgacaatgcagcatggtactatgggttagggatggcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="64103" stop="65422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64403" g_stop="64445" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64446" i_stop="64679" i_length="234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64680" g_stop="64965" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="329" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65122" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="395" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E365772" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64403" e_stop="64445"/>
          <exon e_start="64680" e_stop="64965"/>
          <exon e_start="65057" e_stop="65122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAGGTACATCTCTCCTTCCTCTCAGTTGTTGAGTCTTCAACATCCTGATTAAGTTTTGCTCCTTCCTTTCACTATTCATAAATTGGTTATCTTAGAATGCAGAGGCCTTAAATTCTTGCCTTCATATTGACATATTTTGGCTGCTGAAATTAATGACCATATTTCTACCATAATATTGATTTACTTATTGATAAATTTATGTTGCTTTTTCTCACATAATCTTAAAATGATAAACAGTTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAGGTTCGTTCATTTTACCAGATCACCGAATTCTATTTTACTAAATTTGTCGGTGCTTTTCTTCAGTGTTGCTGCCTACTTTTTTGCTTTGTAGGTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTC</genome_strand>
        <mrna_strand>TTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAG..........................................................................................................................................................................................................................................TTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATTTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG...........................................................................................GTCATCAGCGGCAACAATCATGTTGTGACAATGCAGCATGGTACTATGGGTTAGGGATGGCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231103" ref_strand="+" ref_description="SGN-E231103 [cLED-5-L6]">
      <seq>acttagtttatcagtggggaagggttgcggcaaatcaacctggtcaatttccggctcatcctgtatctttggattatgaacctggaaaaggtcatcagcggcaacaatcatgttgtgacaatgaagcatggtactatgggttagggatggcatttcttgccattgcagccccagcattgcctggtgtttttggagtcacttctttgtttttgaggttaggtttgatggtcgtaggcggccttattttgacgtccttcatgacatatgcttcagagcatctatcgattagatcattcgcgaggggctttgaagaaaggaacacaccaaggagtaggagtgtgtgtttcttatgttgatcatgtcaatatttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="64576" stop="66598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64876" g_stop="64965" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65057" g_stop="65180" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="214" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66139" g_stop="66298" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="374" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E231103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64876" e_stop="64965"/>
          <exon e_start="65057" e_stop="65180"/>
          <exon e_start="66139" e_stop="66298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAGGTTCGTTCATTTTACCAGATCACCGAATTCTATTTTACTAAATTTGTCGGTGCTTTTCTTCAGTGTTGCTGCCTACTTTTTTGCTTTGTAGGTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAGGTACTCCCAACAGGATTTCTGCATTTCAATGAATTTTGTGTCATTTGGTTGTTGTCTATTCGAGCTGGATTTGAATTACGTGATAGCAGTTGGTGTCTACTTGCCATGTGGTTTCTTGGTTTCACCTATAAAACTAGAATCTCTCAAGTATCTATACATGTGTAGTTATAAGTTATATTGCAATATATATTTAAATGGACTCCTAATCACATCTTTAACTCATTCATGAATAAGAAAGAAATAATACGGGCGAGAAAAGACCAAGTAAATTCAGGCTTTTAAAGTTAATTCAGAATTTCGCATATGTTATATTTTGAAGGCCCAGTAAGCCTAAAAGAGGCTTTAGCAACCATTCTTATTAGACGACTGTCTCATATATTCCTCTTATGTTATCGTAGTGAATTGCTTTATATCCTATATTTTGCCGTCTTATTTTCTTATAAAATTGTGCTTCAAATTCTTCTTTTCTTTTGAACCGAGGGTCTATCGCAAACCACCTTTCTACCCACAAGGGTAGGGGTAGGATTTGCATACATCCTACCCTCCCCGACCATCCTCGTAGGATTGCACTGGATTTGTTAGCATAGTGTAGCTTCAACAACATTGCTGGGTTGTTATGTAAGCCATCTTCTATGACCGCGTAGCGTCACATATTCTGACAAATTCTATGAATCCTTAACTTTTTGGTGCTTGTTTTCTTTTATAGTTTCATCACTCAGGTAGAATTTCTTGGTGATGCTGTTGGCTTCTCCGAACGTCCAATTTCTCACCCTCTCCTTTGTTTTCTTGTCCGTCTTTACAAATACCTCTTGTTGTGATTAGGCACTAGAATATCTTTGACGTAAATAGTCAAAGAATATCTCCCGGGTAGACATTGGTTGAATACGAATATTCATATGATGTGATGGAAGTGAAACATCTACGGAACGTAACGTTTCGTTCTTATGTTTTTCCACAGGTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGG</genome_strand>
        <mrna_strand>ACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG...........................................................................................GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284522" ref_strand="+" ref_description="SGN-E284522 [cLES-3-C8]">
      <seq>ggcaaatcaacctggtcaatttccggctcatcctgtatctttggattatgaacctggaaaaggtcatcagcggcaacaatcatgttgtgacaatgaagcatggtactatgggttagggatggcatttcttgccattgcagccccagcattgcctggtgtttttggagtcacttctttgtttttgaggttaggtttgatggtcgtaggcggccttattttgacgtccttcatgacatatgcttcagagcatctatcgattagatcattcgcgaggggctttgaagaaaggaacacaccaaggagtaggagtgtgtgtttcttatgttgatcatgtcaatatttttggttttagcttaactacaagcaatcatcttcttgatctcatttgtaacttgttttgacatattcttcctagtgaaaatatgtagaatatgttgggaaatcatttatttactaatgtgatttttattttttttgttaagggtaaaaaagtgtatgttttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="64604" stop="66761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64904" g_stop="64965" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65057" g_stop="65180" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="186" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66139" g_stop="66458" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="506" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="516"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E284522" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64904" e_stop="64965"/>
          <exon e_start="65057" e_stop="65180"/>
          <exon e_start="66139" e_stop="66458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAGGTTCGTTCATTTTACCAGATCACCGAATTCTATTTTACTAAATTTGTCGGTGCTTTTCTTCAGTGTTGCTGCCTACTTTTTTGCTTTGTAGGTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAGGTACTCCCAACAGGATTTCTGCATTTCAATGAATTTTGTGTCATTTGGTTGTTGTCTATTCGAGCTGGATTTGAATTACGTGATAGCAGTTGGTGTCTACTTGCCATGTGGTTTCTTGGTTTCACCTATAAAACTAGAATCTCTCAAGTATCTATACATGTGTAGTTATAAGTTATATTGCAATATATATTTAAATGGACTCCTAATCACATCTTTAACTCATTCATGAATAAGAAAGAAATAATACGGGCGAGAAAAGACCAAGTAAATTCAGGCTTTTAAAGTTAATTCAGAATTTCGCATATGTTATATTTTGAAGGCCCAGTAAGCCTAAAAGAGGCTTTAGCAACCATTCTTATTAGACGACTGTCTCATATATTCCTCTTATGTTATCGTAGTGAATTGCTTTATATCCTATATTTTGCCGTCTTATTTTCTTATAAAATTGTGCTTCAAATTCTTCTTTTCTTTTGAACCGAGGGTCTATCGCAAACCACCTTTCTACCCACAAGGGTAGGGGTAGGATTTGCATACATCCTACCCTCCCCGACCATCCTCGTAGGATTGCACTGGATTTGTTAGCATAGTGTAGCTTCAACAACATTGCTGGGTTGTTATGTAAGCCATCTTCTATGACCGCGTAGCGTCACATATTCTGACAAATTCTATGAATCCTTAACTTTTTGGTGCTTGTTTTCTTTTATAGTTTCATCACTCAGGTAGAATTTCTTGGTGATGCTGTTGGCTTCTCCGAACGTCCAATTTCTCACCCTCTCCTTTGTTTTCTTGTCCGTCTTTACAAATACCTCTTGTTGTGATTAGGCACTAGAATATCTTTGACGTAAATAGTCAAAGAATATCTCCCGGGTAGACATTGGTTGAATACGAATATTCATATGATGTGATGGAAGTGAAACATCTACGGAACGTAACGTTTCGTTCTTATGTTTTTCCACAGGTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGT</genome_strand>
        <mrna_strand>GGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG...........................................................................................GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGGTAAAAAAGTGTATGTTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356885" ref_strand="+" ref_description="SGN-E356885 [cTOS-22-I10]">
      <seq>tccggctcatcctgtatctttggattatgaacctggaaaaggtcatcagcggcaacaatcatgttgtgacaatgaagcatggtactatgggttagggatggcatttcttgccattgcagccccagcattgcctggtgtttttggagtcacttctttgtttttgaggttaggtttgatggtcgtaggcggccttattttgacgtccttcatgacatatgcttcagagcatctatcgattagatcattcgcgaggggctttgaagaaaggaacacaccaaggagtaggagtgtgtgtttcttatgttgatcatgtcaatatttttggttttagcttaactacaagcaatcatcttcttgatctcatttgtaacttgttttgacatattcttcctagtgaaaatatgtagaatatgttgggaaatcatttatttactaatgtgatttttattttttttgttaaggttaaaaaggtgtatgttttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="64625" stop="66761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64925" g_stop="64965" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65057" g_stop="65180" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="165" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66139" g_stop="66458" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="485" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="486" polyA_stop="495"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E356885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64925" e_stop="64965"/>
          <exon e_start="65057" e_stop="65180"/>
          <exon e_start="66139" e_stop="66458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAGGTTCGTTCATTTTACCAGATCACCGAATTCTATTTTACTAAATTTGTCGGTGCTTTTCTTCAGTGTTGCTGCCTACTTTTTTGCTTTGTAGGTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAGGTACTCCCAACAGGATTTCTGCATTTCAATGAATTTTGTGTCATTTGGTTGTTGTCTATTCGAGCTGGATTTGAATTACGTGATAGCAGTTGGTGTCTACTTGCCATGTGGTTTCTTGGTTTCACCTATAAAACTAGAATCTCTCAAGTATCTATACATGTGTAGTTATAAGTTATATTGCAATATATATTTAAATGGACTCCTAATCACATCTTTAACTCATTCATGAATAAGAAAGAAATAATACGGGCGAGAAAAGACCAAGTAAATTCAGGCTTTTAAAGTTAATTCAGAATTTCGCATATGTTATATTTTGAAGGCCCAGTAAGCCTAAAAGAGGCTTTAGCAACCATTCTTATTAGACGACTGTCTCATATATTCCTCTTATGTTATCGTAGTGAATTGCTTTATATCCTATATTTTGCCGTCTTATTTTCTTATAAAATTGTGCTTCAAATTCTTCTTTTCTTTTGAACCGAGGGTCTATCGCAAACCACCTTTCTACCCACAAGGGTAGGGGTAGGATTTGCATACATCCTACCCTCCCCGACCATCCTCGTAGGATTGCACTGGATTTGTTAGCATAGTGTAGCTTCAACAACATTGCTGGGTTGTTATGTAAGCCATCTTCTATGACCGCGTAGCGTCACATATTCTGACAAATTCTATGAATCCTTAACTTTTTGGTGCTTGTTTTCTTTTATAGTTTCATCACTCAGGTAGAATTTCTTGGTGATGCTGTTGGCTTCTCCGAACGTCCAATTTCTCACCCTCTCCTTTGTTTTCTTGTCCGTCTTTACAAATACCTCTTGTTGTGATTAGGCACTAGAATATCTTTGACGTAAATAGTCAAAGAATATCTCCCGGGTAGACATTGGTTGAATACGAATATTCATATGATGTGATGGAAGTGAAACATCTACGGAACGTAACGTTTCGTTCTTATGTTTTTCCACAGGTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGT</genome_strand>
        <mrna_strand>TCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG...........................................................................................GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="69152" stop="68331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68853" g_stop="68631" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68853" e_stop="68631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTTCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAATCACT-AAAA-TTTTCCTTCTTTGCATATATTTTTCTCTCAAAT-AAATCAAAGTGTCGATTGACTGAGTCTGTGTGACTTGTTGTTGTTCTGAAGTTCGCTGAAGTTAAAGAAATTCGAGGTACCGCTATTTC-TTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245998" ref_strand="+" ref_description="SGN-E245998 [cLEF-54-G18]">
      <seq>caaagcctttgaaaaaatgtttaaaactttgaaaaacgattttcaaatttgcgaagaaatcggccgtgggagattcggtaccgtctaccgctgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgaatgtctcgataaagaacccaaaattcttcaacttctttcaggtaaccccaacattcttcatctttataaggtttacgaagatgacgatttccttcatatggtaaccgatttctgcccgaatagtgatttatatgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgattcaattggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgacattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgctggttgtgatgggaggaagatgaatggggttgtgggtacgccgtattacgttgcgccggaggttttaatggggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73677" stop="74842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73977" g_stop="74542" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E245998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73977" e_stop="74542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAG</genome_strand>
        <mrna_strand>CAAAGCCTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478404" ref_strand="+" ref_description="SGN-E478404 [cSTD-4-N11]">
      <seq>aaagccttaaaaaaaatgttccaaaccttgaaaaacgaatttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggctaccggagaatctttcgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttccggtaaccccaacattctccatctttacaaggtttatgaagatgacgatttccttcacatggtaaccgatttctgcccgaatagtgatttatacgaaagggtttcatctgggtcgttgtcagaatcggcagccgcggccattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgncgaatggtttgctggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttaatggggaaagagtataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73678" stop="74851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73978" g_stop="74551" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E478404" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73978" e_stop="74551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATG</genome_strand>
        <mrna_strand>AAAGCCTTAAAAAAAATGTTCCAAACCTTGAAAAACGAATTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCTACCGGAGAATCTTTCGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTCCGGTAACCCCAACATTCTCCATCTTTACAAGGTTTATGAAGATGACGATTTCCTTCACATGGTAACCGATTTCTGCCCGAATAGTGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCAGCCGCGGCCATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGNCGAATGGTTTGCTGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478387" ref_strand="+" ref_description="SGN-E478387 [cSTD-4-D19]">
      <seq>aaagccttaaaaaaaatgttccaaaccttgaaaaacgaatttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggctaccggagaatctttcgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttccggtaaccccaacattctccatctttacaaggtttatgaagatgacgatttccttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73678" stop="74546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73978" g_stop="74246" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E478387" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73978" e_stop="74246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATAT</genome_strand>
        <mrna_strand>AAAGCCTTAAAAAAAATGTTCCAAACCTTGAAAAACGAATTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCTACCGGAGAATCTTTCGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTCCGGTAACCCCAACATTCTCCATCTTTACAAGGTTTATGAAGATGACGATTTCCTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346202" ref_strand="+" ref_description="SGN-E346202 [cTOF-23-I5]">
      <seq>ttaaaaaaaaagatgtttcaaaccttgaaaaacgattttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgataaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcagcttctttcaggtaaccccaacattcttcatctttataaggtttatgaagatgacgattttcttcatatggtaaccgatttctgcccgaatagtgatttgtatgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtgggggttgtgggtacgccgtattatgttgcgccggaggttctaatggggaaagagtataatgagaaagttgatgtgtggagtgcgggtgttattttgtatattatgctttctggggttcctnctttttacggtgaaacgccgactgagacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73688" stop="74942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73981" g_stop="74642" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E346202" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73981" e_stop="74642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAAT-GGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTT</genome_strand>
        <mrna_strand>TTAAAAAAAAAGATGTTTCAAACCTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGATAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAGCTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTATGAAGATGACGATTTTCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTGTATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTCTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTGCGGGTGTTATTTTGTATATTATGCTTTCTGGGGTTCCTNCTTTTTACGGTGAAACGCCGACTGAGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604645" ref_strand="+" ref_description="SGN-E604645 [74782]">
      <seq>ctttaaaaaaatatgttcaaacctttgaaaaacggaattcaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggcgaccggagaatctttcgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaatccttcaactcctttccggtaaccccaacattcttcatctctataaggtttatgaagatgacaatttccttcatatggtaaccgatttctgcccgaatagcgatttatacgaaagggtttcatccggatcgttgtcagagtcggcagccgcggccattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggtttcgatggggaaagagtataatgacgaaggttgatgtgtggagtgcaggtgttattttgtatattatgctttctgaggttcctcctttttatggtgaaacgccgactgagacttttcacgctgtctcagagggaattgaggttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73718" stop="74975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73982" g_stop="74674" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E604645" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73982" e_stop="74674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGAAAAA-ATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGA-GAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTC</genome_strand>
        <mrna_strand>CTTTAAAAAAATATGTTCAAACCTTTGAAAAACGGAATTC-AATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCTTTCGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATCCTTCAACTCCTTTCCGGTAACCCCAACATTCTTCATCTCTATAAGGTTTATGAAGATGACAATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGCGATTTATACGAAAGGGTTTCATCCGGATCGTTGTCAGAGTCGGCAGCCGCGGCCATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTCGATGGGGAAAGAGTATAATGACGAAGGTTGATGTGTGGAGTGCAGGTGTTATTTTGTATATTATGCTTTCTGAGGTTCCTCCTTTTTATGGTGAAACGCCGACTGAGACTTTTCACGCTG-TCTCAGAGGGAAT-TGAGGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622111" ref_strand="+" ref_description="SGN-E622111 [72474]">
      <seq>cttgaaaaaaatgttccaaaccttgaaaaacgaatttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccggtgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttccggtaaccccaacattctccatctttacaaggtttatgaagatgaccatttccttcacatggtaaccgatttctgcccgaatagcgatttatacgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttgatggggaaagagtataatgagaaggttgatgtgtggagtgtgggggttatttggtatattatgctgtctggggttcctcctttttatggagaaacgccgactgagacttttcaagctgttctcagggcggaatttgaggtttccgacgaggaatttcaggtcaggtttcgcctgaagcgaaagattcgttgaggaagcatgatatgtaaggatgtttccagaagattctcaggtgaaacaagtactgagacatccatgggtgattaatgggaggagagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73685" stop="75077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73983" g_stop="74776" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E622111" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73983" e_stop="74776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAG-GGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCA-GTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAG-ATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTG-AACAAGTATTGA</genome_strand>
        <mrna_strand>CTTGAAAAAAATGTTCCAAACCTTGAAAAACGAATTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGGTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTCCGGTAACCCCAACATTCTCCATCTTTACAAGGTTTATGAAGATGACCATTTCCTTCACATGGTAACCGATTTCTGCCCGAATAGCGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTGATGGGGAAAGAGTATAATGAGAAGGTTGATGTGTGGAGTGTGGGGGTTATTTGGTATATTATGCTGTCTGGGGTTCCTCCTTTTTATGGAGAAACGCCGACTGAGACTTTTCAAGCTGTTCTCAGGGCGGAATTTGAGGTTTCCGACGAGGAATTTCAGGTCAGGTTTCGCCTGAAGCGAAAGATTCGTTGAGGAAGCATGATATGTAAGGATGTTTCCAGAAGATTCTCAGGTGAAACAAGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479387" ref_strand="+" ref_description="SGN-E479387 [cSTD-9-N21]">
      <seq>cttaaaaaaaatgttccaaaccttgaaaaacgaatttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggctaccggagaatctttcgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttccggtaaccccaacattctccatctttacaaggtttatgaagatgacgatttccttcacatggtaaccgatttctgcccgaatagtgatttatacgaaagggtttcatctgggtcgttgtcagaatcggcagccgcggccattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgctggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttaatggggaaagagtataatgagaaggttgatgtgtggagtgcccgtgttattttgtatattatgctttctggggttcctcctttttatggtgaaacgccgaccgagacttttcaagctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73683" stop="74955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73983" g_stop="74655" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E479387" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73983" e_stop="74655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTC</genome_strand>
        <mrna_strand>CTTAAAAAAAATGTTCCAAACCTTGAAAAACGAATTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCTACCGGAGAATCTTTCGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTCCGGTAACCCCAACATTCTCCATCTTTACAAGGTTTATGAAGATGACGATTTCCTTCACATGGTAACCGATTTCTGCCCGAATAGTGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCAGCCGCGGCCATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAGGTTGATGTGTGGAGTGCCCGTGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTATGGTGAAACGCCGACCGAGACTTTTCAAGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254378" ref_strand="+" ref_description="SGN-E254378 [cLEG-27-M9]">
      <seq>aaaagatgtttcaaaccttgaaaaacgattttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgataaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcagcttctttcaggtaaccccaacattcttcatctttataaggtttatgaagatgacgattttcttcatatggtaaccgatttctgcccgaatagtgatttgtatgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttctaatggggaaagagtataatgagaaagttgatgtgtggagtgcgggtgttattttgtatattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73689" stop="74895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73988" g_stop="74595" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E254378" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73988" e_stop="74595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATG</genome_strand>
        <mrna_strand>AAAAGATGTTTCAAACCTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGATAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAGCTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTATGAAGATGACGATTTTCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTGTATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTCTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTGCGGGTGTTATTTTGTATATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207139" ref_strand="+" ref_description="SGN-E207139 [cLEC-30-K5]">
      <seq>aagccttaaaaaaaaagatgtttcaaaccttgaaaaacgattttcaaatttgcgaagaaatcggccgggggggattcggggccgtctaccgctgcttttctcctgcgaccggagaatcctgcggcggggaatctatcgataaaaacctcctcattgattccaccgaccgggagtgtctcgataaaaaacccaaaattcttcagcttctttcaggtaaccccaacattcttcatctttataaggcttatgaagatgaccattttcttcatatggtaaccgatttctgcccgaatagtgatttgtatgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcacttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgctggttgattctgagaatagattgaagctagctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73688" stop="74787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73988" g_stop="74487" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="512" r_length="500" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E207139" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73988" e_stop="74487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATG</genome_strand>
        <mrna_strand>AAAAGATGTTTCAAACCTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGGGGGGGATTCGGGGCCGTCTACCGCTGCTTTTCTCCTGCGACCGGAGAATCCTGCGGCGGGGAATCTATCGATAAAAACCTCCTCATTGATTCCACCGACCGGGAGTGTCTCGATAAAAAACCCAAAATTCTTCAGCTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGCTTATGAAGATGACCATTTTCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTGTATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCACTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGCTGGTTGATTCTGAGAATAGATTGAAGCTAGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578315" ref_strand="+" ref_description="SGN-E578315 [LE12CC01]">
      <seq>aaaatgtttaaaactttgaaaaacgattttcaaatttgcgaagaaatcggccgtgggagattcggtaccgtctaccgctgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgacaaaacctcctcattgattccaccgaccgtgaatgtctcgataaagaacccaaaattcttcaacttctttcaggtaaccccaacattcttcatctttataaggtttacgaagatgacgatttccttcatatggtaaccgatttctgcccgaatagtgatttatatgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgattcaattggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgacattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgctggttgtgatgggaggaagatgaatggggttgtgggtacgccgtattacgttgcgccggaggttttaatggggaaagagtataatgagaaagttgatgtgtggagtttgggggttattttgtatattatgctttctggggttcctcctttttacggggaaacgccgactgaaacttttcaagctgttctcagagggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73690" stop="74964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73990" g_stop="74664" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E578315" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73990" e_stop="74664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAAT</genome_strand>
        <mrna_strand>AAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGAC-AAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGGGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624417" ref_strand="+" ref_description="SGN-E624417 [GI|25991349]">
      <seq>atgtttcaaaccttgaaaaacgaatttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggcgaccggagaatctttcgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactccttcccggtaaccccaacattctccatctttacaaggtttatgaagatgacgatttccttcacatggtaaccgatttctgcccgaatagtgatttatacgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagttattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattcggagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttaatggggaaagagtataatgagaaggtggatgtgtggagtgcaggtgttattttgtatattatgctttctggggttcctcctttttatggtgaaacgccgactgagacttttcaagctgttctcagagggaatttgaggtttccgacgaggaatttcaggtcagtttcgtctgaagcgaaagatttgttgaggaagatgatatgtaaggatgtttccagacgattttcagctgaacaagtactgagacacccatgggtgattaatggaggagagacaagatcaatggctgatctaaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73693" stop="75077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73993" g_stop="74776" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E624417" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73993" e_stop="74776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGA</genome_strand>
        <mrna_strand>ATGTTTCAAACCTTGAAAAACGAATTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCTTTCGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTCCCGGTAACCCCAACATTCTCCATCTTTACAAGGTTTATGAAGATGACGATTTCCTTCACATGGTAACCGATTTCTGCCCGAATAGTGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGTTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCGGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAGGTGGATGTGTGGAGTGCAGGTGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTATGGTGAAACGCCGACTGAGACTTTTCAAGCTGTTCTCAGAGGGAATTTGAGGTTTCCGACGAGGAATTTCAGGTCAGTTTCGTCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAGGATGTTTCCAGACGATTTTCAGCTGAACAAGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624265" ref_strand="+" ref_description="SGN-E624265 [GI|33329257]">
      <seq>atgttccaaaccttgaaaaacgattttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccggtgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttccggtaaccccaacattcttcatctctataaggtttacgaagatgacgatttccttcatatggtaaccgatttctgcccgaatagcgatttatacgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattcggagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttgatggggaaagagtataatgagaaggttgatgtgtggagtgtgggggttattttgtatattatgctttctggggttcctcctttttacggtgaaacgccgactgagacttttcaagctgttctcagagggaatttgaggtttccgacgaggaatttcaggtcagtttcgcctgaagcgaaagatttgttgaggaagatgatatgtaaggatgtttccagaagattttcagctgaacaagtactgagacatccatgggtgattaatggaggagagacaagatcaatggctgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73693" stop="75077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73993" g_stop="74776" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E624265" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73993" e_stop="74776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGA</genome_strand>
        <mrna_strand>ATGTTCCAAACCTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGGTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTCCGGTAACCCCAACATTCTTCATCTCTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGCGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCGGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTGATGGGGAAAGAGTATAATGAGAAGGTTGATGTGTGGAGTGTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAGACTTTTCAAGCTGTTCTCAGAGGGAATTTGAGGTTTCCGACGAGGAATTTCAGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAGGATGTTTCCAGAAGATTTTCAGCTGAACAAGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300219" ref_strand="+" ref_description="SGN-E300219 [cLEW-17-I12]">
      <seq>gaggaaaactttgaaaaacgattttcaaatttgcgaagaaatcggccgtgggagaattcggtaccgtctaccgctgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgaatgtctcgataaagaacccaaaattcttcaacttctttcaggtaaccccaacattcttcatctttataaggtttacgaagaatgacgatttccttcatatggtaaccgatttctgcccgaatagtgatttatatgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgattcaattggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgacattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgctggttgtgatgggaggaagatgaatggggttgtgggtacgccgtattacgttgcgccggaggttttaatggggaaagagtataatgagaaagttgatgtgtggagtttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73699" stop="74877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73995" g_stop="74577" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E300219" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73995" e_stop="74577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAG-ATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAG-ATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGG</genome_strand>
        <mrna_strand>GAGGAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGAATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGAATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278678" ref_strand="+" ref_description="SGN-E278678 [cLER-10-F14]">
      <seq>tcaaaccttgaaaaacgattttcaaatttgcgaagaaatcggccgtggtagattcggtaccgtctaccgctgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgataaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcagcttctttcaggtaaccccaacattcttcatctttataaggtttatgaagatgacgattttcttcatatggtaaccgatttctgcccgaatagtgatttgtatgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73698" stop="74774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73998" g_stop="74475" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E278678" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73998" e_stop="74475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGAT</genome_strand>
        <mrna_strand>TCAAACCTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGTAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGATAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAGCTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTATGAAGATGACGATTTTCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTGTATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581054" ref_strand="+" ref_description="SGN-E581054 [6297]">
      <seq>gccttggaaaaacatagttccaagaccttggaaaaacgaatttcaaatttgcgaaaagtacggccgtggtagattcggtaccgtctaccggtgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttaccggtaaccccacacattactccatctttacgatgtttatgaagatgaccatttaccttcacatggtaaccgatttctgcctgaatagcgatttatacgaaagggtttcatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73681" stop="74597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74004" g_stop="74297" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="325" r_length="298" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E581054" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74004" e_stop="74297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTT-CAGGTAACCCCA-ACATT-CTTCATCTTTATAAGGTTTACGAAGATGACGATTT-CCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGG</genome_strand>
        <mrna_strand>TTGGAAAAACGAATTTCAAATTTGCGAAAAGTACGGCCGTGGTAGATTCGGTACCGTCTACCGGTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTACCGGTAACCCCACACATTACTCCATCTTTACGATGTTTATGAAGATGACCATTTACCTTCACATGGTAACCGATTTCTGCCTGAATAGCGATTTATACGAAAGGGTTTCATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585718" ref_strand="+" ref_description="SGN-E585718 [68181]">
      <seq>ctaccggtgcttttctccggcgaccggagaatcctacgcctgtaaatctatcgacaaaaacctcctcattgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttccggtaaccccaacattcttcatctctataaagtttacgaagatgacgatttccttcatatggtaaccgatttctgcccgaatagcgatttatacgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgattcagttggtttctgcgattagctattgtcatcatatgggtgttgctcatcgtgatattaaaccagataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggtttcgatggggaaagagtatactgagaaggttgatgtgtggagtgtgggggttatccggtactattatgctttctggggttcctcctttttacggtgaaacgccgactgagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73761" stop="74941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74061" g_stop="74641" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E585718" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74061" e_stop="74641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTA-TATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTT</genome_strand>
        <mrna_strand>CTACCGGTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTCCGGTAACCCCAACATTCTTCATCTCTATAAAGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGCGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTTGCTCATCGTGATATTAAACCAGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTCGATGGGGAAAGAGTATACTGAGAAGGTTGATGTGTGGAGTGTGGGGGTTATCCGGTACTATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581586" ref_strand="+" ref_description="SGN-E581586 [6743]">
      <seq>attgattccaccgaccgtgagtgtctcgataaagaacccaaaattcttcaactcctttccggtaaccccaacattctccatctttacaaggtttatgaagatgaccatttccttcacatggtaaccgatttctgcccgaatagcgatttatacgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttgatggggaaagagtataatgagaaggttgatgtgtggagtgtgggggttattttgtatattatgctgtctggggttcctcctttttatggagaaacgccgactgagacttttcaagctgttctcaggggggaatttgaggtttccgacgaggaatttcaggtcagtttcgcctgaagcgaaagatttgttgaggaagatgatatgtaaggatgttccagaagattttcagttgaacagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73828" stop="75072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74128" g_stop="74773" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E581586" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74128" e_stop="74773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCA-GAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTAT</genome_strand>
        <mrna_strand>ATTGATTCCACCGACCGTGAGTGTCTCGATAAAGAACCCAAAATTCTTCAACTCCTTTCCGGTAACCCCAACATTCTCCATCTTTACAAGGTTTATGAAGATGACCATTTCCTTCACATGGTAACCGATTTCTGCCCGAATAGCGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTGATGGGGAAAGAGTATAATGAGAAGGTTGATGTGTGGAGTGTGGGGGTTATTTTGTATATTATGCTGTCTGGGGTTCCTCCTTTTTATGGAGAAACGCCGACTGAGACTTTTCAAGCTGTTCTCAGGGGGGAATTTGAGGTTTCCGACGAGGAATTTCAGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAGGATG-TTCCAGAAGATTTTCAGTTGAAC-AGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581587" ref_strand="+" ref_description="SGN-E581587 [6743]">
      <seq>cgaccgtgagtgtctcgataaagaacccaaaatcttcaactcctttccggtaaccccaacattctccatctttacaaggtttatgaagatgaccatttccttcacatggtaaccgatttctgcccgaatagcgatttatacgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttgatggggaaagagtataatgagaaggttgatgtgtggagtgtgggggttattttgtatattatgctgtctggggttcctcctttttatggagaaacgccgactgagacttttcaagctgttctcagggggaatttgaggtttccgacgaggaatttcaggtcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73839" stop="74997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74139" g_stop="74697" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E581587" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74139" e_stop="74697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTT</genome_strand>
        <mrna_strand>CGACCGTGAGTGTCTCGATAAAGAACCCAAAA-TCTTCAACTCCTTTCCGGTAACCCCAACATTCTCCATCTTTACAAGGTTTATGAAGATGACCATTTCCTTCACATGGTAACCGATTTCTGCCCGAATAGCGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTGATGGGGAAAGAGTATAATGAGAAGGTTGATGTGTGGAGTGTGGGGGTTATTTTGTATATTATGCTGTCTGGGGTTCCTCCTTTTTATGGAGAAACGCCGACTGAGACTTTTCAAGCTGTTCTCAGGGGGAATTTGAGGTTTCCGACGAGGAATTTCAGGTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594472" ref_strand="+" ref_description="SGN-E594472 [37724]">
      <seq>atagcgatttatacgaaagggtttcatctgggtcgttgtcagaatcggctgccgcggctattctgactcagttggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgatattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgcgggttgtgaagggaggatgatgagtggggttgtgggtacgccgtattatgttgcgccggaggttttgatggggaaagagtataatgagaaggttgatgtgtggagtgtgggggttattttgtatattatgctgtctggggttcctcctttttatggagaaacgccgactgagacttttcaagctgttctcagggggaatttgaggtttccgacgaggaatttcaggtcagtttcgcctgaagcgaaaggattgttgacgaagatgatatgtacgggatgttttccagaaagattttcaagctgaaccaagtactgagacatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73967" stop="75077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74267" g_stop="74776" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E594472" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74267" e_stop="74776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTA-AAGATG-TTTCCAG-AAGATTTTC-AGCTGAA-CAAGTATTGA</genome_strand>
        <mrna_strand>ATAGCGATTTATACGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGACTCAGTTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGATATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCGGGTTGTGAAGGGAGGATGATGAGTGGGGTTGTGGGTACGCCGTATTATGTTGCGCCGGAGGTTTTGATGGGGAAAGAGTATAATGAGAAGGTTGATGTGTGGAGTGTGGGGGTTATTTTGTATATTATGCTGTCTGGGGTTCCTCCTTTTTATGGAGAAACGCCGACTGAGACTTTTCAAGCTGTTCTCAGGGGGAATTTGAGGTTTCCGACGAGGAATTTCAGGTCAGTTTCGCCTGAAGCGAAAGGATTGTTGACGAAGATGATATGTACGGGATGTTTTCCAGAAAGATTTTCAAGCTGAACCAAGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370931" ref_strand="+" ref_description="SGN-E370931 [TUS-27-L1]">
      <seq>tcgttgtcagaatcggctgccgcggctattctgattcaattggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgacattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgctggttgtgatgggaggaagatgaatggggttgtgggtacgccgtattacgttgcgccggaggttttaatggggaaagagtataatgagaaagttgatgtgtggagtttgggggttattttgtatattatgctttctggggttcctcctttttacggtgaaacgccgactgaaacttttcaagctgttctcagagggaatctgaggtttccgacgaggaatttccggtcagtttcgcctgaagcgaaagatttgttgaggaagatgatatgtaaagatgtttccagaagattttaagctgaacaagtattgagacatccatgggtgcttaatggaggagaaacaagatcaatggttgattgaacttgaacaggatactaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73999" stop="75723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74299" g_stop="74776" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74777" i_stop="75352" i_length="576">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75353" g_stop="75423" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="549" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E370931" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74299" e_stop="74776"/>
          <exon e_start="75353" e_stop="75423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGAGTAAGTTAAATTTAATATTTCTGTTCTCCATATCCGTATTCCGTATCGATATGCTTTATTTAAGACGAATTTATCAGAAATAGCCTCGTAGAATCTCTATCTTTAAATACGATTCATAGACATTCTATCCTTTCTAAACTTCACGTGTAGGATTAGTAATTGTTATGACATGAAATGAGCTTAAATAACGATTATTCATACTATTGAATCCCAACTTATTTAAGATTGAGACGTTGTCTTGTTTTAGTTAGTTTAGGAGCTTAGTTTCAATAAAAATTTGTTTCTTTTTTACCCCTTCATAGTGTGCTTTCTTGATGACTCGAACTTACGTAGAATACTTACCTAGAATTAGATGTGAGGGATGTTTACCATCCTAGCAACTCCCAGTCGTTCTTTTTTACCCCTTCATAGTGTGTTTCCTTGATAACTCGAACTTACGTAGAATTGAATGTGAGGGAGGCTTACCATCCCAGCAACTCCCAGTCGTTCGTTCAAAATATTTTCTTGATTGTTCAATTTAGTGTTTTCTCATTGATGAATATTATGTGATGTTGATGTTATTTTTGTTAAATACAGGACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAAGATACTAATAA</genome_strand>
        <mrna_strand>TCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTAAGCTGAACAAGTATTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAGGATACTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271270" ref_strand="+" ref_description="SGN-E271270 [cLEM-5-F3]">
      <seq>tcgttgtcagaatcggctgccgcggctattctgattcaattggtttctgcgattagctattgtcatcatatgggtgtagctcatcgtgacattaagccggataatgtgttgtttgattctgagaatagattgaagcttgctgattttggatctgcggagtggtttgctggttgtgatgggaggaagatgaatggggttgtgggtacgccgtattacgttgcgccggaggttttaatggggaaagagtataatgagaaagttgatgtgtggagtttgggggttattttgtatattatgctttctggggttcctcctttttacggtgaaacgccgactgaaacttttcaagctgttctcagagggaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="73999" stop="74967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74299" g_stop="74667" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E271270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74299" e_stop="74667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTG</genome_strand>
        <mrna_strand>TCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370930" ref_strand="+" ref_description="SGN-E370930 [TUS-27-L1](-)">
      <seq>tggggttgtgggtacgccgtattacgttgcgccggaggttttaatggggaaagagtataatgagaaagttgatgtgtggagtttgggggttattttgtatattatgctttctggggttcctcctttttacggtgaaacgccgactgaaacttttcaagctgttctcagagggaatctgaggtttccgacgaggaatttccggtcagtttcgcctgaagcgaaagatttgttgaggaagatgatatgtaaagatgtttccagaagattttcagctgaacaagtattgagacatccatgggtgcttaatggaggagaaacaagatcaatggttgattgaacttgaacaagatactaataaatactagtagcagtacaaattttgatgataaaaaagcttcttttaatgtgtttgtttgtgtatattgcaccaaaaaaataaaaataaaattatggtttgttatgttgtggagaagaatcttgtagatgataatgaatctcctactttatattataatataacaagaagaaaaaaaatttcaggctatataaaaagatccaagcttaccccacctttatatttattattattatttttaattataaagggttgagggagagagggatatatgtatgttttggtgctgtatcaaagttttgttgttgagtttactatgtaataaaaaaaatttctacttttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="+" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="74190" stop="76068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74490" g_stop="74776" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74777" i_stop="75352" i_length="576">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75353" g_stop="75765" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="700" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="716"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="+" ref_id="SGN-E370930" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74490" e_stop="74776"/>
          <exon e_start="75353" e_stop="75765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGAGTAAGTTAAATTTAATATTTCTGTTCTCCATATCCGTATTCCGTATCGATATGCTTTATTTAAGACGAATTTATCAGAAATAGCCTCGTAGAATCTCTATCTTTAAATACGATTCATAGACATTCTATCCTTTCTAAACTTCACGTGTAGGATTAGTAATTGTTATGACATGAAATGAGCTTAAATAACGATTATTCATACTATTGAATCCCAACTTATTTAAGATTGAGACGTTGTCTTGTTTTAGTTAGTTTAGGAGCTTAGTTTCAATAAAAATTTGTTTCTTTTTTACCCCTTCATAGTGTGCTTTCTTGATGACTCGAACTTACGTAGAATACTTACCTAGAATTAGATGTGAGGGATGTTTACCATCCTAGCAACTCCCAGTCGTTCTTTTTTACCCCTTCATAGTGTGTTTCCTTGATAACTCGAACTTACGTAGAATTGAATGTGAGGGAGGCTTACCATCCCAGCAACTCCCAGTCGTTCGTTCAAAATATTTTCTTGATTGTTCAATTTAGTGTTTTCTCATTGATGAATATTATGTGATGTTGATGTTATTTTTGTTAAATACAGGACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAAGATACTAATAAATACTAGTAGCAGTACAAATTTTGATGATAAAAAAGCTTCTTCTAATGTGTTTGTTTGTGTATATTGCACCAAAAAAATAAAAATAAAATTATGGTTTGTTATGTTGTGGAGAAGAATCTTGTAGATGATAATGAATCTCCTACTTTATATTATAATATAACAAGAAGAAAAAAAATTTCAGGCTATATAAAAAGATCCAAGCTTACCCCACCTTTATATTTATTATTATTATTTTTAATTATAAAGGGTTGAGGGAGAGAGGGATATATGTATGTTTTGGTGCTGTATCAAAGTTTTGTTGTTGAGTTTACTATGTAATAAAAAAAATTTCTACTTTTGTT</genome_strand>
        <mrna_strand>TGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAAGATACTAATAAATACTAGTAGCAGTACAAATTTTGATGATAAAAAAGCTTCTTTTAATGTGTTTGTTTGTGTATATTGCACCAAAAAAATAAAAATAAAATTATGGTTTGTTATGTTGTGGAGAAGAATCTTGTAGATGATAATGAATCTCCTACTTTATATTATAATATAACAAGAAGAAAAAAAATTTCAGGCTATATAAAAAGATCCAAGCTTACCCCACCTTTATATTTATTATTATTATTTTTAATTATAAAGGGTTGAGGGAGAGAGGGATATATGTATGTTTTGGTGCTGTATCAAAGTTTTGTTGTTGAGTTTACTATGTAATAAAAAAAATTTCTACTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>106</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="258" PGL_stop="937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="258" e_stop="937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="258" e_stop="937" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258" stop="937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258" stop="858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258" stop="792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTGAATCCTTAAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</gDNA_template>
            <first_frame> N  R  V  E  M  E  R  V  R  R  E  F  L  C  N  S  S  Q  A  L  K  M  E  S  T  F  D  A  T  N  E  R  E  C  S  V  C  F  F  D  L  H  L  S  A  A  G  C  H  N  C  S  P  D  K  Y  A  C  L  N  H  A  K  Q  L  C  T  C  S  W  G  A  K  F  F  L  F  R  Y  D  I  N  E  L  N  V  L  V  D  A  L  E  G  K  L  S  A  I  Y  R  W  A  R  Q  D  L  G  L  A  L  S  S  Y  V  N  K  E  R  Q  V  A  G  I  A  G  K  L  S  L  K  P  E  E  S  V  L  K  E  A  S  A  G  P  S  I  A  S  V  K  K  E  K  D  D  G  T  S  A  L  L  M  K  A  S  S  S  A  F  S  P  H  K  D  K  L  S  R  E  P  L  A  S  E  S  I  K  A  S  S  M  P  D  N  A  S  H  G  I  E  G  A  Q  N  G  F  Q  G  R  S  E  S  L  K  V  G  P  V  Y  R  T  P  V  T  Q  L  S   </first_frame>
            <second_frame>  T  E  L  R  W  R  E  S  G  G  S  F  F  A  I  L  H  K  H  *  R  W  R  A  L  L  M  L  L  M  R  G  N  V  V  C  V  F  L  I  Y  T  C  P  Q  P  A  V  T  I  V  R  P  T  N  M  H  A  *  T  M  Q  N  N  C  V  L  V  P  G  V  P  N  F  S  S  S  V  M  T  S  M  N  *  M  Y  *  L  M  L  *  K  G  N  *  V  Q  F  I  D  G  Q  D  K  I  L  D  *  L  *  V  L  M  *  I  K  S  G  K  L  Q  G  L  L  V  N  Y  L  L  N  L  R  N  Q  C  *  K  R  Q  V  Q  D  P  L  *  L  P  *  K  R  K  K  M  M  E  L  Q  H  S  *  *  R  P  A  A  V  L  F  H  R  I  K  I  N  Y  P  G  S  H  *  L  Q  N  Q  S  R  R  P  L  C  L  T  M  L  L  M  E  L  R  G  H  R  M  A  S  R  A  E  V  N  P  *  R  W  V  L  F  I  E  L  Q  L  L  S  C  P  </second_frame>
            <third_frame>   P  S  *  D  G  E  S  Q  E  G  V  S  L  Q  F  F  T  S  T  K  D  G  E  H  F  *  C  Y  *  *  E  G  M  *  C  V  F  F  *  S  T  P  V  R  S  R  L  S  Q  L  F  A  R  Q  I  C  M  L  E  P  C  K  T  T  V  Y  L  F  L  G  C  Q  I  F  P  L  P  L  *  H  Q  *  I  K  C  T  S  *  C  F  R  R  E  I  E  C  N  L  S  M  G  K  T  R  S  W  I  S  F  E  F  L  C  K  *  R  A  A  S  C  R  D  C  W  *  I  I  S  *  T  *  G  I  S  A  K  R  G  K  C  R  T  L  Y  S  F  R  E  K  G  K  R  *  W  N  F  S  T  L  D  E  G  Q  Q  Q  C  F  F  T  A  *  R  *  T  I  Q  G  A  I  S  F  R  I  N  Q  G  V  L  Y  A  *  Q  C  F  S  W  N  *  G  G  T  E  W  L  P  G  Q  K  *  I  L  K  G  G  S  C  L  *  N  S  S  Y  S  A  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="258" stop="935"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRVEMERVRREFLCNSSQALKMESTFDATNERECSVCFFDLHLSAAGCHNCSPDKYACLNHAKQLCTCSWGAKFFLFRYDINELNVLVDALEGKLSAIYRWARQDLGLALSSYVNKERQVAGIAGKLSLKPEESVLKEASAGPSIASVKKEKDDGTSALLMKASSSAFSPHKDKLSREPLASESIKASSMPDNASHGIEGAQNGFQGRSESLKVGPVYRTPVTQLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1149" PGL_stop="5136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1149" e_stop="1575"/>
            <exon e_start="1662" e_stop="1765"/>
            <exon e_start="2384" e_stop="2581"/>
            <exon e_start="2760" e_stop="3337"/>
            <exon e_start="5106" e_stop="5136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.717" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.971" e_score="0.991"/>
          <exon-only e_score="0.613"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1149" e_stop="1575" e_length="427"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1576" i_stop="1661" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1662" e_stop="1765" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.717" acc_prob="0.836">
            <gDNA_intron_boundary i_start="1766" i_stop="2383" i_length="618"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2384" e_stop="2581" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.890">
            <gDNA_intron_boundary i_start="2582" i_stop="2759" i_length="178"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="2760" e_stop="3337" e_length="578"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="3338" i_stop="5105" i_length="1768"/>
          </intron>
          <exon e_serial="5" e_score="0.613">
            <gDNA_exon_boundary e_start="5106" e_stop="5136" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1149" stop="1575"/>
              <exon start="1662" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="2924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1149" stop="1575"/>
              <exon start="1662" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="2897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1214" stop="1575"/>
              <exon start="1662" stop="1765"/>
              <exon start="2384" stop="2561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1311" stop="1575"/>
              <exon start="1662" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1311" stop="1575"/>
              <exon start="1662" stop="1765"/>
              <exon start="2384" stop="2431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1672" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="3056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1672" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="2929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1677" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="2903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1727" stop="1765"/>
              <exon start="2384" stop="2581"/>
              <exon start="2760" stop="3233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2431" stop="2581"/>
              <exon start="2760" stop="3303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2461" stop="2581"/>
              <exon start="2760" stop="3223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2516" stop="2581"/>
              <exon start="2760" stop="3318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434658" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2771" stop="3337"/>
              <exon start="5106" stop="5136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2965" stop="3337"/>
              <exon start="5106" stop="5136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCACTAAAGATGGAATTAATTGTTCACCTAGTTCAGAGAGCATGAAAGTTGAGGATAATTCAAAAGATGAAATACATCGTGGACCTAATCAAGATACTCATTCTTTCATTGGAGGTTCGTCTGTAAATATGGATATTGATAGACATGCCCAAGCCCCTCAGGTTGCAGATACTTGTCCTCAGTCCCGTCAACCATTCGACTGTAAACCAAATAAAGAAGGTAGCCAGAATAAGACCATGGAGTGTGCACAACCTTTATCAGGTGACTCTCCCGTCTCTCAAAACAATTTGGACAGAGGTTTTCGCCAGAAAGGTCCTCGGATTGCAAAAGTGGTGAGGAGACTCGCTTGTAATGTGGAACCTCTGGATTATGGAGTTATCCAGCCTGGGAAGTTATGGTGTGACAACCGGGTTATTTATCCCAAGG : GATTCAGGAGCCGGGTCAGATACATTGATGTTTTAGATCCAACAAATATGTCTCACTATATTTCTGAAGTTATAGATGCAGGACGAGATGGCCCACTGTTTATG : GTTACACTTGAGCGTTGTCCCAATGAAGTGTTTGTTCACTTGTCCCCTGTTAAATGCTGGGATATGGTCCGCGAGAGAGTGAATCAAGAAATTTTAAAGCAACATAAGTTGGGAAAGCCAAAGCTTTTGCCTTTGCAACCACCTGGAAGTGTTGAGGGCATGGAAATGTTTGGTTTTTCAACAACAGAGATTGTACAG : GCCATTCAAGATATGGATATAAACCGGGTATGTTCTGAATTCTGGAAATCTAAACCCTTGATGCAGACTGTACAATCTTCCCTAGTTGTGGACCGTTCAAAACTCAATATAAAATCCGAGATCTCAAATGATCCTACTCGAGCTGATATAGTTCTGAGTGGCCTACTTAAGAAGGCAAACTGTGAAGAACTTCATGCATTGAACAATCTTCTCAAAACCAATAATTTGACCCCTAATCAAGGTTTAATGACTCGACTTCTTAATGAAGAGATTGATAAGCGAGGTAGATGATTTTGATTTTCAGCCTCGTCGAGGCCTGGACTTCTCATAAGGAGTTAACCCTGTAAATGCTTAAGTCACATTCTAGTTTTAGGTTAAATTGCATTAGGTTAACCCCATTTCTTGAATTTTTGCACTGGCTCTTAACAGGAAGATGAAAAAAGGCTGGCACATAGTTACTTTTGGACTTTTGGTTCTTGAAATTCTTTTGAGGAAGGTTATTGAAAATAGAAAATACATTTTTCAATCTTTGTTATAGAAAAGTTCCTTAATTTATACTTGGAGATGTGAGTTTAAAA : AAACACAATTTATACAAACAGAAACGAGAAA</gDNA_template>
            <first_frame> V  T  K  D  G  I  N  C  S  P  S  S  E  S  M  K  V  E  D  N  S  K  D  E  I  H  R  G  P  N  Q  D  T  H  S  F  I  G  G  S  S  V  N  M  D  I  D  R  H  A  Q  A  P  Q  V  A  D  T  C  P  Q  S  R  Q  P  F  D  C  K  P  N  K  E  G  S  Q  N  K  T  M  E  C  A  Q  P  L  S  G  D  S  P  V  S  Q  N  N  L  D  R  G  F  R  Q  K  G  P  R  I  A  K  V  V  R  R  L  A  C  N  V  E  P  L  D  Y  G  V  I  Q  P  G  K  L  W  C  D  N  R  V  I  Y  P  K   : G  F  R  S  R  V  R  Y  I  D  V  L  D  P  T  N  M  S  H  Y  I  S  E  V  I  D  A  G  R  D  G  P  L  F  M  :  V  T  L  E  R  C  P  N  E  V  F  V  H  L  S  P  V  K  C  W  D  M  V  R  E  R  V  N  Q  E  I  L  K  Q  H  K  L  G  K  P  K  L  L  P  L  Q  P  P  G  S  V  E  G  M  E  M  F  G  F  S  T  T  E  I  V  Q  :  A  I  Q  D  M  D  I  N  R  V  C  S  E  F  W  K  S  K  P  L  M  Q  T  V  Q  S  S  L  V  V  D  R  S  K  L  N  I  K  S  E  I  S  N  D  P  T  R  A  D  I  V  L  S  G  L  L  K  K  A  N  C  E  E  L  H  A  L  N  N  L  L  K  T  N  N  L  T  P  N  Q  G  L  M  T  R  L  L  N  E  E  I  D  K  R  G  R  *  F  *  F  S  A  S  S  R  P  G  L  L  I  R  S  *  P  C  K  C  L  S  H  I  L  V  L  G  *  I  A  L  G  *  P  H  F  L  N  F  C  T  G  S  *  Q  E  D  E  K  R  L  A  H  S  Y  F  W  T  F  G  S  *  N  S  F  E  E  G  Y  *  K  *  K  I  H  F  S  I  F  V  I  E  K  F  L  N  L  Y  L  E  M  *  V  *  K :   N  T  I  Y  T  N  R  N  E  K </first_frame>
            <second_frame>  S  L  K  M  E  L  I  V  H  L  V  Q  R  A  *  K  L  R  I  I  Q  K  M  K  Y  I  V  D  L  I  K  I  L  I  L  S  L  E  V  R  L  *  I  W  I  L  I  D  M  P  K  P  L  R  L  Q  I  L  V  L  S  P  V  N  H  S  T  V  N  Q  I  K  K  V  A  R  I  R  P  W  S  V  H  N  L  Y  Q  V  T  L  P  S  L  K  T  I  W  T  E  V  F  A  R  K  V  L  G  L  Q  K  W  *  G  D  S  L  V  M  W  N  L  W  I  M  E  L  S  S  L  G  S  Y  G  V  T  T  G  L  F  I  P  R  :  D  S  G  A  G  S  D  T  L  M  F  *  I  Q  Q  I  C  L  T  I  F  L  K  L  *  M  Q  D  E  M  A  H  C  L  W :   L  H  L  S  V  V  P  M  K  C  L  F  T  C  P  L  L  N  A  G  I  W  S  A  R  E  *  I  K  K  F  *  S  N  I  S  W  E  S  Q  S  F  C  L  C  N  H  L  E  V  L  R  A  W  K  C  L  V  F  Q  Q  Q  R  L  Y  R :   P  F  K  I  W  I  *  T  G  Y  V  L  N  S  G  N  L  N  P  *  C  R  L  Y  N  L  P  *  L  W  T  V  Q  N  S  I  *  N  P  R  S  Q  M  I  L  L  E  L  I  *  F  *  V  A  Y  L  R  R  Q  T  V  K  N  F  M  H  *  T  I  F  S  K  P  I  I  *  P  L  I  K  V  *  *  L  D  F  L  M  K  R  L  I  S  E  V  D  D  F  D  F  Q  P  R  R  G  L  D  F  S  *  G  V  N  P  V  N  A  *  V  T  F  *  F  *  V  K  L  H  *  V  N  P  I  S  *  I  F  A  L  A  L  N  R  K  M  K  K  G  W  H  I  V  T  F  G  L  L  V  L  E  I  L  L  R  K  V  I  E  N  R  K  Y  I  F  Q  S  L  L  *  K  S  S  L  I  Y  T  W  R  C  E  F  K   : K  T  Q  F  I  Q  T  E  T  R   </second_frame>
            <third_frame>   H  *  R  W  N  *  L  F  T  *  F  R  E  H  E  S  *  G  *  F  K  R  *  N  T  S  W  T  *  S  R  Y  S  F  F  H  W  R  F  V  C  K  Y  G  Y  *  *  T  C  P  S  P  S  G  C  R  Y  L  S  S  V  P  S  T  I  R  L  *  T  K  *  R  R  *  P  E  *  D  H  G  V  C  T  T  F  I  R  *  L  S  R  L  S  K  Q  F  G  Q  R  F  S  P  E  R  S  S  D  C  K  S  G  E  E  T  R  L  *  C  G  T  S  G  L  W  S  Y  P  A  W  E  V  M  V  *  Q  P  G  Y  L  S  Q  G :   I  Q  E  P  G  Q  I  H  *  C  F  R  S  N  K  Y  V  S  L  Y  F  *  S  Y  R  C  R  T  R  W  P  T  V  Y   : G  Y  T  *  A  L  S  Q  *  S  V  C  S  L  V  P  C  *  M  L  G  Y  G  P  R  E  S  E  S  R  N  F  K  A  T  *  V  G  K  A  K  A  F  A  F  A  T  T  W  K  C  *  G  H  G  N  V  W  F  F  N  N  R  D  C  T   : G  H  S  R  Y  G  Y  K  P  G  M  F  *  I  L  E  I  *  T  L  D  A  D  C  T  I  F  P  S  C  G  P  F  K  T  Q  Y  K  I  R  D  L  K  *  S  Y  S  S  *  Y  S  S  E  W  P  T  *  E  G  K  L  *  R  T  S  C  I  E  Q  S  S  Q  N  Q  *  F  D  P  *  S  R  F  N  D  S  T  S  *  *  R  D  *  *  A  R  *  M  I  L  I  F  S  L  V  E  A  W  T  S  H  K  E  L  T  L  *  M  L  K  S  H  S  S  F  R  L  N  C  I  R  L  T  P  F  L  E  F  L  H  W  L  L  T  G  R  *  K  K  A  G  T  *  L  L  L  D  F  W  F  L  K  F  F  *  G  R  L  L  K  I  E  N  T  F  F  N  L  C  Y  R  K  V  P  *  F  I  L  G  D  V  S  L  K  :  K  H  N  L  Y  K  Q  K  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1149" stop="1575"/>
                    <exon start="1662" stop="1765"/>
                    <exon start="2384" stop="2581"/>
                    <exon start="2760" stop="3050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTKDGINCSPSSESMKVEDNSKDEIHRGPNQDTHSFIGGSSVNMDIDRHAQAPQVADTCPQSRQPFDCKPNKEGSQNKTMECAQPLSGDSPVSQNNLDRGFRQKGPRIAKVVRRLACNVEPLDYGVIQPGKLWCDNRVIYPKGFRSRVRYIDVLDPTNMSHYISEVIDAGRDGPLFMVTLERCPNEVFVHLSPVKCWDMVRERVNQEILKQHKLGKPKLLPLQPPGSVEGMEMFGFSTTEIVQAIQDMDINRVCSEFWKSKPLMQTVQSSLVVDRSKLNIKSEISNDPTRADIVLSGLLKKANCEELHALNNLLKTNNLTPNQGLMTRLLNEEIDKRGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13988" PGL_stop="13340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13988" e_stop="13340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13988" e_stop="13340" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13988" stop="13340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13987" stop="13517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTGCTAAAAAAGGCAGAACGTCAGTTGGCAGACCATCAACTCTTGCTCTTCTCCCCTCCAGCGTCAACAACAATTCAACTAGTTCTGCTGCTAAGAAGAAGCAAAAACGAAAGAGATTATCAAGATTATGCTGATTGCTTGTGGAAGATGGACAAATTTCTCATATGGAACTTTGCATGGGTGCCAACTTTTTTCCCGGCAGCTACAGCCCTGGCCGTTTCATTTGCCAATGACTATTCCGCGCTTGATTCCTTGATCATATCCCATCAGTTGGTTCCCTGAATACCTAATATTCCCATTTGGTGCTGTTTTAACCAACATGATGTCGCCACCAACCAGACAGTCAGATCAATGCCAATCCTCGTGTATCAAGCAATTGACTGGTTTCAAGAAATGACCAGAGAAATTTGCTCATCCAGCAAGAAACTTACCGGTGAATGTGAAATCAGAGCTTCGTTGGTGTAGATGCAAGGTGATTTTGTGGCTACATCAGAAATTATCTGCGAGTATGTTCTCTTCTAGCTTGAGATTTTAGAAAAATTGACCTTTGAACCCGGTATGTTTTCACTTGTCCTAATCATCTACACAAATCTGGAAGCAGAAATTTTGTAGAAAATGAATGTTCATATGGATGATTCTCTTATTG</gDNA_template>
            <first_frame> G  L  L  K  K  A  E  R  Q  L  A  D  H  Q  L  L  L  F  S  P  P  A  S  T  T  I  Q  L  V  L  L  L  R  R  S  K  N  E  R  D  Y  Q  D  Y  A  D  C  L  W  K  M  D  K  F  L  I  W  N  F  A  W  V  P  T  F  F  P  A  A  T  A  L  A  V  S  F  A  N  D  Y  S  A  L  D  S  L  I  I  S  H  Q  L  V  P  *  I  P  N  I  P  I  W  C  C  F  N  Q  H  D  V  A  T  N  Q  T  V  R  S  M  P  I  L  V  Y  Q  A  I  D  W  F  Q  E  M  T  R  E  I  C  S  S  S  K  K  L  T  G  E  C  E  I  R  A  S  L  V  *  M  Q  G  D  F  V  A  T  S  E  I  I  C  E  Y  V  L  F  *  L  E  I  L  E  K  L  T  F  E  P  G  M  F  S  L  V  L  I  I  Y  T  N  L  E  A  E  I  L  *  K  M  N  V  H  M  D  D  S  L  I  </first_frame>
            <second_frame>  G  C  *  K  R  Q  N  V  S  W  Q  T  I  N  S  C  S  S  P  L  Q  R  Q  Q  Q  F  N  *  F  C  C  *  E  E  A  K  T  K  E  I  I  K  I  M  L  I  A  C  G  R  W  T  N  F  S  Y  G  T  L  H  G  C  Q  L  F  S  R  Q  L  Q  P  W  P  F  H  L  P  M  T  I  P  R  L  I  P  *  S  Y  P  I  S  W  F  P  E  Y  L  I  F  P  F  G  A  V  L  T  N  M  M  S  P  P  T  R  Q  S  D  Q  C  Q  S  S  C  I  K  Q  L  T  G  F  K  K  *  P  E  K  F  A  H  P  A  R  N  L  P  V  N  V  K  S  E  L  R  W  C  R  C  K  V  I  L  W  L  H  Q  K  L  S  A  S  M  F  S  S  S  L  R  F  *  K  N  *  P  L  N  P  V  C  F  H  L  S  *  S  S  T  Q  I  W  K  Q  K  F  C  R  K  *  M  F  I  W  M  I  L  L  L </second_frame>
            <third_frame>   V  A  K  K  G  R  T  S  V  G  R  P  S  T  L  A  L  L  P  S  S  V  N  N  N  S  T  S  S  A  A  K  K  K  Q  K  R  K  R  L  S  R  L  C  *  L  L  V  E  D  G  Q  I  S  H  M  E  L  C  M  G  A  N  F  F  P  G  S  Y  S  P  G  R  F  I  C  Q  *  L  F  R  A  *  F  L  D  H  I  P  S  V  G  S  L  N  T  *  Y  S  H  L  V  L  F  *  P  T  *  C  R  H  Q  P  D  S  Q  I  N  A  N  P  R  V  S  S  N  *  L  V  S  R  N  D  Q  R  N  L  L  I  Q  Q  E  T  Y  R  *  M  *  N  Q  S  F  V  G  V  D  A  R  *  F  C  G  Y  I  R  N  Y  L  R  V  C  S  L  L  A  *  D  F  R  K  I  D  L  *  T  R  Y  V  F  T  C  P  N  H  L  H  K  S  G  S  R  N  F  V  E  N  E  C  S  Y  G  *  F  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13988" stop="13704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLLKKAERQLADHQLLLFSPPASTTIQLVLLLRRSKNERDYQDYADCLWKMDKFLIWNFAWVPTFFPAATALAVSFANDYSALDSLIISHQLVP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="15641" PGL_stop="14533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15641" e_stop="15524"/>
            <exon e_start="15445" e_stop="15246"/>
            <exon e_start="15158" e_stop="14914"/>
            <exon e_start="14645" e_stop="14533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.755" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="0.970"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="0.980"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="15641" e_stop="15524" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.755">
            <gDNA_intron_boundary i_start="15523" i_stop="15446" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="15445" e_stop="15246" e_length="200"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="15245" i_stop="15159" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="15158" e_stop="14914" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14913" i_stop="14646" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="14645" e_stop="14533" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15641" stop="15524"/>
              <exon start="15445" stop="15246"/>
              <exon start="15158" stop="14914"/>
              <exon start="14645" stop="14533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATGATCCATTCATCTTAGGTGTCCAAACTGAATGGCAGTTACTACAAATGATTCGTTTTGGACATCGTAGTCTCATAGCCGCTGATTCAACATTTGGAATAAAGAAACTAAAG : TATCCTTTGTGCACACTTCTTGTGTTTGACTCAAGACAGCATGCCCTTCCTGTTGCTTGGATCATCACCCGCACAATTGCCAAGCCTGACGTGAGTAAATGGATGAAAGCTCTGCATGATCGTGTCCTTGCTGTTGATCCAACATGGAAAGTCAATGGTTTTCTAGTCGATGATGCTGCTGCAGAAATTGACCCCATAAG : GGAGATATTTTCATGTGCGGTTCTATTTTCACTTTGGCGGATCCGTAGAGCATGGTTGAGAAATATCATCAAGAAATGTAGTAATATTGAAGTTCAAAGAGAGATATTTAAGCGTCTAGGGAACATAGTGTACAGAATTTGGGATGGAACTGATCCTTTTGTTGCTTTAGAAGAACTTTCTCAAGATTTTGTTGATCAAATAGCCTTCTTGCAGTATTTCAAAGCCACATGGGTGCCGAAATTTG : AAATGTGGGTTACTACAATGAAGACGTTACCTCTTGCGAGCCAGGAAGCATCTGGTGCAATAGAAGCATATCATGTCAAGCTGAAAGTAAGACTATATGATGATTCACATCTT</gDNA_template>
            <first_frame> R  K  *  S  I  H  L  R  C  P  N  *  M  A  V  T  T  N  D  S  F  W  T  S  *  S  H  S  R  *  F  N  I  W  N  K  E  T  K   : V  S  F  V  H  T  S  C  V  *  L  K  T  A  C  P  S  C  C  L  D  H  H  P  H  N  C  Q  A  *  R  E  *  M  D  E  S  S  A  *  S  C  P  C  C  *  S  N  M  E  S  Q  W  F  S  S  R  *  C  C  C  R  N  *  P  H  K  :  G  D  I  F  M  C  G  S  I  F  T  L  A  D  P  *  S  M  V  E  K  Y  H  Q  E  M  *  *  Y  *  S  S  K  R  D  I  *  A  S  R  E  H  S  V  Q  N  L  G  W  N  *  S  F  C  C  F  R  R  T  F  S  R  F  C  *  S  N  S  L  L  A  V  F  Q  S  H  M  G  A  E  I  * :   N  V  G  Y  Y  N  E  D  V  T  S  C  E  P  G  S  I  W  C  N  R  S  I  S  C  Q  A  E  S  K  T  I  *  *  F  T  S  </first_frame>
            <second_frame>  E  N  D  P  F  I  L  G  V  Q  T  E  W  Q  L  L  Q  M  I  R  F  G  H  R  S  L  I  A  A  D  S  T  F  G  I  K  K  L  K  :  Y  P  L  C  T  L  L  V  F  D  S  R  Q  H  A  L  P  V  A  W  I  I  T  R  T  I  A  K  P  D  V  S  K  W  M  K  A  L  H  D  R  V  L  A  V  D  P  T  W  K  V  N  G  F  L  V  D  D  A  A  A  E  I  D  P  I  R :   E  I  F  S  C  A  V  L  F  S  L  W  R  I  R  R  A  W  L  R  N  I  I  K  K  C  S  N  I  E  V  Q  R  E  I  F  K  R  L  G  N  I  V  Y  R  I  W  D  G  T  D  P  F  V  A  L  E  E  L  S  Q  D  F  V  D  Q  I  A  F  L  Q  Y  F  K  A  T  W  V  P  K  F   : E  M  W  V  T  T  M  K  T  L  P  L  A  S  Q  E  A  S  G  A  I  E  A  Y  H  V  K  L  K  V  R  L  Y  D  D  S  H  L </second_frame>
            <third_frame>   K  M  I  H  S  S  *  V  S  K  L  N  G  S  Y  Y  K  *  F  V  L  D  I  V  V  S  *  P  L  I  Q  H  L  E  *  R  N  *  S :   I  L  C  A  H  F  L  C  L  T  Q  D  S  M  P  F  L  L  L  G  S  S  P  A  Q  L  P  S  L  T  *  V  N  G  *  K  L  C  M  I  V  S  L  L  L  I  Q  H  G  K  S  M  V  F  *  S  M  M  L  L  Q  K  L  T  P  *   : G  R  Y  F  H  V  R  F  Y  F  H  F  G  G  S  V  E  H  G  *  E  I  S  S  R  N  V  V  I  L  K  F  K  E  R  Y  L  S  V  *  G  T  *  C  T  E  F  G  M  E  L  I  L  L  L  L  *  K  N  F  L  K  I  L  L  I  K  *  P  S  C  S  I  S  K  P  H  G  C  R  N  L  :  K  C  G  L  L  Q  *  R  R  Y  L  L  R  A  R  K  H  L  V  Q  *  K  H  I  M  S  S  *  K  *  D  Y  M  M  I  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15640" stop="15524"/>
                    <exon start="15445" stop="15246"/>
                    <exon start="15158" stop="14914"/>
                    <exon start="14645" stop="14533"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENDPFILGVQTEWQLLQMIRFGHRSLIAADSTFGIKKLKYPLCTLLVFDSRQHALPVAWIITRTIAKPDVSKWMKALHDRVLAVDPTWKVNGFLVDDAAAEIDPIREIFSCAVLFSLWRIRRAWLRNIIKKCSNIEVQREIFKRLGNIVYRIWDGTDPFVALEELSQDFVDQIAFLQYFKATWVPKFEMWVTTMKTLPLASQEASGAIEAYHVKLKVRLYDDSHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20911" PGL_stop="15835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20911" e_stop="20834"/>
            <exon e_start="18233" e_stop="17952"/>
            <exon e_start="16175" e_stop="15835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20911" e_stop="20834" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20833" i_stop="18234" i_length="2600"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18233" e_stop="17952" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17951" i_stop="16176" i_length="1776"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="16175" e_stop="15835" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20911" stop="20834"/>
              <exon start="18233" stop="17952"/>
              <exon start="16175" stop="15835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAAGAAGAAAGAATCTTTAATACTCTAATAATTTGCTTACTTCACCACAAGAACAAGAATTCTTCTTCTGGG : AATATTTTAGAAGATGGAGATAGTTGAGTCCATTCCTGATCTTGCCGTGCAAGATCCGCCTGGTGAAGACTTCTCGGCATCTGATTTGAGTTGGACCAAATTCGGAACTGAAGAACGACATGATGATGTTGCCCTTATTCATTATGATCGAGTTGATGCCTTTATCATTGGAGAGTGTTGTAATGTGGAATTCCCAACAAGGTTTCACATTGAGAGGGGAAGGAAAAGAAGCAAAGGCAGTTTAAAGGAGTACAAGCCTGATGAATATTTGGAGCACAGGCT : GTATTGGTGTTCCTTTGGCCCAGAAAATTACGGAGAAGGTGGTGGTATTTTACCAAGTCGACGATATAGGCTTAACACTCGAAACCGTGCCGCTAGACCCCAGTCAATGAGGGGCTGCACTTGTCATTTTATAGTGAAGCGTTTGTATGCCCGTCCATCTCTTGCACTTCTTATATATAACAACAGGCGTCATGTTAACAAGTCTGGTTTTGTATGCCATGGGCCACTTGATAGAGATGCTATTGGCCCTGGTGCAAAAAATATACCTTACATTTGCAATGAGATTCAACAGCAAACTATGTCTATGATCTATCTTGGCATTCCCGAGGAGAATGTTTTAG</gDNA_template>
            <first_frame> K  K  E  E  E  R  I  F  N  T  L  I  I  C  L  L  H  H  K  N  K  N  S  S  S  G  :  N  I  L  E  D  G  D  S  *  V  H  S  *  S  C  R  A  R  S  A  W  *  R  L  L  G  I  *  F  E  L  D  Q  I  R  N  *  R  T  T  *  *  C  C  P  Y  S  L  *  S  S  *  C  L  Y  H  W  R  V  L  *  C  G  I  P  N  K  V  S  H  *  E  G  K  E  K  K  Q  R  Q  F  K  G  V  Q  A  *  *  I  F  G  A  Q  A  :  V  L  V  F  L  W  P  R  K  L  R  R  R  W  W  Y  F  T  K  S  T  I  *  A  *  H  S  K  P  C  R  *  T  P  V  N  E  G  L  H  L  S  F  Y  S  E  A  F  V  C  P  S  I  S  C  T  S  Y  I  *  Q  Q  A  S  C  *  Q  V  W  F  C  M  P  W  A  T  *  *  R  C  Y  W  P  W  C  K  K  Y  T  L  H  L  Q  *  D  S  T  A  N  Y  V  Y  D  L  S  W  H  S  R  G  E  C  F   </first_frame>
            <second_frame>  K  K  K  K  K  E  S  L  I  L  *  *  F  A  Y  F  T  T  R  T  R  I  L  L  L  G :   I  F  *  K  M  E  I  V  E  S  I  P  D  L  A  V  Q  D  P  P  G  E  D  F  S  A  S  D  L  S  W  T  K  F  G  T  E  E  R  H  D  D  V  A  L  I  H  Y  D  R  V  D  A  F  I  I  G  E  C  C  N  V  E  F  P  T  R  F  H  I  E  R  G  R  K  R  S  K  G  S  L  K  E  Y  K  P  D  E  Y  L  E  H  R  L :   Y  W  C  S  F  G  P  E  N  Y  G  E  G  G  G  I  L  P  S  R  R  Y  R  L  N  T  R  N  R  A  A  R  P  Q  S  M  R  G  C  T  C  H  F  I  V  K  R  L  Y  A  R  P  S  L  A  L  L  I  Y  N  N  R  R  H  V  N  K  S  G  F  V  C  H  G  P  L  D  R  D  A  I  G  P  G  A  K  N  I  P  Y  I  C  N  E  I  Q  Q  Q  T  M  S  M  I  Y  L  G  I  P  E  E  N  V  L  </second_frame>
            <third_frame>   K  R  R  R  K  N  L  *  Y  S  N  N  L  L  T  S  P  Q  E  Q  E  F  F  F  W   : E  Y  F  R  R  W  R  *  L  S  P  F  L  I  L  P  C  K  I  R  L  V  K  T  S  R  H  L  I  *  V  G  P  N  S  E  L  K  N  D  M  M  M  L  P  L  F  I  M  I  E  L  M  P  L  S  L  E  S  V  V  M  W  N  S  Q  Q  G  F  T  L  R  G  E  G  K  E  A  K  A  V  *  R  S  T  S  L  M  N  I  W  S  T  G   : C  I  G  V  P  L  A  Q  K  I  T  E  K  V  V  V  F  Y  Q  V  D  D  I  G  L  T  L  E  T  V  P  L  D  P  S  Q  *  G  A  A  L  V  I  L  *  *  S  V  C  M  P  V  H  L  L  H  F  L  Y  I  T  T  G  V  M  L  T  S  L  V  L  Y  A  M  G  H  L  I  E  M  L  L  A  L  V  Q  K  I  Y  L  T  F  A  M  R  F  N  S  K  L  C  L  *  S  I  L  A  F  P  R  R  M  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18223" stop="17952"/>
                    <exon start="16175" stop="15836"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEIVESIPDLAVQDPPGEDFSASDLSWTKFGTEERHDDVALIHYDRVDAFIIGECCNVEFPTRFHIERGRKRSKGSLKEYKPDEYLEHRLYWCSFGPENYGEGGGILPSRRYRLNTRNRAARPQSMRGCTCHFIVKRLYARPSLALLIYNNRRHVNKSGFVCHGPLDRDAIGPGAKNIPYICNEIQQQTMSMIYLGIPEENVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28243" PGL_stop="22403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27758" e_stop="27734"/>
            <exon e_start="27614" e_stop="27553"/>
            <exon e_start="26366" e_stop="25914"/>
            <exon e_start="25476" e_stop="25365"/>
            <exon e_start="24847" e_stop="24797"/>
            <exon e_start="24579" e_stop="24508"/>
            <exon e_start="24435" e_stop="24303"/>
            <exon e_start="24227" e_stop="24169"/>
            <exon e_start="23519" e_stop="23419"/>
            <exon e_start="22812" e_stop="22746"/>
            <exon e_start="22659" e_stop="22403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.532" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27758" e_stop="27734" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="27733" i_stop="27615" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27614" e_stop="27553" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26366" e_stop="25914" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.578">
            <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25365" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24847" e_stop="24797" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.532">
            <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24579" e_stop="24508" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24435" e_stop="24303" e_length="133"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24227" e_stop="24169" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23419" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22812" e_stop="22746" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.917">
            <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="22659" e_stop="22403" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27758" stop="27734"/>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27746" stop="27734"/>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25999" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24511" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24434" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24322" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAGTTGGGAAGTGAAAAAAAAT : TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA : TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA : CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT : GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG : GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG : GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG : CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT : GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG : AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG : CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</gDNA_template>
            <first_frame> I  E  L  G  S  E  K  K   : F  E  *  I  V  S  L  A  L  L  E  L  K  N  Q  R  R  E  A  Y  K  :  F  S  E  D  G  G  K  N  C  G  S  S  L  R  H  R  H  *  T  N  *  S  H  A  E  R  N  G  E  C  *  S  G  *  *  C  L  R  L  *  S  N  S  P  T  P  *  S  R  D  G  K  D  N  G  Q  G  S  R  I  I  C  S  F  W  H  Y  G  *  P  Y  Q  C  A  D  S  L  P  N  Q  G  Q  *  D  Y  S  R  *  L  F  P  Y  P  Y  L  *  K  W  R  H  F  H  P  W  R  C  S  S  K  D  S  E  E  Q  *  R  W  Y  D  G  S  *  S  D  *  S  C  D  S  R  S  *  L  *  N  M  L  P  N  H  *  A  D  L  L  G  E  F  A  S  S  :  L  R  G  Q  M  P  F  C  G  V  H  R  Q  S  W  R  A  S  K  E  V  W  S  E  A  P  H  *  W  S  S  Y  I  Q  C  I  S   : C  T  W  S  A  C  S  *  A  C  T  G  S  *  F  S  F   : G  M  L  I  K  R  S  W  C  S  S  W  I  C  D  C  W  F  E  E  L  H  C  Q   : G  Q  N  P  E  E  D  S  R  R  W  N  E  A  N  W  S  P  L  R  C  C  F  Y  R  F  T  R  E  S  C  *  A  G  R  R  S  Q  K  G  *  D  F  G  C :   G  T  *  Q  N  Q  R  A  *  S  *  C  C  H  C  R  D  Q  H   : C  I  L  R  H  T  E  G  V  K  D  Q  *  S  R  V  G  Q  D  F  G  T  I  W  F  T  Y  T  T  R  R  P  T  E  :  S  Q  I  C  S  T  P  P  D  F  R  K  *  C  T  L  C  S  V  L  H  S   : A  S  F  S  R  S  G  *  R  K  W  *  Q  V  T  G  *  I  G  F  R  H  D  L  F  L  L  E  T  V  P  N  V  Y  M  G  E  R  P  V  S  F  S  N  F  S  Q  I  F  K  L  L  I  S  C  P  F  N  D  Q  K  T  L  F  V  L  H  M  F  V  V  G  L  V  C  P  N  D  L  V  R  N  E  C  W  L </first_frame>
            <second_frame>  L  S  W  E  V  K  K  N  :  L  S  E  L  S  L  *  H  C  L  N  *  R  I  R  E  E  K  L  I  N :   S  V  K  M  V  V  R  T  V  D  L  R  S  D  T  V  T  R  P  T  E  A  M  R  N  A  M  A  N  A  E  V  D  D  D  V  L  G  Y  D  P  T  A  Q  R  L  E  A  E  M  A  R  I  T  G  K  E  A  G  L  F  V  P  S  G  T  M  G  N  L  I  S  V  L  T  H  C  Q  I  R  G  S  E  I  I  L  G  D  Y  S  H  I  H  I  Y  E  N  G  G  I  S  T  L  G  G  V  H  P  R  T  V  K  N  N  E  D  G  T  M  D  L  D  L  I  E  A  A  I  R  D  P  S  F  E  I  C  Y  P  T  T  R  L  I  C  L  E  N  S  Q  A  H :   S  G  G  R  C  L  S  A  E  Y  T  D  K  V  G  E  L  A  K  K  Y  G  L  K  L  H  I  D  G  A  R  I  F  N  A  S  V  :  A  L  G  V  P  V  H  R  L  V  Q  A  A  D  S  V  S  :  V  C  L  S  K  G  L  G  A  P  V  G  S  V  I  V  G  S  K  S  F  I  A  R  :  A  K  I  L  R  K  T  L  G  G  G  M  R  Q  I  G  V  L  C  A  A  A  F  T  A  L  Q  E  N  L  V  K  L  E  G  D  H  R  K  A  K  I  L  A   : A  E  L  N  K  I  K  G  L  K  V  D  V  A  T  V  E  T  N  I  :  V  Y  C  D  I  L  K  G  S  R  I  S  E  A  E  L  V  K  T  L  E  Q  Y  G  L  L  I  L  P  E  G  P  L  R :   V  R  F  V  L  H  H  Q  I  S  E  S  D  V  H  Y  A  V  S  C  I  Q  :  R  A  L  A  G  V  A  E  E  N  G  D  K  *  P  D  K  S  V  S  D  M  I  S  F  C  *  K  L  F  Q  M  F  T  W  E  R  D  Q  F  H  F  Q  I  L  V  K  S  L  N  F  S  F  H  V  L  L  M  I  K  R  L  C  L  F  F  I  C  L  L  L  D  *  F  V  L  M  I  *  *  E  M  N  V  G   </second_frame>
            <third_frame>   *  V  G  K  *  K  K  I :   *  V  N  C  L  S  S  I  A  *  I  E  E  S  E  K  R  S  L  *   : I  Q  *  R  W  W  *  E  L  W  I  F  A  Q  T  P  S  L  D  Q  L  K  P  C  G  T  Q  W  R  M  L  K  W  M  M  M  S  *  V  M  I  Q  Q  P  N  A  L  K  Q  R  W  Q  G  *  R  A  R  K  Q  D  Y  L  F  L  L  A  L  W  V  T  L  S  V  C  *  L  I  A  K  S  G  A  V  R  L  F  S  V  I  I  P  I  S  I  F  M  K  M  E  A  F  P  P  L  E  V  F  I  Q  G  Q  *  R  T  M  K  M  V  R  W  I  L  I  *  L  K  L  R  F  E  I  L  A  L  K  Y  V  T  Q  P  L  G  *  S  A  W  R  I  R  K  L   : T  Q  G  A  D  A  F  L  R  S  T  Q  T  K  L  E  S  *  Q  R  S  M  V  *  S  S  T  L  M  E  L  V  Y  S  M  H  Q  L :   H  L  E  C  L  F  I  G  L  Y  R  Q  L  I  Q  F  R :   Y  A  Y  Q  K  V  L  V  L  Q  L  D  L  *  L  L  V  R  R  A  S  L  P  G :   P  K  S  *  G  R  L  *  A  V  E  *  G  K  L  E  S  F  A  L  L  L  L  P  L  Y  K  R  I  L  L  S  W  K  E  I  T  E  R  L  R  F  W  L  :  R  N  L  T  K  S  K  G  L  K  L  M  L  P  L  *  R  P  T  L :   Y  I  A  T  Y  *  R  G  Q  G  S  V  K  Q  S  W  S  R  L  W  N  N  M  V  Y  L  Y  Y  Q  K  A  H  *   : E  S  D  L  F  Y  T  T  R  F  Q  K  V  M  Y  T  M  Q  C  L  A  F  S :   E  L  *  Q  E  W  L  K  K  M  V  T  S  N  R  I  N  R  F  Q  T  *  S  L  S  V  R  N  C  S  K  C  L  H  G  R  E  T  S  F  I  F  K  F  *  S  N  L  *  T  S  H  F  M  S  F  *  *  S  K  D  F  V  C  S  S  Y  V  C  C  W  T  S  L  S  *  *  F  S  K  K  *  M  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27578" stop="27553"/>
                    <exon start="26366" stop="25914"/>
                    <exon start="25476" stop="25365"/>
                    <exon start="24847" stop="24797"/>
                    <exon start="24579" stop="24508"/>
                    <exon start="24435" stop="24303"/>
                    <exon start="24227" stop="24169"/>
                    <exon start="23519" stop="23419"/>
                    <exon start="22812" stop="22746"/>
                    <exon start="22659" stop="22618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIREEKLINSVKMVVRTVDLRSDTVTRPTEAMRNAMANAEVDDDVLGYDPTAQRLEAEMARITGKEAGLFVPSGTMGNLISVLTHCQIRGSEIILGDYSHIHIYENGGISTLGGVHPRTVKNNEDGTMDLDLIEAAIRDPSFEICYPTTRLICLENSQAHSGGRCLSAEYTDKVGELAKKYGLKLHIDGARIFNASVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSKSFIARAKILRKTLGGGMRQIGVLCAAAFTALQENLVKLEGDHRKAKILAAELNKIKGLKVDVATVETNIVYCDILKGSRISEAELVKTLEQYGLLILPEGPLRVRFVLHHQISESDVHYAVSCIQRALAGVAEENGDK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22609" stop="22403"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFRHDLFLLETVPNVYMGERPVSFSNFSQIFKLLISCPFNDQKTLFVLHMFVVGLVCPNDLVRNECWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28243" e_stop="28219"/>
            <exon e_start="27614" e_stop="27553"/>
            <exon e_start="26366" e_stop="25914"/>
            <exon e_start="25476" e_stop="25365"/>
            <exon e_start="24847" e_stop="24797"/>
            <exon e_start="24579" e_stop="24508"/>
            <exon e_start="24435" e_stop="24303"/>
            <exon e_start="24227" e_stop="24169"/>
            <exon e_start="23519" e_stop="23419"/>
            <exon e_start="22812" e_stop="22746"/>
            <exon e_start="22659" e_stop="22403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.892" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.532" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28243" e_stop="28219" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.892" acc_prob="0.990">
            <gDNA_intron_boundary i_start="28218" i_stop="27615" i_length="604"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27614" e_stop="27553" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26366" e_stop="25914" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.578">
            <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25365" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24847" e_stop="24797" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.532">
            <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24579" e_stop="24508" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24435" e_stop="24303" e_length="133"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24227" e_stop="24169" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23419" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22812" e_stop="22746" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.917">
            <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="22659" e_stop="22403" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28243" stop="28219"/>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28239" stop="28219"/>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25999" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24511" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24434" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24322" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAGCTAATTCATAAAATTTAAG : TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA : TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA : CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT : GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG : GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG : GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG : CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT : GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG : AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG : CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</gDNA_template>
            <first_frame> E  Q  L  I  H  K  I  *   : V  E  *  I  V  S  L  A  L  L  E  L  K  N  Q  R  R  E  A  Y  K  :  F  S  E  D  G  G  K  N  C  G  S  S  L  R  H  R  H  *  T  N  *  S  H  A  E  R  N  G  E  C  *  S  G  *  *  C  L  R  L  *  S  N  S  P  T  P  *  S  R  D  G  K  D  N  G  Q  G  S  R  I  I  C  S  F  W  H  Y  G  *  P  Y  Q  C  A  D  S  L  P  N  Q  G  Q  *  D  Y  S  R  *  L  F  P  Y  P  Y  L  *  K  W  R  H  F  H  P  W  R  C  S  S  K  D  S  E  E  Q  *  R  W  Y  D  G  S  *  S  D  *  S  C  D  S  R  S  *  L  *  N  M  L  P  N  H  *  A  D  L  L  G  E  F  A  S  S  :  L  R  G  Q  M  P  F  C  G  V  H  R  Q  S  W  R  A  S  K  E  V  W  S  E  A  P  H  *  W  S  S  Y  I  Q  C  I  S   : C  T  W  S  A  C  S  *  A  C  T  G  S  *  F  S  F   : G  M  L  I  K  R  S  W  C  S  S  W  I  C  D  C  W  F  E  E  L  H  C  Q   : G  Q  N  P  E  E  D  S  R  R  W  N  E  A  N  W  S  P  L  R  C  C  F  Y  R  F  T  R  E  S  C  *  A  G  R  R  S  Q  K  G  *  D  F  G  C :   G  T  *  Q  N  Q  R  A  *  S  *  C  C  H  C  R  D  Q  H   : C  I  L  R  H  T  E  G  V  K  D  Q  *  S  R  V  G  Q  D  F  G  T  I  W  F  T  Y  T  T  R  R  P  T  E  :  S  Q  I  C  S  T  P  P  D  F  R  K  *  C  T  L  C  S  V  L  H  S   : A  S  F  S  R  S  G  *  R  K  W  *  Q  V  T  G  *  I  G  F  R  H  D  L  F  L  L  E  T  V  P  N  V  Y  M  G  E  R  P  V  S  F  S  N  F  S  Q  I  F  K  L  L  I  S  C  P  F  N  D  Q  K  T  L  F  V  L  H  M  F  V  V  G  L  V  C  P  N  D  L  V  R  N  E  C  W  L </first_frame>
            <second_frame>  N  S  *  F  I  K  F  K  :  L  S  E  L  S  L  *  H  C  L  N  *  R  I  R  E  E  K  L  I  N :   S  V  K  M  V  V  R  T  V  D  L  R  S  D  T  V  T  R  P  T  E  A  M  R  N  A  M  A  N  A  E  V  D  D  D  V  L  G  Y  D  P  T  A  Q  R  L  E  A  E  M  A  R  I  T  G  K  E  A  G  L  F  V  P  S  G  T  M  G  N  L  I  S  V  L  T  H  C  Q  I  R  G  S  E  I  I  L  G  D  Y  S  H  I  H  I  Y  E  N  G  G  I  S  T  L  G  G  V  H  P  R  T  V  K  N  N  E  D  G  T  M  D  L  D  L  I  E  A  A  I  R  D  P  S  F  E  I  C  Y  P  T  T  R  L  I  C  L  E  N  S  Q  A  H :   S  G  G  R  C  L  S  A  E  Y  T  D  K  V  G  E  L  A  K  K  Y  G  L  K  L  H  I  D  G  A  R  I  F  N  A  S  V  :  A  L  G  V  P  V  H  R  L  V  Q  A  A  D  S  V  S  :  V  C  L  S  K  G  L  G  A  P  V  G  S  V  I  V  G  S  K  S  F  I  A  R  :  A  K  I  L  R  K  T  L  G  G  G  M  R  Q  I  G  V  L  C  A  A  A  F  T  A  L  Q  E  N  L  V  K  L  E  G  D  H  R  K  A  K  I  L  A   : A  E  L  N  K  I  K  G  L  K  V  D  V  A  T  V  E  T  N  I  :  V  Y  C  D  I  L  K  G  S  R  I  S  E  A  E  L  V  K  T  L  E  Q  Y  G  L  L  I  L  P  E  G  P  L  R :   V  R  F  V  L  H  H  Q  I  S  E  S  D  V  H  Y  A  V  S  C  I  Q  :  R  A  L  A  G  V  A  E  E  N  G  D  K  *  P  D  K  S  V  S  D  M  I  S  F  C  *  K  L  F  Q  M  F  T  W  E  R  D  Q  F  H  F  Q  I  L  V  K  S  L  N  F  S  F  H  V  L  L  M  I  K  R  L  C  L  F  F  I  C  L  L  L  D  *  F  V  L  M  I  *  *  E  M  N  V  G   </second_frame>
            <third_frame>   T  A  N  S  *  N  L  S :   *  V  N  C  L  S  S  I  A  *  I  E  E  S  E  K  R  S  L  *   : I  Q  *  R  W  W  *  E  L  W  I  F  A  Q  T  P  S  L  D  Q  L  K  P  C  G  T  Q  W  R  M  L  K  W  M  M  M  S  *  V  M  I  Q  Q  P  N  A  L  K  Q  R  W  Q  G  *  R  A  R  K  Q  D  Y  L  F  L  L  A  L  W  V  T  L  S  V  C  *  L  I  A  K  S  G  A  V  R  L  F  S  V  I  I  P  I  S  I  F  M  K  M  E  A  F  P  P  L  E  V  F  I  Q  G  Q  *  R  T  M  K  M  V  R  W  I  L  I  *  L  K  L  R  F  E  I  L  A  L  K  Y  V  T  Q  P  L  G  *  S  A  W  R  I  R  K  L   : T  Q  G  A  D  A  F  L  R  S  T  Q  T  K  L  E  S  *  Q  R  S  M  V  *  S  S  T  L  M  E  L  V  Y  S  M  H  Q  L :   H  L  E  C  L  F  I  G  L  Y  R  Q  L  I  Q  F  R :   Y  A  Y  Q  K  V  L  V  L  Q  L  D  L  *  L  L  V  R  R  A  S  L  P  G :   P  K  S  *  G  R  L  *  A  V  E  *  G  K  L  E  S  F  A  L  L  L  L  P  L  Y  K  R  I  L  L  S  W  K  E  I  T  E  R  L  R  F  W  L  :  R  N  L  T  K  S  K  G  L  K  L  M  L  P  L  *  R  P  T  L :   Y  I  A  T  Y  *  R  G  Q  G  S  V  K  Q  S  W  S  R  L  W  N  N  M  V  Y  L  Y  Y  Q  K  A  H  *   : E  S  D  L  F  Y  T  T  R  F  Q  K  V  M  Y  T  M  Q  C  L  A  F  S :   E  L  *  Q  E  W  L  K  K  M  V  T  S  N  R  I  N  R  F  Q  T  *  S  L  S  V  R  N  C  S  K  C  L  H  G  R  E  T  S  F  I  F  K  F  *  S  N  L  *  T  S  H  F  M  S  F  *  *  S  K  D  F  V  C  S  S  Y  V  C  C  W  T  S  L  S  *  *  F  S  K  K  *  M  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27578" stop="27553"/>
                    <exon start="26366" stop="25914"/>
                    <exon start="25476" stop="25365"/>
                    <exon start="24847" stop="24797"/>
                    <exon start="24579" stop="24508"/>
                    <exon start="24435" stop="24303"/>
                    <exon start="24227" stop="24169"/>
                    <exon start="23519" stop="23419"/>
                    <exon start="22812" stop="22746"/>
                    <exon start="22659" stop="22618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIREEKLINSVKMVVRTVDLRSDTVTRPTEAMRNAMANAEVDDDVLGYDPTAQRLEAEMARITGKEAGLFVPSGTMGNLISVLTHCQIRGSEIILGDYSHIHIYENGGISTLGGVHPRTVKNNEDGTMDLDLIEAAIRDPSFEICYPTTRLICLENSQAHSGGRCLSAEYTDKVGELAKKYGLKLHIDGARIFNASVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSKSFIARAKILRKTLGGGMRQIGVLCAAAFTALQENLVKLEGDHRKAKILAAELNKIKGLKVDVATVETNIVYCDILKGSRISEAELVKTLEQYGLLILPEGPLRVRFVLHHQISESDVHYAVSCIQRALAGVAEENGDK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22609" stop="22403"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFRHDLFLLETVPNVYMGERPVSFSNFSQIFKLLISCPFNDQKTLFVLHMFVVGLVCPNDLVRNECWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="27617" e_stop="27553"/>
            <exon e_start="26366" e_stop="25914"/>
            <exon e_start="25476" e_stop="25365"/>
            <exon e_start="24847" e_stop="24797"/>
            <exon e_start="24579" e_stop="24508"/>
            <exon e_start="24435" e_stop="24303"/>
            <exon e_start="24227" e_stop="24169"/>
            <exon e_start="23519" e_stop="23419"/>
            <exon e_start="22812" e_stop="22746"/>
            <exon e_start="22659" e_stop="22403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.532" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27617" e_stop="27553" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26366" e_stop="25914" e_length="453"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.578">
            <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25365" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24847" e_stop="24797" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.532">
            <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24579" e_stop="24508" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24435" e_stop="24303" e_length="133"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24227" e_stop="24169" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23419" e_length="101"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22812" e_stop="22746" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.917">
            <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22659" e_stop="22403" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27617" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25999" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24511" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24434" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24322" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA : TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA : CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT : GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG : GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG : GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG : CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT : GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG : AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG : CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</gDNA_template>
            <first_frame> Q  L  S  E  L  S  L  *  H  C  L  N  *  R  I  R  E  E  K  L  I  N :   S  V  K  M  V  V  R  T  V  D  L  R  S  D  T  V  T  R  P  T  E  A  M  R  N  A  M  A  N  A  E  V  D  D  D  V  L  G  Y  D  P  T  A  Q  R  L  E  A  E  M  A  R  I  T  G  K  E  A  G  L  F  V  P  S  G  T  M  G  N  L  I  S  V  L  T  H  C  Q  I  R  G  S  E  I  I  L  G  D  Y  S  H  I  H  I  Y  E  N  G  G  I  S  T  L  G  G  V  H  P  R  T  V  K  N  N  E  D  G  T  M  D  L  D  L  I  E  A  A  I  R  D  P  S  F  E  I  C  Y  P  T  T  R  L  I  C  L  E  N  S  Q  A  H :   S  G  G  R  C  L  S  A  E  Y  T  D  K  V  G  E  L  A  K  K  Y  G  L  K  L  H  I  D  G  A  R  I  F  N  A  S  V  :  A  L  G  V  P  V  H  R  L  V  Q  A  A  D  S  V  S  :  V  C  L  S  K  G  L  G  A  P  V  G  S  V  I  V  G  S  K  S  F  I  A  R  :  A  K  I  L  R  K  T  L  G  G  G  M  R  Q  I  G  V  L  C  A  A  A  F  T  A  L  Q  E  N  L  V  K  L  E  G  D  H  R  K  A  K  I  L  A   : A  E  L  N  K  I  K  G  L  K  V  D  V  A  T  V  E  T  N  I  :  V  Y  C  D  I  L  K  G  S  R  I  S  E  A  E  L  V  K  T  L  E  Q  Y  G  L  L  I  L  P  E  G  P  L  R :   V  R  F  V  L  H  H  Q  I  S  E  S  D  V  H  Y  A  V  S  C  I  Q  :  R  A  L  A  G  V  A  E  E  N  G  D  K  *  P  D  K  S  V  S  D  M  I  S  F  C  *  K  L  F  Q  M  F  T  W  E  R  D  Q  F  H  F  Q  I  L  V  K  S  L  N  F  S  F  H  V  L  L  M  I  K  R  L  C  L  F  F  I  C  L  L  L  D  *  F  V  L  M  I  *  *  E  M  N  V  G   </first_frame>
            <second_frame>  S  *  V  N  C  L  S  S  I  A  *  I  E  E  S  E  K  R  S  L  *   : I  Q  *  R  W  W  *  E  L  W  I  F  A  Q  T  P  S  L  D  Q  L  K  P  C  G  T  Q  W  R  M  L  K  W  M  M  M  S  *  V  M  I  Q  Q  P  N  A  L  K  Q  R  W  Q  G  *  R  A  R  K  Q  D  Y  L  F  L  L  A  L  W  V  T  L  S  V  C  *  L  I  A  K  S  G  A  V  R  L  F  S  V  I  I  P  I  S  I  F  M  K  M  E  A  F  P  P  L  E  V  F  I  Q  G  Q  *  R  T  M  K  M  V  R  W  I  L  I  *  L  K  L  R  F  E  I  L  A  L  K  Y  V  T  Q  P  L  G  *  S  A  W  R  I  R  K  L   : T  Q  G  A  D  A  F  L  R  S  T  Q  T  K  L  E  S  *  Q  R  S  M  V  *  S  S  T  L  M  E  L  V  Y  S  M  H  Q  L :   H  L  E  C  L  F  I  G  L  Y  R  Q  L  I  Q  F  R :   Y  A  Y  Q  K  V  L  V  L  Q  L  D  L  *  L  L  V  R  R  A  S  L  P  G :   P  K  S  *  G  R  L  *  A  V  E  *  G  K  L  E  S  F  A  L  L  L  L  P  L  Y  K  R  I  L  L  S  W  K  E  I  T  E  R  L  R  F  W  L  :  R  N  L  T  K  S  K  G  L  K  L  M  L  P  L  *  R  P  T  L :   Y  I  A  T  Y  *  R  G  Q  G  S  V  K  Q  S  W  S  R  L  W  N  N  M  V  Y  L  Y  Y  Q  K  A  H  *   : E  S  D  L  F  Y  T  T  R  F  Q  K  V  M  Y  T  M  Q  C  L  A  F  S :   E  L  *  Q  E  W  L  K  K  M  V  T  S  N  R  I  N  R  F  Q  T  *  S  L  S  V  R  N  C  S  K  C  L  H  G  R  E  T  S  F  I  F  K  F  *  S  N  L  *  T  S  H  F  M  S  F  *  *  S  K  D  F  V  C  S  S  Y  V  C  C  W  T  S  L  S  *  *  F  S  K  K  *  M  L  A  </second_frame>
            <third_frame>   V  E  *  I  V  S  L  A  L  L  E  L  K  N  Q  R  R  E  A  Y  K  :  F  S  E  D  G  G  K  N  C  G  S  S  L  R  H  R  H  *  T  N  *  S  H  A  E  R  N  G  E  C  *  S  G  *  *  C  L  R  L  *  S  N  S  P  T  P  *  S  R  D  G  K  D  N  G  Q  G  S  R  I  I  C  S  F  W  H  Y  G  *  P  Y  Q  C  A  D  S  L  P  N  Q  G  Q  *  D  Y  S  R  *  L  F  P  Y  P  Y  L  *  K  W  R  H  F  H  P  W  R  C  S  S  K  D  S  E  E  Q  *  R  W  Y  D  G  S  *  S  D  *  S  C  D  S  R  S  *  L  *  N  M  L  P  N  H  *  A  D  L  L  G  E  F  A  S  S  :  L  R  G  Q  M  P  F  C  G  V  H  R  Q  S  W  R  A  S  K  E  V  W  S  E  A  P  H  *  W  S  S  Y  I  Q  C  I  S   : C  T  W  S  A  C  S  *  A  C  T  G  S  *  F  S  F   : G  M  L  I  K  R  S  W  C  S  S  W  I  C  D  C  W  F  E  E  L  H  C  Q   : G  Q  N  P  E  E  D  S  R  R  W  N  E  A  N  W  S  P  L  R  C  C  F  Y  R  F  T  R  E  S  C  *  A  G  R  R  S  Q  K  G  *  D  F  G  C :   G  T  *  Q  N  Q  R  A  *  S  *  C  C  H  C  R  D  Q  H   : C  I  L  R  H  T  E  G  V  K  D  Q  *  S  R  V  G  Q  D  F  G  T  I  W  F  T  Y  T  T  R  R  P  T  E  :  S  Q  I  C  S  T  P  P  D  F  R  K  *  C  T  L  C  S  V  L  H  S   : A  S  F  S  R  S  G  *  R  K  W  *  Q  V  T  G  *  I  G  F  R  H  D  L  F  L  L  E  T  V  P  N  V  Y  M  G  E  R  P  V  S  F  S  N  F  S  Q  I  F  K  L  L  I  S  C  P  F  N  D  Q  K  T  L  F  V  L  H  M  F  V  V  G  L  V  C  P  N  D  L  V  R  N  E  C  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27578" stop="27553"/>
                    <exon start="26366" stop="25914"/>
                    <exon start="25476" stop="25365"/>
                    <exon start="24847" stop="24797"/>
                    <exon start="24579" stop="24508"/>
                    <exon start="24435" stop="24303"/>
                    <exon start="24227" stop="24169"/>
                    <exon start="23519" stop="23419"/>
                    <exon start="22812" stop="22746"/>
                    <exon start="22659" stop="22618"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIREEKLINSVKMVVRTVDLRSDTVTRPTEAMRNAMANAEVDDDVLGYDPTAQRLEAEMARITGKEAGLFVPSGTMGNLISVLTHCQIRGSEIILGDYSHIHIYENGGISTLGGVHPRTVKNNEDGTMDLDLIEAAIRDPSFEICYPTTRLICLENSQAHSGGRCLSAEYTDKVGELAKKYGLKLHIDGARIFNASVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSKSFIARAKILRKTLGGGMRQIGVLCAAAFTALQENLVKLEGDHRKAKILAAELNKIKGLKVDVATVETNIVYCDILKGSRISEAELVKTLEQYGLLILPEGPLRVRFVLHHQISESDVHYAVSCIQRALAGVAEENGDK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22609" stop="22403"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFRHDLFLLETVPNVYMGERPVSFSNFSQIFKLLISCPFNDQKTLFVLHMFVVGLVCPNDLVRNECWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28137" e_stop="28052"/>
            <exon e_start="27614" e_stop="27553"/>
            <exon e_start="26366" e_stop="25914"/>
            <exon e_start="25476" e_stop="25365"/>
            <exon e_start="24847" e_stop="24797"/>
            <exon e_start="24579" e_stop="24508"/>
            <exon e_start="24435" e_stop="24303"/>
            <exon e_start="24227" e_stop="24169"/>
            <exon e_start="23519" e_stop="23419"/>
            <exon e_start="22812" e_stop="22746"/>
            <exon e_start="22659" e_stop="22403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.532" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28137" e_stop="28052" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="28051" i_stop="27615" i_length="437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27614" e_stop="27553" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26366" e_stop="25914" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.578">
            <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25365" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24847" e_stop="24797" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.532">
            <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24579" e_stop="24508" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24435" e_stop="24303" e_length="133"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24227" e_stop="24169" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23419" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22812" e_stop="22746" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.917">
            <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="22659" e_stop="22403" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28137" stop="28052"/>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25999" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24511" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24434" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24323" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24322" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAG : TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA : TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA : CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT : GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG : GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG : GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG : CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT : GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG : AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG : CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</gDNA_template>
            <first_frame> L  *  *  N  P  K  N  *  N  K  F  A  C  M  *  L  N  V  L  I  C  C  L  I  L  R  P  N  S :   *  V  N  C  L  S  S  I  A  *  I  E  E  S  E  K  R  S  L  *   : I  Q  *  R  W  W  *  E  L  W  I  F  A  Q  T  P  S  L  D  Q  L  K  P  C  G  T  Q  W  R  M  L  K  W  M  M  M  S  *  V  M  I  Q  Q  P  N  A  L  K  Q  R  W  Q  G  *  R  A  R  K  Q  D  Y  L  F  L  L  A  L  W  V  T  L  S  V  C  *  L  I  A  K  S  G  A  V  R  L  F  S  V  I  I  P  I  S  I  F  M  K  M  E  A  F  P  P  L  E  V  F  I  Q  G  Q  *  R  T  M  K  M  V  R  W  I  L  I  *  L  K  L  R  F  E  I  L  A  L  K  Y  V  T  Q  P  L  G  *  S  A  W  R  I  R  K  L   : T  Q  G  A  D  A  F  L  R  S  T  Q  T  K  L  E  S  *  Q  R  S  M  V  *  S  S  T  L  M  E  L  V  Y  S  M  H  Q  L :   H  L  E  C  L  F  I  G  L  Y  R  Q  L  I  Q  F  R :   Y  A  Y  Q  K  V  L  V  L  Q  L  D  L  *  L  L  V  R  R  A  S  L  P  G :   P  K  S  *  G  R  L  *  A  V  E  *  G  K  L  E  S  F  A  L  L  L  L  P  L  Y  K  R  I  L  L  S  W  K  E  I  T  E  R  L  R  F  W  L  :  R  N  L  T  K  S  K  G  L  K  L  M  L  P  L  *  R  P  T  L :   Y  I  A  T  Y  *  R  G  Q  G  S  V  K  Q  S  W  S  R  L  W  N  N  M  V  Y  L  Y  Y  Q  K  A  H  *   : E  S  D  L  F  Y  T  T  R  F  Q  K  V  M  Y  T  M  Q  C  L  A  F  S :   E  L  *  Q  E  W  L  K  K  M  V  T  S  N  R  I  N  R  F  Q  T  *  S  L  S  V  R  N  C  S  K  C  L  H  G  R  E  T  S  F  I  F  K  F  *  S  N  L  *  T  S  H  F  M  S  F  *  *  S  K  D  F  V  C  S  S  Y  V  C  C  W  T  S  L  S  *  *  F  S  K  K  *  M  L  A  </first_frame>
            <second_frame>  F  D  K  I  Q  K  I  K  I  N  L  H  A  C  N  *  M  C  L  F  A  V  S  Y  S  D  L  T   : V  E  *  I  V  S  L  A  L  L  E  L  K  N  Q  R  R  E  A  Y  K  :  F  S  E  D  G  G  K  N  C  G  S  S  L  R  H  R  H  *  T  N  *  S  H  A  E  R  N  G  E  C  *  S  G  *  *  C  L  R  L  *  S  N  S  P  T  P  *  S  R  D  G  K  D  N  G  Q  G  S  R  I  I  C  S  F  W  H  Y  G  *  P  Y  Q  C  A  D  S  L  P  N  Q  G  Q  *  D  Y  S  R  *  L  F  P  Y  P  Y  L  *  K  W  R  H  F  H  P  W  R  C  S  S  K  D  S  E  E  Q  *  R  W  Y  D  G  S  *  S  D  *  S  C  D  S  R  S  *  L  *  N  M  L  P  N  H  *  A  D  L  L  G  E  F  A  S  S  :  L  R  G  Q  M  P  F  C  G  V  H  R  Q  S  W  R  A  S  K  E  V  W  S  E  A  P  H  *  W  S  S  Y  I  Q  C  I  S   : C  T  W  S  A  C  S  *  A  C  T  G  S  *  F  S  F   : G  M  L  I  K  R  S  W  C  S  S  W  I  C  D  C  W  F  E  E  L  H  C  Q   : G  Q  N  P  E  E  D  S  R  R  W  N  E  A  N  W  S  P  L  R  C  C  F  Y  R  F  T  R  E  S  C  *  A  G  R  R  S  Q  K  G  *  D  F  G  C :   G  T  *  Q  N  Q  R  A  *  S  *  C  C  H  C  R  D  Q  H   : C  I  L  R  H  T  E  G  V  K  D  Q  *  S  R  V  G  Q  D  F  G  T  I  W  F  T  Y  T  T  R  R  P  T  E  :  S  Q  I  C  S  T  P  P  D  F  R  K  *  C  T  L  C  S  V  L  H  S   : A  S  F  S  R  S  G  *  R  K  W  *  Q  V  T  G  *  I  G  F  R  H  D  L  F  L  L  E  T  V  P  N  V  Y  M  G  E  R  P  V  S  F  S  N  F  S  Q  I  F  K  L  L  I  S  C  P  F  N  D  Q  K  T  L  F  V  L  H  M  F  V  V  G  L  V  C  P  N  D  L  V  R  N  E  C  W  L </second_frame>
            <third_frame>   L  I  K  S  K  K  L  K  *  I  C  M  H  V  I  K  C  A  Y  L  L  S  H  T  Q  T  *  Q  :  L  S  E  L  S  L  *  H  C  L  N  *  R  I  R  E  E  K  L  I  N :   S  V  K  M  V  V  R  T  V  D  L  R  S  D  T  V  T  R  P  T  E  A  M  R  N  A  M  A  N  A  E  V  D  D  D  V  L  G  Y  D  P  T  A  Q  R  L  E  A  E  M  A  R  I  T  G  K  E  A  G  L  F  V  P  S  G  T  M  G  N  L  I  S  V  L  T  H  C  Q  I  R  G  S  E  I  I  L  G  D  Y  S  H  I  H  I  Y  E  N  G  G  I  S  T  L  G  G  V  H  P  R  T  V  K  N  N  E  D  G  T  M  D  L  D  L  I  E  A  A  I  R  D  P  S  F  E  I  C  Y  P  T  T  R  L  I  C  L  E  N  S  Q  A  H :   S  G  G  R  C  L  S  A  E  Y  T  D  K  V  G  E  L  A  K  K  Y  G  L  K  L  H  I  D  G  A  R  I  F  N  A  S  V  :  A  L  G  V  P  V  H  R  L  V  Q  A  A  D  S  V  S  :  V  C  L  S  K  G  L  G  A  P  V  G  S  V  I  V  G  S  K  S  F  I  A  R  :  A  K  I  L  R  K  T  L  G  G  G  M  R  Q  I  G  V  L  C  A  A  A  F  T  A  L  Q  E  N  L  V  K  L  E  G  D  H  R  K  A  K  I  L  A   : A  E  L  N  K  I  K  G  L  K  V  D  V  A  T  V  E  T  N  I  :  V  Y  C  D  I  L  K  G  S  R  I  S  E  A  E  L  V  K  T  L  E  Q  Y  G  L  L  I  L  P  E  G  P  L  R :   V  R  F  V  L  H  H  Q  I  S  E  S  D  V  H  Y  A  V  S  C  I  Q  :  R  A  L  A  G  V  A  E  E  N  G  D  K  *  P  D  K  S  V  S  D  M  I  S  F  C  *  K  L  F  Q  M  F  T  W  E  R  D  Q  F  H  F  Q  I  L  V  K  S  L  N  F  S  F  H  V  L  L  M  I  K  R  L  C  L  F  F  I  C  L  L  L  D  *  F  V  L  M  I  *  *  E  M  N  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27578" stop="27553"/>
                    <exon start="26366" stop="25914"/>
                    <exon start="25476" stop="25365"/>
                    <exon start="24847" stop="24797"/>
                    <exon start="24579" stop="24508"/>
                    <exon start="24435" stop="24303"/>
                    <exon start="24227" stop="24169"/>
                    <exon start="23519" stop="23419"/>
                    <exon start="22812" stop="22746"/>
                    <exon start="22659" stop="22618"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIREEKLINSVKMVVRTVDLRSDTVTRPTEAMRNAMANAEVDDDVLGYDPTAQRLEAEMARITGKEAGLFVPSGTMGNLISVLTHCQIRGSEIILGDYSHIHIYENGGISTLGGVHPRTVKNNEDGTMDLDLIEAAIRDPSFEICYPTTRLICLENSQAHSGGRCLSAEYTDKVGELAKKYGLKLHIDGARIFNASVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSKSFIARAKILRKTLGGGMRQIGVLCAAAFTALQENLVKLEGDHRKAKILAAELNKIKGLKVDVATVETNIVYCDILKGSRISEAELVKTLEQYGLLILPEGPLRVRFVLHHQISESDVHYAVSCIQRALAGVAEENGDK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22609" stop="22403"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFRHDLFLLETVPNVYMGERPVSFSNFSQIFKLLISCPFNDQKTLFVLHMFVVGLVCPNDLVRNECWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="22817" e_stop="22746"/>
            <exon e_start="22659" e_stop="22438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.917" e_score="0.972"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="22817" e_stop="22746" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.917">
            <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="22659" e_stop="22438" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22817" stop="22746"/>
              <exon start="22659" stop="22438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG : CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTT</gDNA_template>
            <first_frame> C  R  V  R  F  V  L  H  H  Q  I  S  E  S  D  V  H  Y  A  V  S  C  I  Q  :  R  A  L  A  G  V  A  E  E  N  G  D  K  *  P  D  K  S  V  S  D  M  I  S  F  C  *  K  L  F  Q  M  F  T  W  E  R  D  Q  F  H  F  Q  I  L  V  K  S  L  N  F  S  F  H  V  L  L  M  I  K  R  L  C  L  F  F  I  C  L  L  L  D  *  F </first_frame>
            <second_frame>  A  E  S  D  L  F  Y  T  T  R  F  Q  K  V  M  Y  T  M  Q  C  L  A  F  S :   E  L  *  Q  E  W  L  K  K  M  V  T  S  N  R  I  N  R  F  Q  T  *  S  L  S  V  R  N  C  S  K  C  L  H  G  R  E  T  S  F  I  F  K  F  *  S  N  L  *  T  S  H  F  M  S  F  *  *  S  K  D  F  V  C  S  S  Y  V  C  C  W  T  S   </second_frame>
            <third_frame>   Q  S  Q  I  C  S  T  P  P  D  F  R  K  *  C  T  L  C  S  V  L  H  S   : A  S  F  S  R  S  G  *  R  K  W  *  Q  V  T  G  *  I  G  F  R  H  D  L  F  L  L  E  T  V  P  N  V  Y  M  G  E  R  P  V  S  F  S  N  F  S  Q  I  F  K  L  L  I  S  C  P  F  N  D  Q  K  T  L  F  V  L  H  M  F  V  V  G  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33105" PGL_stop="32754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33105" e_stop="32754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="33105" e_stop="32754" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33105" stop="32754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGGTAAATTCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAGTCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTAAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  G  K  F  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  E  Y  V  K  S  C  D  S  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  P  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  T  V  N  S  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  S  M  S  N  L  V  I  V  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  K  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  V  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  S  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="45169" PGL_stop="39840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45169" e_stop="44769"/>
            <exon e_start="43821" e_stop="42127"/>
            <exon e_start="41378" e_stop="41097"/>
            <exon e_start="40842" e_stop="39840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="0.991" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45169" e_stop="44769" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44768" i_stop="43822" i_length="947"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="43821" e_stop="42127" e_length="1695"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42126" i_stop="41379" i_length="748"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41378" e_stop="41097" e_length="282"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.911">
            <gDNA_intron_boundary i_start="41096" i_stop="40843" i_length="254"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="40842" e_stop="39840" e_length="1003"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45169" stop="44769"/>
              <exon start="43821" stop="43514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45162" stop="44769"/>
              <exon start="43821" stop="43564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45162" stop="44769"/>
              <exon start="43821" stop="43566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45156" stop="44769"/>
              <exon start="43821" stop="43357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45132" stop="44769"/>
              <exon start="43821" stop="42194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43495" stop="43260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43480" stop="42710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43416" stop="42941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43415" stop="42729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43414" stop="42908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43008" stop="42522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43008" stop="42581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42626" stop="42127"/>
              <exon start="41378" stop="41349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42502" stop="42127"/>
              <exon start="41378" stop="41099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42454" stop="42127"/>
              <exon start="41378" stop="41097"/>
              <exon start="40842" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42454" stop="42127"/>
              <exon start="41378" stop="41099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41378" stop="41097"/>
              <exon start="40842" stop="40327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41352" stop="41097"/>
              <exon start="40842" stop="40409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41235" stop="41097"/>
              <exon start="40842" stop="40278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40592" stop="39840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTAATGGAATCTCATCAGCTTCGGAGCTAAAAACCGATTCCGAAATATCTTCTCGTCGGAGCGGAAAAACGCCGCCGCGGCCTGAATCTACTCTACCGGAGACCGTCATTTCTCGCCGGCGTATAGATTTCAGCTCATTTACAGGCAAAATCTGAGGTATACTTATCCAAAACCCTAGATTTCTCGGAGTCTCCCTTGGGAGACTGAAATAGTTAGCAAACATGAGGATTATGATAAAGGGAGGAGTATGGAAGAACACGGAGGATGAGATTCTAAAGGCGGCGGTGATGAAGTATGGGAAGAATCAGTGGGCTCGTATTTCTTCTTTACTTGTTCGTAAATCTGCTAAGCAGTGTAAAGCTCGCTGGTATGAATGGCTCGATCCTTCAATTAAGAAG : ACTGAATGGACTAGAGAGGAGGATGAAAAACTACTTCACCTTGCAAAACTCATGCCTACCCAATGGAGGACAATTGCGCCAATCGTTGGCCGTACACCATCACAATGCCTTGAACGTTATGAGAAGCTTCTCGATGCAGCATGTACTAAGGATGAGAACTATGATCCTAATGATGATCCAAGAAAATTGAAGCCCGGAGAGATTGATCCTAACCCGGAATCAAAGCCTGCTCGTCCTGATCCTGTTGATATGGATGAGGACGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCCAACACAAGAGGCAAGAAGGCTAAAAGGAAAGCCAGAGAAAAGCAGCTTGAAGAGGCGCGGAGGCTTGCTTCTTTACAGAAGAGGAGAGAACTGAAGGCTGCTGGAATAGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCATTATGATGGAAGCAGAAAATCAACGAAGATTGACTCAATCTCAAACACCATTACTTGGAGGAGATAATCCTTTGTTGCACCCCTCAGATTTCTCGGGTGTCACTCCTAAGAAAAGGGAGGTTCAAACTCCAAACCCACTTTTAACTCCTTCAGCGACTCCTGGAGCCACGAGCCTTACTCCTAGAATTGGCATGACACCTTCGAGAGATTCTTATGGGATGACACCCAAAGGAACTCCTATGAGGGACGAGCTACGCATTAATGAAGAAATGGATATGCATAGTAATGCTAAACTGGGGCAATTTAATTCAAAAAAAGAATTGCTTTCTGGTTTGAAAAGCCTTCCTCAGCCCAAGAATGAGTACCAGATTGTCATCCAACAACCTCCTGAAGAAAATGAAGAACCAGAAGAGAAGATCGAAGAAGACATGTCTGATAGGATTGCCAGGGAGAAGGCTGAAGAAGAAGCAAAGCGACAAGCATTACTCCGTAAAAGGTCAAAAGTATTGCAAAGGGAGCTCCCTAGACCTCCCATTGCTTCTCTAGAACTAATAAAGAGTTCCTTGATGAGAGCTGATGAGGACAAGAGCTCCTTTGTTCCTCCTACACTAATTGAGCAGGCTGATGAAATGATTAGAAAGGAACTTGTGTCCTTGCTAGAACATGATAATACCAAGTACCCTCTAGATGAGAAGCCAGAGAAGGAGAAGAAAAAGGGGGTCAAGCGAAAAATTGTTGCTGAACCTGCTATTGAGGATTTTGAGGAAGATGAATTAAAAGAG : GCCGATGGATTGATCAAGGATGAGGCTCACTTTCTTCGTGTGGCAATGGGACATGAGAGTGAATCTCTTGATGAATTTGTCGAAATACACAAAGCAACTTTGAATGATATCATGTACTTTCCTACCCGAAATGCTTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTTGCTGCTTTGCAGAACGAGTTTGAGAATGTGAAGAAAAAAATGGACGATGATACTAAGAAAGCAACAAAACTTGAGCAAAAGATCAAAGTTCTTACTAATGGATATCAG : ATGCGAGCTGGAAAGCTTTGGTCACAGATAGAGTCAACCTTCAAGAAAATGGACACAGCGGGTACAGAGCTTGAATGCTTCCGAGCATTACAAAAACAAGAGCAGCTAGCAGCATCCCACAGGATCAACAATATGTGGGAAGAAGTTCAGAAGCAAAAGGAGCTTGAGCGTACTTTACAGAAAAGGTACGGTGACCTCATAGCAGATACGCAAAAGATCCAGCATCTCATGGATGAGTATAGAATACAAGATCAAATGCAGGAAGAAGTTGCAGCAAAAAATCGTGCTCTTGAGTTGGCGAAGGCAGAAATGGCAGAAAAAGATAGTGTACCATCTGCTGATGATGTGGAACCTTCAGGTACCGGACAGAATTCCAATACAGAGGAAAATTCTGCTTCTGCCTCTCATGTGCCAATAGAAGCTGATGTGCATGTAGAGCCTTCAGGTACCAACCAGTGCTCTAATGCAGAGGAAAATTCTGCTTCTATTGAAGCTGATAATGTGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCTCTCATGACACAACTCCTCGAGACGTTGATGGACAGGTGCAAGTGGCTGACGTTTCCACAATGGACTCTGAAGCCATAAGTGACCATGTACCTATGGAGGGTCAGCAAAACCCAGGAGAAGAGAGTAACACAGTTGTTACTAAAACAGAAGACTCTACAGTAGCAGCAGGTGACGTGGATGTTACTAAAACAGACGACTCTGGAGTAGTAGCAGGTGATGGTGAGGCTGATCCCAAAAACATGTAAGGTTCTACCGAGAAAGTGGTTGGTTGTTCAATAGTTCCTTAATCCTGTTTTCCTACATTTTTGGAACCAAGTTTTGCTTCATTTCAAGAATATGTTGTTTGGTTGGATGAAAATTCGAAATTCTCAAAATTTGTACTGTGGTTTAGCTACCTATGCTGGTATTTGCAAAATAATCAAAAACTGCATTTGCCTA</gDNA_template>
            <first_frame> T  L  M  E  S  H  Q  L  R  S  *  K  P  I  P  K  Y  L  L  V  G  A  E  K  R  R  R  G  L  N  L  L  Y  R  R  P  S  F  L  A  G  V  *  I  S  A  H  L  Q  A  K  S  E  V  Y  L  S  K  T  L  D  F  S  E  S  P  L  G  D  *  N  S  *  Q  T  *  G  L  *  *  R  E  E  Y  G  R  T  R  R  M  R  F  *  R  R  R  *  *  S  M  G  R  I  S  G  L  V  F  L  L  Y  L  F  V  N  L  L  S  S  V  K  L  A  G  M  N  G  S  I  L  Q  L  R  R :   L  N  G  L  E  R  R  M  K  N  Y  F  T  L  Q  N  S  C  L  P  N  G  G  Q  L  R  Q  S  L  A  V  H  H  H  N  A  L  N  V  M  R  S  F  S  M  Q  H  V  L  R  M  R  T  M  I  L  M  M  I  Q  E  N  *  S  P  E  R  L  I  L  T  R  N  Q  S  L  L  V  L  I  L  L  I  W  M  R  T  R  K  K  C  F  L  K  H  G  L  G  W  P  T  Q  E  A  R  R  L  K  G  K  P  E  K  S  S  L  K  R  R  G  G  L  L  L  Y  R  R  G  E  N  *  R  L  L  E  *  M  S  V  K  G  R  E  K  G  E  V  L  I  T  M  L  K  F  P  L  K  R  S  L  L  Q  V  S  M  M  S  L  R  K  T  V  Q  L  I  N  L  S  F  Q  L  P  L  R  N  *  K  V  K  G  E  S  I  R  K  L  A  *  G  S  R  I  L  R  G  T  K  L  Q  R  D  R  M  P  L  H  P  Y  C  M  R  T  N  L  M  I  Q  K  Q  *  G  R  G  R  N  *  I  F  Q  H  H  R  F  Q  I  M  N  W  R  P  *  Q  R  *  V  L  P  V  I  *  L  G  E  M  N  C  P  K  G  M  L  Q  R  V  L  F  L  Q  I  M  P  R  H  H  N  M  L  *  L  L  C  E  H  L  K  E  P  L  Q  L  S  K  T  P  L  *  W  K  Q  K  I  N  E  D  *  L  N  L  K  H  H  Y  L  E  E  I  I  L  C  C  T  P  Q  I  S  R  V  S  L  L  R  K  G  R  F  K  L  Q  T  H  F  *  L  L  Q  R  L  L  E  P  R  A  L  L  L  E  L  A  *  H  L  R  E  I  L  M  G  *  H  P  K  E  L  L  *  G  T  S  Y  A  L  M  K  K  W  I  C  I  V  M  L  N  W  G  N  L  I  Q  K  K  N  C  F  L  V  *  K  A  F  L  S  P  R  M  S  T  R  L  S  S  N  N  L  L  K  K  M  K  N  Q  K  R  R  S  K  K  T  C  L  I  G  L  P  G  R  R  L  K  K  K  Q  S  D  K  H  Y  S  V  K  G  Q  K  Y  C  K  G  S  S  L  D  L  P  L  L  L  *  N  *  *  R  V  P  *  *  E  L  M  R  T  R  A  P  L  F  L  L  H  *  L  S  R  L  M  K  *  L  E  R  N  L  C  P  C  *  N  M  I  I  P  S  T  L  *  M  R  S  Q  R  R  R  R  K  R  G  S  S  E  K  L  L  L  N  L  L  L  R  I  L  R  K  M  N  *  K  R :   P  M  D  *  S  R  M  R  L  T  F  F  V  W  Q  W  D  M  R  V  N  L  L  M  N  L  S  K  Y  T  K  Q  L  *  M  I  S  C  T  F  L  P  E  M  L  M  V  S  Q  V  L  L  E  T  W  K  S  L  L  L  C  R  T  S  L  R  M  *  R  K  K  W  T  M  I  L  R  K  Q  Q  N  L  S  K  R  S  K  F  L  L  M  D  I  R :   C  E  L  E  S  F  G  H  R  *  S  Q  P  S  R  K  W  T  Q  R  V  Q  S  L  N  A  S  E  H  Y  K  N  K  S  S  *  Q  H  P  T  G  S  T  I  C  G  K  K  F  R  S  K  R  S  L  S  V  L  Y  R  K  G  T  V  T  S  *  Q  I  R  K  R  S  S  I  S  W  M  S  I  E  Y  K  I  K  C  R  K  K  L  Q  Q  K  I  V  L  L  S  W  R  R  Q  K  W  Q  K  K  I  V  Y  H  L  L  M  M  W  N  L  Q  V  P  D  R  I  P  I  Q  R  K  I  L  L  L  P  L  M  C  Q  *  K  L  M  C  M  *  S  L  Q  V  P  T  S  A  L  M  Q  R  K  I  L  L  L  L  K  L  I  M  C  M  W  S  P  Q  V  L  A  S  A  P  L  Q  R  K  L  L  P  P  S  L  M  T  Q  L  L  E  T  L  M  D  R  C  K  W  L  T  F  P  Q  W  T  L  K  P  *  V  T  M  Y  L  W  R  V  S  K  T  Q  E  K  R  V  T  Q  L  L  L  K  Q  K  T  L  Q  *  Q  Q  V  T  W  M  L  L  K  Q  T  T  L  E  *  *  Q  V  M  V  R  L  I  P  K  T  C  K  V  L  P  R  K  W  L  V  V  Q  *  F  L  N  P  V  F  L  H  F  W  N  Q  V  L  L  H  F  K  N  M  L  F  G  W  M  K  I  R  N  S  Q  N  L  Y  C  G  L  A  T  Y  A  G  I  C  K  I  I  K  N  C  I  C  L </first_frame>
            <second_frame>  H  *  W  N  L  I  S  F  G  A  K  N  R  F  R  N  I  F  S  S  E  R  K  N  A  A  A  A  *  I  Y  S  T  G  D  R  H  F  S  P  A  Y  R  F  Q  L  I  Y  R  Q  N  L  R  Y  T  Y  P  K  P  *  I  S  R  S  L  P  W  E  T  E  I  V  S  K  H  E  D  Y  D  K  G  R  S  M  E  E  H  G  G  *  D  S  K  G  G  G  D  E  V  W  E  E  S  V  G  S  Y  F  F  F  T  C  S  *  I  C  *  A  V  *  S  S  L  V  *  M  A  R  S  F  N  *  E   : D  *  M  D  *  R  G  G  *  K  T  T  S  P  C  K  T  H  A  Y  P  M  E  D  N  C  A  N  R  W  P  Y  T  I  T  M  P  *  T  L  *  E  A  S  R  C  S  M  Y  *  G  *  E  L  *  S  *  *  *  S  K  K  I  E  A  R  R  D  *  S  *  P  G  I  K  A  C  S  S  *  S  C  *  Y  G  *  G  R  E  R  N  A  F  *  S  T  G  *  V  G  Q  H  K  R  Q  E  G  *  K  E  S  Q  R  K  A  A  *  R  G  A  E  A  C  F  F  T  E  E  E  R  T  E  G  C  W  N  R  C  P  S  K  E  E  K  K  E  R  Y  *  L  Q  C  *  N  S  L  *  K  E  A  S  S  R  F  L  *  C  H  *  G  R  P  S  S  *  S  T  *  V  S  N  Y  H  *  G  T  R  R  *  K  E  S  R  *  G  S  S  P  K  E  A  G  Y  C  E  E  Q  N  C  R  E  T  G  C  P  Y  I  H  I  A  C  E  Q  T  *  *  S  R  S  S  E  E  E  V  E  T  E  S  S  S  T  T  D  S  R  S  *  I  G  G  H  S  K  D  R  Y  C  Q  *  S  N  W  G  R  *  T  V  R  R  E  C  C  N  A  C  S  S  C  K  L  C  P  D  T  T  T  C  Y  D  S  Y  A  N  T  S  K  N  P  F  N  *  A  R  R  H  Y  D  G  S  R  K  S  T  K  I  D  S  I  S  N  T  I  T  W  R  R  *  S  F  V  A  P  L  R  F  L  G  C  H  S  *  E  K  G  G  S  N  S  K  P  T  F  N  S  F  S  D  S  W  S  H  E  P  Y  S  *  N  W  H  D  T  F  E  R  F  L  W  D  D  T  Q  R  N  S  Y  E  G  R  A  T  H  *  *  R  N  G  Y  A  *  *  C  *  T  G  A  I  *  F  K  K  R  I  A  F  W  F  E  K  P  S  S  A  Q  E  *  V  P  D  C  H  P  T  T  S  *  R  K  *  R  T  R  R  E  D  R  R  R  H  V  *  *  D  C  Q  G  E  G  *  R  R  S  K  A  T  S  I  T  P  *  K  V  K  S  I  A  K  G  A  P  *  T  S  H  C  F  S  R  T  N  K  E  F  L  D  E  S  *  *  G  Q  E  L  L  C  S  S  Y  T  N  *  A  G  *  *  N  D  *  K  G  T  C  V  L  A  R  T  *  *  Y  Q  V  P  S  R  *  E  A  R  E  G  E  E  K  G  G  Q  A  K  N  C  C  *  T  C  Y  *  G  F  *  G  R  *  I  K  R   : G  R  W  I  D  Q  G  *  G  S  L  S  S  C  G  N  G  T  *  E  *  I  S  *  *  I  C  R  N  T  Q  S  N  F  E  *  Y  H  V  L  S  Y  P  K  C  L  W  S  L  K  C  C  W  K  H  G  K  A  C  C  F  A  E  R  V  *  E  C  E  E  K  N  G  R  *  Y  *  E  S  N  K  T  *  A  K  D  Q  S  S  Y  *  W  I  S   : D  A  S  W  K  A  L  V  T  D  R  V  N  L  Q  E  N  G  H  S  G  Y  R  A  *  M  L  P  S  I  T  K  T  R  A  A  S  S  I  P  Q  D  Q  Q  Y  V  G  R  S  S  E  A  K  G  A  *  A  Y  F  T  E  K  V  R  *  P  H  S  R  Y  A  K  D  P  A  S  H  G  *  V  *  N  T  R  S  N  A  G  R  S  C  S  K  K  S  C  S  *  V  G  E  G  R  N  G  R  K  R  *  C  T  I  C  *  *  C  G  T  F  R  Y  R  T  E  F  Q  Y  R  G  K  F  C  F  C  L  S  C  A  N  R  S  *  C  A  C  R  A  F  R  Y  Q  P  V  L  *  C  R  G  K  F  C  F  Y  *  S  *  *  C  A  C  G  A  L  R  Y  *  P  V  P  H  C  R  G  N  F  C  L  H  L  S  *  H  N  S  S  R  R  *  W  T  G  A  S  G  *  R  F  H  N  G  L  *  S  H  K  *  P  C  T  Y  G  G  S  A  K  P  R  R  R  E  *  H  S  C  Y  *  N  R  R  L  Y  S  S  S  R  *  R  G  C  Y  *  N  R  R  L  W  S  S  S  R  *  W  *  G  *  S  Q  K  H  V  R  F  Y  R  E  S  G  W  L  F  N  S  S  L  I  L  F  S  Y  I  F  G  T  K  F  C  F  I  S  R  I  C  C  L  V  G  *  K  F  E  I  L  K  I  C  T  V  V  *  L  P  M  L  V  F  A  K  *  S  K  T  A  F  A   </second_frame>
            <third_frame>   T  N  G  I  S  S  A  S  E  L  K  T  D  S  E  I  S  S  R  R  S  G  K  T  P  P  R  P  E  S  T  L  P  E  T  V  I  S  R  R  R  I  D  F  S  S  F  T  G  K  I  *  G  I  L  I  Q  N  P  R  F  L  G  V  S  L  G  R  L  K  *  L  A  N  M  R  I  M  I  K  G  G  V  W  K  N  T  E  D  E  I  L  K  A  A  V  M  K  Y  G  K  N  Q  W  A  R  I  S  S  L  L  V  R  K  S  A  K  Q  C  K  A  R  W  Y  E  W  L  D  P  S  I  K  K  :  T  E  W  T  R  E  E  D  E  K  L  L  H  L  A  K  L  M  P  T  Q  W  R  T  I  A  P  I  V  G  R  T  P  S  Q  C  L  E  R  Y  E  K  L  L  D  A  A  C  T  K  D  E  N  Y  D  P  N  D  D  P  R  K  L  K  P  G  E  I  D  P  N  P  E  S  K  P  A  R  P  D  P  V  D  M  D  E  D  E  K  E  M  L  S  E  A  R  A  R  L  A  N  T  R  G  K  K  A  K  R  K  A  R  E  K  Q  L  E  E  A  R  R  L  A  S  L  Q  K  R  R  E  L  K  A  A  G  I  D  V  R  Q  R  K  R  K  R  R  G  I  D  Y  N  A  E  I  P  F  E  K  K  P  P  P  G  F  Y  D  V  T  E  E  D  R  P  V  D  Q  P  K  F  P  T  T  I  E  E  L  E  G  E  R  R  V  D  K  E  A  R  L  R  K  Q  D  I  A  R  N  K  I  A  E  R  Q  D  A  P  T  S  I  L  H  A  N  K  L  N  D  P  E  A  V  R  K  R  S  K  L  N  L  P  A  P  Q  I  P  D  H  E  L  E  A  I  A  K  I  G  I  A  S  D  L  I  G  G  D  E  L  S  E  G  N  A  A  T  R  A  L  L  A  N  Y  A  Q  T  P  Q  H  A  M  T  P  M  R  T  P  Q  R  T  P  S  T  K  Q  D  A  I  M  M  E  A  E  N  Q  R  R  L  T  Q  S  Q  T  P  L  L  G  G  D  N  P  L  L  H  P  S  D  F  S  G  V  T  P  K  K  R  E  V  Q  T  P  N  P  L  L  T  P  S  A  T  P  G  A  T  S  L  T  P  R  I  G  M  T  P  S  R  D  S  Y  G  M  T  P  K  G  T  P  M  R  D  E  L  R  I  N  E  E  M  D  M  H  S  N  A  K  L  G  Q  F  N  S  K  K  E  L  L  S  G  L  K  S  L  P  Q  P  K  N  E  Y  Q  I  V  I  Q  Q  P  P  E  E  N  E  E  P  E  E  K  I  E  E  D  M  S  D  R  I  A  R  E  K  A  E  E  E  A  K  R  Q  A  L  L  R  K  R  S  K  V  L  Q  R  E  L  P  R  P  P  I  A  S  L  E  L  I  K  S  S  L  M  R  A  D  E  D  K  S  S  F  V  P  P  T  L  I  E  Q  A  D  E  M  I  R  K  E  L  V  S  L  L  E  H  D  N  T  K  Y  P  L  D  E  K  P  E  K  E  K  K  K  G  V  K  R  K  I  V  A  E  P  A  I  E  D  F  E  E  D  E  L  K  E  :  A  D  G  L  I  K  D  E  A  H  F  L  R  V  A  M  G  H  E  S  E  S  L  D  E  F  V  E  I  H  K  A  T  L  N  D  I  M  Y  F  P  T  R  N  A  Y  G  L  S  S  V  A  G  N  M  E  K  L  A  A  L  Q  N  E  F  E  N  V  K  K  K  M  D  D  D  T  K  K  A  T  K  L  E  Q  K  I  K  V  L  T  N  G  Y  Q  :  M  R  A  G  K  L  W  S  Q  I  E  S  T  F  K  K  M  D  T  A  G  T  E  L  E  C  F  R  A  L  Q  K  Q  E  Q  L  A  A  S  H  R  I  N  N  M  W  E  E  V  Q  K  Q  K  E  L  E  R  T  L  Q  K  R  Y  G  D  L  I  A  D  T  Q  K  I  Q  H  L  M  D  E  Y  R  I  Q  D  Q  M  Q  E  E  V  A  A  K  N  R  A  L  E  L  A  K  A  E  M  A  E  K  D  S  V  P  S  A  D  D  V  E  P  S  G  T  G  Q  N  S  N  T  E  E  N  S  A  S  A  S  H  V  P  I  E  A  D  V  H  V  E  P  S  G  T  N  Q  C  S  N  A  E  E  N  S  A  S  I  E  A  D  N  V  H  V  E  P  S  G  T  S  Q  C  P  I  A  E  E  T  S  A  S  I  S  H  D  T  T  P  R  D  V  D  G  Q  V  Q  V  A  D  V  S  T  M  D  S  E  A  I  S  D  H  V  P  M  E  G  Q  Q  N  P  G  E  E  S  N  T  V  V  T  K  T  E  D  S  T  V  A  A  G  D  V  D  V  T  K  T  D  D  S  G  V  V  A  G  D  G  E  A  D  P  K  N  M  *  G  S  T  E  K  V  V  G  C  S  I  V  P  *  S  C  F  P  T  F  L  E  P  S  F  A  S  F  Q  E  Y  V  V  W  L  D  E  N  S  K  F  S  K  F  V  L  W  F  S  Y  L  C  W  Y  L  Q  N  N  Q  K  L  H  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44954" stop="44769"/>
                    <exon start="43821" stop="42127"/>
                    <exon start="41378" stop="41097"/>
                    <exon start="40842" stop="40033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2970</number_coding_nucleotides>
                  <number_encoded_amino_acids>990</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LANMRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDPNDDPRKLKPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDVRQRKRKRRGIDYNAEIPFEKKPPPGFYDVTEEDRPVDQPKFPTTIEELEGERRVDKEARLRKQDIARNKIAERQDAPTSILHANKLNDPEAVRKRSKLNLPAPQIPDHELEAIAKIGIASDLIGGDELSEGNAATRALLANYAQTPQHAMTPMRTPQRTPSTKQDAIMMEAENQRRLTQSQTPLLGGDNPLLHPSDFSGVTPKKREVQTPNPLLTPSATPGATSLTPRIGMTPSRDSYGMTPKGTPMRDELRINEEMDMHSNAKLGQFNSKKELLSGLKSLPQPKNEYQIVIQQPPEENEEPEEKIEEDMSDRIAREKAEEEAKRQALLRKRSKVLQRELPRPPIASLELIKSSLMRADEDKSSFVPPTLIEQADEMIRKELVSLLEHDNTKYPLDEKPEKEKKKGVKRKIVAEPAIEDFEEDELKEADGLIKDEAHFLRVAMGHESESLDEFVEIHKATLNDIMYFPTRNAYGLSSVAGNMEKLAALQNEFENVKKKMDDDTKKATKLEQKIKVLTNGYQMRAGKLWSQIESTFKKMDTAGTELECFRALQKQEQLAASHRINNMWEEVQKQKELERTLQKRYGDLIADTQKIQHLMDEYRIQDQMQEEVAAKNRALELAKAEMAEKDSVPSADDVEPSGTGQNSNTEENSASASHVPIEADVHVEPSGTNQCSNAEENSASIEADNVHVEPSGTSQCPIAEETSASISHDTTPRDVDGQVQVADVSTMDSEAISDHVPMEGQQNPGEESNTVVTKTEDSTVAAGDVDVTKTDDSGVVAGDGEADPKNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="51040" PGL_stop="46451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51040" e_stop="50867"/>
            <exon e_start="50280" e_stop="50169"/>
            <exon e_start="50062" e_stop="49958"/>
            <exon e_start="49846" e_stop="49769"/>
            <exon e_start="49406" e_stop="49351"/>
            <exon e_start="48970" e_stop="48913"/>
            <exon e_start="47831" e_stop="47709"/>
            <exon e_start="47566" e_stop="47471"/>
            <exon e_start="47303" e_stop="47232"/>
            <exon e_start="46775" e_stop="46451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.737" acc_prob="0.601" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.897" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.800" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51040" e_stop="50867" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.737" acc_prob="0.601">
            <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50280" e_stop="50169" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50062" e_stop="49958" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.949">
            <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49846" e_stop="49769" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.897" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49406" e_stop="49351" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48970" e_stop="48913" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.985">
            <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47831" e_stop="47709" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47708" i_stop="47567" i_length="142"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47566" e_stop="47471" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.826" acc_prob="0.977">
            <gDNA_intron_boundary i_start="47470" i_stop="47304" i_length="167"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="47303" e_stop="47232" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.800" acc_prob="0.968">
            <gDNA_intron_boundary i_start="47231" i_stop="46776" i_length="456"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="46775" e_stop="46451" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51040" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47709"/>
              <exon start="47566" stop="47471"/>
              <exon start="47303" stop="47232"/>
              <exon start="46775" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51037" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51035" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51035" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51035" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51027" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51022" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47709"/>
              <exon start="47566" stop="47483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51021" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51012" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51012" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50989" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50936" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50926" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47709"/>
              <exon start="47566" stop="47471"/>
              <exon start="47303" stop="47232"/>
              <exon start="46775" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47505" stop="47471"/>
              <exon start="47303" stop="47232"/>
              <exon start="46775" stop="46548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413059" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGGAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG : ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG : GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG : TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG : GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG : GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT : ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACA : GAGGAAGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTAGTTTTTGGTTGCATAGCTATTGCATCCTTG : GGATATACTGGTCTCCTCAATCTTATCGAGTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAG : GAATTGCTTGTAACTGGATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACACTTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGTTCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCACCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGTTAATGTGGAGATATAAATGATAATGAGGAGGAAAGGTTAGGGCGGATCAATCCTTCATTTGAAAAACA</gDNA_template>
            <first_frame> *  G  K  P  *  S  L  *  Q  R  R  K  K  E  *  L  K  N  G  V  Y  N  I  I  K  P  C  S  V  Y  T  Y  Y  F  F  K  C  S  T  Q  L  L  S  Q  S  F  C  S  S  F  K  F  I  V  F  F  L  Q  :  T  *  I  H  Q  V  F  C  K  I  S  P  E  *  K  D  G  L  C  C  C  F  S  C  W  K  F  *  F  *  R  *  L  K  S  L  *   : G  S  G  C  K  P  Y  *  G  I  *  H  G  *  G  S  I  C  K  E  K  E  R  C  *  A  E  G  *  *  S  N  A  C  S   : V  G  E  G  L  *  Q  N  H  D  V  T  V  N  K  K  E  A  G  C  H  F  W  L  V  *   : G  I  *  R  G  T  I  C  *  *  A  A  Y  F  A  M  G  S  T  :  V  H  Q  I  *  *  Q  R  Y  Q  N  Q  L  G  N  F  S  C  I   : Y  S  L  G  F  Y  K  S  *  C  *  V  E  A  F  T  V  F  G  L  R  L  C  I  *  D  I  *  E  I  K  S  I  *  A  S  N  S  H  V  Y   : R  G  R  R  R  *  R  T  D  D  E  D  G  K  K  A  A  S  F  S  C  I  S  F  W  L  H  S  Y  C  I  L   : G  I  Y  W  S  P  Q  S  Y  R  V  C  W  W  F  H  T  C  L  S  V  Q  *  S   : G  I  A  C  N  W  I  H  S  H  R  A  F  H  H  R  I  L  L  Q  I  V  Y  L  L  H  L  L  K  K  R  C  S  C  L  V  L  A  V  K  F  C  N  S  I  C  S  R  N  L  P  C  F  V  Y  R  I  *  L  S  S  T  C  K  D  A  P  S  S  E  D  S  R  I  K  Q  D  H  N  L  F  K  I  D  G  C  *  C  G  D  I  N  D  N  E  E  E  R  L  G  R  I  N  P  S  F  E  K   </first_frame>
            <second_frame>  E  E  N  P  N  P  F  S  R  E  E  R  R  S  S  S  K  M  V  F  T  I  S  S  N  P  V  Q  F  T  H  T  T  S  L  N  A  R  P  N  C  Y  L  K  A  S  V  P  V  S  N  L  S  F  S  F  F  R :   H  E  Y  I  R  F  S  V  K  S  R  L  N  K  R  M  V  C  A  A  A  S  A  A  G  S  S  S  S  S  D  D  S  N  P  Y  E  :  V  L  G  V  N  P  I  E  G  F  D  M  V  K  A  A  Y  A  R  R  R  K  D  A  E  R  R  G  D  E  A  T  L  A  Q  :  L  E  K  A  Y  D  K  I  M  M  S  Q  L  T  K  R  K  Q  G  V  T  F  G  S  F  K  :  V  S  K  E  V  R  Y  A  D  K  Q  P  I  L  P  W  G  P  R :   F  T  K  S  D  D  K  D  I  K  I  N  L  A  I  S  A  V  F  :  I  A  W  V  F  I  N  R  N  A  E  W  K  P  L  Q  F  L  A  F  A  F  V  Y  R  I  F  E  K  L  K  A  F  E  P  P  T  P  T  F  T  :  E  E  G  E  D  E  G  R  M  M  R  M  G  K  R  L  L  R  S  L  A  L  V  F  G  C  I  A  I  A  S  L  :  G  Y  T  G  L  L  N  L  I  E  Y  A  G  G  F  I  P  V  F  L  Y  N  N  Q  :  E  L  L  V  T  G  F  T  A  I  V  L  S  I  I  A  S  Y  Y  R  *  S  T  F  Y  T  C  *  R  R  D  A  V  A  L  C  *  L  S  N  F  V  I  L  F  V  P  E  I  C  L  V  L  S  I  G  F  D  *  A  A  L  V  R  M  H  Q  V  L  R  I  L  G  L  N  K  T  T  I  F  S  K  L  M  D  V  N  V  E  I  *  M  I  M  R  R  K  G  *  G  G  S  I  L  H  L  K  N  </second_frame>
            <third_frame>   R  K  T  L  I  P  L  A  E  K  K  E  G  V  A  Q  K  W  C  L  Q  Y  H  Q  T  L  F  S  L  H  I  L  L  L  *  M  L  D  P  I  V  I  S  K  L  L  F  Q  F  Q  I  Y  R  F  L  S  S   : D  M  N  T  S  G  F  L  *  N  L  A  *  I  K  G  W  S  V  L  L  L  Q  L  L  E  V  L  V  L  A  M  T  Q  I  L  M  R :   F  W  V  *  T  L  L  R  D  L  T  W  L  R  Q  H  M  Q  G  E  G  K  M  L  S  G  G  V  M  K  Q  R  L  L  S :   W  R  R  L  M  T  K  S  *  C  H  S  *  Q  K  G  S  R  V  S  L  L  A  R  L  R :   Y  L  K  R  Y  D  M  L  I  S  S  L  F  C  H  G  V  H   : G  S  P  N  L  M  T  K  I  S  K  S  T  W  Q  F  Q  L  Y  L :   *  L  G  F  L  *  I  V  M  L  S  G  S  L  Y  S  F  W  P  S  P  L  Y  I  G  Y  L  R  N  *  K  H  L  S  L  Q  L  P  R  L  Q :   R  K  A  K  M  K  D  G  *  *  G  W  E  K  G  C  F  V  L  L  H  *  F  L  V  A  *  L  L  H  P  W :   D  I  L  V  S  S  I  L  S  S  M  L  V  V  S  Y  L  S  F  C  T  I  I  R :   N  C  L  *  L  D  S  Q  P  S  C  F  P  S  S  H  L  I  T  D  S  L  P  S  T  L  V  E  E  E  M  Q  L  P  C  V  S  C  Q  I  L  *  F  Y  L  F  Q  K  F  A  L  F  C  L  *  D  L  I  E  Q  H  L  *  G  C  T  K  F  *  G  F  *  D  *  T  R  P  Q  S  F  Q  N  *  W  M  L  M  W  R  Y  K  *  *  *  G  G  K  V  R  A  D  Q  S  F  I  *  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51039" stop="50867"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="50062" stop="49958"/>
                    <exon start="49846" stop="49769"/>
                    <exon start="49406" stop="49351"/>
                    <exon start="48970" stop="48913"/>
                    <exon start="47831" stop="47709"/>
                    <exon start="47566" stop="47471"/>
                    <exon start="47303" stop="47232"/>
                    <exon start="46775" stop="46713"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENPNPFSREERRSSSKMVFTISSNPVQFTHTTSLNARPNCYLKASVPVSNLSFSFFRHEYIRFSVKSRLNKRMVCAAASAAGSSSSSDDSNPYEVLGVNPIEGFDMVKAAYARRRKDAERRGDEATLAQLEKAYDKIMMSQLTKRKQGVTFGSFKVSKEVRYADKQPILPWGPRFTKSDDKDIKINLAISAVFIAWVFINRNAEWKPLQFLAFAFVYRIFEKLKAFEPPTPTFTEEGEDEGRMMRMGKRLLRSLALVFGCIAIASLGYTGLLNLIEYAGGFIPVFLYNNQELLVTGFTAIVLSIIASYYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59827" PGL_stop="66601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59827" e_stop="60219"/>
            <exon e_start="61631" e_stop="61751"/>
            <exon e_start="62405" e_stop="62590"/>
            <exon e_start="62817" e_stop="62980"/>
            <exon e_start="63767" e_stop="63874"/>
            <exon e_start="64125" e_stop="64262"/>
            <exon e_start="64341" e_stop="64445"/>
            <exon e_start="64680" e_stop="64965"/>
            <exon e_start="65057" e_stop="65180"/>
            <exon e_start="66139" e_stop="66601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.945" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.791" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="59827" e_stop="60219" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60220" i_stop="61630" i_length="1411"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61631" e_stop="61751" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.971">
            <gDNA_intron_boundary i_start="61752" i_stop="62404" i_length="653"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62405" e_stop="62590" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62817" e_stop="62980" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63767" e_stop="63874" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64125" e_stop="64262" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.855" acc_prob="0.792">
            <gDNA_intron_boundary i_start="64263" i_stop="64340" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64341" e_stop="64445" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64446" i_stop="64679" i_length="234"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64680" e_stop="64965" e_length="286"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65057" e_stop="65180" e_length="124"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="66139" e_stop="66601" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59827" stop="60219"/>
              <exon start="61631" stop="61751"/>
              <exon start="62405" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63874"/>
              <exon start="64125" stop="64262"/>
              <exon start="64341" stop="64445"/>
              <exon start="64680" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59855" stop="60219"/>
              <exon start="61631" stop="61751"/>
              <exon start="62405" stop="62590"/>
              <exon start="62817" stop="62952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62454" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63874"/>
              <exon start="64125" stop="64262"/>
              <exon start="64341" stop="64445"/>
              <exon start="64680" stop="64911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62468" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63874"/>
              <exon start="64125" stop="64169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62527" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64403" stop="64445"/>
              <exon start="64680" stop="64965"/>
              <exon start="65057" stop="65122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64876" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64904" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64925" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACAAACAAGACTATGAACATTGCTATGGAGCAATAAAAATTCAAGAATCCATATGAACTTTGAAGAATTCAAAAACCCCAGTTGGAAATAGATCCCCTTTTTCAATTTCAATTTGAAAAAGAGAAAAAAAAAGTGATCTTTTTTTTTTCTTCACTGTAGTGTGATGAGAATCAGTTTTTTACGATTTGGGGTTTTGTTCTTGTTGTGTAATTGTTTGATTGGAGCTTATTGTTCCAAATCTGATGAAGCATATGTGACCCTTTTGTATGGCGATGAGTTCTTGCTTGGGGTTCGAGTACTTGGCAAGTCGATTAGGGATACTGGATCAACCAAAGATATGGTAGTTTTGGTCTCTGATGGGGTTTCTCAATATGCCAAACATCTACTCCAG : GCAGATGGTTGGATTGTGGAGAAAATTAGCTTACTGGCAAACCCAAATCAAGTGAGACCGAAGAGGTTTTGGGGCGTCTACACAAAGCTAAAAATATTTAACATGACCACTTACAAGAAAG : TGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG : GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG : TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAG : AATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAG : ACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAG : TTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG : GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG : GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGTATATGCTTCTTAAATTTTTTGATTGATATGGATGAGGATTATTGATCAATTCTCAAGTGTTTGGAACACTTCCATACTGGTAGTCAATAGTATATACTCATTTTTGTAGCTTCTTTCTCCTTTGATTTATGTAAATATTTATG</gDNA_template>
            <first_frame> R  Q  T  R  L  *  T  L  L  W  S  N  K  N  S  R  I  H  M  N  F  E  E  F  K  N  P  S  W  K  *  I  P  F  F  N  F  N  L  K  K  R  K  K  K  *  S  F  F  F  L  H  C  S  V  M  R  I  S  F  L  R  F  G  V  L  F  L  L  C  N  C  L  I  G  A  Y  C  S  K  S  D  E  A  Y  V  T  L  L  Y  G  D  E  F  L  L  G  V  R  V  L  G  K  S  I  R  D  T  G  S  T  K  D  M  V  V  L  V  S  D  G  V  S  Q  Y  A  K  H  L  L  Q  :  A  D  G  W  I  V  E  K  I  S  L  L  A  N  P  N  Q  V  R  P  K  R  F  W  G  V  Y  T  K  L  K  I  F  N  M  T  T  Y  K  K   : V  V  Y  L  D  A  D  T  I  V  V  K  S  I  E  D  L  F  K  C  G  K  F  C  A  N  L  K  H  S  E  R  L  N  S  G  V  M  V  V  E  P  S  E  K  V  F  N  D  M  M  S  K  V  T  T  L  P  S  Y  T  G   : G  D  Q  G  F  L  N  S  Y  Y  V  G  F  A  N  A  Q  V  Y  E  P  N  L  P  S  D  V  L  N  S  R  K  V  P  E  M  E  R  L  S  T  L  Y  N  A  D  V  G  L  Y  M  L  A  N  K  :  W  M  V  D  E  K  E  L  R  V  I  H  Y  T  L  G  P  L  K  P  W  D  W  W  T  S  W  L  L  K  P  V  D  V  W  Q  :  N  V  R  V  Q  L  Q  E  S  L  P  G  T  R  G  G  K  N  S  R  D  E  L  L  V  K  F  L  Y  L  L  P  L  L  L  I  A  F  C  Y  Y  R  S  F  L  Q  :  T  Q  S  L  W  H  H  I  R  Q  M  Y  Y  K  V  R  G  G  V  L  A  Y  A  S  V  P  P  S  A  I  S  S  N  Q  Q  :  F  P  N  G  M  Q  L  K  M  P  T  Y  L  G  A  V  S  V  C  V  C  F  A  A  A  L  V  S  L  G  L  P  L  L  I  I  P  R  Q  V  M  P  W  T  G  L  L  L  M  Y  E  W  T  F  T  L  F  F  L  L  F  G  S  Y  L  H  L  V  Y  Q  W  G  R  V  A  A  N  Q  P  G  Q  F  P  A  H  P  V  S  L  D  Y  E  P  G  K   : G  H  Q  R  Q  Q  S  C  C  D  N  E  A  W  Y  Y  G  L  G  M  A  F  L  A  I  A  A  P  A  L  P  G  V  F  G  V  T  S  L  F  L  R :   L  G  L  M  V  V  G  G  L  I  L  T  S  F  M  T  Y  A  S  E  H  L  S  I  R  S  F  A  R  G  F  E  E  R  N  T  P  R  S  R  S  V  C  F  L  C  *  S  C  Q  Y  F  W  F  *  L  N  Y  K  Q  S  S  S  *  S  H  L  *  L  V  L  T  Y  S  S  *  *  K  Y  V  E  Y  V  G  K  S  F  I  Y  *  C  D  F  Y  F  F  C  *  G  *  K  G  V  C  F  L  Y  M  L  L  K  F  F  D  *  Y  G  *  G  L  L  I  N  S  Q  V  F  G  T  L  P  Y  W  *  S  I  V  Y  T  H  F  C  S  F  F  L  L  *  F  M  *  I  F  M </first_frame>
            <second_frame>  D  K  Q  D  Y  E  H  C  Y  G  A  I  K  I  Q  E  S  I  *  T  L  K  N  S  K  T  P  V  G  N  R  S  P  F  S  I  S  I  *  K  R  E  K  K  S  D  L  F  F  F  F  T  V  V  *  *  E  S  V  F  Y  D  L  G  F  C  S  C  C  V  I  V  *  L  E  L  I  V  P  N  L  M  K  H  M  *  P  F  C  M  A  M  S  S  C  L  G  F  E  Y  L  A  S  R  L  G  I  L  D  Q  P  K  I  W  *  F  W  S  L  M  G  F  L  N  M  P  N  I  Y  S  R :   Q  M  V  G  L  W  R  K  L  A  Y  W  Q  T  Q  I  K  *  D  R  R  G  F  G  A  S  T  Q  S  *  K  Y  L  T  *  P  L  T  R  K  :  W  C  I  L  T  L  I  L  L  L  L  K  A  L  K  I  C  L  N  V  G  S  S  V  Q  I  *  N  I  L  R  D  *  I  L  E  S  W  W  L  S  H  Q  K  K  F  L  M  I  *  *  A  R  *  P  L  C  L  L  T  L  E  :  V  I  K  V  F  S  T  P  T  M  L  G  L  L  M  L  R  F  M  S  Q  I  C  R  Q  M  S  *  I  P  E  R  F  Q  K  W  R  D  F  L  L  F  T  M  Q  M  L  A  S  T  C  L  L  T  S :   G  W  W  M  K  K  N  F  E  L  F  I  T  H  L  A  R  L  N  R  G  I  G  G  R  L  G  C  *  N  L  L  M  S  G  R :   M  S  G  Y  N  F  K  N  L  Y  L  E  L  E  A  A  K  I  P  E  M  N  F  L  S  N  F  F  I  C  F  H  C  F  *  *  H  F  V  T  I  G  R  S  Y  R :   H  N  H  Y  G  T  I  S  D  K  C  T  T  R  S  E  E  V  S  *  L  M  P  L  F  L  H  L  P  S  A  P  T  S  S :   S  Q  M  V  C  S  *  R  C  L  L  I  W  V  R  Y  L  S  V  S  V  L  L  L  L  L  C  P  L  V  F  H  F  *  S  F  R  A  K  *  C  H  G  L  V  S  S  L  C  T  N  G  H  L  H  F  S  S  S  C  S  E  V  I  C  T  *  F  I  S  G  E  G  L  R  Q  I  N  L  V  N  F  R  L  I  L  Y  L  W  I  M  N  L  E  K  :  V  I  S  G  N  N  H  V  V  T  M  K  H  G  T  M  G  *  G  W  H  F  L  P  L  Q  P  Q  H  C  L  V  F  L  E  S  L  L  C  F  *   : G  *  V  *  W  S  *  A  A  L  F  *  R  P  S  *  H  M  L  Q  S  I  Y  R  L  D  H  S  R  G  A  L  K  K  G  T  H  Q  G  V  G  V  C  V  S  Y  V  D  H  V  N  I  F  G  F  S  L  T  T  S  N  H  L  L  D  L  I  C  N  L  F  *  H  I  L  P  S  E  N  M  *  N  M  L  G  N  H  L  F  T  N  V  I  F  I  F  F  V  K  V  K  K  V  Y  V  F  C  I  C  F  L  N  F  L  I  D  M  D  E  D  Y  *  S  I  L  K  C  L  E  H  F  H  T  G  S  Q  *  Y  I  L  I  F  V  A  S  F  S  F  D  L  C  K  Y  L   </second_frame>
            <third_frame>   T  N  K  T  M  N  I  A  M  E  Q  *  K  F  K  N  P  Y  E  L  *  R  I  Q  K  P  Q  L  E  I  D  P  L  F  Q  F  Q  F  E  K  E  K  K  K  V  I  F  F  F  S  S  L  *  C  D  E  N  Q  F  F  T  I  W  G  F  V  L  V  V  *  L  F  D  W  S  L  L  F  Q  I  *  *  S  I  C  D  P  F  V  W  R  *  V  L  A  W  G  S  S  T  W  Q  V  D  *  G  Y  W  I  N  Q  R  Y  G  S  F  G  L  *  W  G  F  S  I  C  Q  T  S  T  P   : G  R  W  L  D  C  G  E  N  *  L  T  G  K  P  K  S  S  E  T  E  E  V  L  G  R  L  H  K  A  K  N  I  *  H  D  H  L  Q  E  S :   G  V  S  *  R  *  Y  Y  C  C  *  K  H  *  R  S  V  *  M  W  E  V  L  C  K  F  K  T  F  *  E  T  E  F  W  S  H  G  G  *  A  I  R  K  S  F  *  *  Y  D  E  Q  G  D  H  F  A  F  L  H  W  R :   *  S  R  F  S  Q  L  L  L  C  W  V  C  *  C  S  G  L  *  A  K  F  A  V  R  C  L  K  F  Q  K  G  S  R  N  G  E  T  F  Y  S  L  Q  C  R  C  W  P  L  H  A  C  *  Q   : V  D  G  G  *  K  R  T  S  S  Y  S  L  H  T  W  P  A  *  T  V  G  L  V  D  V  L  A  V  K  T  C  *  C  L  A   : E  C  Q  G  T  T  S  R  I  S  T  W  N  *  R  R  Q  K  F  Q  R  *  T  S  C  Q  I  S  L  F  A  S  I  A  S  D  S  I  L  L  L  S  V  V  L  T   : D  T  I  T  M  A  P  Y  Q  T  N  V  L  Q  G  Q  R  R  C  P  S  L  C  L  C  S  S  I  C  H  Q  L  Q  P  A   : V  P  K  W  Y  A  V  E  D  A  Y  L  S  G  C  G  I  C  L  C  L  F  C  C  C  S  C  V  P  W  S  S  T  F  N  H  S  A  P  S  N  A  M  D  W  S  P  P  Y  V  R  M  D  I  Y  T  F  L  P  L  V  R  K  L  S  A  L  S  L  S  V  G  K  G  C  G  K  S  T  W  S  I  S  G  S  S  C  I  F  G  L  *  T  W  K  R :   S  S  A  A  T  I  M  L  *  Q  *  S  M  V  L  W  V  R  D  G  I  S  C  H  C  S  P  S  I  A  W  C  F  W  S  H  F  F  V  F  E  :  V  R  F  D  G  R  R  R  P  Y  F  D  V  L  H  D  I  C  F  R  A  S  I  D  *  I  I  R  E  G  L  *  R  K  E  H  T  K  E  *  E  C  V  F  L  M  L  I  M  S  I  F  L  V  L  A  *  L  Q  A  I  I  F  L  I  S  F  V  T  C  F  D  I  F  F  L  V  K  I  C  R  I  C  W  E  I  I  Y  L  L  M  *  F  L  F  F  L  L  R  L  K  R  C  M  F  S  V  Y  A  S  *  I  F  *  L  I  W  M  R  I  I  D  Q  F  S  S  V  W  N  T  S  I  L  V  V  N  S  I  Y  S  F  L  *  L  L  S  P  L  I  Y  V  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59965" stop="60219"/>
                    <exon start="61631" stop="61751"/>
                    <exon start="62405" stop="62590"/>
                    <exon start="62817" stop="62980"/>
                    <exon start="63767" stop="63874"/>
                    <exon start="64125" stop="64262"/>
                    <exon start="64341" stop="64445"/>
                    <exon start="64680" stop="64965"/>
                    <exon start="65057" stop="65180"/>
                    <exon start="66139" stop="66280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1626</number_coding_nucleotides>
                  <number_encoded_amino_acids>542</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFLHCSVMRISFLRFGVLFLLCNCLIGAYCSKSDEAYVTLLYGDEFLLGVRVLGKSIRDTGSTKDMVVLVSDGVSQYAKHLLQADGWIVEKISLLANPNQVRPKRFWGVYTKLKIFNMTTYKKVVYLDADTIVVKSIEDLFKCGKFCANLKHSERLNSGVMVVEPSEKVFNDMMSKVTTLPSYTGGDQGFLNSYYVGFANAQVYEPNLPSDVLNSRKVPEMERLSTLYNADVGLYMLANKWMVDEKELRVIHYTLGPLKPWDWWTSWLLKPVDVWQNVRVQLQESLPGTRGGKNSRDELLVKFLYLLPLLLIAFCYYRSFLQTQSLWHHIRQMYYKVRGGVLAYASVPPSAISSNQQFPNGMQLKMPTYLGAVSVCVCFAAALVSLGLPLLIIPRQVMPWTGLLLMYEWTFTLFFLLFGSYLHLVYQWGRVAANQPGQFPAHPVSLDYEPGKGHQRQQSCCDNEAWYYGLGMAFLAIAAPALPGVFGVTSLFLRLGLMVVGGLILTSFMTYASEHLSIRSFARGFEERNTPRSRSVCFLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62402" e_stop="62590"/>
            <exon e_start="62817" e_stop="62980"/>
            <exon e_start="63767" e_stop="63874"/>
            <exon e_start="64125" e_stop="64262"/>
            <exon e_start="64341" e_stop="64445"/>
            <exon e_start="64680" e_stop="64965"/>
            <exon e_start="65057" e_stop="65180"/>
            <exon e_start="66139" e_stop="66458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.994" acc_prob="0.791" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="62402" e_stop="62590" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62591" i_stop="62816" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62817" e_stop="62980" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62981" i_stop="63766" i_length="786"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63767" e_stop="63874" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63875" i_stop="64124" i_length="250"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64125" e_stop="64262" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.855" acc_prob="0.792">
            <gDNA_intron_boundary i_start="64263" i_stop="64340" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64341" e_stop="64445" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64446" i_stop="64679" i_length="234"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="64680" e_stop="64965" e_length="286"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64966" i_stop="65056" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65057" e_stop="65180" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65181" i_stop="66138" i_length="958"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66139" e_stop="66458" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62402" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63874"/>
              <exon start="64125" stop="64131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62454" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63874"/>
              <exon start="64125" stop="64262"/>
              <exon start="64341" stop="64445"/>
              <exon start="64680" stop="64911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62468" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63874"/>
              <exon start="64125" stop="64169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62527" stop="62590"/>
              <exon start="62817" stop="62980"/>
              <exon start="63767" stop="63871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64403" stop="64445"/>
              <exon start="64680" stop="64965"/>
              <exon start="65057" stop="65122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64876" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64904" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64925" stop="64965"/>
              <exon start="65057" stop="65180"/>
              <exon start="66139" stop="66458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTGGTGTATCTTGACGCTGATACTATTGTTGTTAAAAGCATTGAAGATCTGTTTAAATGTGGGAAGTTCTGTGCAAATTTAAAACATTCTGAGAGACTGAATTCTGGAGTCATGGTGGTTGAGCCATCAGAAAAAGTTTTTAATGATATGATGAGCAAGGTGACCACTTTGCCTTCTTACACTGGAG : GTGATCAAGGTTTTCTCAACTCCTACTATGTTGGGTTTGCTAATGCTCAGGTTTATGAGCCAAATTTGCCGTCAGATGTCTTAAATTCCAGAAAGGTTCCAGAAATGGAGAGACTTTCTACTCTTTACAATGCAGATGTTGGCCTCTACATGCTTGCTAACAAG : TGGATGGTGGATGAAAAAGAACTTCGAGTTATTCATTACACACTTGGCCCGCTTAAACCGTGGGATTGGTGGACGTCTTGGCTGTTAAAACCTGTTGATGTCTGGCAG : AATGTCAGGGTACAACTTCAAGAATCTCTACCTGGAACTAGAGGCGGCAAAAATTCCAGAGATGAACTTCTTGTCAAATTTCTTTATTTGCTTCCATTGCTTCTGATAGCATTTTGTTACTATCGGTCGTTCTTACAG : ACACAATCACTATGGCACCATATCAGACAAATGTACTACAAGGTCAGAGGAGGTGTCCTAGCTTATGCCTCTGTTCCTCCATCTGCCATCAGCTCCAACCAGCAG : TTCCCAAATGGTATGCAGTTGAAGATGCCTACTTATCTGGGTGCGGTATCTGTCTGTGTCTGTTTTGCTGCTGCTCTTGTGTCCCTTGGTCTTCCACTTTTAATCATTCCGCGCCAAGTAATGCCATGGACTGGTCTCCTCCTTATGTACGAATGGACATTTACACTTTTCTTCCTCTTGTTCGGAAGTTATCTGCACTTAGTTTATCAGTGGGGAAGGGTTGCGGCAAATCAACCTGGTCAATTTCCGGCTCATCCTGTATCTTTGGATTATGAACCTGGAAAAG : GTCATCAGCGGCAACAATCATGTTGTGACAATGAAGCATGGTACTATGGGTTAGGGATGGCATTTCTTGCCATTGCAGCCCCAGCATTGCCTGGTGTTTTTGGAGTCACTTCTTTGTTTTTGAG : GTTAGGTTTGATGGTCGTAGGCGGCCTTATTTTGACGTCCTTCATGACATATGCTTCAGAGCATCTATCGATTAGATCATTCGCGAGGGGCTTTGAAGAAAGGAACACACCAAGGAGTAGGAGTGTGTGTTTCTTATGTTGATCATGTCAATATTTTTGGTTTTAGCTTAACTACAAGCAATCATCTTCTTGATCTCATTTGTAACTTGTTTTGACATATTCTTCCTAGTGAAAATATGTAGAATATGTTGGGAAATCATTTATTTACTAATGTGATTTTTATTTTTTTTGTTAAGGTTAAAAAGGTGTATGTTTTCTGT</gDNA_template>
            <first_frame> Q  W  C  I  L  T  L  I  L  L  L  L  K  A  L  K  I  C  L  N  V  G  S  S  V  Q  I  *  N  I  L  R  D  *  I  L  E  S  W  W  L  S  H  Q  K  K  F  L  M  I  *  *  A  R  *  P  L  C  L  L  T  L  E  :  V  I  K  V  F  S  T  P  T  M  L  G  L  L  M  L  R  F  M  S  Q  I  C  R  Q  M  S  *  I  P  E  R  F  Q  K  W  R  D  F  L  L  F  T  M  Q  M  L  A  S  T  C  L  L  T  S :   G  W  W  M  K  K  N  F  E  L  F  I  T  H  L  A  R  L  N  R  G  I  G  G  R  L  G  C  *  N  L  L  M  S  G  R :   M  S  G  Y  N  F  K  N  L  Y  L  E  L  E  A  A  K  I  P  E  M  N  F  L  S  N  F  F  I  C  F  H  C  F  *  *  H  F  V  T  I  G  R  S  Y  R :   H  N  H  Y  G  T  I  S  D  K  C  T  T  R  S  E  E  V  S  *  L  M  P  L  F  L  H  L  P  S  A  P  T  S  S :   S  Q  M  V  C  S  *  R  C  L  L  I  W  V  R  Y  L  S  V  S  V  L  L  L  L  L  C  P  L  V  F  H  F  *  S  F  R  A  K  *  C  H  G  L  V  S  S  L  C  T  N  G  H  L  H  F  S  S  S  C  S  E  V  I  C  T  *  F  I  S  G  E  G  L  R  Q  I  N  L  V  N  F  R  L  I  L  Y  L  W  I  M  N  L  E  K  :  V  I  S  G  N  N  H  V  V  T  M  K  H  G  T  M  G  *  G  W  H  F  L  P  L  Q  P  Q  H  C  L  V  F  L  E  S  L  L  C  F  *   : G  *  V  *  W  S  *  A  A  L  F  *  R  P  S  *  H  M  L  Q  S  I  Y  R  L  D  H  S  R  G  A  L  K  K  G  T  H  Q  G  V  G  V  C  V  S  Y  V  D  H  V  N  I  F  G  F  S  L  T  T  S  N  H  L  L  D  L  I  C  N  L  F  *  H  I  L  P  S  E  N  M  *  N  M  L  G  N  H  L  F  T  N  V  I  F  I  F  F  V  K  V  K  K  V  Y  V  F  C </first_frame>
            <second_frame>  S  G  V  S  *  R  *  Y  Y  C  C  *  K  H  *  R  S  V  *  M  W  E  V  L  C  K  F  K  T  F  *  E  T  E  F  W  S  H  G  G  *  A  I  R  K  S  F  *  *  Y  D  E  Q  G  D  H  F  A  F  L  H  W  R :   *  S  R  F  S  Q  L  L  L  C  W  V  C  *  C  S  G  L  *  A  K  F  A  V  R  C  L  K  F  Q  K  G  S  R  N  G  E  T  F  Y  S  L  Q  C  R  C  W  P  L  H  A  C  *  Q   : V  D  G  G  *  K  R  T  S  S  Y  S  L  H  T  W  P  A  *  T  V  G  L  V  D  V  L  A  V  K  T  C  *  C  L  A   : E  C  Q  G  T  T  S  R  I  S  T  W  N  *  R  R  Q  K  F  Q  R  *  T  S  C  Q  I  S  L  F  A  S  I  A  S  D  S  I  L  L  L  S  V  V  L  T   : D  T  I  T  M  A  P  Y  Q  T  N  V  L  Q  G  Q  R  R  C  P  S  L  C  L  C  S  S  I  C  H  Q  L  Q  P  A   : V  P  K  W  Y  A  V  E  D  A  Y  L  S  G  C  G  I  C  L  C  L  F  C  C  C  S  C  V  P  W  S  S  T  F  N  H  S  A  P  S  N  A  M  D  W  S  P  P  Y  V  R  M  D  I  Y  T  F  L  P  L  V  R  K  L  S  A  L  S  L  S  V  G  K  G  C  G  K  S  T  W  S  I  S  G  S  S  C  I  F  G  L  *  T  W  K  R :   S  S  A  A  T  I  M  L  *  Q  *  S  M  V  L  W  V  R  D  G  I  S  C  H  C  S  P  S  I  A  W  C  F  W  S  H  F  F  V  F  E  :  V  R  F  D  G  R  R  R  P  Y  F  D  V  L  H  D  I  C  F  R  A  S  I  D  *  I  I  R  E  G  L  *  R  K  E  H  T  K  E  *  E  C  V  F  L  M  L  I  M  S  I  F  L  V  L  A  *  L  Q  A  I  I  F  L  I  S  F  V  T  C  F  D  I  F  F  L  V  K  I  C  R  I  C  W  E  I  I  Y  L  L  M  *  F  L  F  F  L  L  R  L  K  R  C  M  F  S   </second_frame>
            <third_frame>   V  V  Y  L  D  A  D  T  I  V  V  K  S  I  E  D  L  F  K  C  G  K  F  C  A  N  L  K  H  S  E  R  L  N  S  G  V  M  V  V  E  P  S  E  K  V  F  N  D  M  M  S  K  V  T  T  L  P  S  Y  T  G   : G  D  Q  G  F  L  N  S  Y  Y  V  G  F  A  N  A  Q  V  Y  E  P  N  L  P  S  D  V  L  N  S  R  K  V  P  E  M  E  R  L  S  T  L  Y  N  A  D  V  G  L  Y  M  L  A  N  K  :  W  M  V  D  E  K  E  L  R  V  I  H  Y  T  L  G  P  L  K  P  W  D  W  W  T  S  W  L  L  K  P  V  D  V  W  Q  :  N  V  R  V  Q  L  Q  E  S  L  P  G  T  R  G  G  K  N  S  R  D  E  L  L  V  K  F  L  Y  L  L  P  L  L  L  I  A  F  C  Y  Y  R  S  F  L  Q  :  T  Q  S  L  W  H  H  I  R  Q  M  Y  Y  K  V  R  G  G  V  L  A  Y  A  S  V  P  P  S  A  I  S  S  N  Q  Q  :  F  P  N  G  M  Q  L  K  M  P  T  Y  L  G  A  V  S  V  C  V  C  F  A  A  A  L  V  S  L  G  L  P  L  L  I  I  P  R  Q  V  M  P  W  T  G  L  L  L  M  Y  E  W  T  F  T  L  F  F  L  L  F  G  S  Y  L  H  L  V  Y  Q  W  G  R  V  A  A  N  Q  P  G  Q  F  P  A  H  P  V  S  L  D  Y  E  P  G  K   : G  H  Q  R  Q  Q  S  C  C  D  N  E  A  W  Y  Y  G  L  G  M  A  F  L  A  I  A  A  P  A  L  P  G  V  F  G  V  T  S  L  F  L  R :   L  G  L  M  V  V  G  G  L  I  L  T  S  F  M  T  Y  A  S  E  H  L  S  I  R  S  F  A  R  G  F  E  E  R  N  T  P  R  S  R  S  V  C  F  L  C  *  S  C  Q  Y  F  W  F  *  L  N  Y  K  Q  S  S  S  *  S  H  L  *  L  V  L  T  Y  S  S  *  *  K  Y  V  E  Y  V  G  K  S  F  I  Y  *  C  D  F  Y  F  F  C  *  G  *  K  G  V  C  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62404" stop="62590"/>
                    <exon start="62817" stop="62980"/>
                    <exon start="63767" stop="63874"/>
                    <exon start="64125" stop="64262"/>
                    <exon start="64341" stop="64445"/>
                    <exon start="64680" stop="64965"/>
                    <exon start="65057" stop="65180"/>
                    <exon start="66139" stop="66280"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVYLDADTIVVKSIEDLFKCGKFCANLKHSERLNSGVMVVEPSEKVFNDMMSKVTTLPSYTGGDQGFLNSYYVGFANAQVYEPNLPSDVLNSRKVPEMERLSTLYNADVGLYMLANKWMVDEKELRVIHYTLGPLKPWDWWTSWLLKPVDVWQNVRVQLQESLPGTRGGKNSRDELLVKFLYLLPLLLIAFCYYRSFLQTQSLWHHIRQMYYKVRGGVLAYASVPPSAISSNQQFPNGMQLKMPTYLGAVSVCVCFAAALVSLGLPLLIIPRQVMPWTGLLLMYEWTFTLFFLLFGSYLHLVYQWGRVAANQPGQFPAHPVSLDYEPGKGHQRQQSCCDNEAWYYGLGMAFLAIAAPALPGVFGVTSLFLRLGLMVVGGLILTSFMTYASEHLSIRSFARGFEERNTPRSRSVCFLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="68853" PGL_stop="68631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68853" e_stop="68631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="68853" e_stop="68631" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68853" stop="68631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACGTTTCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAATCACTAAAATTTTCCTTCTTTGCATATATTTTTCTCTCAAATAAATCAAAGTGTCGATTGACTGAGTCTGTGTGACTTGTTGTTGTTCTGAAGTTCGCTGAAGTTAAAGAAATTCGAGGTACCGCTATTTCTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</gDNA_template>
            <first_frame> R  H  V  S  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  N  F  P  S  L  H  I  F  F  S  Q  I  N  Q  S  V  D  *  L  S  L  C  D  L  L  L  F  *  S  S  L  K  L  K  K  F  E  V  P  L  F  L  N  R  F  N  P  F  Y  L  E  R  N  </first_frame>
            <second_frame>  D  T  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  S  I  T  K  I  F  L  L  C  I  Y  F  S  L  K  *  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  E  V  R  *  S  *  R  N  S  R  Y  R  Y  F  L  T  G  L  I  R  F  I  L  R  E  I </second_frame>
            <third_frame>   T  R  F  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  Q  S  L  K  F  S  F  F  A  Y  I  F  L  S  N  K  S  K  C  R  L  T  E  S  V  *  L  V  V  V  L  K  F  A  E  V  K  E  I  R  G  T  A  I  S  *  Q  V  *  S  V  L  S  *  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0008H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="73977" PGL_stop="75765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73977" e_stop="74776"/>
            <exon e_start="75353" e_stop="75765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="1.000" e_score="0.950"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="73977" e_stop="74776" e_length="800"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74777" i_stop="75352" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="75353" e_stop="75765" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73977" stop="74542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73978" stop="74551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73978" stop="74246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73981" stop="74642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73982" stop="74674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73983" stop="74776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73983" stop="74655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="74595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="74487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73990" stop="74664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73993" stop="74776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73993" stop="74776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73995" stop="74577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73998" stop="74475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74004" stop="74297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74061" stop="74641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74128" stop="74773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74139" stop="74697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74267" stop="74776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74299" stop="74776"/>
              <exon start="75353" stop="75423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74299" stop="74667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74490" stop="74776"/>
              <exon start="75353" stop="75765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGCCTTTGAAAAAATGTTTAAAACTTTGAAAAACGATTTTCAAATTTGCGAAGAAATCGGCCGTGGGAGATTCGGTACCGTCTACCGCTGCTTTTCTCCGGCGACCGGAGAATCCTACGCCTGTAAATCTATCGACAAAAACCTCCTCATTGATTCCACCGACCGTGAATGTCTCGATAAAGAACCCAAAATTCTTCAACTTCTTTCAGGTAACCCCAACATTCTTCATCTTTATAAGGTTTACGAAGATGACGATTTCCTTCATATGGTAACCGATTTCTGCCCGAATAGTGATTTATATGAAAGGGTTTCATCTGGGTCGTTGTCAGAATCGGCTGCCGCGGCTATTCTGATTCAATTGGTTTCTGCGATTAGCTATTGTCATCATATGGGTGTAGCTCATCGTGACATTAAGCCGGATAATGTGTTGTTTGATTCTGAGAATAGATTGAAGCTTGCTGATTTTGGATCTGCGGAGTGGTTTGCTGGTTGTGATGGGAGGAAGATGAATGGGGTTGTGGGTACGCCGTATTACGTTGCGCCGGAGGTTTTAATGGGGAAAGAGTATAATGAGAAAGTTGATGTGTGGAGTTTGGGGGTTATTTTGTATATTATGCTTTCTGGGGTTCCTCCTTTTTACGGTGAAACGCCGACTGAAACTTTTCAAGCTGTTCTCAGAGGGAATCTGAGGTTTCCGACGAGGAATTTCCGGTCAGTTTCGCCTGAAGCGAAAGATTTGTTGAGGAAGATGATATGTAAAGATGTTTCCAGAAGATTTTCAGCTGAACAAGTATTGA : GACATCCATGGGTGCTTAATGGAGGAGAAACAAGATCAATGGTTGATTGAACTTGAACAAGATACTAATAAATACTAGTAGCAGTACAAATTTTGATGATAAAAAAGCTTCTTCTAATGTGTTTGTTTGTGTATATTGCACCAAAAAAATAAAAATAAAATTATGGTTTGTTATGTTGTGGAGAAGAATCTTGTAGATGATAATGAATCTCCTACTTTATATTATAATATAACAAGAAGAAAAAAAATTTCAGGCTATATAAAAAGATCCAAGCTTACCCCACCTTTATATTTATTATTATTATTTTTAATTATAAAGGGTTGAGGGAGAGAGGGATATATGTATGTTTTGGTGCTGTATCAAAGTTTTGTTGTTGAGTTTACTATGTAATAAAAAAAATTTCTACTTTTGTT</gDNA_template>
            <first_frame> Q  S  L  *  K  N  V  *  N  F  E  K  R  F  S  N  L  R  R  N  R  P  W  E  I  R  Y  R  L  P  L  L  F  S  G  D  R  R  I  L  R  L  *  I  Y  R  Q  K  P  P  H  *  F  H  R  P  *  M  S  R  *  R  T  Q  N  S  S  T  S  F  R  *  P  Q  H  S  S  S  L  *  G  L  R  R  *  R  F  P  S  Y  G  N  R  F  L  P  E  *  *  F  I  *  K  G  F  I  W  V  V  V  R  I  G  C  R  G  Y  S  D  S  I  G  F  C  D  *  L  L  S  S  Y  G  C  S  S  S  *  H  *  A  G  *  C  V  V  *  F  *  E  *  I  E  A  C  *  F  W  I  C  G  V  V  C  W  L  *  W  E  E  D  E  W  G  C  G  Y  A  V  L  R  C  A  G  G  F  N  G  E  R  V  *  *  E  S  *  C  V  E  F  G  G  Y  F  V  Y  Y  A  F  W  G  S  S  F  L  R  *  N  A  D  *  N  F  S  S  C  S  Q  R  E  S  E  V  S  D  E  E  F  P  V  S  F  A  *  S  E  R  F  V  E  E  D  D  M  *  R  C  F  Q  K  I  F  S  *  T  S  I  E :   T  S  M  G  A  *  W  R  R  N  K  I  N  G  *  L  N  L  N  K  I  L  I  N  T  S  S  S  T  N  F  D  D  K  K  A  S  S  N  V  F  V  C  V  Y  C  T  K  K  I  K  I  K  L  W  F  V  M  L  W  R  R  I  L  *  M  I  M  N  L  L  L  Y  I  I  I  *  Q  E  E  K  K  F  Q  A  I  *  K  D  P  S  L  P  H  L  Y  I  Y  Y  Y  Y  F  *  L  *  R  V  E  G  E  R  D  I  C  M  F  W  C  C  I  K  V  L  L  L  S  L  L  C  N  K  K  N  F  Y  F  C  </first_frame>
            <second_frame>  K  A  F  E  K  M  F  K  T  L  K  N  D  F  Q  I  C  E  E  I  G  R  G  R  F  G  T  V  Y  R  C  F  S  P  A  T  G  E  S  Y  A  C  K  S  I  D  K  N  L  L  I  D  S  T  D  R  E  C  L  D  K  E  P  K  I  L  Q  L  L  S  G  N  P  N  I  L  H  L  Y  K  V  Y  E  D  D  D  F  L  H  M  V  T  D  F  C  P  N  S  D  L  Y  E  R  V  S  S  G  S  L  S  E  S  A  A  A  A  I  L  I  Q  L  V  S  A  I  S  Y  C  H  H  M  G  V  A  H  R  D  I  K  P  D  N  V  L  F  D  S  E  N  R  L  K  L  A  D  F  G  S  A  E  W  F  A  G  C  D  G  R  K  M  N  G  V  V  G  T  P  Y  Y  V  A  P  E  V  L  M  G  K  E  Y  N  E  K  V  D  V  W  S  L  G  V  I  L  Y  I  M  L  S  G  V  P  P  F  Y  G  E  T  P  T  E  T  F  Q  A  V  L  R  G  N  L  R  F  P  T  R  N  F  R  S  V  S  P  E  A  K  D  L  L  R  K  M  I  C  K  D  V  S  R  R  F  S  A  E  Q  V  L   : R  H  P  W  V  L  N  G  G  E  T  R  S  M  V  D  *  T  *  T  R  Y  *  *  I  L  V  A  V  Q  I  L  M  I  K  K  L  L  L  M  C  L  F  V  Y  I  A  P  K  K  *  K  *  N  Y  G  L  L  C  C  G  E  E  S  C  R  *  *  *  I  S  Y  F  I  L  *  Y  N  K  K  K  K  N  F  R  L  Y  K  K  I  Q  A  Y  P  T  F  I  F  I  I  I  I  F  N  Y  K  G  L  R  E  R  G  I  Y  V  C  F  G  A  V  S  K  F  C  C  *  V  Y  Y  V  I  K  K  I  S  T  F  V </second_frame>
            <third_frame>   K  P  L  K  K  C  L  K  L  *  K  T  I  F  K  F  A  K  K  S  A  V  G  D  S  V  P  S  T  A  A  F  L  R  R  P  E  N  P  T  P  V  N  L  S  T  K  T  S  S  L  I  P  P  T  V  N  V  S  I  K  N  P  K  F  F  N  F  F  Q  V  T  P  T  F  F  I  F  I  R  F  T  K  M  T  I  S  F  I  W  *  P  I  S  A  R  I  V  I  Y  M  K  G  F  H  L  G  R  C  Q  N  R  L  P  R  L  F  *  F  N  W  F  L  R  L  A  I  V  I  I  W  V  *  L  I  V  T  L  S  R  I  M  C  C  L  I  L  R  I  D  *  S  L  L  I  L  D  L  R  S  G  L  L  V  V  M  G  G  R  *  M  G  L  W  V  R  R  I  T  L  R  R  R  F  *  W  G  K  S  I  M  R  K  L  M  C  G  V  W  G  L  F  C  I  L  C  F  L  G  F  L  L  F  T  V  K  R  R  L  K  L  F  K  L  F  S  E  G  I  *  G  F  R  R  G  I  S  G  Q  F  R  L  K  R  K  I  C  *  G  R  *  Y  V  K  M  F  P  E  D  F  Q  L  N  K  Y  *  :  D  I  H  G  C  L  M  E  E  K  Q  D  Q  W  L  I  E  L  E  Q  D  T  N  K  Y  *  *  Q  Y  K  F  *  *  *  K  S  F  F  *  C  V  C  L  C  I  L  H  Q  K  N  K  N  K  I  M  V  C  Y  V  V  E  K  N  L  V  D  D  N  E  S  P  T  L  Y  Y  N  I  T  R  R  K  K  I  S  G  Y  I  K  R  S  K  L  T  P  P  L  Y  L  L  L  L  F  L  I  I  K  G  *  G  R  E  G  Y  M  Y  V  L  V  L  Y  Q  S  F  V  V  E  F  T  M  *  *  K  K  F  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73978" stop="74776"/>
                    <exon start="75353" stop="75402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAFEKMFKTLKNDFQICEEIGRGRFGTVYRCFSPATGESYACKSIDKNLLIDSTDRECLDKEPKILQLLSGNPNILHLYKVYEDDDFLHMVTDFCPNSDLYERVSSGSLSESAAAAILIQLVSAISYCHHMGVAHRDIKPDNVLFDSENRLKLADFGSAEWFAGCDGRKMNGVVGTPYYVAPEVLMGKEYNEKVDVWSLGVILYIMLSGVPPFYGETPTETFQAVLRGNLRFPTRNFRSVSPEAKDLLRKMICKDVSRRFSAEQVLRHPWVLNGGETRSMVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75470" stop="75676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVCLCILHQKNKNKIMVCYVVEKNLVDDNESPTLYYNITRRKKISGYIKRSKLTPPLYLLLLFLIIKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 181 chains have been computed
$ 
$ memory statistics:
$ 404288 bytes spliced alignments in total
$ 106 spliced alignments have been stored
$ 3814 bytes was the average size of a spliced alignment
$ 22104 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1842 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 232 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:08:24
-->
