<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 08:39:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269326" ref_strand="+" ref_description="SGN-E269326 [cLEM-18-N21]">
      <seq>tcagtgtcatggaagtgaagtgtgtcttcaacgtgttttgagggcgtgtctggaggctggagcaaagcttgcggaaccaggtgaattcactctgcgcgccttcttaaatggtcgtttggatctttctcaagctgagaatgtcgaaaagttaatatcagcaaagtcagtggctgctgcagatgctgcattggcaggaatagagggtgggttttcttctttggtcaaatcactaagaactcagtgtatggagttgctaactgaaattgaagctcgtcttgacttcgatgacgagatgccaccccttgatctgaatcttattatggacaaaatatatgggatgctgcatgatctggataatgcgctggaaactgccaactatgacaagcttctgcagtcaggactacagattgcaattattggtcgacctaatgttgggaaatcaagccttcttaatgcatggagcaaaactgatagagcaatagttacaaatattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="2364" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2064" g_stop="1985" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1984" i_stop="1705" i_length="280">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1704" g_stop="1583" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="202" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1582" i_stop="1405" i_length="178">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.310" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1404" g_stop="1201" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="406" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1200" i_stop="953" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="952" g_stop="893" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="466" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="892" i_stop="42" i_length="851">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41" g_stop="12" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="496" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E269326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2064" e_stop="1985"/>
          <exon e_start="1704" e_stop="1583"/>
          <exon e_start="1404" e_stop="1201"/>
          <exon e_start="952" e_stop="893"/>
          <exon e_start="41" e_stop="12"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGTCATGGAAGTGAAGTGTGTCTTCAACGTGTTTTGAGGGCGTGTCTGGAGGCTGGAGCAAAGCTTGCGGAACCAGGTTAGCTTCATCCTTGTATTCTTTAATTGACTGTTTTGATGTCTATAACCTGCAGCAGTTACGGTTTTGATGAGAATTGATCTCTATAGTTCGAAAACTGTTGTGAAGATTTATTTGTCTGTACATCACTACATCATTCTATAGTCCCGTAGCATTGACTTGTCAAAGCTTTAGTTACTAGGCAAATGCACAGCAACTGTCTCCTTTTTCTGTGCAGCCATAGAATAGGTGAGAATCTTTCTTCTCCAGCTCACCTCTTTTAATGTTTCACTTTTATTAGGTGAATTCACTCTGCGCGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTCGAAAAGTTAATATCAGCAAAGTCAGTGGCTGCTGCAGATGCTGCATTGGCAGGAATAGAGGTGTTCAGCTGTATAAAATCACTTTTTAATTACAAGAACTGTTGACCCTTCTAAAAAGAAAAGAACTGTTGACCCTTTGATACATTAACAAGGGCACAGATTCAGCACTAAGTTTTATTTTGTTTGCCTTTTATCCTAGTGCTGGGGAATGATGCTGAATGATAGTTCCTTTTGTCAGGGTGGGTTTTCTTCTTTGGTCAAATCACTAAGAACTCAGTGTATGGAGTTGCTAACTGAAATTGAAGCTCGTCTTGACTTCGATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAGGTTTATATTGCACTAAGACTGACCAAGTTCTTATAAAAGCCTAGTGGACTTTTTTCCTGAGAACTAAATAACAAAGCAAGGAGGAGAAAGGAACAAAGGACGCATGTCTTAACTTGTCATTGAATTTGAGAGTAACTTAAAGCACATCTAGCTGTTTAGCTGGCTGTCCAAAAATGGATTTTTTTTTTATGTTTCCCTGCTTTGAACTAATAATTAAGACAACATAATTTTCAATGACTATCTTGCAGATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAAGTATGTTCCACCAATATACCCATTATTTACCATCTCATCATTGATTCCTGTAATTATTGTTTTTTTAAATAGTTATCACTGCTTCTCTTGACAGTGGCATAAACTTTTAACTCAGTAACTAAATCTGAAACAAAATGTGGACCAGTAAATAGAAATCTCACCTGTAATTAGAAACATATACGAAGAAGTTCCATGCAATGCCTAGCTCCCAGTTCTTATAATTTGCATAGGATGTGACTTGCACCTTTAGCTCTAGTTGAGACATTCCAGGGATCCATTGAAGAACACTTCATCACTTTGCTTATTTCTAAAGACCAAATTGTTCCTTCTGGTATGGAAAGTATATATGGATTTGAATCGTTAGTTTCAGAATCTAAATTGTATACTAGCCAGCAATAGGTTATGCTTGACTCAAGTTATCACGATGAATTTAGCTACAAGCCACAATTTGGAACTTTTCCCAAACCAGCAACTGTAGGACAGTAAAAAAAACTAATAATGAACCATTTCAATCCTCTAATTTTTAATTGTCTACCTTAAATTGTCGCATAATATAAAATAACTTGTGTCCTTAACTGTGCGTGATATTTTCAGTATTGCAACTCTTATTGCGTTCCACTTGCTTCTATGACCATATAAACATGATTGTTAATCTTTACTCAAACCCCTACTACTACTTATAACAAGACCATAAATAGAAAGTGTTTCATGACAAATATTTTCCTCAAAATATAAAGTCATATTAAGCACACTCCCATTCTTTAGAATTTCTCTAGTCTAAAGTGTCTGCTTCCCGTGCTATTATCTTGCTGGCATTCATTTCTAATCACGTGCCTTCTATTAGCGTGCAGACTGATAGAGCAATAGTTACAAATATTGCT</genome_strand>
        <mrna_strand>TCAGTGTCATGGAAGTGAAGTGTGTCTTCAACGTGTTTTGAGGGCGTGTCTGGAGGCTGGAGCAAAGCTTGCGGAACCAG........................................................................................................................................................................................................................................................................................GTGAATTCACTCTGCGCGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTCGAAAAGTTAATATCAGCAAAGTCAGTGGCTGCTGCAGATGCTGCATTGGCAGGAATAGAG..................................................................................................................................................................................GGTGGGTTTTCTTCTTTGGTCAAATCACTAAGAACTCAGTGTATGGAGTTGCTAACTGAAATTGAAGCTCGTCTTGACTTCGATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAG........................................................................................................................................................................................................................................................ATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCAATAGTTACAAATATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585038" ref_strand="+" ref_description="SGN-E585038 [66755]">
      <seq>gccttttccatcttcccaaaattgtctatcccaattgacacaacactctcttctctcttccctctttcttcttctcaacccactatcaaacctcatgctatttctaaagagagtagtactctggtgctgaagcaagatgagaggttattggggtctggttcagtgacccctcttgacccagctgtgaatactagcaccattgctgctattgtcacttctttgggtggtccagcagctgcagttgggattattcggttatctggtccatttgcagtgcctatagttggtcgtgtatttcatcctaaggtgaaaaagaagaaaaggagttcgtctgagtggaggcctaagagccatgttgtagagtatggtgttgtttctgactctcatgggaatgtgattgatgaggttctggtggttcctatgctggctccaaagtcatacactagagaagatgtgatagaacttcagtgtcatggaagtgaagtgtgtcttcaacgtgttttgagggcttgtctggaggctggtgcgaggctcgcggagccaggcgagttcactctccnggccttcttaaatggtcgtttggatctttctcaagctgagaatgtggaaaagttaatatctgccaagtcagtggctgctgcagatgctgcatttagcaggaattgacggtgcgtttacttcggtggtcaaatcactaagaactcggtgtatggagttgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="3902" stop="1050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3602" g_stop="3485" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3484" i_stop="3119" i_length="366">
            <donor d_prob="0.999" d_score="0.74"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3118" g_stop="3114" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="114" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3113" i_stop="2856" i_length="258">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2855" g_stop="2563" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="405" r_length="291" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2562" i_stop="2124" i_length="439">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2123" g_stop="1985" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="544" r_length="139" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1984" i_stop="1705" i_length="280">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.783" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1704" g_stop="1583" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="667" r_length="123" r_score="0.893"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1582" i_stop="1405" i_length="178">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.310" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1404" g_stop="1350" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="722" r_length="55" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E585038" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3602" e_stop="3485"/>
          <exon e_start="3118" e_stop="3114"/>
          <exon e_start="2855" e_stop="2563"/>
          <exon e_start="2123" e_stop="1985"/>
          <exon e_start="1704" e_stop="1583"/>
          <exon e_start="1404" e_stop="1350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAGGTAACTCCTTTCATCTTCCTGCATACCCATTTTATAATGCTAATGTTTCAATCTATTCATTGAATATAGTTATCTAGTGTTGAAAGAATTGTTTTTTAGTGATAAAGATTCAATCTTTTTATTGCATATACTACTCCTGTGCTGAAATAATTGAATTTAATGCTAATCTTGTTATTGCAGAAAATGCTGTGGTATTGAAAAAATTGATTTTTGTTGATAAAGATTCAATCTTTTAATTGCAGAGAATTATGTGGTTCTACAAGAATTGGGTTTTAATGCTGAAGTTTCAATTTTTCTGTTGCAAAGAATACTATGGTGCTGAAAGAATTGTTTTTGACTTTTAAAGATCCAATCTTTTTATTGCAGAGAGTACTCTGGTACTGAAAAAAAATTGGATTTTGGTGCTGAAATTTCAATCTTTCTGTTGCAGAGAATACTATGGAGCTGAAAGAATTGTTTTTTACTGATAATATTTTGATCTTTTTATAGAAGAGAATAATGTGGTTGTAAAAGAATTAGGTTTAATGCTTAAGTTTCAATTTTTCTTTTATTGTATAGATTCTACTCTGGTGCTGAAAAATTGATTTGAATGCTTAAGTTTCAATGTTTTTTATTTATTTTTATTGCAGAGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACCCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAGGTATAATTTGAAACTCTAGATTTTTCCTTCTGGTTGGTGCATTTATTCTTTAGATTTGACATGTGAATTACACTACATTGATGATTTTAAGAGTTTGGTGCTGTTGTTGCTTCATATCTGAATTAAGCCTTTGCGACGTCTTCTTATTATATCTAGTACTTTTATCTGCTCTTATTAAGTTCATACCTGTGGGGAATTGGTTCTTCATTTAATTCTATTATAACCCCGTAGATAAGGTGAGGTAAAGGTGTCTATAGAATGGAAACGAGAGTCTGTTTCAGGACATTTCTAGTGGCTTCTGCCTTTACCTTAAAGAAATAAAGAGACGCTAAAATAATGAATATGTTGGAAGTCATTGTTAATAGTTTCAATAGTTTTATTCTTCTTCTTCTTCTTCTATCTCTCTCTCTCTAAATTCCTTTTTCTTTTTCTTGCTTAGGTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAGAGCTTCAGTGTCATGGAAGTGAAGTGTGTCTTCAACGTGTTTTGAGGGCGTGTCTGGAGGCTGGAGCAAAGCTTGCGGAACCAGGTTAGCTTCATCCTTGTATTCTTTAATTGACTGTTTTGATGTCTATAACCTGCAGCAGTTACGGTTTTGATGAGAATTGATCTCTATAGTTCGAAAACTGTTGTGAAGATTTATTTGTCTGTACATCACTACATCATTCTATAGTCCCGTAGCATTGACTTGTCAAAGCTTTAGTTACTAGGCAAATGCACAGCAACTGTCTCCTTTTTCTGTGCAGCCATAGAATAGGTGAGAATCTTTCTTCTCCAGCTCACCTCTTTTAATGTTTCACTTTTATTAGGTGAATTCACTCTGCGCGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTCGAAAAGTTAATATCAGCAAAGTCAGTGGCTGCTGCAGATGCTGCA-TTGGCAGGAATAGAGGTGTTCAGCTGTATAAAATCACTTTTTAATTACAAGAACTGTTGACCCTTCTAAAAAGAAAAGAACTGTTGACCCTTTGATACATTAACAAGGGCACAGATTCAGCACTAAGTTTTATTTTGTTTGCCTTTTATCCTAGTGCTGGGGAATGATGCTGAATGATAGTTCCTTTTGTCAGGGTGGGTTTTCTTCTTTGGTCAAATCACTAAGAACTCAGTGTATGGAGTTGCTAA</genome_strand>
        <mrna_strand>GCCTTTTCCATCTTCCCAAAATTGTCTATCCCAATTGACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTC-TCAAC--C-C-A-CTA-T-C-AAACCTCATGCTATTTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................AGAGT..................................................................................................................................................................................................................................................................--AGTACTCTGGTGCTGAAGCAAGATGAGAGGTTATTGGGGTCTGGTTCAGTGACCCCTCTTGACCCAGCTGTGAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGGATTATTCGGTTATCTGGTCCATTTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCTAAGGTGAAAAAGAAGAAAAGGAGTTCGTCTGAGTGGAGGCCTAAGAGCCATGTTGTAGAGTATGGTGTTGTTTCTGACTCTCATGGGAATGTGATTGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCATACACTAGAGAAGATGTGATAGAACTTCAGTGTCATGGAAGTGAAGTGTGTCTTCAACGTGTTTTGAGGGCTTGTCTGGAGGCTGGTGCGAGGCTCGCGGAGCCAG........................................................................................................................................................................................................................................................................................GCGAGTTCACTCTCCNGGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTGGAAAAGTTAATATCTGCCAAGTCAGTGGCTGCTGCAGATGCTGCATTTAGCAGGAATTGAC..................................................................................................................................................................................GGTGCGTTTACTTCGGTGGTCAAATCACTAAGAACTCGGTGTATGGAGTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324187" ref_strand="+" ref_description="SGN-E324187 [cTOC-4-D8]">
      <seq>tggctttgctacctgcactccgccatctcttcacccacttgcgttcaccagccacatccatagccttgtctatctgcccaagattgtcaatcccaattcacacaacactctcttctctcttccctctttcttcttcttcttcttctcaacctactgctaagcatcatgctatttctaaagagagtactctggtgctgaaacaagacgagaggttatcagtgtctggtacagtgagcgctcttgactcagccgttaatactagcaccattgctgctattgtcacttctttgggtggtccagcagctgcagttggaattattcggttatctggtccttctgcagtgcctatagttggtcgtgtatttcatcccaaggtgaaaaagaagaaaaggagttcttcggagtggagaccgagtagtcatgttgtagagtacggttttgtttccgactctcatgggaatgtgattgatgaagttctggtggttcctatgctggctccaaagtcttacactagagaagatgtgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="3964" stop="1769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3664" g_stop="3485" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3484" i_stop="2856" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2855" g_stop="2563" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="473" r_length="293" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2562" i_stop="2124" i_length="439">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2123" g_stop="2069" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="528" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E324187" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3664" e_stop="3485"/>
          <exon e_start="2855" e_stop="2563"/>
          <exon e_start="2123" e_stop="2069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTGCTACCTGCACTCCGCCATCTCTTCACCCACTTGCGTTCACCAGCCACATCCATAGCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAGGTAACTCCTTTCATCTTCCTGCATACCCATTTTATAATGCTAATGTTTCAATCTATTCATTGAATATAGTTATCTAGTGTTGAAAGAATTGTTTTTTAGTGATAAAGATTCAATCTTTTTATTGCATATACTACTCCTGTGCTGAAATAATTGAATTTAATGCTAATCTTGTTATTGCAGAAAATGCTGTGGTATTGAAAAAATTGATTTTTGTTGATAAAGATTCAATCTTTTAATTGCAGAGAATTATGTGGTTCTACAAGAATTGGGTTTTAATGCTGAAGTTTCAATTTTTCTGTTGCAAAGAATACTATGGTGCTGAAAGAATTGTTTTTGACTTTTAAAGATCCAATCTTTTTATTGCAGAGAGTACTCTGGTACTGAAAAAAAATTGGATTTTGGTGCTGAAATTTCAATCTTTCTGTTGCAGAGAATACTATGGAGCTGAAAGAATTGTTTTTTACTGATAATATTTTGATCTTTTTATAGAAGAGAATAATGTGGTTGTAAAAGAATTAGGTTTAATGCTTAAGTTTCAATTTTTCTTTTATTGTATAGATTCTACTCTGGTGCTGAAAAATTGATTTGAATGCTTAAGTTTCAATGTTTTTTATTTATTTTTATTGCAGAGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACCCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAGGTATAATTTGAAACTCTAGATTTTTCCTTCTGGTTGGTGCATTTATTCTTTAGATTTGACATGTGAATTACACTACATTGATGATTTTAAGAGTTTGGTGCTGTTGTTGCTTCATATCTGAATTAAGCCTTTGCGACGTCTTCTTATTATATCTAGTACTTTTATCTGCTCTTATTAAGTTCATACCTGTGGGGAATTGGTTCTTCATTTAATTCTATTATAACCCCGTAGATAAGGTGAGGTAAAGGTGTCTATAGAATGGAAACGAGAGTCTGTTTCAGGACATTTCTAGTGGCTTCTGCCTTTACCTTAAAGAAATAAAGAGACGCTAAAATAATGAATATGTTGGAAGTCATTGTTAATAGTTTCAATAGTTTTATTCTTCTTCTTCTTCTTCTATCTCTCTCTCTCTAAATTCCTTTTTCTTTTTCTTGCTTAGGTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAG</genome_strand>
        <mrna_strand>TGGCTTTGCTACCTGCACTCCGCCATCTCTTCACCCACTTGCGTTCACCAGCCACATCCATAGCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACTCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331295" ref_strand="+" ref_description="SGN-E331295 [cTOD-6-F8]">
      <seq>aacaaacaaacaaaaaaacataatgggtacactagccaatgagagtttcagcattgagctacagcagcttgatgcagctactgatactgcaaggaatcagagaactcaatggctccttgcttctcctaatcctccaaattttttccatcaactcattaattctgttaaaaaaaatgttgacagaaccacaaaacgatcaacaaatggtgttttcttttcattcttgaaaggattgtttccaatccttagctggggaagaaattataaatgtacaatgtttaagcatgacataatggctggcttaactcttgctagtctctgcataccacagagtattggatatgctaatcttgcgaaacttgatcctcaatatggcttatacgctagtgttgttccaccacttatatatgctgtgatgggaagttcgcgagagattgctattggccctgttgctgtagtgtcacttcttatttctgcactgatttccaagattatagaccctgctgtcgatccaatcgcttacaggaatcttggtttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="25540" stop="26870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25840" g_stop="26170" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26171" i_stop="26286" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26287" g_stop="26335" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="380" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26336" i_stop="26409" i_length="74">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26410" g_stop="26570" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="541" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E331295" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25840" e_stop="26170"/>
          <exon e_start="26287" e_stop="26335"/>
          <exon e_start="26410" e_stop="26570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAACAAAAAAACAGAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAGGTAATAATAATAAAAAGAAAAGAATCGTTTTTTATTAGTCGTGTAAAGGTCGTTCAAACCTTTACACGAGTAATATAGGTTCCTAACTGTAATTGGAATGTTATATCTTTATGCAGAGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTATGTAAGTTGAAAAAAATACAGAGTTTGGTTCGATTCTTGTAGATATAGTTTATGATATTTTTCTTATTGTTGTAGACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGTTTTCACT</genome_strand>
        <mrna_strand>AACAAACAAACAAAAAAACATAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAG....................................................................................................................AGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTAT..........................................................................ACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGGTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316013" ref_strand="+" ref_description="SGN-E316013 [cTOA-23-A20]">
      <seq>aacaaaaaaacagaatgggtacactagccaatgagagtttcagcattgagctacagcagcttgatgcagctactgatactgcaaggaatcagagaactcaatggctccttgcttctcctaatcctccaaattttttccatcaactcattaattctgttaaaaaaaatgttgacagaaccacaaaacgatcaacaaatggtgttttcttttcattcttgaaaggattgtttccaatccttagctggggaagaaattataaatgtacaatgtttaagcatgacataatggctggcttaactcttgctagtctctgcataccacagagtattggatatgctaatcttgcgaaacttgatcctcaatatggcttatacgctagtgttgttccaccacttatatatgctgtgatgggaagttcgcgagagattgctattggccctgttgctgtagtgtcacttcttatttctgcactgatttccaagattatagaccctgctgtcgatccaatcgcttacaggaatcttgttttcactgccacattcttcactggtgcatttcaggctgtttttggactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="25548" stop="26913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25848" g_stop="26170" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26171" i_stop="26286" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26287" g_stop="26335" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="372" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26336" i_stop="26409" i_length="74">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26410" g_stop="26613" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="576" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E316013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25848" e_stop="26170"/>
          <exon e_start="26287" e_stop="26335"/>
          <exon e_start="26410" e_stop="26613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAAACAGAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAGGTAATAATAATAAAAAGAAAAGAATCGTTTTTTATTAGTCGTGTAAAGGTCGTTCAAACCTTTACACGAGTAATATAGGTTCCTAACTGTAATTGGAATGTTATATCTTTATGCAGAGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTATGTAAGTTGAAAAAAATACAGAGTTTGGTTCGATTCTTGTAGATATAGTTTATGATATTTTTCTTATTGTTGTAGACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGTTTTCACTGCCACATTCTTCACTGGTGCATTTCAGGCTGTTTTTGGACTAT</genome_strand>
        <mrna_strand>AACAAAAAAACAGAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAG....................................................................................................................AGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTAT..........................................................................ACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGTTTTCACTGCCACATTCTTCACTGGTGCATTTCAGGCTGTTTTTGGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689235" ref_strand="+" ref_description="SGN-E689235 [t3_tus_80_L01]">
      <seq>cttgatggtaacaaagaaatggtagcaattggatgtatgaaccttgtgggatctttaacttcttgctacacagcaactggttcattttcgagaacagcagtgaactacagtgcaggatgtgaaactgttgtgtcaaacatagttatggcaataacagttctgatatcattagagttgttgacaaagctattatactatactccattggcaatactagcatcaattatcatatcagctttaccaggattaattgacattactgaagcatttcacatttggaaagttgacaagacagatttcatcatttgcattgctgctttcttgggagtactctttggctccgtcgaaatcggtcttataatagcggttggaatttcatttggtaaaataatacttggtaccattagaccaagtgtagaactacaaggtagactacctggaacagacactttttgtgacataactcaatttccagtggctactgaaactcaaggagttttggttattagagtgaacaatgcttcactatgctttgcaaatgctaatttcataagaggaaggatattgagcatagtgacaaatagaagtgaagagcagtccaagggaaaacttcgtatcttagtgctagatatgtcaagtgtaatgagcattgatacatcaggaattgttgcattggaggagttgaacagagaattggtatcacaaggcatacaattagctatagcaaatccnaggtgggaagtaatgaacaagttgaaggtagcaaaatttgtagatgaacttggaaataggtggattttcctcagtgttggagatgctgtaaatgcctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="27172" stop="29765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27472" g_stop="27550" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27551" i_stop="27640" i_length="90">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27641" g_stop="27927" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="366" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27928" i_stop="28556" i_length="629">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28557" g_stop="28750" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="560" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28751" i_stop="28843" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28844" g_stop="28920" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="637" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28921" i_stop="29052" i_length="132">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29053" g_stop="29129" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="714" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29130" i_stop="29346" i_length="217">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29347" g_stop="29465" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="833" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E689235" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27472" e_stop="27550"/>
          <exon e_start="27641" e_stop="27927"/>
          <exon e_start="28557" e_stop="28750"/>
          <exon e_start="28844" e_stop="28920"/>
          <exon e_start="29053" e_stop="29129"/>
          <exon e_start="29347" e_stop="29465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTGGTAAACTTTCAAACTAAAGTAAACTTTTTTTTAATTTTTTTTTTAAATGTGATGGTCATATACTTCAATATGTCATGCGAATCGTTGTAGGTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCGGTAACTATATTGTCTCTATTTTATATATTTATATACAAAAATTGTGAACTTAGCTACTGAATTCACGTGAAAACATATCTGAACTTCAACATTGTCCCCGGCCTTTGGTGTTAACTACTAAGTACTAGAGATCTCAAATTCAATTCCAGAGTAGAATTTATTGGCTAATTATATGAATTTTATATAAAAGACAAAAAAAAATTGGGAATTTAATGTTGATGTGAAATATCAAATAATTAAAAAGACGTCATTTGTGGGTTCCATTTGTTGGATTCTTTTACTAGTACTAGTAAACATTAATGCATGGAGAGTAGGTTATGATGCTTTTTCTTTTGTTCCAAAAATAATTGACTCATTTCCACTCTTTGATCATCTGTCATGTTCTTTTTTCAACTTTTAGTAACCATTTGTTCACAAAACAACAACTTGTTGTCTATGCTTTATGGATAAGGTACAGTGTACTATTCATCTGATTCCACATATAAATATCTCAAATTTAACCTCTTATAATAATAATAATAGTGTTCAGATCAACTTGCATGCACAAAACAAATCAGTGTACGTGTTTGATTAATATTTGTTACTTAATTTTCATCACTTTAATAACCGCGACTAATACTTAATTGCAGGTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAGGTACATTTTTAAATTTTACATAGAGGAATATGAAATTTATTAAATAATTGTTTATAATTTCCTTTTTTCTTTTATTTTAATTTTTCCAATTAGGATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAAGTAAGGTTCTTTAATATCTGTTTGGACAACTACAAAAATAATCAAAAATATATTAGAAAAGTCGCGCTAAATTCTAGAAATCGCGATACTATAAATAGGCCAAAATTTTACATTGATGAATTGTTATTTCAGGTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGGAGGAGTTGAACAGAGAATTGGTATCACAAGGCATACAAGTTAGTTTCTCTCTAATAATGTGACCAAAAAAATGTCAATAAATGTTCAACATAATTTTTTTTAGTCCATCTAAAATGAATCTCATAATTTTTTATTTATAGTTTTAATCAGGATGAGATGATTTATAGTCATACAGATGCCTATGACTTGTTATAGATCATGAGTCACATAAATTATAATTCGTTATATTGTACTCAATTTTTTTTATTTTTGCAGTTAGCTATAGCAAATCCAAGGTGGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGGTGGATTTTCCTCAGTGTTGGAGATGCTGTAGATGCCTGTTT</genome_strand>
        <mrna_strand>CTTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTG..........................................................................................GTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAG.............................................................................................GATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAA....................................................................................................................................GTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGGAGGAGTTGAACAGAGAATTGGTATCACAAGGCATACAA.........................................................................................................................................................................................................................TTAGCTATAGCAAATCCNAGGTGGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGGTGGATTTTCCTCAGTGTTGGAGATGCTGTAAATGCCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325864" ref_strand="+" ref_description="SGN-E325864 [cTOC-12-J18]">
      <seq>ttgatggtaacaaagaaatggtagcaattggatgtatgaaccttgtgggatctttaacttcttgctacacagcaactggttcattttcgagaacagcagtgaactacagtgcaggatgtgaaactgttgtgtcaaacatagttatggcaataacagttctgatatcattagagttgttgacaaagctattatactatactccattggcaatactagcatcaattatcatatcagctttaccaggattaattgacattactgaagcatttcacatttggaaagttgacaagacagatttcatcatttgcattgctgctttcttgggagtactctttggctccgtcgaaatcggtcttataatagcggttggaatttcatttggtaaaataatacttggtaccattagaccaagtgtagaactacaaggtagactacctggaacagacactttttgtgacataactcaatttccagtggctactgaaactcaaggagttttggttattagagtgaacaatgcttcactatgctttgcaaatgctaatttcataagaagaaagatattgagcatagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="27173" stop="29160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27473" g_stop="27550" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27551" i_stop="27640" i_length="90">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27641" g_stop="27927" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="365" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27928" i_stop="28556" i_length="629">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28557" g_stop="28750" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="559" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28751" i_stop="28843" i_length="93">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28844" g_stop="28860" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="576" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E325864" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27473" e_stop="27550"/>
          <exon e_start="27641" e_stop="27927"/>
          <exon e_start="28557" e_stop="28750"/>
          <exon e_start="28844" e_stop="28860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTGGTAAACTTTCAAACTAAAGTAAACTTTTTTTTAATTTTTTTTTTAAATGTGATGGTCATATACTTCAATATGTCATGCGAATCGTTGTAGGTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCGGTAACTATATTGTCTCTATTTTATATATTTATATACAAAAATTGTGAACTTAGCTACTGAATTCACGTGAAAACATATCTGAACTTCAACATTGTCCCCGGCCTTTGGTGTTAACTACTAAGTACTAGAGATCTCAAATTCAATTCCAGAGTAGAATTTATTGGCTAATTATATGAATTTTATATAAAAGACAAAAAAAAATTGGGAATTTAATGTTGATGTGAAATATCAAATAATTAAAAAGACGTCATTTGTGGGTTCCATTTGTTGGATTCTTTTACTAGTACTAGTAAACATTAATGCATGGAGAGTAGGTTATGATGCTTTTTCTTTTGTTCCAAAAATAATTGACTCATTTCCACTCTTTGATCATCTGTCATGTTCTTTTTTCAACTTTTAGTAACCATTTGTTCACAAAACAACAACTTGTTGTCTATGCTTTATGGATAAGGTACAGTGTACTATTCATCTGATTCCACATATAAATATCTCAAATTTAACCTCTTATAATAATAATAATAGTGTTCAGATCAACTTGCATGCACAAAACAAATCAGTGTACGTGTTTGATTAATATTTGTTACTTAATTTTCATCACTTTAATAACCGCGACTAATACTTAATTGCAGGTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAGGTACATTTTTAAATTTTACATAGAGGAATATGAAATTTATTAAATAATTGTTTATAATTTCCTTTTTTCTTTTATTTTAATTTTTCCAATTAGGATATTGAGCATAGTGA</genome_strand>
        <mrna_strand>TTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTG..........................................................................................GTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAAGAAA.............................................................................................GATATTGAGCATAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346516" ref_strand="+" ref_description="SGN-E346516 [cTOF-28-E13]">
      <seq>ctatactccattggcaatactagcatcaattatcatatcagctttaccaggattaattgacattactgaagcatttcacatttggaaagttgacaagacagatttcatcatttgcattgctgctttcttgggagtactctttggctccgtcgaaatcggtcttataatagcggttggaatttcatttggtaaaataatacttggtaccattagaccaagtgtagaactacaaggtagactacctggaacagacactttttgtgacataactcaatttccagtggctactgaaactcaaggagttttggttattagagtgaacaatgcttcactatgctttgcaaatgctaatttcataagaggaaggatattgagcatagtgacaaatagaagtgaagagcagtccaagggaaaacttcgtatcttagtgctagatatgtcaagtgtaatgagcattgatacatcaggaattgttgcattggaaggagttgaacagagaaattggtatcacaaggcatacaattagctatagcaaatccaaggtggggaagtaatgaacaagttgaaggtagcaaaatttgtagatgaacttggaaatagnttggattttncttcagtgttggagatgctgtagatgcctgtttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="27456" stop="29770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27756" g_stop="27927" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27928" i_stop="28556" i_length="629">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28557" g_stop="28750" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="366" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28751" i_stop="28843" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28844" g_stop="28920" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="443" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28921" i_stop="29052" i_length="132">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29053" g_stop="29129" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="522" r_length="79" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29130" i_stop="29346" i_length="217">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29347" g_stop="29470" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="649" r_length="127" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E346516" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27756" e_stop="27927"/>
          <exon e_start="28557" e_stop="28750"/>
          <exon e_start="28844" e_stop="28920"/>
          <exon e_start="29053" e_stop="29129"/>
          <exon e_start="29347" e_stop="29470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCGGTAACTATATTGTCTCTATTTTATATATTTATATACAAAAATTGTGAACTTAGCTACTGAATTCACGTGAAAACATATCTGAACTTCAACATTGTCCCCGGCCTTTGGTGTTAACTACTAAGTACTAGAGATCTCAAATTCAATTCCAGAGTAGAATTTATTGGCTAATTATATGAATTTTATATAAAAGACAAAAAAAAATTGGGAATTTAATGTTGATGTGAAATATCAAATAATTAAAAAGACGTCATTTGTGGGTTCCATTTGTTGGATTCTTTTACTAGTACTAGTAAACATTAATGCATGGAGAGTAGGTTATGATGCTTTTTCTTTTGTTCCAAAAATAATTGACTCATTTCCACTCTTTGATCATCTGTCATGTTCTTTTTTCAACTTTTAGTAACCATTTGTTCACAAAACAACAACTTGTTGTCTATGCTTTATGGATAAGGTACAGTGTACTATTCATCTGATTCCACATATAAATATCTCAAATTTAACCTCTTATAATAATAATAATAGTGTTCAGATCAACTTGCATGCACAAAACAAATCAGTGTACGTGTTTGATTAATATTTGTTACTTAATTTTCATCACTTTAATAACCGCGACTAATACTTAATTGCAGGTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAGGTACATTTTTAAATTTTACATAGAGGAATATGAAATTTATTAAATAATTGTTTATAATTTCCTTTTTTCTTTTATTTTAATTTTTCCAATTAGGATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAAGTAAGGTTCTTTAATATCTGTTTGGACAACTACAAAAATAATCAAAAATATATTAGAAAAGTCGCGCTAAATTCTAGAAATCGCGATACTATAAATAGGCCAAAATTTTACATTGATGAATTGTTATTTCAGGTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGG-AGGAGTTGAACAGAG-AATTGGTATCACAAGGCATACAAGTTAGTTTCTCTCTAATAATGTGACCAAAAAAATGTCAATAAATGTTCAACATAATTTTTTTTAGTCCATCTAAAATGAATCTCATAATTTTTTATTTATAGTTTTAATCAGGATGAGATGATTTATAGTCATACAGATGCCTATGACTTGTTATAGATCATGAGTCACATAAATTATAATTCGTTATATTGTACTCAATTTTTTTTATTTTTGCAGTTAGCTATAGCAAATCCAAGGT-GGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGG-TGGATTTTCC-TCAGTGTTGGAGATGCTGTAGATGCCTGTTTGAATG</genome_strand>
        <mrna_strand>CTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAG.............................................................................................GATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAA....................................................................................................................................GTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGGAAGGAGTTGAACAGAGAAATTGGTATCACAAGGCATACAA.........................................................................................................................................................................................................................TTAGCTATAGCAAATCCAAGGTGGGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGNTTGGATTTTNCTTCAGTGTTGGAGATGCTGTAGATGCCTGTTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346677" ref_strand="+" ref_description="SGN-E346677 [cTOF-28-E14]">
      <seq>ctatactccattggcaatactagcatcaattatcatatcagctttaccaggattaattgacattactgaagcatttcacatttggaaagttgacaagacagatttcatcatttgcattgctgctttcttgggagtactctttggctccgtcgaaatcggtcttataatagcggttggaatttcatttggtaaaataatacttggtaccattagaccaagtgtagaactacaaggtagactacctggaacagacactttttgtgacataactcaatttccagtggctactgaaactcaaggagttttggttattagagtgaacaatgcttcactatgctttgcaaatgctaatttcataagaggaaggatattgagcatagtgacaaatagaagtgaagagcagtccaagggaaaacttcgtatcttagtgctagatatgtcaagtgtaatgagcattgatacatcaggaattgttgcattggaaggagttgaacagagaaattggtatcacaaggcatacaattagctatagcaaatccaaggtggggaagtaatgaacaagtngaaggtagcaaaatttgtagatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="27456" stop="29714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27756" g_stop="27927" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27928" i_stop="28556" i_length="629">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28557" g_stop="28750" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="366" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28751" i_stop="28843" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28844" g_stop="28920" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="443" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28921" i_stop="29052" i_length="132">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29053" g_stop="29129" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="522" r_length="79" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29130" i_stop="29346" i_length="217">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29347" g_stop="29414" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="591" r_length="69" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E346677" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27756" e_stop="27927"/>
          <exon e_start="28557" e_stop="28750"/>
          <exon e_start="28844" e_stop="28920"/>
          <exon e_start="29053" e_stop="29129"/>
          <exon e_start="29347" e_stop="29414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCGGTAACTATATTGTCTCTATTTTATATATTTATATACAAAAATTGTGAACTTAGCTACTGAATTCACGTGAAAACATATCTGAACTTCAACATTGTCCCCGGCCTTTGGTGTTAACTACTAAGTACTAGAGATCTCAAATTCAATTCCAGAGTAGAATTTATTGGCTAATTATATGAATTTTATATAAAAGACAAAAAAAAATTGGGAATTTAATGTTGATGTGAAATATCAAATAATTAAAAAGACGTCATTTGTGGGTTCCATTTGTTGGATTCTTTTACTAGTACTAGTAAACATTAATGCATGGAGAGTAGGTTATGATGCTTTTTCTTTTGTTCCAAAAATAATTGACTCATTTCCACTCTTTGATCATCTGTCATGTTCTTTTTTCAACTTTTAGTAACCATTTGTTCACAAAACAACAACTTGTTGTCTATGCTTTATGGATAAGGTACAGTGTACTATTCATCTGATTCCACATATAAATATCTCAAATTTAACCTCTTATAATAATAATAATAGTGTTCAGATCAACTTGCATGCACAAAACAAATCAGTGTACGTGTTTGATTAATATTTGTTACTTAATTTTCATCACTTTAATAACCGCGACTAATACTTAATTGCAGGTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAGGTACATTTTTAAATTTTACATAGAGGAATATGAAATTTATTAAATAATTGTTTATAATTTCCTTTTTTCTTTTATTTTAATTTTTCCAATTAGGATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAAGTAAGGTTCTTTAATATCTGTTTGGACAACTACAAAAATAATCAAAAATATATTAGAAAAGTCGCGCTAAATTCTAGAAATCGCGATACTATAAATAGGCCAAAATTTTACATTGATGAATTGTTATTTCAGGTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGG-AGGAGTTGAACAGAG-AATTGGTATCACAAGGCATACAAGTTAGTTTCTCTCTAATAATGTGACCAAAAAAATGTCAATAAATGTTCAACATAATTTTTTTTAGTCCATCTAAAATGAATCTCATAATTTTTTATTTATAGTTTTAATCAGGATGAGATGATTTATAGTCATACAGATGCCTATGACTTGTTATAGATCATGAGTCACATAAATTATAATTCGTTATATTGTACTCAATTTTTTTTATTTTTGCAGTTAGCTATAGCAAATCCAAGGT-GGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACT</genome_strand>
        <mrna_strand>CTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAG.............................................................................................GATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAA....................................................................................................................................GTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGGAAGGAGTTGAACAGAGAAATTGGTATCACAAGGCATACAA.........................................................................................................................................................................................................................TTAGCTATAGCAAATCCAAGGTGGGGAAGTAATGAACAAGTNGAAGGTAGCAAAATTTGTAGATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254096" ref_strand="+" ref_description="SGN-E254096 [cLEG-34-L21]">
      <seq>caaagacgaagttcatttgtatctttggatgaaaattacaatacctatgttgttgaagttcaacattattgtgttgggggtacctgtccaaagcaaagtggatttcaagccttagttgatagtgggtcttccttcacttttctcccttctgaaatctttacaaaagtagtaactgagtttgaagagcaaatgaacgttacgaggttagctatagaagattttccttgctgctataaggctaggtaaagtctgctctcgtgaaaatgctgtttttttgttttatttacttgtagattattctccatatgcttttttatgcagttcacaaggtttaccgaacattcctagcatgaaacttttgttagctgctaatcagagctttgtaattcagaaccccatgtttaccatctccagtagtcagggtgataacttttattgtgtgggtctcctacctattgaaggaatgattggtattattggacagaactttatggagggatatcgattggtgtttgattgggaaaacatgaagttgggttggtctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="87714" stop="84841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87414" g_stop="87377" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87376" i_stop="87274" i_length="103">
            <donor d_prob="0.691" d_score="0.00"/>
            <acceptor a_prob="0.602" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87273" g_stop="87135" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="177" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87134" i_stop="86994" i_length="141">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86993" g_stop="86750" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="421" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86749" i_stop="85365" i_length="1385">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85364" g_stop="85304" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="482" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85303" i_stop="85206" i_length="98">
            <donor d_prob="0.327" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85205" g_stop="85141" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="547" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E254096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87414" e_stop="87377"/>
          <exon e_start="87273" e_stop="87135"/>
          <exon e_start="86993" e_stop="86750"/>
          <exon e_start="85364" e_stop="85304"/>
          <exon e_start="85205" e_stop="85141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTAGTATGTATCTCCTCTATTCTTTTGTGCTATGTTTAGTTTGATAGGCAATTTAAACAACTTCATTTGCACATTATCTTATGTTCCTACTCGTAATTTTTACCAGCAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAGGTACAAATATCATTTTTCTCTTGTCCTGCTATTCCCCTTTTCACTCTCTTAATTTCACAAGTTACTCTTCAGCTTAGTTTTAGAATGCACATGCAGTTTTTTTGCGGTACCTGAGCTATTTCCTATTTTTTTCTCTTCTAGTTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAGGTAAAGTCTGCTCTCGTGAAAATGCTGTTTTTTTGTTTTATTTACTTGTAGATTATTCTCCATATGCTTTTTTATGCAGTTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCTAATCAGAGCTTTGTAATTCAGAACCCCATGTTTACCATCTCCAGTAGTCAGGTCAGTATTTGAATCTCTTTGTTTGCCATCATCCTGCAAATTAATCTTTTTTGTTGAGGCATAGAAGATTTAGCTGTAAGATTTTTTTCTTTGAATGAGCTGGTAACATGCGATGCTTATGCATGCAAACTCACTTGCATTTATATGAAGATGAAGTTAGTGCACCCAAAATGCAGAAACTGACTCAGGTCTTAATCTGGAATTAATACTATCTCTACCTTTTCTGTCAATTTAAGTACTTGCTATTTTTCTTTTTCAGGAAAAAAATTACTCCCTACTTTTCATTTTGTGTCTGGTAGCTAACTGGCTTTAGAGCTTTTAATAGTTGTTAATTTCATTGTTACTATTATTTTGGATTTGGAATTTCTCTAAAATCTAAGTTCTTGTGAGATTGAATCCAGCTCTTCACCAAGAAACTTTTGGTAGAGATGCTTGAAGCATATCACTTAAGGTGAACGAGAGTCACTGCAAGAAAGGATCCAAAGTTTGCTATGAGTGATGTTGAACAGATAGGACATGGGGCTAATTGGTGCCATGACACCTAAAGCTTAAGAACATTTCTGCTGGTACTTGGGAAATTTTTGATAGTGTAAACTAGCTCTATAAGATTTTGTATGTGGCTTCTGTGATAGGTTTACTGTAGAACTGCAATCCTTCCAAAAATTTCTTCTGTGTCCATCCCAGCTTGTTAGTTCTTATCATCTCTCCTATGAAGTTAGTTCTCTAAAAATTCTACTCTCCCTCTATCAATTTGTTGTCTTGCTTTCCTTTTTAGTGTGTTTCAAGAAGAATGCCTCTTTCCTAATTTGGCAACTCAGTAATGAGTAACTTCAACATCCTACCTGGCGTGTTTAAGGCCAACAGAATGAAGTGAATTTTGATACAATATACATATTTTTAGTTTAAGACCACAAGATTTAATAGTCATCTTTACATAAACTCCATGCCAAGTCAAACTAAGACAAACAAATAGAAACAGAGAGAGTATTAGTTTTGCCAACAATAGAAAATATATTTATTAGTTTTGTCATAGTGGCTACTGGTTACAAAGTCAGTTTGTTTGGTCCCATTCATTAGTAATCAAAGTTGTAGCACGTTGTTTTGCAAACTTCTGGAGTAAAATGCTCTCTATGTGCAAAGATGAATGACGGATAAATGCCCTTGTACTTGGTCTATGTTCATCTTTGTTTTACTGCTGTGAATAAACATGTTACCCTGTTGCCTTTGCATGCTTAAACAATATCTTTTCAATTCCTTTATGACAAAGCAAGTATGGTTTTCTCCATAAGTTTTCTAGTGTATGATCCCAAGTTCACTGTGCCCTCTCATGGACTTTGTTTTGCAGACTTATAGTGATGGTTTCTTATTGGAGGTATTTTGTGCAGGGTGATAACTTTTATTGTGTGGGTCTCCTACCTATTGAAGGAATGATTGGTATTATTGGACGTAAGTTCATATGTAATTTTGAAGTAATGTAAGGCGCACATATATGCATGTTGACTGTTGGATGTTCCATGCAATTTCATTTGAATTATGCTGTGCAGAGAACTTTATGGAGGGATATCGATTGGTGTTTGATTGGGAAAACATGAAGTTGGGTTGGTCTCGC</genome_strand>
        <mrna_strand>CAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTA.......................................................................................................CAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAG.............................................................................................................................................TTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAGGTAAAGTCTGCTCTCGTGAAAATGCTGTTTTTTTGTTTTATTTACTTGTAGATTATTCTCCATATGCTTTTTTATGCAGTTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCTAATCAGAGCTTTGTAATTCAGAACCCCATGTTTACCATCTCCAGTAGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAACTTTTATTGTGTGGGTCTCCTACCTATTGAAGGAATGATTGGTATTATTGGAC..................................................................................................AGAACTTTATGGAGGGATATCGATTGGTGTTTGATTGGGAAAACATGAAGTTGGGTTGGTCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200161" ref_strand="+" ref_description="SGN-E200161 [cLEB-7-B3]">
      <seq>gcacgagtggatttgttccacgctcattctcattgtgttttggaaagagcaattctggcacaattttctttggtgataaagggcctgaaaatcaaagacgaagttcatttgtatctttggatgaaaattacaatacctatgttgttgaagttcaacattattgtgttgggggtacctgtccaaagcaaagtggatttcaagccttagttgatagtgggtcttccttcacttttctcccttctgaaatctttacaaaagtagtaactgagtttgaagagcaaatgaacgttacgaggttagctatagaagattttccttgctgctataaggctagttcacaaggtttaccgaacattcctagcatgaaacttttgttagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="87807" stop="86501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87507" g_stop="87377" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87376" i_stop="87274" i_length="103">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.602" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87273" g_stop="87135" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="269" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87134" i_stop="86994" i_length="141">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86993" g_stop="86929" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="334" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86928" i_stop="86850" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86801" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="383" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E200161" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87507" e_stop="87377"/>
          <exon e_start="87273" e_stop="87135"/>
          <exon e_start="86993" e_stop="86929"/>
          <exon e_start="86849" e_stop="86801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTAGTATGTATCTCCTCTATTCTTTTGTGCTATGTTTAGTTTGATAGGCAATTTAAACAACTTCATTTGCACATTATCTTATGTTCCTACTCGTAATTTTTACCAGCAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAGGTACAAATATCATTTTTCTCTTGTCCTGCTATTCCCCTTTTCACTCTCTTAATTTCACAAGTTACTCTTCAGCTTAGTTTTAGAATGCACATGCAGTTTTTTTGCGGTACCTGAGCTATTTCCTATTTTTTTCTCTTCTAGTTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAGGTAAAGTCTGCTCTCGTGAAAATGCTGTTTTTTTGTTTTATTTACTTGTAGATTATTCTCCATATGCTTTTTTATGCAGTTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCT</genome_strand>
        <mrna_strand>GC-ACGAGTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTA.......................................................................................................CAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAG.............................................................................................................................................TTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAG...............................................................................TTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725853" ref_strand="+" ref_description="SGN-E725853 [LA08CA11]">
      <seq>gcacgatcaagcagtagcaagtatctatcttgcagccatcaattatgtgaactgggtcctaactgccggagtccaaaggaacattgcccttatactgttaattactattctgaaaatacatcaacttcggggttccttttcgaggaccaattgcatttgacttcagttggtggacatgaacatcaaggttctgtgctagctcctattgttataggctgtggtagcaaacaaagtggcaattatttgagtggagctgctccagatggggtgatgggattagggccaggagaaatttctgttccaagtttgctggcgaagtctggatttgttccacgctcattctcattgtgttttggaaagagcaattctggcacaattttctttggtgataaagggcctgaaaatcaaagacgaagttcatttgcatctttggatgaaaattacaatacctatgttgttgaagttcaacattattgcgttgggggtacctgtccaaagcaaagtggatttcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="88434" stop="86901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88134" g_stop="87920" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87919" i_stop="87605" i_length="315">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87604" g_stop="87377" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="443" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87376" i_stop="87274" i_length="103">
            <donor d_prob="0.691" d_score="0.98"/>
            <acceptor a_prob="0.602" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87273" g_stop="87201" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="516" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E725853" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88134" e_stop="87920"/>
          <exon e_start="87604" e_stop="87377"/>
          <exon e_start="87273" e_stop="87201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACATCAACTTCGGGGTTCCTTTTCGAGGACCAATTGCATTTGACTTCAGTTGGTGGACATGAACATCAAGGTTCTGTGCTAGCTCCTATTGTTATAGGGTATGCTCTTTTCTTTTTCCAGTTCTGTATTATTGTAAGTAGGATCAGCTCAATGGTTTTGTGACAAAGAAGACTTGATAAACCTTCTTTATGAGTTCCATTATGAGCGAGTTTGTAGGTGCCTTAGCTGAATGTAGCAAAGGATTCTCCAATGAGAAGATTTGACCCTTGAACCTTGATACCTTTTATAGCTGTCTCAGTTGTGACTGTTTATTTTTGGCAATATGATTGTCGCCTAGCTGCTAGTTGTCATGTTACAGTATTTACCAGTTGGTTGATGAATGTGGTTTTCTTTTACGTAATAACTTATTGCAGCTGTGGTAGCAAACAAAGTGGCAATTATTTGAGTGGAGCTGCTCCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTAGTATGTATCTCCTCTATTCTTTTGTGCTATGTTTAGTTTGATAGGCAATTTAAACAACTTCATTTGCACATTATCTTATGTTCCTACTCGTAATTTTTACCAGCAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCC</genome_strand>
        <mrna_strand>GCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACATCAACTTCGGGGTTCCTTTTCGAGGACCAATTGCATTTGACTTCAGTTGGTGGACATGAACATCAAGGTTCTGTGCTAGCTCCTATTGTTATAGG...........................................................................................................................................................................................................................................................................................................................CTGTGGTAGCAAACAAAGTGGCAATTATTTGAGTGGAGCTGCTCCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGCATCTTTGGATGAAAATTA.......................................................................................................CAATACCTATGTTGTTGAAGTTCAACATTATTGCGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443305" ref_strand="+" ref_description="SGN-E443305 [cSTA-37-O1]">
      <seq>cggattctctgtttctcttcacacctaacaaaaatctctaccctctagggctttgcttcaatggcgatttctcttacggcagttgtactactgacgacggtggtgttgatgctttccgttgagcttgccgccggatatacattctcgtcgaggttgattcacgggttctcagatgaagcggtgtcgttgggcatctaaagggaagagtatgacgtggccgaaccgcgagagtgtggagcatatgaggttgctacttactaatgattggaagcgacagagactgaagcttggttcgcagaagcagcttttgtttccatctgaaggaagtgaaactcatttctatggaaatgacttgagttggctgcattatgtgtggattgacatagggacaccaaatgcatcatttcttgtcgccttggatgctggaagtgatctgctctggctcccttgcaattgtgtacaatgcgctccattgtcttcaagcaactactcaatgttggataaagatctgaatgagtatagcccagcacgatcaagcagtagcaagcatctatcttgcagccatcgactatgtgaactgggtcctaactgccggagtccaaaggaacactgcccttatactgttaactactattctgaaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="90852" stop="87715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90552" g_stop="90191" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90190" i_stop="89103" i_length="1088">
            <donor d_prob="0.612" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89102" g_stop="88964" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="499" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88963" i_stop="88162" i_length="802">
            <donor d_prob="0.742" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88161" g_stop="88015" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="646" r_length="147" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E443305" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90552" e_stop="90191"/>
          <exon e_start="89102" e_stop="88964"/>
          <exon e_start="88161" e_stop="88015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTCTCTATTTCTCTTCACACCTAACAAAAATCTCTACCTTCTAGGGCTTTGCTTCAATGGCGATTTCTCTTACGGCAGTTGTACTTCTGATGACGGCGGTATTGATGCTTTCCGTTGAGCTCGCCGCCGGTTATACATTCTCGTCGAGGTTGATTCACGGGTTCTCAGATGAAGCGTTGTCGTTTTGGGCATCTAAAGGGAAGAGTATGACGTGGCCGAAGCGCGAGAGTGTGGAGCATATGAGGTTGCTACTTAGTAATGATTGGAAACGACAGAGACTGAAGCTTGGTTCGCAGAAGCAGCTTTTGTTTCCATCTGAAGGAAGTGAAACTCATTTCTATGGAAATGAGTTGAGTTGGTTAGTAATACTATCAGTTTAAGAGATTTGTTAAAAATTGAAGCTTATAATGCGTCAATGCTGGAGTGGATTTTGCGTTTTTTTTTTTTGTTCTTTTGAATTTACTGTTGCATAAGGATTCAATTATTTTTGCTTATGATATACTAGGTTTAGTTGAAAAAGCATAAGATAAGTGACCTTATAGTTGCTGTCCTCCGGTGGGGCTTTGGGTACTCCCTCTTAGATATGTGAAAGAAATGAGCTACTAAAATCATCTAACTTTTTCCCCAACTGAGCTATGAGTTGAGTTGTTTTTGGAAGTTATAATCTATCCAACTTTTTCCCCAACTGAGCAATTGAATTGAATTGTTTTTGGAAGTTAAAATTTTGGTGTTGTTGCCTCCTTGAATAAATACTCTTCTCGATTGTCCATGGTTGAAATATTGGAATGATACAAGTTGATCACATGTTTTTCTCCATGCCGTTAAGTCATTTTCTTGACAAGTGTTAGAAATCTTGAAGAGATCTCCTTTCCCTTCTATTTTAGTAGTTGGCTCTTCTTATAGAAAATTAAAAAAATTCAAAGCCCTTATATGCTGGGAACAAGAAATAGTTATGTTGAAAAATAAGAATAAGAATGCTAAGCTCTTAAACAATATTAGTATATGAACACGGCAGTTCAACCTTTCTTGACAGGTCACCTTTTCGAACATGACCCTTACTATGGAGCTCGGGGATTTTAGATTCATGTGATGGTAGGCGATTATGTTCCCTTGTCACCCCTAGAGGGGAGGGGTGGAAGTATTGGAGAGTTTATCTTTCCATGACGAAATGGATGTTGTAGGAGAGGTTGGAAGGGGGAGTTTTGCTAATGATGGTTTGTTTGTGGGCAAAGGAAGGTCTTTTTCTTTCTCTTTCCATTGCTTGACTATGTTTGCTTTGCAAGGAAGGGAAGCTCAACCAAAAGTCCAAAACCTTTGACAGTTCAAATAGTGATAGTATTGAATATTGCATCAAAGATTTTGTTGAGATCTTTGCCGAGTAAAAGAATTCTTTTTTTCTCAAGTTCTAATAAAGTGTCTTGATTGTTCTGGATTACTATTATTCAGGCTGCATTATGTGTGGATTGACATAGGGACACCAAACACATCATTTCTTGTCGCCTTGGATGCTGGAAGTGATCTGCTCTGGCTCCCTTGCAATTGTGTACAATGTGCTCCATTGTCTTCAAGCTACTACTCAATGCTGGTAGGTTGCTCATGCTAATTGTTGCATTTGACTGTCTATTCTTACTGGTAATATTTGACCTTTCTTTTATTTCAAAACATAAGCTTGGTTTTGAAACTACTATCAACTTAAAGTAAGGGGGATGTCACCTTCACTTATCATGGGACATCTGGGACCACTAAAATATTATAGCATGCTTAATTTAATTTGATGTAGTTACTCTAAAGGAAGATATATAAACTCTTACAACATCAATTGTGCTCTGCAAATTTTTCTGTCCAAGTTATAGCTACTTGTGCAGTTGATGCTTTGTGCAACCTCAAAGACCAAGTTTCTGTGGTCTTAACTCTTCAAGTTACTGCTGTACCCTGATGTATTATCTTGGAACCTCAACATTTTCTTTCTGAAAGGCATTGATTTTCGTTTAAAGATATGCCAACTAGTAAAAGGTTTAATGCTTTTAGATTTTGTTGCATCTCGCAGCTTCCTCTGTAAAATCATTTTCTGTTTAAGTAAAACATTTTTATTTTAAGATATGTAGGATTCAAGGTGTAGAAAATTAGTTTTTTCCTACTTCAAATTCTTAGACTGATTTGGGCATGTACATTTTGGCTGGTTCATCTCTTACTGAACAGATAGAAAAACCATTTTTACTTTTCTTTTATAGATAATAAAACTCATTATTCAGTTGAGCTAATTAATCTCTTATCAGTGAAGCATTTGAAAGTGACTGTGTATCTCATCATGGGAACAGTTTTAGCTGTTAATTCTCCAATGATTGATTGGCAGGTGCTCCCTTGTATATGGGGCATCTATTATGCAGGATAAAGATCTGAATGAGTATAGCCCAGCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACA</genome_strand>
        <mrna_strand>CGGATTCTCTGTTTCTCTTCACACCTAACAAAAATCTCTACCCTCTAGGGCTTTGCTTCAATGGCGATTTCTCTTACGGCAGTTGTACTACTGACGACGGTGGTGTTGATGCTTTCCGTTGAGCTTGCCGCCGGATATACATTCTCGTCGAGGTTGATTCACGGGTTCTCAGATGAAGCGGTGTCG--TTGGGCATCTAAAGGGAAGAGTATGACGTGGCCGAACCGCGAGAGTGTGGAGCATATGAGGTTGCTACTTACTAATGATTGGAAGCGACAGAGACTGAAGCTTGGTTCGCAGAAGCAGCTTTTGTTTCCATCTGAAGGAAGTGAAACTCATTTCTATGGAAATGACTTGAGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATTATGTGTGGATTGACATAGGGACACCAAATGCATCATTTCTTGTCGCCTTGGATGCTGGAAGTGATCTGCTCTGGCTCCCTTGCAATTGTGTACAATGCGCTCCATTGTCTTCAAGCAACTACTCAATGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGATCTGAATGAGTATAGCCCAGCACGATCAAGCAGTAGCAAGCATCTATCTTGCAGCCATCGACTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACACTGCCCTTATACTGTTAACTACTATTCTGAAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455867" ref_strand="+" ref_description="SGN-E455867 [cSTS-27-H10]">
      <seq>gctattcagagcagtggcactgtacaggacattgaggatatgagaatttcatcttccgagggagtgcttgaggataaccttaggagacaagagaatgatgccgaggtaaccccagtaacatccaaggatgccttgggaaacaatagcattaagttggaggatgagggtctgaaactctcaggcatggatgctgagtatgataagtccaatccagacactcaggtatatgaggtcaaccctgatttagggtctcaagtaaaatctgacgcattttctactgatactttgcccattaatgaaaataatgatttaaatgataatttgaatgctgataatgttaaattagtaactgaagttgttaggcaagagaaggagtcatccagcaaagatctgtcagatgttggtagcatttatccattggatgatcagatgccacatgttggagaaactgttgatgacaaatcttcggaggtgaaatttagcatgaaaaaggccaatgcagatcaggtttctgttgctgttaccaaggtagagcatggtttagaaagtaacacattgaataatagtgagcaaaaagatgttcagtttgcaaaagctagaactttaggtgatgttatagaccctagtttgtcacccaagaaagttgaggtatctgctgaagataaacattgtattgctgcttccaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="95470" stop="96776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95770" g_stop="96476" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E455867" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95770" e_stop="96476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCAGAGCACTGACACTGTACATGATATTGAGGATATGAGAATTTCATCTTTTAAGGGAGTGCTTGAGGATAACCTTAGGAGACAAGAGAATGATGCCGAGGTAACCTCAGTAACATCCAAGGATGCCTTGGGAAACAATAACATTAAGTTGGAGGACGAGGGTCTGAAACTCTCAGACATGGATGTTGAGTATAACAAGTCCAATCCAGACACTTAGGTATATGAGGTCAACCCTGATTTAGGGTCCCTAGTAAAATCTGATGCATTTTCTACTGATACTTTGCCCATTGATGAACATAATGATCTGAATGATAATTTGAATGCTGATAATGTT-AATTAGTAACTGAAGTTGTTAGGCAAAAGATGGAGTCATCCAACAAAGACCTATCAGATGTTGGTAGCATTTATCCATTAGATGAACAGATGCCAAATGAGATGCAGGGTGATGTTGGAGAAATTGTTGATGACAAATCTTTGGAGGTGAAATTTAACATGAAAAAGGCCAATGCGTATCATGTTTCTGTTGCTGTTAACCAATGTAGAGCATGGTTTAGAAAGTAACGCATTGAATAATAGTGAGCAAAAAGATGTTCAGTTTGAAAAGGCTAGCACTTTAGGTGATGTTATCTAGCCTAGTTTGTCACCCAAGAAAGTTGAGGTATCTGCTGAAGATAAACATTGTATTGCTGCTTCTAGTGATGA</genome_strand>
        <mrna_strand>GCTATTCAGAGCAGTGGCACTGTACAGGACATTGAGGATATGAGAATTTCATCTTCCGAGGGAGTGCTTGAGGATAACCTTAGGAGACAAGAGAATGATGCCGAGGTAACCCCAGTAACATCCAAGGATGCCTTGGGAAACAATAGCATTAAGTTGGAGGATGAGGGTCTGAAACTCTCAGGCATGGATGCTGAGTATGATAAGTCCAATCCAGACACTCAGGTATATGAGGTCAACCCTGATTTAGGGTCTCAAGTAAAATCTGACGCATTTTCTACTGATACTTTGCCCATTAATGAAAATAATGATTTAAATGATAATTTGAATGCTGATAATGTTAAATTAGTAACTGAAGTTGTTAGGCAAGAGAAGGAGTCATCCAGCAAAGATCTGTCAGATGTTGGTAGCATTTATCCATTGGATGATCAGATGCC-------A--C------ATGTTGGAGAAACTGTTGATGACAAATCTTCGGAGGTGAAATTTAGCATGAAAAAGGCCAATGCAGATCAGGTTTCTGTTGCTGTT-ACCAAGGTAGAGCATGGTTTAGAAAGTAACACATTGAATAATAGTGAGCAAAAAGATGTTCAGTTTGCAAAAGCTAGAACTTTAGGTGATGTTATAGACCCTAGTTTGTCACCCAAGAAAGTTGAGGTATCTGCTGAAGATAAACATTGTATTGCTGCTTCCAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426018" ref_strand="+" ref_description="SGN-E426018 [STM-45-N8]">
      <seq>gctattcagagcagtggcactgtacaggacattgaggatatgagaatttcatcttccgagggagtgcttgaggataaccttaggagacaagagaatgatgccgaggtaaccccagtaacatccaaggatgccttgggaaacaatagcattaagttggaggatgagggtctgaaactctcaggcatggatgctgagtatgataagtccaatccagacactcaggtatatgaggtcaaccctgatttagggtctcaagtaaaatctgacgcattttctactgatactttgcccattaatgaaaataatgatttaaatgataatttgaatgctgataatgttaaattagtaactgaagttgttaggcaagagaaggagtcatccagcaaagatctgtcagatgttggtagcatttatccattggatgatcagatgccacatgttggagaaactgttgatgacaaatcttcggaggtgaaatttagcatgaaaaaggccaatgcagatcaggtttctgttgctgttaccaaggtagagcatggtttagaaagtaacacattgaataatagtgagcaaaaagatgttcagtttgcaaaagctagaactttaggtgatgttatagaccctagtttgtcacccaagaaagttgaggtatctgctgaagataaacattgtattgctgcttccaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="95470" stop="96775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95770" g_stop="96475" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E426018" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95770" e_stop="96475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCAGAGCACTGACACTGTACATGATATTGAGGATATGAGAATTTCATCTTTTAAGGGAGTGCTTGAGGATAACCTTAGGAGACAAGAGAATGATGCCGAGGTAACCTCAGTAACATCCAAGGATGCCTTGGGAAACAATAACATTAAGTTGGAGGACGAGGGTCTGAAACTCTCAGACATGGATGTTGAGTATAACAAGTCCAATCCAGACACTTAGGTATATGAGGTCAACCCTGATTTAGGGTCCCTAGTAAAATCTGATGCATTTTCTACTGATACTTTGCCCATTGATGAACATAATGATCTGAATGATAATTTGAATGCTGATAATGTT-AATTAGTAACTGAAGTTGTTAGGCAAAAGATGGAGTCATCCAACAAAGACCTATCAGATGTTGGTAGCATTTATCCATTAGATGAACAGATGCCAAATGAGATGCAGGGTGATGTTGGAGAAATTGTTGATGACAAATCTTTGGAGGTGAAATTTAACATGAAAAAGGCCAATGCGTATCATGTTTCTGTTGCTGTTAACCAATGTAGAGCATGGTTTAGAAAGTAACGCATTGAATAATAGTGAGCAAAAAGATGTTCAGTTTGAAAAGGCTAGCACTTTAGGTGATGTTATCTAGCCTAGTTTGTCACCCAAGAAAGTTGAGGTATCTGCTGAAGATAAACATTGTATTGCTGCTTCTAGTGATG</genome_strand>
        <mrna_strand>GCTATTCAGAGCAGTGGCACTGTACAGGACATTGAGGATATGAGAATTTCATCTTCCGAGGGAGTGCTTGAGGATAACCTTAGGAGACAAGAGAATGATGCCGAGGTAACCCCAGTAACATCCAAGGATGCCTTGGGAAACAATAGCATTAAGTTGGAGGATGAGGGTCTGAAACTCTCAGGCATGGATGCTGAGTATGATAAGTCCAATCCAGACACTCAGGTATATGAGGTCAACCCTGATTTAGGGTCTCAAGTAAAATCTGACGCATTTTCTACTGATACTTTGCCCATTAATGAAAATAATGATTTAAATGATAATTTGAATGCTGATAATGTTAAATTAGTAACTGAAGTTGTTAGGCAAGAGAAGGAGTCATCCAGCAAAGATCTGTCAGATGTTGGTAGCATTTATCCATTGGATGATCAGATGCC-------A--C------ATGTTGGAGAAACTGTTGATGACAAATCTTCGGAGGTGAAATTTAGCATGAAAAAGGCCAATGCAGATCAGGTTTCTGTTGCTGTT-ACCAAGGTAGAGCATGGTTTAGAAAGTAACACATTGAATAATAGTGAGCAAAAAGATGTTCAGTTTGCAAAAGCTAGAACTTTAGGTGATGTTATAGACCCTAGTTTGTCACCCAAGAAAGTTGAGGTATCTGCTGAAGATAAACATTGTATTGCTGCTTCCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567976" ref_strand="+" ref_description="SGN-E567976 [12187]">
      <seq>agagaagagaaagtttcaagggagatgggagtaaagagcctgcaaaaaggcagcggcaaatggaacactgagaatttgaatactgctgagccacaaaattcaaatattgcattatcagagaacttggttcagaccatccctgtcaagcctatctttggcaggaccgactctacagttagtgaggatgcacccaagggagcgccttgtaccaaagtcttccaaaacagccactaattctctcaaaattgagaacttcttgcggccctttacactgaaagctgtgcaagagctccttgcaagaactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaggaagccatagagacccgaaatgctgtttacaacctccaatggccaccaaaaggaggtcgtctcctgggttgcagattttgttgctccccgacaggtgcaaaccaagatagacggacgggagcctgctactccagcgacaaatcgcagtcctgcagtgcctccagcttcatcctctgttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="97181" stop="98905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97482" g_stop="97663" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="206" r_length="185" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97664" i_stop="97814" i_length="151">
            <donor d_prob="0.926" d_score="0.83"/>
            <acceptor a_prob="0.611" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97815" g_stop="97966" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="358" r_length="152" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97967" i_stop="98358" i_length="392">
            <donor d_prob="0.132" d_score="0.92"/>
            <acceptor a_prob="0.930" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98359" g_stop="98470" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="471" r_length="113" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98471" i_stop="98520" i_length="50">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98521" g_stop="98605" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="556" r_length="85" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E567976" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97482" e_stop="97663"/>
          <exon e_start="97815" e_stop="97966"/>
          <exon e_start="98359" e_stop="98470"/>
          <exon e_start="98521" e_stop="98605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGAGATTAAAGAGCCTGCAAAAAGACAG-TGCAAATGGAACACTGAGAATTTGTGTACTGCTAAGCCACAAAATTTAAGTATTGCATTATCAGAGAACTTGGTTCTGACCATCCCTGTCAAGCCTATCTTTGCCAGGACTGACTCTACAGTTAGTAAGGATGCACCCAA-GGAGC-CCTGGGTGAGTATTTGTTTTCTTGGTAAATTGCAGGAGTTTTACATGCAAGAATAGCGGCATAAGAATAATTTGTTTCTTTGTTCTGGTAATATTCCAGTACCAAAGTTTTCCACAACAGCCACTATTTGGTTACTTTGTTCTGGTAATATTTCAGTACCAAAGTCTTCTAGAACAACCACTAATTCTCTCAAAATTGAGAAATTCTTGCAACCCTTTACGCTAAAAGCTGTGCAAGAGCTCTTTGCAAGAACTGGTGAAGTCTACAGTTTTTGGATGGACCACATAAAGACCCATTGCTAAGTCACGGTAGAATCTTACTCTCTCCTGTTGTATTTGATGATCCTCTTAGACCATATGGTCATCAAATTTCTCTATTTGAAATTATACTATTTGCAAGGAAGCTATTAGCCTAGTTGGCTGGTTACTCTTAGAAAATGACAGGGTTGGGGACATCTGTCATGGGGTGGGCATGATTTGAAACCTTGATGTTGTGCCAGTTGGCCTAAGCCTCTCTGGTTAATTTGTCATAACGTAGCATGTTAATGTGCATCATTGGCCTTCTGAGGTGCATAGCTAAATGGCAATGGCCTTTGCATGCTTTGGCTTCTTGGCATGTTGCCAAATTTGTTAGAAAAGTGTCGTACTTTGCTTCCTTAGTGGCTCTAGTTACTAAATTAATGAATATTTTCTCTCAATAGTGTTCTTCTGTAGAGGAAGCCATAGAGAACCGAAATGCTATTTACAACCTCCAATGGCCACCAAAAGAAGGTCGTCTCCT-GGTTGCAAATTTTGTTGATCCCCAACAGGTGCCAGGCCAATGGCTGCTTCAGCGGCTGCAGTAGCTATAACAAAAATTGAGAAAACCAAAATAGACGGACGGGAGCCTGCTACTCCAGCGGCAAATCGCAGTACTGCAGTGCCTCCAACTTTATTCTCTGTTCAAGC</genome_strand>
        <mrna_strand>GAGATGGGAGTAAAGAGCCTGCAAAAAGGCAGCGGCAAATGGAACACTGAGAATTTGAATACTGCTGAGCCACAAAATTCAAATATTGCATTATCAGAGAACTTGGTTCAGACCATCCCTGTCAAGCCTATCTTTGGCAGGACCGACTCTACAGTTAGTGAGGATGCACCCAAGGGAGCGCCTTG.......................................................................................................................................................TACCAAAGTCTTCCAAAACAGCCACTAATTCTCTCAAAATTGAGAACTTCTTGCGGCCCTTTACACTGAAAGCTGTGCAAGAGCTCCTTGCAAGAACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG........................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAGGAAGCCATAGAGACCCGAAATGCTGTTTACAACCTCCAATGGCCACCAAAAGGAGGTCGTCTCCTGGGTTGCAGATTTTGTTGCTCCCCGACAGGTGC..................................................AAACCAAGATAGACGGACGGGAGCCTGCTACTCCAGCGACAAATCGCAGTCCTGCAGTGCCTCCAGCTTCATCCTCTGTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579157" ref_strand="+" ref_description="SGN-E579157 [86282]">
      <seq>atcatcaatgcatctcttcgattcttaaaattttacactaaagaaaacgaatggagataaatggcatttacagctacggcgcaattcaacgatgaatctggatgaagaaagaaggcagattctgcacattttgttatgtttcttcaacccaaagtaaaatacagtagagacttcaaccttgcagtaaccattaacaacgaaaatagaaaagaaagcaaggtcttaagtgagcctcaagactgcaacttctctgtgagggtaaattagcagttatcagcattacatcgcaacacctctccatataccatctatctaacaagtcctttgttcacttaaaagctctagttctcagcacctcctctactggcaagctttttagcaacttcttcatcagtcagcggtaaataatagatacggggagcggctttggtctttctgaagatgtcatccaaagtaataacaggggggtcatttttatcagcaacaggtggaaccaacttctcttttattggtggcgcagtaggaggagcaggtggtgcctggcgcgtgagtggatgttctgactcaacctgttgtttgcgaccctgctgccaagcaggtggagccaacctctcttttattggtagcgcagtaggaggagcaggtggtggctggcgccattagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="99610" stop="98362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99319" g_stop="98653" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E579157" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99319" e_stop="98653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCATCTGCATCCCTTCGATTTCTTAAAATTTTACAGTAAAGAAAACGCGTGGAGATAAATGACATTTATAGTTTTGGCGCAATTCAACTATGTATCTGGATGAAGAAAGAAGGCAGACTCTGCACATTTTGTTATGTTTTTTCAACCCAAAGCAAAATATAGTAGAGACTTCAACCTTGCAGTAACCATTAACAACGAAAATAGAAAAGAAAGCAAGGTCTT-AGTGAGCCTCAAGACTGCAACTTCTCTTTGAGGGCAAACTAGCAGTTATCAGCATTACATCGCAACACTTCTCTTTAATCCATCTATCTAACAAGTCCTTTCTTCACTTAAAAGCTCTAGTTCTCAGCACTTCCTCTACTGGCAAGCCTTTTAGCAACTTCTTCATCATTCAGCGACATATAATAGATACGGGGAGCGACTTTGGTCTTTTTGAAGATGTCATCTAAAGTAATAATAGGGGGGTTATTTTTATCAGCAACAGGTGGAGCCAACCTCTCTTTTATTGGTGGCGCACTAGGAGGAGCAGGTGGTGGCTGGCGGGTGAGTGGATGTTCTGACTCAACCTGTTGTTTGCGACCCTGCTGCCAAGCAGGTCGAGCCAACCTCTCTCTTATTGATGGTGCAGTAGGAGGTACAGTTGGTGGTTGGCG-CGTGAGTGGA</genome_strand>
        <mrna_strand>ATCATCA-ATGCATCTCTTCGA-TTCTTAAAATTTTACACTAAAGAAAACGAATGGAGATAAATGGCATTTACAGCTACGGCGCAATTCAACGATGAATCTGGATGAAGAAAGAAGGCAGATTCTGCACATTTTGTTATGTTTCTTCAACCCAAAGTAAAATACAGTAGAGACTTCAACCTTGCAGTAACCATTAACAACGAAAATAGAAAAGAAAGCAAGGTCTTAAGTGAGCCTCAAGACTGCAACTTCTCTGTGAGGGTAAATTAGCAGTTATCAGCATTACATCGCAACACCTCTCCATATACCATCTATCTAACAAGTCCTTTGTTCACTTAAAAGCTCTAGTTCTCAGCACCTCCTCTACTGGCAAGCTTTTTAGCAACTTCTTCATCAGTCAGCGGTAAATAATAGATACGGGGAGCGGCTTTGGTCTTTCTGAAGATGTCATCCAAAGTAATAACAGGGGGGTCATTTTTATCAGCAACAGGTGGAACCAACTTCTCTTTTATTGGTGGCGCAGTAGGAGGAGCAGGTGGTGCCTGGCGCGTGAGTGGATGTTCTGACTCAACCTGTTGTTTGCGACCCTGCTGCCAAGCAGGTGGAGCCAACCTCTCTTTTATTGGTAGCGCAGTAGGAGGAGCAGGTGGTGGCTGGCGCCATTAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321977" ref_strand="+" ref_description="SGN-E321977 [cTOB-29-B3]">
      <seq>agcagcaacagacagagggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100679" stop="105785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100979" g_stop="100995" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100996" i_stop="101299" i_length="304">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="102" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105030" g_stop="105485" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="558" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E321977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100979" e_stop="100995"/>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAACAGACAGAGGTTAACAAATCTTATCTACTTTCTCTCTCGCTTTAAGCATTCGATAAATTTCACAGCTTCTCCATAAATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTT</genome_strand>
        <mrna_strand>AGCAGCAACAGACAGAG................................................................................................................................................................................................................................................................................................................GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437163" ref_strand="+" ref_description="SGN-E437163 [cSTA-2-N4]">
      <seq>ctgccagggaaatttcacagcttccataaattaaaaccctagaaattctcttcatctcaagcccattagcattttaccaaacctcgattttcttcccaaaagaaccagtttttttttttgtgtcatttttatataaattataccgtgtattgatatatatatattattaacagatcaatataatttaggattacctgtattgttttgcttagatttgtattaatttgtttctgtttctaacaattgtgtgccttttgtttctgggattagggtttctctcgtttctgttctggaactagggttttcaccatctttttggtcgaaccgtttcggtcttttagtgactatttgcacctggtttgtcaaagtgattttttcacttggtggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggaagagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttaggcgattaaatgaagctatctgcatagaaatagaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100741" stop="105564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101033" g_stop="101384" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="0.77"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105264" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="591" r_length="234" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E437163" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101033" e_stop="101384"/>
          <exon e_start="105030" e_stop="105264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTC-GATAAATTTCACAGCTTCTCCATAAATTAAAACCCTAGAAATTCTCTTCATCTCAAG-CCATTAGCATTTTA-CAAATC-CAATTTTCTT-CCGAAAGAA-CAG--TTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATA-CTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTG-CTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAA-AGTTTTGGTGTCCAAGTGACTATTTGCA-CTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATC</genome_strand>
        <mrna_strand>CTGCCAGGGAAATTTCACAGCTTC-C-ATAAATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCCATTAGCATTTTACCAAACCTCGATTTTCTTCCCAAAAGAACCAGTTTTTTTTTTTGTGTCATTTTTATATAAATTATA-CCGTGTATTGATAT--ATATATAT-T-ATTAACAGATCAATATAATTTAGGATTACCTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGTTTCTAACAATTGTGTGCCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTCTGGAACTAGGGTTTTCACCATCTTTTTGGTCGAACCGTTTCGGTCTTTTAGTGACTATTTGCACCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCAAAGTGA-TTTTTTCACTTGGTGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGAAGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGGCGATTAAATGAAGCTATCTGCATAGAAATAGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415516" ref_strand="+" ref_description="SGN-E415516 [STM-21-O22]">
      <seq>atttcacagcttccataaattaaaaccctagaaattctcttcatctcaagccattagcattttacaaactcgattttcttccaaaagaacagtttttttttttgtgtcatttttatataaattatacgtgtattgatatatatatattattaacagatcaatataatttaggattactgtattgttttgcttagatttgtattaatttgtttctgtttctaacaattgtgtgcttttgtttctgggattagggtttctctcgtttctgttctggaactagggttttcaccatctttttggtcgaacgtttcggtcttttagtgactatttgcactggtttgtcaaagtgattttttcacttggtggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggaagagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttaggcgattaaatgaagctatctgcatagaaatagaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttacattggttgatgatgttctggagcatccccaaattgaagtactaatggttctgatcagattactgatgctacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100743" stop="105684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101043" g_stop="101384" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105384" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="689" r_length="353" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E415516" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101043" e_stop="101384"/>
          <exon e_start="105030" e_stop="105384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACAGCTTCTCCATAAATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAG--TTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACAT</genome_strand>
        <mrna_strand>ATTTCACAGC-T-TCCATAAATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAACTCGATTTTCTTCCAAAAGAACAGTTTTTTTTTTTGTGTCATTTTTATATAAA-T-TATACGTGTATTGATAT--ATATATAT-T-ATTAACAGATCAATATAATTTAGGATTACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGTTTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTCTGGAACTAGGGTTTTCACCATCTTTTTGGTCGAACGTTTCGGTCTTTTAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCAAAGTGA-TTTTTTCACTTGGTGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGAAGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGGCGATTAAATGAAGCTATCTGCATAGAAATAGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTACATTGGTTGATGATGTTCTGGAGCATCCCCAAATTGAAGT-ACTAATGGTTCTGATCAGATTACTGATGCTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329831" ref_strand="+" ref_description="SGN-E329831 [cTOD-3-H21]">
      <seq>aattaaaaccctagaaattctcttcatcgcaagccattagcattttacaaatccaattttcttccgaaagaacagtttttcttggtgtcatttttatataaattatatacgtgtattgatataaatatatatataattaacagatcaatataatttaggaatactgtattgttttgcttagatttgtattaatttgtttctgattctaacaattgtgtgcttttgtttctgggattagggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100762" stop="105521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101062" g_stop="101384" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105221" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="515" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E329831" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101062" e_stop="101384"/>
          <exon e_start="105030" e_stop="105221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCT</genome_strand>
        <mrna_strand>AATTAAAACCCTAGAAATTCTCTTCATCGCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337644" ref_strand="+" ref_description="SGN-E337644 [cTOE-11-L12]">
      <seq>tagaaattctcttcatctttagccattagcattttacaaatccaattttcttccgaaagaacagtttttcttggtgtcatttttatataaattatatacgtgtattgatataaatatatatataattaacagatcaatataatttaggaatactgtattgttttgcttagatttgtattaatttgtttctgattctaacaattgtgtgcttttgtttctgggattagggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100773" stop="105564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101073" g_stop="101384" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105264" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="547" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E337644" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101073" e_stop="101384"/>
          <exon e_start="105030" e_stop="105264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATC</genome_strand>
        <mrna_strand>TAGAAATTCTCTTCATCTTTAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603320" ref_strand="+" ref_description="SGN-E603320 [56406]">
      <seq>cttcatctcaagccattagcattttacaaactcgattttcttccaaaagaacagttttttttttgtgtcatttttatataaattatacgtgtattgatatatatatattattaacagatcaatataatttaggattactgtattgttttgcttagatttgtattaatttgtttctgtttctaacaattgtgtgcttttgtttctgggattagggtttctctcgtttctgttctggaactagggttttcaccatctttttggtcgaacgtttcggtcttttagtgactatttgcactggtttgtcaaagtgattttttcacttggcggctaagatgtcggactgccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggaagagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttaggcgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaacagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaatatactgaacccgaccccgatcctgttaaattggttgatgatgttctggagcatccccaaattgaagttactaatggttctgatcatattactgatgctacatgtggtcttgaagatgctcaaccaaatagtaatcctgatatattggttgataacgttcagaagcaataccaagatgaatttaaccagtattgcgcagtgatgttgctagggccagcaccaagatttgtcttgtttggaatagaccagaacaaagtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100783" stop="105838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101083" g_stop="101384" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105538" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="808" r_length="511" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E603320" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101083" e_stop="101384"/>
          <exon e_start="105030" e_stop="105538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAG-TTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAA-CAGTATTG-ACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTG-TTGGAATAGACCAGAACAAAGTCAT</genome_strand>
        <mrna_strand>CTTCATCTCAAGCCATTAGCATTTTACAAACTCGATTTTCTTCCAAAAGAACAGTTTTTTTTTTGTGTCATTTTTATATAAA-T-TATACGTGTATTGATAT--ATATATAT-T-ATTAACAGATCAATATAATTTAGGATTACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGTTTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTCTGGAACTAGGGTTTTCACCATCTTTTTGGTCGAACGTTTCGGTCTTTTAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCAAAGTGA-TTTTTTCACTTGGCGGCTAAGATGTCGGACTGCCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGAAGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGGCGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAACAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAATATACTGAACCCGACCCCGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCAAATTGAAGTTACTAATGGTTCTGATCATATTACTGATGCTACATGTGGTCTTGAAGATGCTCAACCAAATAGTAATCCTGATATATTGGTTGATAACGTTCAGAAGCAATACCAAGATGAATTTAACCAGTATTGCGCAGTGATGTTGCTAGGGCCAGCACCAAGATTTGTCTTGTTTGGAATAGACCAGAACAAAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737166" ref_strand="+" ref_description="SGN-E737166 [LC08CH09]">
      <seq>cattcagagggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgttgctagggccaccaccaagaattgtcttgttggaatagaccagaacaaagtcatggatgaggttgcaactggaggtaatgatgatgttctgaagcatcaccaaaatgaagttaacgaaattgatggtgatgccagtgctagcaccaagaatgctcttgttgaaatagaccagaataaagtcttggatgaggttgcaactggagatactgctgctggagaatcaaaccgtttggaggcaccggttggtagcactagtgttataaatgagattgcatctaataaggaacacaaggttattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100998" stop="106086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="94" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105786" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="851" r_length="757" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E737166" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGGAGAATCAGACCGTTTGGAGGCACCGGTTGGTAGCACTAGTGTTATAAATGAGATTGCATCTAATAAGGAACACAAGGTTATTGATT</genome_strand>
        <mrna_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGGAGAATCAAACCGTTTGGAGGCACCGGTTGGTAGCACTAGTGTTATAAATGAGATTGCATCTAATAAGGAACACAAGGTTATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736525" ref_strand="+" ref_description="SGN-E736525 [LC06AD09]">
      <seq>ggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgttgctagggccaccaccaagaattgtcttgttggaatagaccagaacaaagtcatggatgaggttgcaactggaggtaatgatgatgttctgaagcatcaccaaaatgaagttaacgaaattgatggtgatgccagtgctagcaccaagaatgctcttgttgaaatagaccagaataaagtcttggatgaggttgcaactggagatactgctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="101000" stop="106000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105700" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="756" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E736525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGG</genome_strand>
        <mrna_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315851" ref_strand="+" ref_description="SGN-E315851 [cTOA-26-I19]">
      <seq>acagacagagggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgttgctagggccaccaccaagaattgtcttgttggaatagaccagaacaaagtcatggatgaggttgcaactggaggtaatgatgatgttctgaagctcaccaaaatgaagttaacgaaattgatggtgatgccagtgctagcacaagaatgctcttgttgaaatagacagaataaagtcttggatgaggttgcaactggagatactgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100998" stop="105998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="95" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105698" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="761" r_length="666" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E315851" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCT</genome_strand>
        <mrna_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGC-TCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCA-CAAGAATGCTCTTGTTGAAATAGA-CAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703844" ref_strand="+" ref_description="SGN-E703844 [FA22CE06]">
      <seq>cagacagagggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgttgctagggccaccaccaacaattgtcttgttggaataaaccacaacaaagtcatggatgaggttgcaactggaggtaatgatgatgttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100998" stop="105876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="94" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105576" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="641" r_length="547" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E703844" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGA</genome_strand>
        <mrna_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAACAATTGTCTTGTTGGAATAAACCACAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367014" ref_strand="+" ref_description="SGN-E367014 [cLPT-6-N1]">
      <seq>ggtttctctcttttctgttctggaactagggttttcaccatctttttggttgaaagttttggtgttcaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaagggttgaaggatgatctggttaggcgattaaatgaagctatctgcatagaaatggaagctgctacagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagttactcatggttctgaacatattactgatactacatgtggtcttgaagaagctcaaccaaatagtaatcctgatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="101000" stop="105727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105427" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="483" r_length="398" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E367014" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATT</genome_strand>
        <mrna_strand>GGTTTCTCTCTTTTCTGTTCTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTTCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGGTTGAAGGATGATCTGGTTAGGCGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTACAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTTACTCATGGTTCTGAACATATTACTGATACTACATGTGGTCTTGAAGAAGCTCAACCAAATAGTAATCCTGATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443698" ref_strand="+" ref_description="SGN-E443698 [cSTA-39-B17]">
      <seq>cagcaatagacagagggtttctctcgtttctgttctggaactagggttttcaccatctttttggtcgaaagtttcggtcttttagtgactatttgcactggtttggcaaagtgattttttcacttggtggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaaaggaagagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttaggcgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatccccaaattgaagttactaatggttctgatcagattactgatgctacatgtgggcttgaagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100998" stop="105702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="100" r_length="85" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105402" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="472" r_length="372" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E443698" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTC</genome_strand>
        <mrna_strand>GGTTTCTCTCGTTTCTGTTCTGGAACTAGGGTTTTCACCATCTTTTTGGTCGAAAGTTTCGGTCTTTTAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCAAAGTGATTTT-TTCACTTGGTGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAAGGAAGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGGCGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCAAATTGAAGTTACTAATGGTTCTGATCAGATTACTGATGCTACATGTGGGCTTGAAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419222" ref_strand="+" ref_description="SGN-E419222 [STM-29-O7]">
      <seq>cagcaatagacagagggtttctctcgtttctgttctggaactagggttttcaccatctttttggtcgaaagtttcggtcttttagtgactatttgcactggtttgtcaaagtgattttttcacttggtggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaaaggaagagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttaggcgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatccccaaattgaagttactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100998" stop="105656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101300" g_stop="101384" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="100" r_length="85" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105356" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="426" r_length="326" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E419222" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101300" e_stop="101384"/>
          <exon e_start="105030" e_stop="105356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCAT</genome_strand>
        <mrna_strand>GGTTTCTCTCGTTTCTGTTCTGGAACTAGGGTTTTCACCATCTTTTTGGTCGAAAGTTTCGGTCTTTTAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCAAAGTGATT-TTTTCACTTGGTGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAAGGAAGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGGCGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCAAATTGAAGTTACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740372" ref_strand="+" ref_description="SGN-E740372 [LC21AF07]">
      <seq>gtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctgagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgttgctagggccaccaccaagaattgtcttgttggaatagaccagaacaaagtcatggatgaggttgcaactggaggtaatgatgatgttctgaagcatcaccaaaatgaagttaacgaaattgatggtgatgccagtgctagcaccaagaatgctcttgttgaaatagaccagaataaagtcttggatgaggttgcaactggagatactgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="101001" stop="105998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101301" g_stop="101384" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105698" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="753" r_length="669" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E740372" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101301" e_stop="101384"/>
          <exon e_start="105030" e_stop="105698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCT</genome_strand>
        <mrna_strand>GTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTGAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249874" ref_strand="+" ref_description="SGN-E249874 [cLEF-57-J15]">
      <seq>ataaatggaaagtatcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagttaggatgatgatcgtgacattgatcctgccactggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgttgctagggccaccaccaagaattgtcttgttggaatagaccagaacaaagtcatggatgaggctgcaactggaggtaatgatgatgttctgaagcatcaccaaaatgaagttaacgaaattgatggtgatgccagtgctagcaccaagaatgctcttgttgaaatagaccagaataaagtcttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="104803" stop="105971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105103" g_stop="105671" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E249874" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105103" e_stop="105671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGAT</genome_strand>
        <mrna_strand>ATAAATGGAAAGTATCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTTAGGATGATGATCGTGACATTGATCCTGCCACTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGCTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365900" ref_strand="+" ref_description="SGN-E365900 [cLPT-11-O18]">
      <seq>cgggatggttctattccagtcattagcactagacaggatgttgaggatatgaaaatttcatcttatgaggtagtgcttgaggacaaccttacgggacaagaaaatgatgtggaggtaaccccagtaacatcagaggaagccttgaaaaaccacagcattaagttggataatgagggtctgaaactctcagacatggatgctgagccagatatgtccaatccagccactcaggtatatgaggtcaaccctaatttagggtctcaagtaaaatctgactcattttctactgatactttgcccattaatgaaaataaagatttaaatgataatttgaatgctgataatgtcaaattagaaactgaagttgttaggcaagagatggagctgcagtcatccagcaaagacctatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105529" stop="106539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105828" g_stop="106239" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E365900" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105828" e_stop="106239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATGGTTCTATTCCAGTCAGTAGCACTAGACAGGATGTTGAGGATATGAAAATTTCATCTTATGAGGGAGTGCTTGAGGACAACCTTAGGGGACAAGAAAATGATGTGGAGGTAACCCCAGTAACATCAGAGGAAGCATTGAAAAACCACAGCATTAAGTTGGATAATGAGGGTCTGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTTAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAG</genome_strand>
        <mrna_strand>CGGGATGGTTCTATTCCAGTCATTAGCACTAGACAGGATGTTGAGGATATGAAAATTTCATCTTATGAGGTAGTGCTTGAGGACAACCTTACGGGACAAGAAAATGATGTGGAGGTAACCCCAGTAACATCAGAGGAAGCCTTGAAAAACCACAGCATTAAGTTGGATAATGAGGGTCTGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTTAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGCCCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200108" ref_strand="+" ref_description="SGN-E200108 [cLEB-7-B13]">
      <seq>gcacgaggaaactctcagacatggatgctgagccagatatgtccaatccagccactcaggtatatgaggtcaaccctaattgagggtctcaagtaaaatctgactcattttctactgatactttgaccattaatgaaaataaagatttaaatgataatttgaatgctgataatgtcaaattaaaaactgaagttgttaggcaagagatggagctgcattcatccatcaaagacctatcaagtgttggtagctctcatccattggatggtcatatgccacatgaaatgcagggtcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105707" stop="106598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105999" g_stop="106298" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E200108" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105999" e_stop="106298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTCTGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTTAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTT</genome_strand>
        <mrna_strand>GCACG-AGGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTGAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAAAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCATTCATCCATCAAAGACCTATCAAGTGTTGGTAGCTCTCATCCATTGGATGGTCATATGCCACATGAAATGCAGGGTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409736" ref_strand="+" ref_description="SGN-E409736 [PPI-14-N16]">
      <seq>agtaaaatctgactcattttctactgatactttgcccattaatgaaaataaagatttaaatgataatttgaatgctgataatgtcaaattagaaactgaagttgttaggcaggagatggagctgcagtcatccagcaaagacctatcaggtgttggtagctctcatccattggatggtcagatgccacatgagatgcagggtcttgttggagaaactgatgatgacaaatcttcagatgtgaaatttagcatgaaaaatgacaatgcagatcaggtttctgttgacgtttccaaggtagagcatgatttcgagagtaagactccaaataatagtgagcaacaacccgatatacagtttgaaaatgctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgaggcatctgcggaagatacacatggtcttgctgcttctggtgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagataaacttggatcagtcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggattttgatcatatttctaagaaggagaatgacaagactgaagagtttattacgggaatgacagaagagccaaangttcgaccaagtggttcttctgatgcaatgcagctagacattccttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105791" stop="107186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106091" g_stop="106557" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106886" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="707" r_length="237" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E409736" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106091" e_stop="106557"/>
          <exon e_start="106650" e_stop="106886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAG---CAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTG</genome_strand>
        <mrna_strand>AGTAAAATCTGACTCATTTTCTACTGATACTTTGCCCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAGGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACAACCCGATATACAGTTTGAAAATGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACATGGTCTTGCTGCTTCTGGTGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATAAACTTGGATCAGTCTTCAGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAGCATGTGGATTTTGATCATATTTCTAAGAAGGAGAATGACAAGACTGAAGAGTTTATTACGGGAATGACAGAAGAGCCAAANGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316304" ref_strand="+" ref_description="SGN-E316304 [cTOA-23-P6]">
      <seq>gtcatccagcaaagacctatcaggtgttggtagctctcatccattggatggtcagatgccacatgagatgcagggtcttgttggagaaactgatgatgacaaatcttcagatgtgaaatttagcatgaaaaatgacaatgcagatcaggtttctgttgacgtttccaaggtagagcatgatttcgagagtaagactccaaataatagtgagcaacccgatatacagtttgaaaaagctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgaggcatctgcggaagatacacacgatcttgctgtttctggtgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagataacttggatcagtcttctgctgatgattccatggaggaggatgtagtagagacaaaacatgtggattttgatcatatttctaagaaagagaatgacaagactgatgagtttattacgggaatgacagaagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcaagaactaaagataagtctcttgctttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105917" stop="107232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106217" g_stop="106557" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106932" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="622" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E316304" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106217" e_stop="106557"/>
          <exon e_start="106650" e_stop="106932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTC</genome_strand>
        <mrna_strand>GTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGA-TAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAG-AACTAAAGATAAGTCTCTTGCTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703432" ref_strand="+" ref_description="SGN-E703432 [FA21BH10]">
      <seq>gccacatgagatgcagggtcttgttggagaaactgatgatgacaaatcttcagatgtgaaatttagcatgaaaaatgacaatgcagatcaggtttctgttgacgtttccaaggtagagcatgatttcgagagtaagactccaaataatagtgagcaacccgatatacagtttgaaaaagctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgaggcatctgcggaagatacacacgatcttgctgtttctggtgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagattaacttggatcagtcttctgctgatgattccatggaggaggatgtagtagagacaaaacatgtggattttgatcatatttctaagaaagagaatgacaagactgatgagtttattacgggaatgacagaagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcaagaaactaaagataagtctcttgctttgtcagagaagagaaagtttcaagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105974" stop="108269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106274" g_stop="106557" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106952" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="587" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107613" g_stop="107798" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="773" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107891" g_stop="107969" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="852" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E703432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106274" e_stop="106557"/>
          <exon e_start="106650" e_stop="106952"/>
          <exon e_start="107613" e_stop="107798"/>
          <exon e_start="107891" e_stop="107969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAGGTACTCATGTCTTTTCTTTAATTGTCTCTCTTTCCCTCCTTTTTTTGCAGTAAATTCTCCCCTCCTGTTCTACACATGTTTATTGATCACTTCTTTTTTACTTTTACAATTTTATTATTAGGATTTGTTGCTTCCTTATCAGAAAATAATATTAGAGTTAGCTGTTCATTGCTTATGTATTCTTTGAAATGTTTTCGTGAAGCTTTAAATGGTGAAACTTTTGTATATTTTATATGGTGAAGTCCAGATTGTTTTTTTTTGAACATCGGTAAAGTTGGTGAAGTCCAGATTGTTAGTATGTTTATTAGTTCTGTTTTTCTTGTGAATGCTCAAACATTTGATTGGACCGCATGTTTTACTAGAATATTGCCACAAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCA</genome_strand>
        <mrna_strand>GCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306750" ref_strand="+" ref_description="SGN-E306750 [cLEY-19-H23]">
      <seq>ggtcttgttggagaaactgatgatgacaaatcttcagatgtgaaatttagcgtgaaaaatgacaatgcagatcaggtttctgttgacgtttccaaggtagagcatgatttcgagagtaagactccaaataatagtgagcaacccgatatacagtttgaaaaagctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgaggcatctgcggaagatacacacgatcttgctgtttctggtgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagattaacttggatcagtcttctgctgatgattccatggaggaggatgtagtagagacaaaacatgtggattttgatcatatttctaagaaagagaatgacaagactgatgagtttattacgggaatgacagaagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105990" stop="107180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106290" g_stop="106557" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106880" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="499" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E306750" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106290" e_stop="106557"/>
          <exon e_start="106650" e_stop="106880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTC</genome_strand>
        <mrna_strand>GGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCGTGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439701" ref_strand="+" ref_description="SGN-E439701 [cSTA-13-O23]">
      <seq>cccgggctgcaggttgacgtttccaaggtagagcatgatttcgagagtaagactccaaataatagtgagcaacaacgcgatatacagtttgaaaatgctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgaggcatctgcggaagatgcacatggtcttgctgcttctggcgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagataaacttggatcagtcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggattttgatcatatttctaagaaggagaatgacaagactgaagagtttattacgggaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="106071" stop="107124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106371" g_stop="106557" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="202" r_length="190" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106824" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="377" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E439701" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106371" e_stop="106557"/>
          <exon e_start="106650" e_stop="106824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAAC--C-CGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGAC</genome_strand>
        <mrna_strand>GTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACAACGCGATATACAGTTTGAAAATGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATGCACATGGTCTTGCTGCTTCTGGCGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATAAACTTGGATCAGTCTTCAGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAGCATGTGGATTTTGATCATATTTCTAAGAAGGAGAATGACAAGACTGAAGAGTTTATTACGGGAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417315" ref_strand="+" ref_description="SGN-E417315 [STM-25-O21]">
      <seq>ttgacgtttccaaggtagagcatgatttcgagattaagactccaaataatagtgagcaacaacccgatataccagtttgaaaatggctagaactttagggtgatgttgaagagcctagtttgtcacccatgaaaattgagggcatctgcggaagatgcacatggtcttgctgcttctggcgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagataaacttggatcagtcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggattttgatcatatttctaagaaggagaatgacaagactgaagagtttattacgggaatgacagaagagcccaaagttcgaccaagtggctcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcctcaagaaactaaagataagtctcttgctttgtcagagaagagaaagtttcaagatgaagcaggaggtgggagtaaagagcctgcaaagaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccacccctatcaaacccatccttggcaggactaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="106072" stop="108062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106372" g_stop="106557" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106952" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="499" r_length="306" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107613" g_stop="107762" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="649" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E417315" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106372" e_stop="106557"/>
          <exon e_start="106650" e_stop="106952"/>
          <exon e_start="107613" e_stop="107762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAG---CAACCCGATATA-CAGTTTGAAAA-AGCTAGAACTTTAGG-TGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGA-GGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCG--T-CTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAGGTACTCATGTCTTTTCTTTAATTGTCTCTCTTTCCCTCCTTTTTTTGCAGTAAATTCTCCCCTCCTGTTCTACACATGTTTATTGATCACTTCTTTTTTACTTTTACAATTTTATTATTAGGATTTGTTGCTTCCTTATCAGAAAATAATATTAGAGTTAGCTGTTCATTGCTTATGTATTCTTTGAAATGTTTTCGTGAAGCTTTAAATGGTGAAACTTTTGTATATTTTATATGGTGAAGTCCAGATTGTTTTTTTTTGAACATCGGTAAAGTTGGTGAAGTCCAGATTGTTAGTATGTTTATTAGTTCTGTTTTTCTTGTGAATGCTCAAACATTTGATTGGACCGCATGTTTTACTAGAATATTGCCACAAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACT</genome_strand>
        <mrna_strand>TTGACGTTTCCAAGGTAGAGCATGATTTCGAGATTAAGACTCCAAATAATAGTGAGCAACAACCCGATATACCAGTTTGAAAATGGCTAGAACTTTAGGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGGCATCTGCGGAAGATGCACATGGTCTTGCTGCTTCTGGCGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATAAACTTGGATCAGTCTTCAGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAGCATGTGGATTTTGATCATATTTCTAAGAAGGAGAATGACAAGACTGAAGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGCTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAGAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACCCCTATCAAACCCATCCTTGGCAGGACTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445941" ref_strand="+" ref_description="SGN-E445941 [cSTA-19-I16]">
      <seq>ttgacgtttccaaggtagagcatgatttcgagagtaagactccaaataatagtgagcaacaacccgatatacagtttgaaaatgctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgaggcatctgcggaagatgcacatggtcttgctgcttctggcgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagataaacttggatcagtcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggattttgatcatatttctaagaaggagaatgacaagactgaagagtttattacgggaatgacagaagagcccaaagttcgaccaagtggctcttctgatgcaatgcagctagacattccttctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="106072" stop="107188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106372" g_stop="106557" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106888" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="428" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E445941" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106372" e_stop="106557"/>
          <exon e_start="106650" e_stop="106888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAG---CAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAG</genome_strand>
        <mrna_strand>TTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACAACCCGATATACAGTTTGAAAATGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATGCACATGGTCTTGCTGCTTCTGGCGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATAAACTTGGATCAGTCTTCAGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAGCATGTGGATTTTGATCATATTTCTAAGAAGGAGAATGACAAGACTGAAGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGCTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619413" ref_strand="+" ref_description="SGN-E619413 [70102]">
      <seq>catctgcggaagatacacatggtcttgctgcttctggtgatgatagaaaagattttagcaagattgccgatgtagtggatggtgagaatatggaaaagataaacttggatcagtcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggattttgatcatatttctaagaaggagaatgacaagactgaagagtttattacgggaatgacagaagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcctcaagaaactaatgataagtctcttgctttgtcagagaagagaaagtttcaagatgaagcaggaggtgggagtaaagaacctgcaaagaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccacccctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgctgtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaaggaagccacagagaccagaaacgcgggtgtacaatctccaatgggcaccaaatggaggtcgtctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="106207" stop="108772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106507" g_stop="106557" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106952" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="357" r_length="306" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107613" g_stop="107798" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="543" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="695" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108394" g_stop="108474" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="778" r_length="83" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E619413" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106507" e_stop="106557"/>
          <exon e_start="106650" e_stop="106952"/>
          <exon e_start="107613" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCG--T-CTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAGGTACTCATGTCTTTTCTTTAATTGTCTCTCTTTCCCTCCTTTTTTTGCAGTAAATTCTCCCCTCCTGTTCTACACATGTTTATTGATCACTTCTTTTTTACTTTTACAATTTTATTATTAGGATTTGTTGCTTCCTTATCAGAAAATAATATTAGAGTTAGCTGTTCATTGCTTATGTATTCTTTGAAATGTTTTCGTGAAGCTTTAAATGGTGAAACTTTTGTATATTTTATATGGTGAAGTCCAGATTGTTTTTTTTTGAACATCGGTAAAGTTGGTGAAGTCCAGATTGTTAGTATGTTTATTAGTTCTGTTTTTCTTGTGAATGCTCAAACATTTGATTGGACCGCATGTTTTACTAGAATATTGCCACAAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAA-GAAGCCACAGAGACCAGAAACGC-GGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTG</genome_strand>
        <mrna_strand>CATCTGCGGAAGATACACATGGTCTTGCTGCTTCTGGTGATGATAGAAAAG............................................................................................ATTTTAGCAAGATTGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATAAACTTGGATCAGTCTTCAGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAGCATGTGGATTTTGATCATATTTCTAAGAAGGAGAATGACAAGACTGAAGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCCTCAAGAAACTAATGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAGGAGGTGGGAGTAAAGAACCTGCAAAGAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACCCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCTGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGGAAGCCACAGAGACCAGAAACGCGGGTGTACAATCTCCAATGGGCACCAAATGGAGGTCGTCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348441" ref_strand="+" ref_description="SGN-E348441 [cTOF-30-G7]">
      <seq>acgatcttgctgtttctggtgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagattaacttggatcagtcttctgctgatgattccatggaggaggatgtagtagagacaaaacatgtggattttgatcatatttctaagaaagagaatgacaagactgatgagtttattacgggaatgacagaagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcaagaaactaaagataagtctcttgctttgtcagagaagagaaagtttcaagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaagggtgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggaatcacccaaggagcgctttgtccaaagtcttcaaaacagccactacttctctcaaattgagaattcttgcggccctttacgctgaaagctgtgcaagagctccttgcaggactggtgaagtctgcagtttctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="106225" stop="108312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106525" g_stop="106557" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106952" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="336" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107613" g_stop="107798" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="522" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.510" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107891" g_stop="108012" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="639" r_length="117" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E348441" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106525" e_stop="106557"/>
          <exon e_start="106650" e_stop="106952"/>
          <exon e_start="107613" e_stop="107798"/>
          <exon e_start="107891" e_stop="108012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAGGTACTCATGTCTTTTCTTTAATTGTCTCTCTTTCCCTCCTTTTTTTGCAGTAAATTCTCCCCTCCTGTTCTACACATGTTTATTGATCACTTCTTTTTTACTTTTACAATTTTATTATTAGGATTTGTTGCTTCCTTATCAGAAAATAATATTAGAGTTAGCTGTTCATTGCTTATGTATTCTTTGAAATGTTTTCGTGAAGCTTTAAATGGTGAAACTTTTGTATATTTTATATGGTGAAGTCCAGATTGTTTTTTTTTGAACATCGGTAAAGTTGGTGAAGTCCAGATTGTTAGTATGTTTATTAGTTCTGTTTTTCTTGTGAATGCTCAAACATTTGATTGGACCGCATGTTTTACTAGAATATTGCCACAAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATG</genome_strand>
        <mrna_strand>ACGATCTTGCTGTTTCTGGTGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGGTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGAATCACCCAAGGAGCGCTTTG............................................................................................T-CCAAAGTCTTC-AAAACAGCCACTACTTCTCTC-AAATTGAGAA-TTCTTGCGGCCCTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGC-AGGACTGGTGAAGTCTGCAGTTTCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301438" ref_strand="+" ref_description="SGN-E301438 [cLEX-8-M6]">
      <seq>ggatggtgagaatatggaaaagattaacttggatcagtcttctgctgatgattccatggaggaggatgtagtagagacaaaacatgtggattttgatcatatttctaagaaagagaatgacaagactgatgagtttattacgggaatgacagaagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcaagaaactaaagataagtctcttgctttgtcagagaagagaaagtttcaagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="106375" stop="108079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106675" g_stop="106952" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107613" g_stop="107779" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="445" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E301438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106675" e_stop="106952"/>
          <exon e_start="107613" e_stop="107779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAGGTACTCATGTCTTTTCTTTAATTGTCTCTCTTTCCCTCCTTTTTTTGCAGTAAATTCTCCCCTCCTGTTCTACACATGTTTATTGATCACTTCTTTTTTACTTTTACAATTTTATTATTAGGATTTGTTGCTTCCTTATCAGAAAATAATATTAGAGTTAGCTGTTCATTGCTTATGTATTCTTTGAAATGTTTTCGTGAAGCTTTAAATGGTGAAACTTTTGTATATTTTATATGGTGAAGTCCAGATTGTTTTTTTTTGAACATCGGTAAAGTTGGTGAAGTCCAGATTGTTAGTATGTTTATTAGTTCTGTTTTTCTTGTGAATGCTCAAACATTTGATTGGACCGCATGTTTTACTAGAATATTGCCACAAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGAT</genome_strand>
        <mrna_strand>GGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412051" ref_strand="+" ref_description="SGN-E412051 [STM-15-N5]">
      <seq>aagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcctcaagaaactaaagataagtctcttgctttgtcagagaagagaaagtttcaagatgaagcaggaggtgggagtaaagagcctgcaaagaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccacccctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacactgaaagctgtgcaagagctccttgcaaggactggtgaagtgtgctgtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggaggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctncaccgaaagttaccagtcctgctgtgcctgcttcatcctctgttcaaacaccacctgctcagcagcagggtcgcaaacagcaagctgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="106527" stop="108929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106827" g_stop="106952" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107613" g_stop="107798" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="315" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="467" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108394" g_stop="108629" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="703" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E412051" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106827" e_stop="106952"/>
          <exon e_start="107613" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCT-C--AAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAGGTACTCATGTCTTTTCTTTAATTGTCTCTCTTTCCCTCCTTTTTTTGCAGTAAATTCTCCCCTCCTGTTCTACACATGTTTATTGATCACTTCTTTTTTACTTTTACAATTTTATTATTAGGATTTGTTGCTTCCTTATCAGAAAATAATATTAGAGTTAGCTGTTCATTGCTTATGTATTCTTTGAAATGTTTTCGTGAAGCTTTAAATGGTGAAACTTTTGTATATTTTATATGGTGAAGTCCAGATTGTTTTTTTTTGAACATCGGTAAAGTTGGTGAAGTCCAGATTGTTAGTATGTTTATTAGTTCTGTTTTTCTTGTGAATGCTCAAACATTTGATTGGACCGCATGTTTTACTAGAATATTGCCACAAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTT</genome_strand>
        <mrna_strand>AAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAGAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACCCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACACTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTGTGCTGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGAGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTNCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTCTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAGCAAGCTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418499" ref_strand="+" ref_description="SGN-E418499 [STM-27-N13]">
      <seq>aaaaaattgcctattttttcattgttaaagttgaagctcacaactggaaagcagctaaagttgtgcttactggagtgtgtctgtataatgaaatttctgataccaatggcaggtattagaatcttcttgcaatgtgggatatgaagccctctccatttacatcaactttggataattatagcgataatggcgaataagaatacgatttattcttttcttattccataatttggttcttaagattttcgacttcttgtggattctttgtagatgaagcaggaggtgggagtaaagagcctgcaaagaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccacccctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacactgaaagctgtgcaagagctccttgcaggactggtgaagtgtgctgtttctggatggaccagataaagacccattgctatntcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatgggaggtcgtctcctggttgcagatttttgttgatcctcaacaggtgcaaaccaagatagaagggtcgggaacctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107026" stop="108835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107326" g_stop="107798" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="607" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108535" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="752" r_length="145" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E418499" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107326" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAAT-GGTGGTCGTCTCCTGGTTGCAGA-TTTTGTTGATCCTCAACAGGTGCAAACCAAGATAG-AGGGTCGGGAACCTGCTT</genome_strand>
        <mrna_strand>AAAAAATTGCCTATTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCT-A----------A--A-GTTGTGCTTACT-G-GAGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCCATTTACATCAACTTTGGATAATTATAGCGATAATGGCGAATAAGAATACGATTTATTCTTTTCTTATTCCATAATTTGG-TTCTTAAGATTTTCGACTTCTTGTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAGAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACCCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACACTGAAAGCTGTGCAAGAGCTCCTTGC-AGGACTGGTGAAGTGTGCTGTTTCTGGATGGACCAGATAAAGACCCATTGCTATNTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGGAGGTCGTCTCCTGGTTGCAGATTTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAAGGGTCGGGAACCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442118" ref_strand="+" ref_description="SGN-E442118 [cSTA-32-C15]">
      <seq>aaaaaattgcctattttttcattgttaaagttgaagctcacaactggaaagcagctaaagttgtgcttactggagtgtgtctgtataatgaaatttctgataccaatggcaggtattagaatcttcttgcaatgtgggatatgaagccctctccatttacatcaactttggataattatagcgataatggcgaataagaatacgatttattcttttcttattccataatttggttcttaagattttcgacttcttgtggattctttgtagatgaagcaggaggtgggagtaaagagcctgcaaagaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccacccctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107026" stop="108258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107326" g_stop="107798" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="107958" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="524" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E442118" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107326" e_stop="107798"/>
          <exon e_start="107891" e_stop="107958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTG</genome_strand>
        <mrna_strand>AAAAAATTGCCTATTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCT-A----------A--A-GTTGTGCTTACT-G-GAGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCCATTTACATCAACTTTGGATAATTATAGCGATAATGGCGAATAAGAATACGATTTATTCTTTTCTTATTCCATAATTTGG-TTCTTAAGATTTTCGACTTCTTGTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAGAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACCCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269177" ref_strand="+" ref_description="SGN-E269177 [cLEI-16-B15]">
      <seq>aaagtttcaagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107306" stop="108954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107602" g_stop="107798" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="349" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108654" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="610" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E269177" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107602" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCA</genome_strand>
        <mrna_strand>AAAGTTTCAAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333351" ref_strand="+" ref_description="SGN-E333351 [cTOD-20-A17]">
      <seq>caagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccacctcctgctcctcctagtgctcctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatccccctattgttactttggatgacctcttcagaaagaccaaagtcactccccgtatctattatttaccgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107311" stop="109095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107609" g_stop="107798" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="342" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108795" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="744" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E333351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107609" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTG</genome_strand>
        <mrna_strand>CAAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333480" ref_strand="+" ref_description="SGN-E333480 [cTOD-20-B17]">
      <seq>caagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccacctcctgctcctcctagtgctcctccaacaaagagatgctgccttcacctgttgctgataaaatgatccccctattgttactttggatgacctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107311" stop="109052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107609" g_stop="107798" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="342" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108752" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="699" r_length="357" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E333480" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107609" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTT</genome_strand>
        <mrna_strand>CAAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAAC-AAAGAGATGCTGCCTTCACCTGTTGCTGAT-AAAATGATCCCCCTATTGTTACTTTGGATGACCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333306" ref_strand="+" ref_description="SGN-E333306 [cTOD-20-B11]">
      <seq>caagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccacctcctgctcctcctagtgctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107311" stop="108979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107609" g_stop="107798" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="342" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108679" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="628" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E333306" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107609" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTC</genome_strand>
        <mrna_strand>CAAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333434" ref_strand="+" ref_description="SGN-E333434 [cTOD-20-A1]">
      <seq>caagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttggtcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccacctcctgctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107311" stop="108967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107609" g_stop="107798" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="342" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108667" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="616" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E333434" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107609" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTC</genome_strand>
        <mrna_strand>CAAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGGTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600740" ref_strand="+" ref_description="SGN-E600740 [53758]">
      <seq>agcaggaggtgggagtaaagagcctgcaaagaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccacccctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacactgaaagctgtgcaagagctccttgcaaggactggtgaagtgtgctgtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggaggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctctgttcaaacaccacctgctcagcagcagggtcgcaaacagcaagctgagttggaacattcactcacacgccagccaccacctgctcctcctagtgctcctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatccccctattgttactttggatgacctcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107317" stop="109055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107617" g_stop="107798" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="334" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108755" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="696" r_length="362" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E600740" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107617" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAG</genome_strand>
        <mrna_strand>AGCAGGAGGTGGGAGTAAAGAGCCTGCAAAGAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACCCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACACTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTGTGCTGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGAGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTCTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAGCAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCACCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269062" ref_strand="+" ref_description="SGN-E269062 [cLEI-16-P21]">
      <seq>aagagcctgcaaaaaggcagcgtaaatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcaacccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgactcctggttgcagattttgttgatcctcaacaggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107334" stop="108806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107634" g_stop="107798" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="317" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108506" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="430" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E269062" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107634" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCA</genome_strand>
        <mrna_strand>AAGAGCCTGCAAAAAGGCAGCGTAAATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAACCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGACTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728206" ref_strand="+" ref_description="SGN-E728206 [LA17AC02]">
      <seq>agcgtttgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccacctcctgctcctcctagtgctcctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatccccctattgttactttggatgacctcttcagaaagaccaaagtcactccccgtatctattatttaccgctgacagatgaagaagttgctaaaaagcttgccattaggggaaatgctaagccttgagatattaggtaaataaaggggcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107335" stop="109176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107635" g_stop="107798" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="316" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108876" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="799" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E728206" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107635" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTT</genome_strand>
        <mrna_strand>AGCGTTTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467556" ref_strand="+" ref_description="SGN-E467556 [cSTB-49-I2]">
      <seq>agaacctgcgaagaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccacccctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtgccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgctgtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggaggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctctgttcaaacaccacctgctcagcagcagggtcgcaaacagcaagctgagttggaacattcactcacgcgccagccaccacctgctcctcctagtgctcctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatcccccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107335" stop="109030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107635" g_stop="107798" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="316" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108394" g_stop="108730" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="653" r_length="337" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E467556" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107635" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTA</genome_strand>
        <mrna_strand>AGAACCTGCGAAGAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACCCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TGCCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCTGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGAGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTCTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAGCAAGCTGAGTTGGAACATTCACTCACGCGCCAGCCACCACCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203634" ref_strand="+" ref_description="SGN-E203634 [cLEC-15-J6]">
      <seq>tccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccaccttctgctcctcctagtgctcctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatccccctattgttactttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="107675" stop="109045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107975" g_stop="108042" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108394" g_stop="108745" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="420" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E203634" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107975" e_stop="108042"/>
          <exon e_start="108394" e_stop="108745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATG</genome_strand>
        <mrna_strand>TCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTTCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417316" ref_strand="-" ref_description="SGN-E417316 [STM-25-O21]">
      <seq>ctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatccccctattgttctttggatgacctcttcagaaagaccaaagccactccccgtatctattatttaccgctgacagatgaagaagttgctaaaaagcttgccatcaagggaaatgctaacccttgagattttaggtgaataaaaggggcatgttagatggatctgtagagtggtgttctagtgtaatgctgaaaactgcaagtttgcccgcataaagaagttgcagtctaatttgtaggcgagtagtgagtttcttgaggctcgttgagactttcctttcttttctattttcggtttgttactgcttgcagactttggttgctgctaggtgcaagtcttaactgtattttgctttgggttgaagaaacttctgaatgttcagctctgttagtctgacttctttctttctccagatttctggagaactattcgaatattaactatctgagttatgagatatattatgtaaatggtatcaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="108377" stop="109513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108677" g_stop="109212" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="546"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E417316" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417316" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108677" e_stop="109212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAAT-AAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATGAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTTGGTTTGTTACTGTTTGCAGACTTTGGTTGCTACTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGTTTGAAGATACTTCTGAATGTGCAGATTATAAAGAATCTGTGTTAGTCTGACTTCTTTCTTTATCCAGATTTTTGGAGAAGTATTTGAATATTAATCATCTGAGTTATGAGATATATTATGTAAGTGGTATCA</genome_strand>
        <mrna_strand>CTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTT-CTTTGGATGACCTCTTCAGAAAGACCAAAGCCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATCAAGGGAAATGCTAACCCTTGAGATTTTAGGTGAATAAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATAAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTCGGTTTGTTACTGCTTGCAGACTTTGGTTGCTGCTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGGTTGAAGAAACTTCTGAA--T---G--T-T-CAG---CTCTGTTAGTCTGACTTCTTTCTTTCTCCAGATTTCTGGAGAACTATTCGAATATTAACTATCTGAGTTATGAGATATATTATGTAAATGGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415517" ref_strand="-" ref_description="SGN-E415517 [STM-21-O22]">
      <seq>ctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatccccctattgttactttggatgacctcttcagaaagaccaaagccactccccgtatctattatttaccgctgacagatgaagaagttgctaaaaagcttgccattaggggaaatgctaagccttgagattttaggtgaataaagggggcatgttagatggatctgtagagtggtgttctagtgtaatgctgaaaactgcaagtttgcccgcataaagaagttgcagtctaatttgtaggcgagtagtgagtttcttgaggctcgttgagactttcctttcttttctattttcggtttgttactgcttgcagactttggttgctgctaggtgcaagtcttaactgtattttgctttgggttgaagaaacttctgaatgttcagattatgaagaatctctgttagtctgacttctttctttctccagatttctggagaactattcgaatattaactatctgagttatgagatatattatgtaagtggtatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="108377" stop="109513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108677" g_stop="109212" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="550"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E415517" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108677" e_stop="109212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAA-GGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATGAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTTGGTTTGTTACTGTTTGCAGACTTTGGTTGCTACTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGTTTGAAGATACTTCTGAATGTGCAGATTATAAAGAATCTGTGTTAGTCTGACTTCTTTCTTTATCCAGATTTTTGGAGAAGTATTTGAATATTAATCATCTGAGTTATGAGATATATTATGTAAGTGGTATCA</genome_strand>
        <mrna_strand>CTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGCCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATTTTAGGTGAATAAAGGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATAAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTCGGTTTGTTACTGCTTGCAGACTTTGGTTGCTGCTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGGTTGAAGAAACTTCTGAATGTTCAGATTATGAAGAATCTCTGTTAGTCTGACTTCTTTCTTTCTCCAGATTTCTGGAGAACTATTCGAATATTAACTATCTGAGTTATGAGATATATTATGTAAGTGGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432230" ref_strand="+" ref_description="SGN-E432230 [STM-56-B14]">
      <seq>ttctgccttcacctgttgctgataaaattgatccccctattgttactttggatgacctcttcagaaagaccaaagccactccccgtatctattatttaccgctgacagatgaagaagttgctaaaaagcttgccattaggggaaatgctaaaccttgagattttaggtgaataaaggggcatgttagatggatctgtagagtggtgttctagtgtaatgctgaaaactgcaagtttgcccgcataaagaagttgcagtctaatttgtaggcgagtagtgagtttcttgaggctcgttgagactttcctttcttttctattttcgggttgttactgcttgcagactttggttgctgctaggtgcaagtcttcactgtattttgctttgggttgaagaaacttctgaatgttcagattatgaagaatctctgttagtctgacttctttctttctccagatttctggagaactattcgaatattaactatctgagttatgagatatattatgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="108392" stop="109503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108692" g_stop="109204" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E432230" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108692" e_stop="109204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATGAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTTGGTTTGTTACTGTTTGCAGACTTTGGTTGCTACTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGTTTGAAGATACTTCTGAATGTGCAGATTATAAAGAATCTGTGTTAGTCTGACTTCTTTCTTTATCCAGATTTTTGGAGAAGTATTTGAATATTAATCATCTGAGTTATGAGATATATTATGTAAG</genome_strand>
        <mrna_strand>TTCTGCCTTCACCTGTTGCTGATAAAATTGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGCCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAACCTTGAGATTTTAGGTGAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATAAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTCGGGTTGTTACTGCTTGCAGACTTTGGTTGCTGCTAGGTGCAAGTCTTCACTGTATTTTGCTTTGGGTTGAAGAAACTTCTGAATGTTCAGATTATGAAGAATCTCTGTTAGTCTGACTTCTTTCTTTCTCCAGATTTCTGGAGAACTATTCGAATATTAACTATCTGAGTTATGAGATATATTATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401040" ref_strand="+" ref_description="SGN-E401040 [PPC-2-L20]">
      <seq>gctgccttcacctgttgctgataaaattgatccccctattgttactttggatgacctcttcagaaagaccaaagccactccccgtatctattatttaccgctgacagatgaagaagttgctaaaaagcttgccattaggggaaatgctaaaccttgagattttaggtgaataaaggggcatgttagatggatctgtagagtggtgttctagtgtaatgctgaaaactgcaagtttgcccgcataaagaagttgcagtctaatttgtaggcgagtagtgagtttcttgaggctcgttgagactttcctttcttttctattttcggtttgttactgcttgcagactttggttgctgctaggtgcaagtcttcactgtattttgctttgggttgaagaaacttctgaatgttcagattatgaagaatctctgttagtctgacttctttctttctccagatttctggagaactattcgaatattaactatctgagttatgagatatattatgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="108393" stop="109503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108693" g_stop="109204" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E401040" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108693" e_stop="109204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATGAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTTGGTTTGTTACTGTTTGCAGACTTTGGTTGCTACTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGTTTGAAGATACTTCTGAATGTGCAGATTATAAAGAATCTGTGTTAGTCTGACTTCTTTCTTTATCCAGATTTTTGGAGAAGTATTTGAATATTAATCATCTGAGTTATGAGATATATTATGTAAG</genome_strand>
        <mrna_strand>GCTGCCTTCACCTGTTGCTGATAAAATTGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGCCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAACCTTGAGATTTTAGGTGAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATAAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTCGGTTTGTTACTGCTTGCAGACTTTGGTTGCTGCTAGGTGCAAGTCTTCACTGTATTTTGCTTTGGGTTGAAGAAACTTCTGAATGTTCAGATTATGAAGAATCTCTGTTAGTCTGACTTCTTTCTTTCTCCAGATTTCTGGAGAACTATTCGAATATTAACTATCTGAGTTATGAGATATATTATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432231" ref_strand="-" ref_description="SGN-E432231 [STM-56-B14]">
      <seq>gctgccttcacctgttgctgataaaattgatccccctattgttactttggatgacctcttcagaaagaccaaagccactccccgtatctattatttaccgctgacagatgaagaagttgctaaaaagcttgccattaggggaaatgctaacccttgagattttaggtgaataaaggggcatgttagatggatctgtagagtggtgttctagtgtaatgctgaaaactgcaagtttgcccgcataaagaagttgcagtctaatttgtaggcgagtagtgagtttcttgaggctcgttgagactttcctttcttttctattttcggtttgttactgcttgcagactttggttgctgctaggtgcaagtcttccctgtattttgctttgggttgaagaaacttctgaatgttcagattatgaagaatctctgttagtctgacttctttctttctccagatttctggagaactattcgaatattaactatctgagttatgagatatattggaaaaaaaaaaaaaaaaaaccccaattagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="108393" stop="109497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108693" g_stop="109197" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="526"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E432231" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108693" e_stop="109197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATGAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTTGGTTTGTTACTGTTTGCAGACTTTGGTTGCTACTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGTTTGAAGATACTTCTGAATGTGCAGATTATAAAGAATCTGTGTTAGTCTGACTTCTTTCTTTATCCAGATTTTTGGAGAAGTATTTGAATATTAATCATCTGAGTTATGAGATATATT</genome_strand>
        <mrna_strand>GCTGCCTTCACCTGTTGCTGATAAAATTGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGCCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAACCCTTGAGATTTTAGGTGAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATAAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTCGGTTTGTTACTGCTTGCAGACTTTGGTTGCTGCTAGGTGCAAGTCTTCCCTGTATTTTGCTTTGGGTTGAAGAAACTTCTGAATGTTCAGATTATGAAGAATCTCTGTTAGTCTGACTTCTTTCTTTCTCCAGATTTCTGGAGAACTATTCGAATATTAACTATCTGAGTTATGAGATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419223" ref_strand="+" ref_description="SGN-E419223 [STM-29-O7]">
      <seq>tagttaatattcgaatagttctccagaaatctggagaaagaaagaagtcagactaacagagctgaacattcagaagtttcttcaacccaaagcaaaatacagttaagacttgcacctagcagcaaccaaagtctgcaagcagtaacaaaccgaaaatagaaaagaaaggaaagtctcaacgagcctcaagaaactcactactcgcctacaaattagactgcaacttctttatgcgggcaaacttgcagttttcagcattacactagaacaccactctacagatccatctaacatgccccttttattcacctaaaatctcaaggcttaacatttcccttgatggcaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="109474" stop="108515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109177" g_stop="108815" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E419223" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109177" e_stop="108815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTAATATTCAAATACTTCTCCAAAAATCTGGATAAAGAAAGAAGTCAGACTAACACAGATTCTTTATAATCTGCACATTCAGAAGTATCTTCAAACCAAAGCAAAATACAGTTAAGACTTGCACCTAGTAGCAACCAAAGTCTGCAAACAGTAACAAACCAAAAATAGAAAAGAAAGGAAAGTCTCAACGAGCCTCAAGAAACTCACTACTCGCCTACAAATTAGACTGCAACTTCTTCATGCGGGCAAACTTGCAGTTTTCAGCATTACACTAGAACACCACTCTACAGATCCATCTAACATGCCCC-TTTATTTACCTAATATCTCAAGGCTTAGCATTTCCCCTAATGGCAAGCTTTT</genome_strand>
        <mrna_strand>TAGTTAATATTCGAATAGTTCTCCAGAAATCTGGAGAAAGAAAGAAGTCAGACT-A-ACAG----------AGCTGAACATTCAGAAGTTTCTTCAACCCAAAGCAAAATACAGTTAAGACTTGCACCTAGCAGCAACCAAAGTCTGCAAGCAGTAACAAACCGAAAATAGAAAAGAAAGGAAAGTCTCAACGAGCCTCAAGAAACTCACTACTCGCCTACAAATTAGACTGCAACTTCTTTATGCGGGCAAACTTGCAGTTTTCAGCATTACACTAGAACACCACTCTACAGATCCATCTAACATGCCCCTTTTATTCACCTAAAATCTCAAGGCTTAACATTTCCCTTGATGGCAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416287" ref_strand="-" ref_description="SGN-E416287 [STM-22-H4]">
      <seq>tacaaacgcagcntccctnnttccctttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaaagattctagagtattttggtattatctagttttgttggttttatcatttctccagaagtttgaggccaaatacattatgatttattcatagatcaatttcccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110455" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110728" g_stop="110936" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="308" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="377" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112451" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="664" r_length="287" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E416287" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416287" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110728" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATA-CTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTG</genome_strand>
        <mrna_strand>TACAAACGCAGCNTCCCTNNTTCC-C-TTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTCCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416286" ref_strand="+" ref_description="SGN-E416286 [STM-22-H4]">
      <seq>tacaaacgcagcctccctcttccttttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacacctcttggttacaagaactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagaattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttggtctttgtngttttgaagtataccaaagattctagagtattttggtattatctaagttttgttggttttatcatttctccagaaagttgaggccaantacattatgatttattcatagatcaattttccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110428" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110728" g_stop="110936" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="310" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="379" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112450" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="666" r_length="287" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E416286" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110728" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACA-CTCTTGGTTACAAG-ACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAG-ATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGT-GTTTTGGAGTTATA-CTGAGATTCTAGAGTATTTTGGTATTATCT-AGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTT</genome_strand>
        <mrna_strand>TACAAACGCAGCCTCCCTCTT-CC--TTTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACCTCTTGGTTACAAGAACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGAATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGGTCTTTGTNGTTTTGAAG-TATACCAAAGATTCTAGAGTATTTTGGTATTATCTAAGTTTTGTTGGTTTTATCATTTCTCC--A-GAAAGTTGAGGCCAANTACATTATGATTTATTCATAGATCAATTTTCCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438565" ref_strand="+" ref_description="SGN-E438565 [cSTA-8-P3]">
      <seq>tacaaacgcagcctccctcttccttttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110428" stop="112589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110728" g_stop="110936" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="307" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="376" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112289" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="503" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E438565" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110728" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGA</genome_strand>
        <mrna_strand>TACAAACGCAGCCTCCCTCTT-CC--TTTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561578" ref_strand="-" ref_description="SGN-E561578 [16976]">
      <seq>gcaaacgcagcctccctcttccttttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcatcaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttacccgggatgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagcgtattttggtattatctagttttgttggttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110430" stop="112679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110729" g_stop="110936" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="306" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112379" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="593" r_length="218" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E561578" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561578" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110729" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTT-GCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATC</genome_strand>
        <mrna_strand>GCAAACGCAGCCTCCCTCTT-CCT--TTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTACCCGGGATGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGCGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413242" ref_strand="+" ref_description="SGN-E413242 [STM-17-H11]">
      <seq>gcaaacgcagcctccctcttccttttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcatcaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttacccgggatgctctaaaccattttactgatgttgagagaatctgtagnatctttttgttctttgtgttttggagttataccaagattctagcgtattttggtattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110430" stop="112661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110729" g_stop="110936" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="306" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112361" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="575" r_length="200" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E413242" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110729" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTT-GCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCT</genome_strand>
        <mrna_strand>GCAAACGCAGCCTCCCTCTT-CCT--TTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTACCCGGGATGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGNATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGCGTATTTTGGTATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471903" ref_strand="+" ref_description="SGN-E471903 [cSTB-26-E18]">
      <seq>gcaaacgcagcctccctcttccttttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcatcaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110430" stop="112541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110729" g_stop="110936" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="306" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112241" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="454" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E471903" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110729" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTT</genome_strand>
        <mrna_strand>GCAAACGCAGCCTCCCTCTT-CCT--TTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404763" ref_strand="+" ref_description="SGN-E404763 [PPC-15-O15]">
      <seq>caaacgcagcctccctcttccttttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcatcaacaacagactggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaagacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttacccgggatgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttccttgtgttttggagttataccaagattctagcgtattttggtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110430" stop="112658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110730" g_stop="110936" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="305" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="374" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112357" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="570" r_length="196" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="583"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E404763" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110730" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTT-GCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATT</genome_strand>
        <mrna_strand>CAAACGCAGCCTCCCTCTT-CCT--TTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATCAACAACAGACTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAAGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTACCCGGGATGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCCTTGTGTTTTGGAGTTATACCAAGATTCTAGCGTATTTTGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463794" ref_strand="+" ref_description="SGN-E463794 [cPRO-16-C9]">
      <seq>aacgcagcctccctcttccttttcccccttcccctttccccttagtttcacagatctttctgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaaattccaccgtgtgtcatgcctcagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgagagaatctgtagnatctttttgttctttgtggtttggaggtataccaagattctagaggattttgggattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110435" stop="112659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110732" g_stop="110936" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="303" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112359" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="569" r_length="197" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E463794" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110732" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTAT</genome_strand>
        <mrna_strand>AACGCAGCCTCCCTCTT-CCT--TTTCCCCCTT-CCCCTTTCCCCTTAGTTTCACAGATCTTTCTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAATTCCACCGTGTGTCATGCCTCAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGNATCTTTTTGTTCTTTGTGGTTTGGAGGTATACCAAGATTCTAGAGGATTTTGGGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720040" ref_strand="+" ref_description="SGN-E720040 [FC09CF01]">
      <seq>tggcggccaatcggccgaattggttccctgtttttccccttccccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgatnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110447" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110747" g_stop="110936" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="213" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="315" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="384" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="667" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="711"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E720040" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110747" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>TTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454015" ref_strand="+" ref_description="SGN-E454015 [cSTS-21-J22]">
      <seq>cttccttttcccccttcccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccaccattgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaaattccaccgtgtgtcatgcctcagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttattgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagcgtattttggtattatctagttttgttggtttatgatttcaccagaagtttgaggccaaatacattatgatttattcatnnnnnanaaaaannnanaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110454" stop="112726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110750" g_stop="110936" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="289" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="358" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112432" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="624" r_length="266" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E454015" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110750" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCA</genome_strand>
        <mrna_strand>CTTCCTTTTCCCCCTTCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCATTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAATTCCACCGTGTGTCATGCCTCAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTATTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGCGTATTTTGGTATTATCTAGTTTTGTTGG-TTTATGATTTCACCAGAAG--T-TTGAGGCCAAATACATTATGATTTATTCATNNNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410671" ref_strand="+" ref_description="SGN-E410671 [PPI-17-P13]">
      <seq>cccccttcccctttccccttagtttcacagatctttctgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaaattccaccgtgtgtcatgcctcagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagagtattttggtattatctagttttgttggttttatcatttctccagaagtttgaggccaaatacattatgatttattcatagatcaatttcccttgataattttgcaatatctgaatgagttcacttgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110459" stop="112778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110759" g_stop="110936" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="349" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112478" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="663" r_length="314" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E410671" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110759" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGC-TTATCTGAATGAGTTCACTAGCTGAT</genome_strand>
        <mrna_strand>CCCCCTTCCCCTTTCCCCTTAGTTTCACAGATCTTTCTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAATTCCACCGTGTGTCATGCCTCAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTCCCTTGATAATTTTGCAATATCTGAATGAGTTCACTTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571551" ref_strand="+" ref_description="SGN-E571551 [14516]">
      <seq>cctcgtgccgctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcatcaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttacccgggatgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagcgtatatggtattatctagttttggtggttttatcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110460" stop="112684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110759" g_stop="110936" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="349" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112384" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="571" r_length="222" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E571551" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110759" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTT-GCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTC</genome_strand>
        <mrna_strand>CCTCGTGCCGCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTACCCGGGATGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGCGTA-TATGGTATTATCTAGTTTTGGTGGTTTTATCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746369" ref_strand="+" ref_description="SGN-E746369 [GI|47104275]">
      <seq>ccttccccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110461" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110761" g_stop="110936" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="278" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="347" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112442" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="627" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="645"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E746369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110761" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</genome_strand>
        <mrna_strand>CCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304988" ref_strand="+" ref_description="SGN-E304988 [cLEX-10-L18]">
      <seq>cttccccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110462" stop="112730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110762" g_stop="110936" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="277" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="346" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112430" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="614" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E304988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110762" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGAT</genome_strand>
        <mrna_strand>CTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334743" ref_strand="+" ref_description="SGN-E334743 [cTOE-3-O15]">
      <seq>ttccccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctctaaacaatttagaaaatgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110463" stop="112555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110763" g_stop="110936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="276" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="345" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112255" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="438" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E334743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110763" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGC</genome_strand>
        <mrna_strand>TTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTCTAAACAATTTAGAAAATGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690804" ref_strand="+" ref_description="SGN-E690804 [LH_Ea04H10]">
      <seq>tcagtaaagcccttagttccaagatctttgtgtaatcaagcattgtgactaccgggaagaaatcgaagaggactcatgagagcatcaacaacagattggctctcgtaatgaagagtggaaagtatactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaataatgttgatctaggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgaccctggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatttagaaaatgttttgcggggctgctataaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtgttatctagtttttgttggttttatcatttctccatgtttgttaaggccaaatacattatgatttattcatagatcaattttccttgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110474" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110765" g_stop="110936" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="342" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="624" r_length="282" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E690804" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110765" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAG-TTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>TCAGTAAAGCCCTTAGTTCCA-AGATCTTTGTGTAATCAAGCATTGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTATACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGATCTAGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCTG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTATAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTGTTATCTAGTTTTTGTTGGTTTTATCATTTCTCC--ATGTTTGTTAAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720707" ref_strand="+" ref_description="SGN-E720707 [FC11CD10]">
      <seq>ccccctttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccaacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110465" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110765" g_stop="110936" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="274" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="343" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="626" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E720707" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110765" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>CCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCAACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602064" ref_strand="+" ref_description="SGN-E602064 [55118]">
      <seq>cccctttccccttagtttcacagatctttctgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaaattccaccgtgtgtcatgcctcacgcatcattgacccaggtgattccgacattatcaagtctctgcctgcgagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagagtattttggtattatctagttttgttggttttatcatttctccagaagtttgaggccaaataccttatgatttattcatagatcaattttcccttgataattttcgcaatatctgaatgagttcacttggttgataaaacaaaaaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110466" stop="112784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110766" g_stop="110936" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="343" r_length="70" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.814" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112472" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="654" r_length="311" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E602064" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110766" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGA-GCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTG-GAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTT-CCTTGATAATTTT-GC-TTATCTGAATGAGTTCACTA</genome_strand>
        <mrna_strand>CCCCTTTCCCCTTAGTTTCACAGATCTTTCTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAATTCCACCGTGTGTCATGCCTCACGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGCGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAAATACCTTATGATTTATTCATAGATCAATTTTCCCTTGATAATTTTCGCAATATCTGAATGAGTTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463918" ref_strand="+" ref_description="SGN-E463918 [cPRO-16-I24]">
      <seq>cccctttccccttagtttcacagatctttctgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaaattccaccgtgtgtcatgcctcagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagagtattttggtattatctagttttgttggttttatcatttctccagaagtttgaggccaaatacattatgatttattcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110466" stop="112733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110766" g_stop="110936" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="342" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112428" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="605" r_length="263" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="619"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E463918" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110766" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAG</genome_strand>
        <mrna_strand>CCCCTTTCCCCTTAGTTTCACAGATCTTTCTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAATTCCACCGTGTGTCATGCCTCAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAAATACATTATGATTTATTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340955" ref_strand="+" ref_description="SGN-E340955 [cTOF-5-M12]">
      <seq>tttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatggtttgttgaggccaaatacattatgatttattcatagatcaattttccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110470" stop="112743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110770" g_stop="110936" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="269" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="338" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112443" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="620" r_length="282" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E340955" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110770" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATAT-GTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGA</genome_strand>
        <mrna_strand>TTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694644" ref_strand="+" ref_description="SGN-E694644 [LH_Ea04H10](-)">
      <seq>tttccccttagttccacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcatcaacaacagattggctctcgtaatgaagagtggaaagtatactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccccctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaataatgttgatctaggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgaccctggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatttagaaaatgttttgcggggctgctataacccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtgttatctagtttagggtggttttatcatttctccatgtttgttaaggccctatacgttatgatttattcatagatcaattttccttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110470" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110770" g_stop="110936" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="269" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="338" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112441" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="616" r_length="278" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="634"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E694644" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110770" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTT-TGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTT</genome_strand>
        <mrna_strand>TTTCCCCTTAGTTCCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTATACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCCCCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGATCTAGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCTG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTATAACCCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTGTTATCTAGTTTAGGGTGGTTTTATCATTTCTCC--ATGTTTGTTAAGGCCCTATACGTTATGATTTATTCATAGATCAATTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325552" ref_strand="+" ref_description="SGN-E325552 [cTOC-15-E12]">
      <seq>tttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaacctttttactgatgttgagagaatctgtagnatctttttggtctttgtgttttgggagtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110470" stop="112633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110770" g_stop="110936" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="269" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="338" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112333" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="509" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E325552" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110770" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACT</genome_strand>
        <mrna_strand>TTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCTTTTTACTGATGTTGAGAGAATCTGTAGNATCTTTTTGGTCTTTGTGTTTTGGGAGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286907" ref_strand="+" ref_description="SGN-E286907 [cLES-14-P4]">
      <seq>ttccccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110471" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110771" g_stop="110936" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="268" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="337" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112442" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="617" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="618" polyA_stop="627"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E286907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110771" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</genome_strand>
        <mrna_strand>TTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282540" ref_strand="+" ref_description="SGN-E282540 [cLER-18-H9]">
      <seq>cccttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggngctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110474" stop="112615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110774" g_stop="110936" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="265" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="334" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112315" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="487" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E282540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110774" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTT</genome_strand>
        <mrna_strand>CCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGNGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303467" ref_strand="+" ref_description="SGN-E303467 [cLEX-2-K3]">
      <seq>ctcgtgccgaattcggcacgaggcttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttatgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgataattttggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110476" stop="112755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110776" g_stop="110936" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="184" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="286" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="355" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112464" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="657" r_length="302" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E303467" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110776" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGCTTATCTGAATGA</genome_strand>
        <mrna_strand>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTATGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691225" ref_strand="+" ref_description="SGN-E691225 [LH_Ea05I23]">
      <seq>tcctcgtgccgaattcggcacgaggcttagttccacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcatcaacaacagattggctctcgtaatgaagagtggaaagtatactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaataatgttgatctaggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgaccctggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatttagaaaatgttttgcggggctgctataaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtgttatctagtttttgttggttttatcatttctccatgtttgttaaggccaaatacattatgatttattcatagatcaattttccttgaannnaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110476" stop="112743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110776" g_stop="110936" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="186" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="288" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="357" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112442" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="636" r_length="279" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="654"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E691225" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110776" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAG-TTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</genome_strand>
        <mrna_strand>CTTAGTTCCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTATACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGATCTAGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCTG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTATAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTGTTATCTAGTTTTTGTTGGTTTTATCATTTCTCC--ATGTTTGTTAAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691226" ref_strand="+" ref_description="SGN-E691226 [LH_Ea05I24]">
      <seq>cgtctcgtgccgaattcggcacgaggcttagttccacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcatcaacaacagattggctctcgtaatgaagagtggaaagtatactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaataatgttgatctaggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgaccctggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatttagaaaatgttttgcggggctgctataaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtgttatctagtttttgttggttttatcatttctccatgtttgttaaggccaaatacattatgatttattcatagatcaattttccttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110476" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110776" g_stop="110936" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="187" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="289" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="358" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112442" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="637" r_length="279" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="655"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E691226" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110776" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAG-TTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</genome_strand>
        <mrna_strand>CTTAGTTCCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTATACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGATCTAGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCTG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTATAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTGTTATCTAGTTTTTGTTGGTTTTATCATTTCTCC--ATGTTTGTTAAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695066" ref_strand="+" ref_description="SGN-E695066 [LH_Ea05I24](-)">
      <seq>cctcgtgccgaattcggcacgaggcttagttccacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcatcaacaacagattggctctcgtaatgaagagtggaaagtatactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccccctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttccccatttcaatggaaataatgttgatctaggtacagcatgtggaaagttcccccgtgtgtcatgcctgagcatcattgaccctggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatttagaaaatgttttgcggggctgctataaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatcctgagattctagagtattttggtgttatctagtttttgttggaggtatcatttctccatgtttgttaaggccaaatcccttaaagggtattcatagatcaattttcctgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110476" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110776" g_stop="110936" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="185" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="287" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="356" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112440" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="633" r_length="277" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="652"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E695066" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110776" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAG-TTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCT</genome_strand>
        <mrna_strand>CTTAGTTCCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTATACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCCCCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCCCCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGATCTAGGTACAGCATGTGGAAAGTTCCCCCGTGTGTCATGCCTGAGCATCATTGACCCTG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTATAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATCCTGAGATTCTAGAGTATTTTGGTGTTATCTAGTTTTTGTTGGAGGTATCATTTCTCC--ATGTTTGTTAAGGCCAAATCCCTTAAAGGGTATTCATAGATCAATTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695065" ref_strand="+" ref_description="SGN-E695065 [LH_Ea05I23](-)">
      <seq>cctcgtgccgaattcggcacgaggcttagttccacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcatcaacaacagattggctctcgtaatgaagagtggaaagtatactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccccctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttccccatttcaatggaaataatgttgatctaggtacagcatgtggaaagttcccccgtgtgtcatgcctgagcatcattgaccctggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatttagaaaatgttttgcggggctgctataaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtgttatctagtttttgttggttttatcatttctccatgtttgttaaggccaaatccattaagagttattcatagatcaattttcctgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110476" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110776" g_stop="110936" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="185" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="287" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="356" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112440" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="633" r_length="277" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="658"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E695065" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110776" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAG-TTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCT</genome_strand>
        <mrna_strand>CTTAGTTCCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTATACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCCCCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCCCCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGATCTAGGTACAGCATGTGGAAAGTTCCCCCGTGTGTCATGCCTGAGCATCATTGACCCTG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTATAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTGTTATCTAGTTTTTGTTGGTTTTATCATTTCTCC--ATGTTTGTTAAGGCCAAATCCATTAAGAGTTATTCATAGATCAATTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308381" ref_strand="+" ref_description="SGN-E308381 [cLEY-25-L14]">
      <seq>ttattttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttaaaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110477" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110777" g_stop="110936" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="331" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="614" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="627"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E308381" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110777" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>TTATTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAAAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348135" ref_strand="+" ref_description="SGN-E348135 [cTOF-27-I7]">
      <seq>ttagtttcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggngctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110477" stop="112731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110777" g_stop="110936" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="331" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112431" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="600" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E348135" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110777" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATC</genome_strand>
        <mrna_strand>TTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGNGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228172" ref_strand="+" ref_description="SGN-E228172 [cLED-2-G7]">
      <seq>ttagtttcacagatctttgtgtgatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatgaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaattcataaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgacattctagagtattttggtattatctagctttgttggttctatcatttctccatatgtttgttgaggccaaatacattatgatttattcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110477" stop="112728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110777" g_stop="110936" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="331" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112428" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="597" r_length="266" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E228172" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110777" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAG</genome_strand>
        <mrna_strand>TTAGTTTCACAGATCTTTGTGTGATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATGAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTCATAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGACATTCTAGAGTATTTTGGTATTATCTAGCTTTGTTGGTTCTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578018" ref_strand="-" ref_description="SGN-E578018 [LE08CH05]">
      <seq>aaatatccttgagaccaatcacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgataattttgcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110483" stop="112755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110783" g_stop="110936" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="172" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="274" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="343" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112462" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="643" r_length="300" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E578018" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578018" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110783" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGCTTATCTGAAT</genome_strand>
        <mrna_strand>TCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297329" ref_strand="+" ref_description="SGN-E297329 [cLET-29-N14]">
      <seq>cagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgnagnatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110486" stop="112695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110786" g_stop="110936" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="253" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="322" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112395" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="555" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E297329" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110786" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTT</genome_strand>
        <mrna_strand>CAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGNAGNATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714572" ref_strand="+" ref_description="SGN-E714572 [FB11DC09]">
      <seq>gatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110488" stop="112677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110788" g_stop="110936" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="251" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="320" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112376" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="534" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="545"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E714572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110788" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTT</genome_strand>
        <mrna_strand>GATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604024" ref_strand="+" ref_description="SGN-E604024 [67214]">
      <seq>tctttctgtaatcaagaatggtgactaccgggaagaaatcgaagaggacccatgagagcattaacaacagattggctctcgtaatgaagagtggcaagtacactcttggttacaagactgtgctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggaacagcatgtggaaaattccaccgtgtgtcatgcctcagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgtcgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagagtattttggtattatctagtttggttggttttatcatttctccagaagtttgaggccaaatacattatgatttattcatagatcaatttcccttgataaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110490" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110790" g_stop="110936" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="249" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="318" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="598" r_length="280" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="623"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E604024" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110790" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>TCTTTCTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACCCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGCAAGTACACTCTTGGTTACAAGACTGTGCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGAACAGCATGTGGAAAATTCCACCGTGTGTCATGCCTCAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTCGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGAGTATTTTGGTATTATCTAGTTTGGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTCCCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345702" ref_strand="+" ref_description="SGN-E345702 [cTOF-18-L23]">
      <seq>gctcatgagatcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgntnnanaanaaaaaaaaaaaanaaanannaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110538" stop="112744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110837" g_stop="110936" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="202" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="271" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="554" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="576"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E345702" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110837" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>GCTCATGAGATCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGNTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347906" ref_strand="+" ref_description="SGN-E347906 [cTOF-31-I20]">
      <seq>tcatgagagcattaacaacagattggctctcgtaatgaagagtggaaagtacactcttggttacaagactgttctcaagactctcaaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgatnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110539" stop="112744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110839" g_stop="110936" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="201" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="270" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="553" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="593"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E347906" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110839" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTC-AGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>TCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351378" ref_strand="+" ref_description="SGN-E351378 [cTOS-12-I2]">
      <seq>tggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110581" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110881" g_stop="110936" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="158" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="227" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112447" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="512" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E351378" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110881" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAAT</genome_strand>
        <mrna_strand>TGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356510" ref_strand="+" ref_description="SGN-E356510 [cTOS-21-E13]">
      <seq>tggaaagtacactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110581" stop="112743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110881" g_stop="110936" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="158" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="227" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112443" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="508" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E356510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110881" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGA</genome_strand>
        <mrna_strand>TGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295042" ref_strand="+" ref_description="SGN-E295042 [cLET-40-K17]">
      <seq>gacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110736" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110926" g_stop="110936" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="465" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="476"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E295042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110926" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>GACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296898" ref_strand="+" ref_description="SGN-E296898 [cLET-26-K7]">
      <seq>gacctcaaaagggaagttgatattgatatcaaacaactgcccacctttgaggaaatctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcatagatcaattttccttgataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110736" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110926" g_stop="110936" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112445" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="465" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="476"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E296898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110926" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</genome_strand>
        <mrna_strand>GACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227619" ref_strand="+" ref_description="SGN-E227619 [cLEL-30-H9](-)">
      <seq>tctgagattgagtattatgctatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110782" stop="112733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111082" g_stop="111139" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="127" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112163" g_stop="112424" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="389" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="406"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E227619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111082" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTC</genome_strand>
        <mrna_strand>TCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618581" ref_strand="+" ref_description="SGN-E618581 [69261]">
      <seq>agattgagtattatgctatgcttgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttgggaacagcatgtggaaaattccaccgtgtgtcatgcctcagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttgccgggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagagtattttggtattatctagttttgttggttttatcatttctccagaagtttgaggccaaatacattatgatttattcatagatcaatttcccttgataattttgcaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110786" stop="112752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111086" g_stop="111139" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="124" r_length="70" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112163" g_stop="112462" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="420" r_length="296" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E618581" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111086" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTT-GGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGCTTATCTGAAT</genome_strand>
        <mrna_strand>AGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGGAACAGCATGTGGAAAATTCCACCGTGTGTCATGCCTCAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTGCCGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTCCCTTGATAATTTTGC-AATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227259" ref_strand="+" ref_description="SGN-E227259 [cLEL-30-H9](-)">
      <seq>gattgagtattatgctaatgctcgctaaagttggtgttcaccatttcaatggaaacaatgttgatcttggtacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttgatgatctagtagtcattctctttaaacaatttagaaaatgttttgcggggctgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatactgagattctagagtattttggtattatctagttttgttggttttatcatttctccatatgtttgttgaggccaaatacattatgatttattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110787" stop="112733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111087" g_stop="111139" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="123" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112163" g_stop="112424" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="385" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="402"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E227259" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111087" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAGTATTATGCT-ATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTC</genome_strand>
        <mrna_strand>GATTGAGTATTATGCTAATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609896" ref_strand="+" ref_description="SGN-E609896 [46389]">
      <seq>tgatcttggaacagcatgtggaaagttccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgnttacccgggatgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagtattctagcggtattttggtattatctagttttgttggttttatcatttctccagaagtttgaggccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="111695" stop="112696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111995" g_stop="112056" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112163" g_stop="112406" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="305" r_length="243" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E609896" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111995" e_stop="112056"/>
          <exon e_start="112163" e_stop="112406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAG-ATTCTAG-AGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAA</genome_strand>
        <mrna_strand>TGATCTTGGAACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGNTTACCCGGGATGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGTATTCTAGCGGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594988" ref_strand="+" ref_description="SGN-E594988 [38252]">
      <seq>cttggaacagcatgtggaaagtccaccgtgtgtcatgcctgagcatcattgacccaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttacccgggatgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagcgtattttggtattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="111699" stop="112658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111999" g_stop="112056" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112163" g_stop="112357" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="253" r_length="196" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="254" polyA_stop="275"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E594988" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111999" e_stop="112056"/>
          <exon e_start="112163" e_stop="112357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTT-GCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATT</genome_strand>
        <mrna_strand>CTTGGAACAGCATGTGGAAAG-TCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTACCCGGGATGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGCGTATTTTGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413243" ref_strand="-" ref_description="SGN-E413243 [STM-17-H11]">
      <seq>gagcatcattgacncaggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatctagaaaatgttttacccgggatgctctaaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttataccaagattctagcgtattttggtattatctagttttgttggttttatcatttctccagaagtttgaggccaaatacattatgatttattcatagatcaatttccctcgataattttgcatatctgaatgagttcacttgctgataaacaattttgttgagccaagtgtctcttccccacaaaggtagtatgtttacacctcaccttctccgtactccacttgtgagattatattgggtaagctgaatgagttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="111860" stop="112891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112040" g_stop="112056" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112163" g_stop="112578" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="422" r_length="405" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E413243" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413243" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112040" e_stop="112056"/>
          <exon e_start="112163" e_stop="112578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTT-GCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGCTTATCTGAATGAGTTCACTAGCTGATATACAATTTTGTTGAGCCAAGTCTCTCTGCCCCACAAAGGTACGGGAAAGTATTAGTGCACCTCTCACCTTCTCCGTACTCCACTTGTGAGATTATATTG</genome_strand>
        <mrna_strand>GAGCATCATTGACNCAG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATCTAGAAAATGTTTTACCCGGGATGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACCAAGATTCTAGCGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCAGAAG--T-TTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTCCCTCGATAATTTTGCATATCTGAATGAGTTCACTTGCTGATAAACAATTTTGTTGAGCCAAGTGTCTCTTCCCCACAAAGGTA---GTATGT-TTA---CA-C-CTCACCTTCTCCGTACTCCACTTGTGAGATTATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473855" ref_strand="+" ref_description="SGN-E473855 [cSTB-34-A5]">
      <seq>gatttttcttccttgtaaagattcacgttaaactttccaatttgatttttttttttttttctacttttctttctttcaacatcaagcaatttatagcacccaagaaacaaacaagttcctcactctttcagctgacccatagtttttgattgattcatcttctctgattcttttattttctcatatttccatttcttgaaacttttcttagaaattcccacaaaatatgattcatttctgaaatcaatcactttgttttcttggttatttgggtattgagggattcgaattttccactttctttccaaagttgtaatcttttcagtgtattgctagttggggtttttcttgatttgggttggaaaaaagggggtgaatcaaaaagttgggttttgagattttcttggatttgggtgttgtgggtattggttaaaattgagtcttttgttcatttaagtttttgatctgttggcgtattcttggaagtttgtggttgttgtttggtggattgatgagagtttgaagtggattggtaattgtgagagattgtttgaatggctttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="128411" stop="129578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128710" g_stop="129278" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E473855" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128710" e_stop="129278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTCTTCC-TGTAAAGATTCACGTTAAACTTTCCAATTTGATCTCCTCTTCTTCTTCTTTTTTCTACTTTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGG-GGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGTTAAAATTGAGTCTTTTGTTCATTTAAGTTTTTGATCTGTTGGGGGTATTCTTGGAAGTTTGTGGTTGTTGTTTGGTGAATTGATGAGAGTTTGAAGTGGATTGGTGATTGTGAGAGATTGTTTGAATGGCTTTAAA</genome_strand>
        <mrna_strand>GATTTTTCTTCCTTGTAAAGATTCACGTTAAACTTTCCAATTTGATTTTTTTTTTTTTTTCTACTTT-T-C-TTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTCCTCACTCTTTCAGCTGACCCATAG--TTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAACTTTTCTTAGAAATTCCCACAAAATATGATTCATTTCTGAAATCAATCACTTTGTTTTCTTGGTTATTTGGGTATTGAGGGATTCGAATTTTCCACTTTCTTTCCAAAGTTGTAATCTTTTCAGTGTATTGCTAGTTGGGGTTTTTCTTGATTTGGGTTGGAAAAAAGGGGGTGAATCAAAAAGTTGGGTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGTTAAAATTGAGTCTTTTGTTCATTTAAGTTTTTGATCTGTT-GGCGTATTCTTGGAAGTTTGTGGTTGTTGTTTGGTGGATTGATGAGAGTTTGAAGTGGATTGGTAATTGTGAGAGATTGTTTGAATGGCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306903" ref_strand="+" ref_description="SGN-E306903 [cLEY-11-I11]">
      <seq>tttttctttctgtaaagattcacgttaaactttccaatttgatctcctcttcttcttcttttttctacttttctttcaacatcaagcaatttatagcacccaagaaacaaacaagtttctcactctttaagctgacccatagattttttgattgattcatcttctctgattcttttattttctcatatttccatttcttgaagctcttctaagaaaaacccacaaaaaatgattcatttctgaaatcaatcactctgttttcttggttatttgggtattgagggatttgaattttttattttctttccaaagttgcaatcttttcagtgtattgttatttgggggttttcttgatttgggttggaaaaaaggggtgaatcaaaaagttggtttttgagattttcttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="128412" stop="129423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128712" g_stop="129123" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E306903" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128712" e_stop="129123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCCTGTAAAGATTCACGTTAAACTTTCCAATTTGATCTCCTCTTCTTCTTCTTTTTTCTACTTTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTT</genome_strand>
        <mrna_strand>TTTTTCTTTCTGTAAAGATTCACGTTAAACTTTCCAATTTGATCTCCTCTTCTTCTTCTTTTTTCTACTTTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370308" ref_strand="+" ref_description="SGN-E370308 [TUS-28-I7]">
      <seq>tttctttcaacatcaagcaatttatagcacccaagaaacaaacaagtttctcactctttaagctgacccatagattttttgattgattcatcttctctgattcttttattttctcatatttccatttcttgaagctcttctaagaaaaacccacaaaaaatgattcatttctgaaatcaatcactctgttttcttggttatttgggtattgagggatttgaattttttattttctttccaaagttgcaatcttttcagtgtattgttatttgggggttttcttgatttgggttggaaaaaaggggtgaatcaaaaagttggtttttgagattttcttggatttgggtgttgtgggtattggataaaattgagtcttttgttcatttaagattttgatctgccgggggcattcttggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="128481" stop="129499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128781" g_stop="129199" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E370308" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128781" e_stop="129199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGTTAAAATTGAGTCTTTTGTTCATTTAAGTTTTTGATCTGTTGGGGGTATTCTTGGAAG</genome_strand>
        <mrna_strand>TTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGATAAAATTGAGTCTTTTGTTCATTTAAGATTTTGATCTGCCGGGGGCATTCTTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270864" ref_strand="+" ref_description="SGN-E270864 [cLEM-6-O4]">
      <seq>tttctttcaacatcaagcaatttatagcacccaagaaacaaacaagtttctcactctttaagctgacccatagattttttgattgattcatcttctctgattcttttattttctcatatttccatttcttgaagctcttctaagaaaaacccacaaaaaatgattcatttctgaaatcaatcactctgttttcttggttatttgggtattgagggatttgaattttttattttctttccaaagttgcaatcttttcagtgtattgttatttgggggttttcttgatttgggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="128481" stop="129374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128781" g_stop="129074" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-E270864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128781" e_stop="129074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTG</genome_strand>
        <mrna_strand>TTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211110" ref_strand="+" ref_description="SGN-E211110 [cLEC-69-D8]">
      <seq>tgtttcaaaaatatttgtaatctctctcttcttctcctcatccatctcttcatttttggttaattcgtcaggtcatcagtatcatgtcaactcatttggaaatgcctagtagcgggaagctaaccgatattcaaagggatgagttgctattgaagttaattgtagaggttcagaatataaaaactcatgtcagagctcttgagttgcagaactcacagctgccaactaatttaccagcaaaaggaaaaaaagaatcagtccgagttgtttcgcatgaaggactagagaccggagaagatgttcaacagcttgaccaaccaactgaaaaaagaggagttgtggcgaaagggcctctgcagacacctcaaccaccactgagtagaacttccctaaagagaaccctctgtgaaaatccaggtacaacagggggaaagaaggtcaaaatggagttaccagtttttaatggaaagctcaatccaacaatatttgcagattggctatcagctatggaggaatattttgacttgtatgacttgtcagatgatcgaagggttagatttgctaaaatgaagctaactactcttgcaaaagaggtggtgaagtccacaagtaagagttctaatgtattataaaacaatctaagcttaatttaccaatattgcgaataacttaagatttcctttatatcattccactgtacttgcacattcttacgaataaacagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="131376" stop="130048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131076" g_stop="130348" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E211110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131076" e_stop="130348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAAAAATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGAATAACTTAAGATTTCCTTTATATCATTCCACTGTACTTGCACATTCTTACGAATAAACAGAAAGT</genome_strand>
        <mrna_strand>TGTTTCAAAAATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGAATAACTTAAGATTTCCTTTATATCATTCCACTGTACTTGCACATTCTTACGAATAAACAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539441" ref_strand="+" ref_description="SGN-E539441 [TUS-59-D6]">
      <seq>atatttgtaatctctctcttcttctcctcatccatctcttcatttttggttaattcgtcaggtcatcagtatcatgtcaactcatttggaaatgcctagtagcgggaagctaaccgatattcaaagggatgagttgctattgaagttaattgtagaggttcagaatataaaaactcatgtcagagctcttgagttgcagaactcacagctgccaactaatttaccagcaaaaggaaaaaaagaatcagtccgagttgtttcgcatgaaggactagagaccggagaagatgttcaacagcttgaccaaccaactgaaaaaagaggagttgtggcgaaagggcctctgcagacacctcaaccaccactgagtagaacttccctaaagagaaccctctgtgaaaatccaggtacaacagggggaaagaaggtcaaaatggagttaccagtttttaatggaaagctcaatccaacaatatttgcagattggctatcagctatggaggaatattttgacttgtatgacttgtcagatgatcgaagggttagatttgctaaaatgaagctaactactcttgcaaaagaggtggtgaagtccacaagtaagagttctaatgtattataaaacaatctaagcttaatttaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="131366" stop="130119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131066" g_stop="130413" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E539441" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131066" e_stop="130413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGA</genome_strand>
        <mrna_strand>ATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284290" ref_strand="+" ref_description="SGN-E284290 [cLER-16-P3]">
      <seq>tatttgtaatctctctcttcttctcctcatccatctcttcatttttggttaattcgtcaggtcatcagtatcatgtcaactcatttggaaatgcctagtagcgggaagctaaccgatattcaaagggatgagttgctattgaagttaattgtagaggttcagaatataaaaactcatgtcagagctcttgagttgcagaactcacagctgccaactaatttaccagcaaaaggaaaaaaagaatcagtccgagttgtttcgcatgaaggactagagaccggagaagatgttcaacagcttgaccaaccaactgaaaaaagaggagttgtggcgaaagggcctctgcagacacctcaaccaccactgagtagaacttccctaaagagaaccctctgtgaaaatccaggtacaacagggggaaagaaggtcaaaatggagttaccagtttttaatggaaagctcaatccaacaatatttgcagattggctatcagctatggaggaatattttgacttgtatgacttgtcagatgatcgaagggttagatttgctaaaatgaagctaactactcttgcaaaagaggtggtgaagtccacaagtaagagttctaatgtattataaaacaatctaagcttaatttaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="131365" stop="130119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131065" g_stop="130413" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E284290" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131065" e_stop="130413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGA</genome_strand>
        <mrna_strand>TATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539439" ref_strand="+" ref_description="SGN-E539439 [TUS-59-D6](-)">
      <seq>tcctcatcccatctctccatttttggttaattcgtcaggtcatcagtatcatgtcacctcatttggaaatgcctagtagcgggaagctacccgatattcaaagggatgagttgctattgaagttaattgtagaggttcagaatataaaaactcatgtcagagctcttgagttgcagaactcacagctgccaactaatttaccagcaaaaggaaaaaaagaatcagtccgagttgtttcgcatgaaggactagagaccggagaagatgttcaacagcttgaccaaccaactgaaaaaagaggagttgtggcgaaagggcctctgcagacacctcaaccaccactgagtagaacttccctaaagagaaccctctgtgaaaatccaggtacaacagggggaaagaaggtcaaaatggagttaccagtttttaatggaaagctcaatccaacaatatttgcagattggctatcagctatggaggaatattttgacttgtatgacttgtcagatgatcgaagggttagatttgctaaaatgaagctaactactcttgcaaaagaggtggtgaagtccacaagtaagagttctaatgtattataaaacaatctaagcttaatttaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="131342" stop="130119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131042" g_stop="130413" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-E539439" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131042" e_stop="130413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCAT-CCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGA</genome_strand>
        <mrna_strand>TCCTCATCCCATCTCTCCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCACCTCATTTGGAAATGCCTAGTAGCGGGAAGCTACCCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>119</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3664" PGL_stop="12"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3602" e_stop="3485"/>
            <exon e_start="3118" e_stop="3114"/>
            <exon e_start="2855" e_stop="2563"/>
            <exon e_start="2123" e_stop="1985"/>
            <exon e_start="1704" e_stop="1583"/>
            <exon e_start="1404" e_stop="1201"/>
            <exon e_start="952" e_stop="893"/>
            <exon e_start="41" e_stop="12"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="0.839"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.911"/>
          <exon-intron don_prob="0.999" acc_prob="0.783" e_score="0.942"/>
          <exon-intron don_prob="0.990" acc_prob="0.310" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.839">
            <gDNA_exon_boundary e_start="3602" e_stop="3485" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="3484" i_stop="3119" i_length="366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3118" e_stop="3114" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3113" i_stop="2856" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="2855" e_stop="2563" e_length="293"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2562" i_stop="2124" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="0.942">
            <gDNA_exon_boundary e_start="2123" e_stop="1985" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.783">
            <gDNA_intron_boundary i_start="1984" i_stop="1705" i_length="280"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1704" e_stop="1583" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.310">
            <gDNA_intron_boundary i_start="1582" i_stop="1405" i_length="178"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="1404" e_stop="1201" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1200" i_stop="953" i_length="248"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="952" e_stop="893" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="892" i_stop="42" i_length="851"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="41" e_stop="12" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3602" stop="3485"/>
              <exon start="3118" stop="3114"/>
              <exon start="2855" stop="2563"/>
              <exon start="2123" stop="1985"/>
              <exon start="1704" stop="1583"/>
              <exon start="1404" stop="1350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2064" stop="1985"/>
              <exon start="1704" stop="1583"/>
              <exon start="1404" stop="1201"/>
              <exon start="952" stop="893"/>
              <exon start="41" stop="12"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAG : AGAGT : AGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACCCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAG : GTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAGAGCTTCAGTGTCATGGAAGTGAAGTGTGTCTTCAACGTGTTTTGAGGGCGTGTCTGGAGGCTGGAGCAAAGCTTGCGGAACCAG : GTGAATTCACTCTGCGCGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTCGAAAAGTTAATATCAGCAAAGTCAGTGGCTGCTGCAGATGCTGCATTGGCAGGAATAGAG : GGTGGGTTTTCTTCTTTGGTCAAATCACTAAGAACTCAGTGTATGGAGTTGCTAACTGAAATTGAAGCTCGTCTTGACTTCGATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAG : ATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAA : ACTGATAGAGCAATAGTTACAAATATTGCT</gDNA_template>
            <first_frame> A  L  S  I  C  P  R  L  S  I  P  I  H  T  T  L  S  S  L  F  P  L  S  S  S  S  S  S  Q  P  T  A  K  H  H  A  I  S  K   : E  S  :  R  V  L  W  C  *  N  K  T  R  G  Y  Q  C  L  V  Q  *  A  L  L  T  Q  P  L  I  L  A  P  L  L  L  L  S  L  L  W  V  V  Q  Q  L  Q  L  E  L  F  G  Y  L  V  L  L  Q  C  L  *  L  V  V  Y  F  I  P  R  *  K  R  R  K  G  V  L  R  S  G  D  R  V  V  M  L  *  S  T  V  L  F  P  T  L  M  G  M  *  L  M  R :   F  W  W  F  L  C  W  L  Q  S  L  T  L  E  K  M  *  *  S  F  S  V  M  E  V  K  C  V  F  N  V  F  *  G  R  V  W  R  L  E  Q  S  L  R  N  Q  :  V  N  S  L  C  A  P  S  *  M  V  V  W  I  F  L  K  L  R  M  S  K  S  *  Y  Q  Q  S  Q  W  L  L  Q  M  L  H  W  Q  E  *  R :   V  G  F  L  L  W  S  N  H  *  E  L  S  V  W  S  C  *  L  K  L  K  L  V  L  T  S  M  T  R  C  H  P  L  I  *  I  L  L  W  T  K  Y  M  G  C  C  M  I  W  I  M  R  W  K  L  P  T  M  T  S  F  C  S  Q  D  Y  R :   L  Q  L  L  V  D  L  M  L  G  N  Q  A  F  L  M  H  G  A  K :   L  I  E  Q  *  L  Q  I  L   </first_frame>
            <second_frame>  P  C  L  S  A  Q  D  C  Q  S  Q  F  T  Q  H  S  L  L  S  S  L  F  L  L  L  L  L  L  N  L  L  L  S  I  M  L  F  L  K  :  R  V :   E  Y  S  G  A  E  T  R  R  E  V  I  S  V  W  Y  S  E  R  S  *  P  S  R  *  Y  *  H  H  C  C  Y  C  H  F  F  G  W  S  S  S  C  S  W  N  Y  S  V  I  W  S  F  C  S  A  Y  S  W  S  C  I  S  S  Q  G  E  K  E  E  K  E  F  F  G  V  E  T  E  *  S  C  C  R  V  R  F  C  F  R  L  S  W  E  C  D  *  *   : G  S  G  G  S  Y  A  G  S  K  V  L  H  *  R  R  C  D  R  A  S  V  S  W  K  *  S  V  S  S  T  C  F  E  G  V  S  G  G  W  S  K  A  C  G  T  R :   *  I  H  S  A  R  L  L  K  W  S  F  G  S  F  S  S  *  E  C  R  K  V  N  I  S  K  V  S  G  C  C  R  C  C  I  G  R  N  R   : G  W  V  F  F  F  G  Q  I  T  K  N  S  V  Y  G  V  A  N  *  N  *  S  S  S  *  L  R  *  R  D  A  T  P  *  S  E  S  Y  Y  G  Q  N  I  W  D  A  A  *  S  G  *  C  A  G  N  C  Q  L  *  Q  A  S  A  V  R  T  T   : D  C  N  Y  W  S  T  *  C  W  E  I  K  P  S  *  C  M  E  Q   : N  *  *  S  N  S  Y  K  Y  C  </second_frame>
            <third_frame>   L  V  Y  L  P  K  I  V  N  P  N  S  H  N  T  L  F  S  L  P  S  F  F  F  F  F  F  S  T  Y  C  *  A  S  C  Y  F  *  R :   E   : *  S  T  L  V  L  K  Q  D  E  R  L  S  V  S  G  T  V  S  A  L  D  P  A  V  N  T  S  T  I  A  A  I  V  T  S  L  G  G  P  A  A  A  V  G  I  I  R  L  S  G  P  S  A  V  P  I  V  G  R  V  F  H  P  K  V  K  K  K  K  R  S  S  S  E  W  R  P  S  S  H  V  V  E  Y  G  F  V  S  D  S  H  G  N  V  I  D  E  :  V  L  V  V  P  M  L  A  P  K  S  Y  T  R  E  D  V  I  E  L  Q  C  H  G  S  E  V  C  L  Q  R  V  L  R  A  C  L  E  A  G  A  K  L  A  E  P   : G  E  F  T  L  R  A  F  L  N  G  R  L  D  L  S  Q  A  E  N  V  E  K  L  I  S  A  K  S  V  A  A  A  D  A  A  L  A  G  I  E  :  G  G  F  S  S  L  V  K  S  L  R  T  Q  C  M  E  L  L  T  E  I  E  A  R  L  D  F  D  D  E  M  P  P  L  D  L  N  L  I  M  D  K  I  Y  G  M  L  H  D  L  D  N  A  L  E  T  A  N  Y  D  K  L  L  Q  S  G  L  Q  :  I  A  I  I  G  R  P  N  V  G  K  S  S  L  L  N  A  W  S  K  :  T  D  R  A  I  V  T  N  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2853" stop="2563"/>
                    <exon start="2123" stop="1985"/>
                    <exon start="1704" stop="1583"/>
                    <exon start="1404" stop="1201"/>
                    <exon start="952" stop="893"/>
                    <exon start="41" stop="12"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLVLKQDERLSVSGTVSALDPAVNTSTIAAIVTSLGGPAAAVGIIRLSGPSAVPIVGRVFHPKVKKKKRSSSEWRPSSHVVEYGFVSDSHGNVIDEVLVVPMLAPKSYTREDVIELQCHGSEVCLQRVLRACLEAGAKLAEPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIEGGFSSLVKSLRTQCMELLTEIEARLDFDDEMPPLDLNLIMDKIYGMLHDLDNALETANYDKLLQSGLQIAIIGRPNVGKSSLLNAWSKTDRAIVTNIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3664" e_stop="3485"/>
            <exon e_start="2855" e_stop="2563"/>
            <exon e_start="2123" e_stop="2069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3664" e_stop="3485" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3484" i_stop="2856" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="2855" e_stop="2563" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2562" i_stop="2124" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2123" e_stop="2069" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3664" stop="3485"/>
              <exon start="2855" stop="2563"/>
              <exon start="2123" stop="2069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTTTGCTACCTGCACTCCGCCATCTCTTCACCCACTTGCGTTCACCAGCCACATCCATAGCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAG : AGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACCCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAG : GTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAG</gDNA_template>
            <first_frame> W  L  C  Y  L  H  S  A  I  S  S  P  T  C  V  H  Q  P  H  P  *  P  C  L  S  A  Q  D  C  Q  S  Q  F  T  Q  H  S  L  L  S  S  L  F  L  L  L  L  L  L  N  L  L  L  S  I  M  L  F  L  K  :  R  V  L  W  C  *  N  K  T  R  G  Y  Q  C  L  V  Q  *  A  L  L  T  Q  P  L  I  L  A  P  L  L  L  L  S  L  L  W  V  V  Q  Q  L  Q  L  E  L  F  G  Y  L  V  L  L  Q  C  L  *  L  V  V  Y  F  I  P  R  *  K  R  R  K  G  V  L  R  S  G  D  R  V  V  M  L  *  S  T  V  L  F  P  T  L  M  G  M  *  L  M  R :   F  W  W  F  L  C  W  L  Q  S  L  T  L  E  K  M  *  * </first_frame>
            <second_frame>  G  F  A  T  C  T  P  P  S  L  H  P  L  A  F  T  S  H  I  H  S  L  V  Y  L  P  K  I  V  N  P  N  S  H  N  T  L  F  S  L  P  S  F  F  F  F  F  F  S  T  Y  C  *  A  S  C  Y  F  *  R :   E  Y  S  G  A  E  T  R  R  E  V  I  S  V  W  Y  S  E  R  S  *  P  S  R  *  Y  *  H  H  C  C  Y  C  H  F  F  G  W  S  S  S  C  S  W  N  Y  S  V  I  W  S  F  C  S  A  Y  S  W  S  C  I  S  S  Q  G  E  K  E  E  K  E  F  F  G  V  E  T  E  *  S  C  C  R  V  R  F  C  F  R  L  S  W  E  C  D  *  *   : G  S  G  G  S  Y  A  G  S  K  V  L  H  *  R  R  C  D   </second_frame>
            <third_frame>   A  L  L  P  A  L  R  H  L  F  T  H  L  R  S  P  A  T  S  I  A  L  S  I  C  P  R  L  S  I  P  I  H  T  T  L  S  S  L  F  P  L  S  S  S  S  S  S  Q  P  T  A  K  H  H  A  I  S  K   : E  S  T  L  V  L  K  Q  D  E  R  L  S  V  S  G  T  V  S  A  L  D  P  A  V  N  T  S  T  I  A  A  I  V  T  S  L  G  G  P  A  A  A  V  G  I  I  R  L  S  G  P  S  A  V  P  I  V  G  R  V  F  H  P  K  V  K  K  K  K  R  S  S  S  E  W  R  P  S  S  H  V  V  E  Y  G  F  V  S  D  S  H  G  N  V  I  D  E  :  V  L  V  V  P  M  L  A  P  K  S  Y  T  R  E  D  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3662" stop="3485"/>
                    <exon start="2855" stop="2563"/>
                    <exon start="2123" stop="2070"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLPALRHLFTHLRSPATSIALSICPRLSIPIHTTLSSLFPLSSSSSSQPTAKHHAISKESTLVLKQDERLSVSGTVSALDPAVNTSTIAAIVTSLGGPAAAVGIIRLSGPSAVPIVGRVFHPKVKKKKRSSSEWRPSSHVVEYGFVSDSHGNVIDEVLVVPMLAPKSYTREDVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25840" PGL_stop="26613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25840" e_stop="26170"/>
            <exon e_start="26287" e_stop="26335"/>
            <exon e_start="26410" e_stop="26613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25840" e_stop="26170" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="26171" i_stop="26286" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26287" e_stop="26335" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26336" i_stop="26409" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26410" e_stop="26613" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25840" stop="26170"/>
              <exon start="26287" stop="26335"/>
              <exon start="26410" stop="26570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="26170"/>
              <exon start="26287" stop="26335"/>
              <exon start="26410" stop="26613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAACAAACAAAAAAACAGAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAG : AGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTAT : ACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGTTTTCACTGCCACATTCTTCACTGGTGCATTTCAGGCTGTTTTTGGACTAT</gDNA_template>
            <first_frame> N  K  Q  T  K  K  Q  N  G  Y  T  S  Q  *  E  F  Q  H  *  A  T  A  A  *  C  S  Y  *  Y  C  K  E  S  E  N  S  M  A  P  C  F  S  *  S  S  K  F  F  P  S  T  H  *  F  C  *  K  K  C  *  Q  N  H  K  T  I  N  K  W  C  F  L  F  I  L  E  R  I  V  S  N  P  *  L  G  K  K  L  *  M  Y  N  V  *  A  *  H  N  G  W  L  N  S  C  *  S  L  H  T  T   : E  Y  W  I  C  *  S  C  E  T  *  S  S  I  W  L  I :   R  *  C  C  S  T  T  Y  I  C  C  D  G  K  F  A  R  D  C  Y  W  P  C  C  C  S  V  T  S  Y  F  C  T  D  F  Q  D  Y  R  P  C  C  R  S  N  R  L  Q  E  S  C  F  H  C  H  I  L  H  W  C  I  S  G  C  F  W  T   </first_frame>
            <second_frame>  T  N  K  Q  K  N  R  M  G  T  L  A  N  E  S  F  S  I  E  L  Q  Q  L  D  A  A  T  D  T  A  R  N  Q  R  T  Q  W  L  L  A  S  P  N  P  P  N  F  F  H  Q  L  I  N  S  V  K  K  N  V  D  R  T  T  K  R  S  T  N  G  V  F  F  S  F  L  K  G  L  F  P  I  L  S  W  G  R  N  Y  K  C  T  M  F  K  H  D  I  M  A  G  L  T  L  A  S  L  C  I  P  Q  :  S  I  G  Y  A  N  L  A  K  L  D  P  Q  Y  G  L   : Y  A  S  V  V  P  P  L  I  Y  A  V  M  G  S  S  R  E  I  A  I  G  P  V  A  V  V  S  L  L  I  S  A  L  I  S  K  I  I  D  P  A  V  D  P  I  A  Y  R  N  L  V  F  T  A  T  F  F  T  G  A  F  Q  A  V  F  G  L  </second_frame>
            <third_frame>   Q  T  N  K  K  T  E  W  V  H  *  P  M  R  V  S  A  L  S  Y  S  S  L  M  Q  L  L  I  L  Q  G  I  R  E  L  N  G  S  L  L  L  L  I  L  Q  I  F  S  I  N  S  L  I  L  L  K  K  M  L  T  E  P  Q  N  D  Q  Q  M  V  F  S  F  H  S  *  K  D  C  F  Q  S  L  A  G  E  E  I  I  N  V  Q  C  L  S  M  T  *  W  L  A  *  L  L  L  V  S  A  Y  H  R :   V  L  D  M  L  I  L  R  N  L  I  L  N  M  A  Y  :  T  L  V  L  F  H  H  L  Y  M  L  *  W  E  V  R  E  R  L  L  L  A  L  L  L  *  C  H  F  L  F  L  H  *  F  P  R  L  *  T  L  L  S  I  Q  S  L  T  G  I  L  F  S  L  P  H  S  S  L  V  H  F  R  L  F  L  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25841" stop="26170"/>
                    <exon start="26287" stop="26335"/>
                    <exon start="26410" stop="26612"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNKQKNRMGTLANESFSIELQQLDAATDTARNQRTQWLLASPNPPNFFHQLINSVKKNVDRTTKRSTNGVFFSFLKGLFPILSWGRNYKCTMFKHDIMAGLTLASLCIPQSIGYANLAKLDPQYGLYASVVPPLIYAVMGSSREIAIGPVAVVSLLISALISKIIDPAVDPIAYRNLVFTATFFTGAFQAVFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27472" PGL_stop="29470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27472" e_stop="27550"/>
            <exon e_start="27641" e_stop="27927"/>
            <exon e_start="28557" e_stop="28750"/>
            <exon e_start="28844" e_stop="28920"/>
            <exon e_start="29053" e_stop="29129"/>
            <exon e_start="29347" e_stop="29470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27472" e_stop="27550" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27551" i_stop="27640" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27641" e_stop="27927" e_length="287"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27928" i_stop="28556" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28557" e_stop="28750" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28751" i_stop="28843" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28844" e_stop="28920" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28921" i_stop="29052" i_length="132"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29053" e_stop="29129" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29130" i_stop="29346" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="29347" e_stop="29470" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27472" stop="27550"/>
              <exon start="27641" stop="27927"/>
              <exon start="28557" stop="28750"/>
              <exon start="28844" stop="28920"/>
              <exon start="29053" stop="29129"/>
              <exon start="29347" stop="29465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27473" stop="27550"/>
              <exon start="27641" stop="27927"/>
              <exon start="28557" stop="28750"/>
              <exon start="28844" stop="28860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27756" stop="27927"/>
              <exon start="28557" stop="28750"/>
              <exon start="28844" stop="28920"/>
              <exon start="29053" stop="29129"/>
              <exon start="29347" stop="29470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27756" stop="27927"/>
              <exon start="28557" stop="28750"/>
              <exon start="28844" stop="28920"/>
              <exon start="29053" stop="29129"/>
              <exon start="29347" stop="29414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTG : GTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCG : GTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAG : GATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAA : GTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGGAGGAGTTGAACAGAGAATTGGTATCACAAGGCATACAA : TTAGCTATAGCAAATCCAAGGTGGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGGTGGATTTTCCTCAGTGTTGGAGATGCTGTAGATGCCTGTTTGAATG</gDNA_template>
            <first_frame> L  D  G  N  K  E  M  V  A  I  G  C  M  N  L  V  G  S  L  T  S  C  Y  T  A  T   : G  S  F  S  R  T  A  V  N  Y  S  A  G  C  E  T  V  V  S  N  I  V  M  A  I  T  V  L  I  S  L  E  L  L  T  K  L  L  Y  Y  T  P  L  A  I  L  A  S  I  I  I  S  A  L  P  G  L  I  D  I  T  E  A  F  H  I  W  K  V  D  K  T  D  F  I  I  C  I  A  A  F  L  G  V  L  F  G  S  V  E  I  G  L  I  I  A  :  V  G  I  S  F  G  K  I  I  L  G  T  I  R  P  S  V  E  L  Q  G  R  L  P  G  T  D  T  F  C  D  I  T  Q  F  P  V  A  T  E  T  Q  G  V  L  V  I  R  V  N  N  A  S  L  C  F  A  N  A  N  F  I  R  G  R :   I  L  S  I  V  T  N  R  S  E  E  Q  S  K  G  K  L  R  I  L  V  L  D  M  S   : S  V  M  S  I  D  T  S  G  I  V  A  L  E  E  L  N  R  E  L  V  S  Q  G  I  Q  :  L  A  I  A  N  P  R  W  E  V  M  N  K  L  K  V  A  K  F  V  D  E  L  G  N  R  W  I  F  L  S  V  G  D  A  V  D  A  C  L  N  </first_frame>
            <second_frame>  L  M  V  T  K  K  W  *  Q  L  D  V  *  T  L  W  D  L  *  L  L  A  T  Q  Q  L  :  V  H  F  R  E  Q  Q  *  T  T  V  Q  D  V  K  L  L  C  Q  T  *  L  W  Q  *  Q  F  *  Y  H  *  S  C  *  Q  S  Y  Y  T  I  L  H  W  Q  Y  *  H  Q  L  S  Y  Q  L  Y  Q  D  *  L  T  L  L  K  H  F  T  F  G  K  L  T  R  Q  I  S  S  F  A  L  L  L  S  W  E  Y  S  L  A  P  S  K  S  V  L  *  *  R :   L  E  F  H  L  V  K  *  Y  L  V  P  L  D  Q  V  *  N  Y  K  V  D  Y  L  E  Q  T  L  F  V  T  *  L  N  F  Q  W  L  L  K  L  K  E  F  W  L  L  E  *  T  M  L  H  Y  A  L  Q  M  L  I  S  *  E  E   : G  Y  *  A  *  *  Q  I  E  V  K  S  S  P  R  E  N  F  V  S  *  C  *  I  C  Q  :  V  *  *  A  L  I  H  Q  E  L  L  H  W  R  S  *  T  E  N  W  Y  H  K  A  Y  N :   *  L  *  Q  I  Q  G  G  K  *  *  T  S  *  R  *  Q  N  L  *  M  N  L  E  I  G  G  F  S  S  V  L  E  M  L  *  M  P  V  *  M </second_frame>
            <third_frame>   *  W  *  Q  R  N  G  S  N  W  M  Y  E  P  C  G  I  F  N  F  L  L  H  S  N  W :   F  I  F  E  N  S  S  E  L  Q  C  R  M  *  N  C  C  V  K  H  S  Y  G  N  N  S  S  D  I  I  R  V  V  D  K  A  I  I  L  Y  S  I  G  N  T  S  I  N  Y  H  I  S  F  T  R  I  N  *  H  Y  *  S  I  S  H  L  E  S  *  Q  D  R  F  H  H  L  H  C  C  F  L  G  S  T  L  W  L  R  R  N  R  S  Y  N  S   : G  W  N  F  I  W  *  N  N  T  W  Y  H  *  T  K  C  R  T  T  R  *  T  T  W  N  R  H  F  L  *  H  N  S  I  S  S  G  Y  *  N  S  R  S  F  G  Y  *  S  E  Q  C  F  T  M  L  C  K  C  *  F  H  K  R  K  :  D  I  E  H  S  D  K  *  K  *  R  A  V  Q  G  K  T  S  Y  L  S  A  R  Y  V  K :   C  N  E  H  *  Y  I  R  N  C  C  I  G  G  V  E  Q  R  I  G  I  T  R  H  T   : I  S  Y  S  K  S  K  V  G  S  N  E  Q  V  E  G  S  K  I  C  R  *  T  W  K  *  V  D  F  P  Q  C  W  R  C  C  R  C  L  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27472" stop="27550"/>
                    <exon start="27641" stop="27927"/>
                    <exon start="28557" stop="28750"/>
                    <exon start="28844" stop="28920"/>
                    <exon start="29053" stop="29129"/>
                    <exon start="29347" stop="29469"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDGNKEMVAIGCMNLVGSLTSCYTATGSFSRTAVNYSAGCETVVSNIVMAITVLISLELLTKLLYYTPLAILASIIISALPGLIDITEAFHIWKVDKTDFIICIAAFLGVLFGSVEIGLIIAVGISFGKIILGTIRPSVELQGRLPGTDTFCDITQFPVATETQGVLVIRVNNASLCFANANFIRGRILSIVTNRSEEQSKGKLRILVLDMSSVMSIDTSGIVALEELNRELVSQGIQLAIANPRWEVMNKLKVAKFVDELGNRWIFLSVGDAVDACLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="90552" PGL_stop="85141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90552" e_stop="90191"/>
            <exon e_start="89102" e_stop="88964"/>
            <exon e_start="88161" e_stop="87920"/>
            <exon e_start="87604" e_stop="87377"/>
            <exon e_start="87273" e_stop="87135"/>
            <exon e_start="86993" e_stop="86929"/>
            <exon e_start="86849" e_stop="86801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.612" acc_prob="0.997" e_score="0.956"/>
          <exon-intron don_prob="0.742" acc_prob="0.988" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.691" acc_prob="0.602" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="90552" e_stop="90191" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.612" acc_prob="0.997">
            <gDNA_intron_boundary i_start="90190" i_stop="89103" i_length="1088"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="89102" e_stop="88964" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.742" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88963" i_stop="88162" i_length="802"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88161" e_stop="87920" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87919" i_stop="87605" i_length="315"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="87604" e_stop="87377" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.691" acc_prob="0.602">
            <gDNA_intron_boundary i_start="87376" i_stop="87274" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87273" e_stop="87135" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.824">
            <gDNA_intron_boundary i_start="87134" i_stop="86994" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86993" e_stop="86929" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86928" i_stop="86850" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86849" e_stop="86801" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90552" stop="90191"/>
              <exon start="89102" stop="88964"/>
              <exon start="88161" stop="88015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88134" stop="87920"/>
              <exon start="87604" stop="87377"/>
              <exon start="87273" stop="87201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87507" stop="87377"/>
              <exon start="87273" stop="87135"/>
              <exon start="86993" stop="86929"/>
              <exon start="86849" stop="86801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGATTCTCTATTTCTCTTCACACCTAACAAAAATCTCTACCTTCTAGGGCTTTGCTTCAATGGCGATTTCTCTTACGGCAGTTGTACTTCTGATGACGGCGGTATTGATGCTTTCCGTTGAGCTCGCCGCCGGTTATACATTCTCGTCGAGGTTGATTCACGGGTTCTCAGATGAAGCGTTGTCGTTTTGGGCATCTAAAGGGAAGAGTATGACGTGGCCGAAGCGCGAGAGTGTGGAGCATATGAGGTTGCTACTTAGTAATGATTGGAAACGACAGAGACTGAAGCTTGGTTCGCAGAAGCAGCTTTTGTTTCCATCTGAAGGAAGTGAAACTCATTTCTATGGAAATGAGTTGAGTTG : GCTGCATTATGTGTGGATTGACATAGGGACACCAAACACATCATTTCTTGTCGCCTTGGATGCTGGAAGTGATCTGCTCTGGCTCCCTTGCAATTGTGTACAATGTGCTCCATTGTCTTCAAGCTACTACTCAATGCTG : GATAAAGATCTGAATGAGTATAGCCCAGCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACATCAACTTCGGGGTTCCTTTTCGAGGACCAATTGCATTTGACTTCAGTTGGTGGACATGAACATCAAGGTTCTGTGCTAGCTCCTATTGTTATAGG : CTGTGGTAGCAAACAAAGTGGCAATTATTTGAGTGGAGCTGCTCCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTA : CAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAG : TTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAG : TTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCT</gDNA_template>
            <first_frame> P  I  L  Y  F  S  S  H  L  T  K  I  S  T  F  *  G  F  A  S  M  A  I  S  L  T  A  V  V  L  L  M  T  A  V  L  M  L  S  V  E  L  A  A  G  Y  T  F  S  S  R  L  I  H  G  F  S  D  E  A  L  S  F  W  A  S  K  G  K  S  M  T  W  P  K  R  E  S  V  E  H  M  R  L  L  L  S  N  D  W  K  R  Q  R  L  K  L  G  S  Q  K  Q  L  L  F  P  S  E  G  S  E  T  H  F  Y  G  N  E  L  S  W :   L  H  Y  V  W  I  D  I  G  T  P  N  T  S  F  L  V  A  L  D  A  G  S  D  L  L  W  L  P  C  N  C  V  Q  C  A  P  L  S  S  S  Y  Y  S  M  L  :  D  K  D  L  N  E  Y  S  P  A  R  S  S  S  S  K  Y  L  S  C  S  H  Q  L  C  E  L  G  P  N  C  R  S  P  K  E  H  C  P  Y  T  V  N  Y  Y  S  E  N  T  S  T  S  G  F  L  F  E  D  Q  L  H  L  T  S  V  G  G  H  E  H  Q  G  S  V  L  A  P  I  V  I  G :   C  G  S  K  Q  S  G  N  Y  L  S  G  A  A  P  D  G  V  M  G  L  G  P  G  E  I  S  V  P  S  L  L  A  K  S  G  F  V  P  R  S  F  S  L  C  F  G  K  S  N  S  G  T  I  F  F  G  D  K  G  P  E  N  Q  R  R  S  S  F  V  S  L  D  E  N  Y :   N  T  Y  V  V  E  V  Q  H  Y  C  V  G  G  T  C  P  K  Q  S  G  F  Q  A  L  V  D  S  G  S  S  F  T  F  L  P  S  E  I  F  T  K  V  V  T  E  :  F  E  E  Q  M  N  V  T  R  L  A  I  E  D  F  P  C  C  Y  K  A  S :   S  Q  G  L  P  N  I  P  S  M  K  L  L  L  A  A </first_frame>
            <second_frame>  R  F  S  I  S  L  H  T  *  Q  K  S  L  P  S  R  A  L  L  Q  W  R  F  L  L  R  Q  L  Y  F  *  *  R  R  Y  *  C  F  P  L  S  S  P  P  V  I  H  S  R  R  G  *  F  T  G  S  Q  M  K  R  C  R  F  G  H  L  K  G  R  V  *  R  G  R  S  A  R  V  W  S  I  *  G  C  Y  L  V  M  I  G  N  D  R  D  *  S  L  V  R  R  S  S  F  C  F  H  L  K  E  V  K  L  I  S  M  E  M  S  *  V   : G  C  I  M  C  G  L  T  *  G  H  Q  T  H  H  F  L  S  P  W  M  L  E  V  I  C  S  G  S  L  A  I  V  Y  N  V  L  H  C  L  Q  A  T  T  Q  C  W :   I  K  I  *  M  S  I  A  Q  H  D  Q  A  V  A  S  I  Y  L  A  A  I  N  Y  V  N  W  V  L  T  A  G  V  Q  R  N  I  A  L  I  L  L  I  T  I  L  K  I  H  Q  L  R  G  S  F  S  R  T  N  C  I  *  L  Q  L  V  D  M  N  I  K  V  L  C  *  L  L  L  L  *   : A  V  V  A  N  K  V  A  I  I  *  V  E  L  L  Q  M  G  *  W  D  *  G  Q  E  K  F  L  F  Q  V  C  W  R  S  L  D  L  F  H  A  H  S  H  C  V  L  E  R  A  I  L  A  Q  F  S  L  V  I  K  G  L  K  I  K  D  E  V  H  L  Y  L  W  M  K  I   : T  I  P  M  L  L  K  F  N  I  I  V  L  G  V  P  V  Q  S  K  V  D  F  K  P  *  L  I  V  G  L  P  S  L  F  S  L  L  K  S  L  Q  K  *  *  L  S :   L  K  S  K  *  T  L  R  G  *  L  *  K  I  F  L  A  A  I  R  L   : V  H  K  V  Y  R  T  F  L  A  *  N  F  C  *  L   </second_frame>
            <third_frame>   D  S  L  F  L  F  T  P  N  K  N  L  Y  L  L  G  L  C  F  N  G  D  F  S  Y  G  S  C  T  S  D  D  G  G  I  D  A  F  R  *  A  R  R  R  L  Y  I  L  V  E  V  D  S  R  V  L  R  *  S  V  V  V  L  G  I  *  R  E  E  Y  D  V  A  E  A  R  E  C  G  A  Y  E  V  A  T  *  *  *  L  E  T  T  E  T  E  A  W  F  A  E  A  A  F  V  S  I  *  R  K  *  N  S  F  L  W  K  *  V  E  L  :  A  A  L  C  V  D  *  H  R  D  T  K  H  I  I  S  C  R  L  G  C  W  K  *  S  A  L  A  P  L  Q  L  C  T  M  C  S  I  V  F  K  L  L  L  N  A   : G  *  R  S  E  *  V  *  P  S  T  I  K  Q  *  Q  V  S  I  L  Q  P  S  I  M  *  T  G  S  *  L  P  E  S  K  G  T  L  P  L  Y  C  *  L  L  F  *  K  Y  I  N  F  G  V  P  F  R  G  P  I  A  F  D  F  S  W  W  T  *  T  S  R  F  C  A  S  S  Y  C  Y  R  :  L  W  *  Q  T  K  W  Q  L  F  E  W  S  C  S  R  W  G  D  G  I  R  A  R  R  N  F  C  S  K  F  A  G  E  V  W  I  C  S  T  L  I  L  I  V  F  W  K  E  Q  F  W  H  N  F  L  W  *  *  R  A  *  K  S  K  T  K  F  I  C  I  F  G  *  K  L  :  Q  Y  L  C  C  *  S  S  T  L  L  C  W  G  Y  L  S  K  A  K  W  I  S  S  L  S  *  *  W  V  F  L  H  F  S  P  F  *  N  L  Y  K  S  S  N  *   : V  *  R  A  N  E  R  Y  E  V  S  Y  R  R  F  S  L  L  L  *  G  *  :  F  T  R  F  T  E  H  S  *  H  E  T  F  V  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90504" stop="90191"/>
                    <exon start="89102" stop="88964"/>
                    <exon start="88161" stop="87920"/>
                    <exon start="87604" stop="87377"/>
                    <exon start="87273" stop="87135"/>
                    <exon start="86993" stop="86929"/>
                    <exon start="86849" stop="86801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFASMAISLTAVVLLMTAVLMLSVELAAGYTFSSRLIHGFSDEALSFWASKGKSMTWPKRESVEHMRLLLSNDWKRQRLKLGSQKQLLFPSEGSETHFYGNELSWLHYVWIDIGTPNTSFLVALDAGSDLLWLPCNCVQCAPLSSSYYSMLDKDLNEYSPARSSSSKYLSCSHQLCELGPNCRSPKEHCPYTVNYYSENTSTSGFLFEDQLHLTSVGGHEHQGSVLAPIVIGCGSKQSGNYLSGAAPDGVMGLGPGEISVPSLLAKSGFVPRSFSLCFGKSNSGTIFFGDKGPENQRRSSFVSLDENYNTYVVEVQHYCVGGTCPKQSGFQALVDSGSSFTFLPSEIFTKVVTEFEEQMNVTRLAIEDFPCCYKASSQGLPNIPSMKLLLAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90552" e_stop="90191"/>
            <exon e_start="89102" e_stop="88964"/>
            <exon e_start="88161" e_stop="87920"/>
            <exon e_start="87604" e_stop="87377"/>
            <exon e_start="87273" e_stop="87135"/>
            <exon e_start="86993" e_stop="86750"/>
            <exon e_start="85364" e_stop="85304"/>
            <exon e_start="85205" e_stop="85141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.612" acc_prob="0.997" e_score="0.956"/>
          <exon-intron don_prob="0.742" acc_prob="0.988" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.691" acc_prob="0.602" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.327" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="90552" e_stop="90191" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.612" acc_prob="0.997">
            <gDNA_intron_boundary i_start="90190" i_stop="89103" i_length="1088"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="89102" e_stop="88964" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.742" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88963" i_stop="88162" i_length="802"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88161" e_stop="87920" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87919" i_stop="87605" i_length="315"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="87604" e_stop="87377" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.691" acc_prob="0.602">
            <gDNA_intron_boundary i_start="87376" i_stop="87274" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87273" e_stop="87135" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.824">
            <gDNA_intron_boundary i_start="87134" i_stop="86994" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86993" e_stop="86750" e_length="244"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="86749" i_stop="85365" i_length="1385"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85364" e_stop="85304" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.327" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85303" i_stop="85206" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="85205" e_stop="85141" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90552" stop="90191"/>
              <exon start="89102" stop="88964"/>
              <exon start="88161" stop="88015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88134" stop="87920"/>
              <exon start="87604" stop="87377"/>
              <exon start="87273" stop="87201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87414" stop="87377"/>
              <exon start="87273" stop="87135"/>
              <exon start="86993" stop="86750"/>
              <exon start="85364" stop="85304"/>
              <exon start="85205" stop="85141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGATTCTCTATTTCTCTTCACACCTAACAAAAATCTCTACCTTCTAGGGCTTTGCTTCAATGGCGATTTCTCTTACGGCAGTTGTACTTCTGATGACGGCGGTATTGATGCTTTCCGTTGAGCTCGCCGCCGGTTATACATTCTCGTCGAGGTTGATTCACGGGTTCTCAGATGAAGCGTTGTCGTTTTGGGCATCTAAAGGGAAGAGTATGACGTGGCCGAAGCGCGAGAGTGTGGAGCATATGAGGTTGCTACTTAGTAATGATTGGAAACGACAGAGACTGAAGCTTGGTTCGCAGAAGCAGCTTTTGTTTCCATCTGAAGGAAGTGAAACTCATTTCTATGGAAATGAGTTGAGTTG : GCTGCATTATGTGTGGATTGACATAGGGACACCAAACACATCATTTCTTGTCGCCTTGGATGCTGGAAGTGATCTGCTCTGGCTCCCTTGCAATTGTGTACAATGTGCTCCATTGTCTTCAAGCTACTACTCAATGCTG : GATAAAGATCTGAATGAGTATAGCCCAGCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACATCAACTTCGGGGTTCCTTTTCGAGGACCAATTGCATTTGACTTCAGTTGGTGGACATGAACATCAAGGTTCTGTGCTAGCTCCTATTGTTATAGG : CTGTGGTAGCAAACAAAGTGGCAATTATTTGAGTGGAGCTGCTCCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTA : CAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAG : TTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAGGTAAAGTCTGCTCTCGTGAAAATGCTGTTTTTTTGTTTTATTTACTTGTAGATTATTCTCCATATGCTTTTTTATGCAGTTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCTAATCAGAGCTTTGTAATTCAGAACCCCATGTTTACCATCTCCAGTAGTCAG : GGTGATAACTTTTATTGTGTGGGTCTCCTACCTATTGAAGGAATGATTGGTATTATTGGAC : AGAACTTTATGGAGGGATATCGATTGGTGTTTGATTGGGAAAACATGAAGTTGGGTTGGTCTCGC</gDNA_template>
            <first_frame> P  I  L  Y  F  S  S  H  L  T  K  I  S  T  F  *  G  F  A  S  M  A  I  S  L  T  A  V  V  L  L  M  T  A  V  L  M  L  S  V  E  L  A  A  G  Y  T  F  S  S  R  L  I  H  G  F  S  D  E  A  L  S  F  W  A  S  K  G  K  S  M  T  W  P  K  R  E  S  V  E  H  M  R  L  L  L  S  N  D  W  K  R  Q  R  L  K  L  G  S  Q  K  Q  L  L  F  P  S  E  G  S  E  T  H  F  Y  G  N  E  L  S  W :   L  H  Y  V  W  I  D  I  G  T  P  N  T  S  F  L  V  A  L  D  A  G  S  D  L  L  W  L  P  C  N  C  V  Q  C  A  P  L  S  S  S  Y  Y  S  M  L  :  D  K  D  L  N  E  Y  S  P  A  R  S  S  S  S  K  Y  L  S  C  S  H  Q  L  C  E  L  G  P  N  C  R  S  P  K  E  H  C  P  Y  T  V  N  Y  Y  S  E  N  T  S  T  S  G  F  L  F  E  D  Q  L  H  L  T  S  V  G  G  H  E  H  Q  G  S  V  L  A  P  I  V  I  G :   C  G  S  K  Q  S  G  N  Y  L  S  G  A  A  P  D  G  V  M  G  L  G  P  G  E  I  S  V  P  S  L  L  A  K  S  G  F  V  P  R  S  F  S  L  C  F  G  K  S  N  S  G  T  I  F  F  G  D  K  G  P  E  N  Q  R  R  S  S  F  V  S  L  D  E  N  Y :   N  T  Y  V  V  E  V  Q  H  Y  C  V  G  G  T  C  P  K  Q  S  G  F  Q  A  L  V  D  S  G  S  S  F  T  F  L  P  S  E  I  F  T  K  V  V  T  E  :  F  E  E  Q  M  N  V  T  R  L  A  I  E  D  F  P  C  C  Y  K  A  R  *  S  L  L  S  *  K  C  C  F  F  V  L  F  T  C  R  L  F  S  I  C  F  F  M  Q  F  T  R  F  T  E  H  S  *  H  E  T  F  V  S  C  *  S  E  L  C  N  S  E  P  H  V  Y  H  L  Q  *  S   : G  *  *  L  L  L  C  G  S  P  T  Y  *  R  N  D  W  Y  Y  W  T :   E  L  Y  G  G  I  S  I  G  V  *  L  G  K  H  E  V  G  L  V  S  </first_frame>
            <second_frame>  R  F  S  I  S  L  H  T  *  Q  K  S  L  P  S  R  A  L  L  Q  W  R  F  L  L  R  Q  L  Y  F  *  *  R  R  Y  *  C  F  P  L  S  S  P  P  V  I  H  S  R  R  G  *  F  T  G  S  Q  M  K  R  C  R  F  G  H  L  K  G  R  V  *  R  G  R  S  A  R  V  W  S  I  *  G  C  Y  L  V  M  I  G  N  D  R  D  *  S  L  V  R  R  S  S  F  C  F  H  L  K  E  V  K  L  I  S  M  E  M  S  *  V   : G  C  I  M  C  G  L  T  *  G  H  Q  T  H  H  F  L  S  P  W  M  L  E  V  I  C  S  G  S  L  A  I  V  Y  N  V  L  H  C  L  Q  A  T  T  Q  C  W :   I  K  I  *  M  S  I  A  Q  H  D  Q  A  V  A  S  I  Y  L  A  A  I  N  Y  V  N  W  V  L  T  A  G  V  Q  R  N  I  A  L  I  L  L  I  T  I  L  K  I  H  Q  L  R  G  S  F  S  R  T  N  C  I  *  L  Q  L  V  D  M  N  I  K  V  L  C  *  L  L  L  L  *   : A  V  V  A  N  K  V  A  I  I  *  V  E  L  L  Q  M  G  *  W  D  *  G  Q  E  K  F  L  F  Q  V  C  W  R  S  L  D  L  F  H  A  H  S  H  C  V  L  E  R  A  I  L  A  Q  F  S  L  V  I  K  G  L  K  I  K  D  E  V  H  L  Y  L  W  M  K  I   : T  I  P  M  L  L  K  F  N  I  I  V  L  G  V  P  V  Q  S  K  V  D  F  K  P  *  L  I  V  G  L  P  S  L  F  S  L  L  K  S  L  Q  K  *  *  L  S :   L  K  S  K  *  T  L  R  G  *  L  *  K  I  F  L  A  A  I  R  L  G  K  V  C  S  R  E  N  A  V  F  L  F  Y  L  L  V  D  Y  S  P  Y  A  F  L  C  S  S  Q  G  L  P  N  I  P  S  M  K  L  L  L  A  A  N  Q  S  F  V  I  Q  N  P  M  F  T  I  S  S  S  Q  :  G  D  N  F  Y  C  V  G  L  L  P  I  E  G  M  I  G  I  I  G   : Q  N  F  M  E  G  Y  R  L  V  F  D  W  E  N  M  K  L  G  W  S  R </second_frame>
            <third_frame>   D  S  L  F  L  F  T  P  N  K  N  L  Y  L  L  G  L  C  F  N  G  D  F  S  Y  G  S  C  T  S  D  D  G  G  I  D  A  F  R  *  A  R  R  R  L  Y  I  L  V  E  V  D  S  R  V  L  R  *  S  V  V  V  L  G  I  *  R  E  E  Y  D  V  A  E  A  R  E  C  G  A  Y  E  V  A  T  *  *  *  L  E  T  T  E  T  E  A  W  F  A  E  A  A  F  V  S  I  *  R  K  *  N  S  F  L  W  K  *  V  E  L  :  A  A  L  C  V  D  *  H  R  D  T  K  H  I  I  S  C  R  L  G  C  W  K  *  S  A  L  A  P  L  Q  L  C  T  M  C  S  I  V  F  K  L  L  L  N  A   : G  *  R  S  E  *  V  *  P  S  T  I  K  Q  *  Q  V  S  I  L  Q  P  S  I  M  *  T  G  S  *  L  P  E  S  K  G  T  L  P  L  Y  C  *  L  L  F  *  K  Y  I  N  F  G  V  P  F  R  G  P  I  A  F  D  F  S  W  W  T  *  T  S  R  F  C  A  S  S  Y  C  Y  R  :  L  W  *  Q  T  K  W  Q  L  F  E  W  S  C  S  R  W  G  D  G  I  R  A  R  R  N  F  C  S  K  F  A  G  E  V  W  I  C  S  T  L  I  L  I  V  F  W  K  E  Q  F  W  H  N  F  L  W  *  *  R  A  *  K  S  K  T  K  F  I  C  I  F  G  *  K  L  :  Q  Y  L  C  C  *  S  S  T  L  L  C  W  G  Y  L  S  K  A  K  W  I  S  S  L  S  *  *  W  V  F  L  H  F  S  P  F  *  N  L  Y  K  S  S  N  *   : V  *  R  A  N  E  R  Y  E  V  S  Y  R  R  F  S  L  L  L  *  G  *  V  K  S  A  L  V  K  M  L  F  F  C  F  I  Y  L  *  I  I  L  H  M  L  F  Y  A  V  H  K  V  Y  R  T  F  L  A  *  N  F  C  *  L  L  I  R  A  L  *  F  R  T  P  C  L  P  S  P  V  V  R :   V  I  T  F  I  V  W  V  S  Y  L  L  K  E  *  L  V  L  L  D  :  R  T  L  W  R  D  I  D  W  C  L  I  G  K  T  *  S  W  V  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90504" stop="90191"/>
                    <exon start="89102" stop="88964"/>
                    <exon start="88161" stop="87920"/>
                    <exon start="87604" stop="87377"/>
                    <exon start="87273" stop="87135"/>
                    <exon start="86993" stop="86925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFASMAISLTAVVLLMTAVLMLSVELAAGYTFSSRLIHGFSDEALSFWASKGKSMTWPKRESVEHMRLLLSNDWKRQRLKLGSQKQLLFPSEGSETHFYGNELSWLHYVWIDIGTPNTSFLVALDAGSDLLWLPCNCVQCAPLSSSYYSMLDKDLNEYSPARSSSSKYLSCSHQLCELGPNCRSPKEHCPYTVNYYSENTSTSGFLFEDQLHLTSVGGHEHQGSVLAPIVIGCGSKQSGNYLSGAAPDGVMGLGPGEISVPSLLAKSGFVPRSFSLCFGKSNSGTIFFGDKGPENQRRSSFVSLDENYNTYVVEVQHYCVGGTCPKQSGFQALVDSGSSFTFLPSEIFTKVVTEFEEQMNVTRLAIEDFPCCYKAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86956" stop="86750"/>
                    <exon start="85364" stop="85304"/>
                    <exon start="85205" stop="85141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIFLAAIRLGKVCSRENAVFLFYLLVDYSPYAFLCSSQGLPNIPSMKLLLAANQSFVIQNPMFTISSSQGDNFYCVGLLPIEGMIGIIGQNFMEGYRLVFDWENMKLGWSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="95770" PGL_stop="96476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95770" e_stop="96476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="95770" e_stop="96476" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95770" stop="96476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95770" stop="96475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATTCAGAGCACTGACACTGTACATGATATTGAGGATATGAGAATTTCATCTTTTAAGGGAGTGCTTGAGGATAACCTTAGGAGACAAGAGAATGATGCCGAGGTAACCTCAGTAACATCCAAGGATGCCTTGGGAAACAATAACATTAAGTTGGAGGACGAGGGTCTGAAACTCTCAGACATGGATGTTGAGTATAACAAGTCCAATCCAGACACTTAGGTATATGAGGTCAACCCTGATTTAGGGTCCCTAGTAAAATCTGATGCATTTTCTACTGATACTTTGCCCATTGATGAACATAATGATCTGAATGATAATTTGAATGCTGATAATGTTAATTAGTAACTGAAGTTGTTAGGCAAAAGATGGAGTCATCCAACAAAGACCTATCAGATGTTGGTAGCATTTATCCATTAGATGAACAGATGCCAAATGAGATGCAGGGTGATGTTGGAGAAATTGTTGATGACAAATCTTTGGAGGTGAAATTTAACATGAAAAAGGCCAATGCGTATCATGTTTCTGTTGCTGTTAACCAATGTAGAGCATGGTTTAGAAAGTAACGCATTGAATAATAGTGAGCAAAAAGATGTTCAGTTTGAAAAGGCTAGCACTTTAGGTGATGTTATCTAGCCTAGTTTGTCACCCAAGAAAGTTGAGGTATCTGCTGAAGATAAACATTGTATTGCTGCTTCTAGTGATGA</gDNA_template>
            <first_frame> V  I  Q  S  T  D  T  V  H  D  I  E  D  M  R  I  S  S  F  K  G  V  L  E  D  N  L  R  R  Q  E  N  D  A  E  V  T  S  V  T  S  K  D  A  L  G  N  N  N  I  K  L  E  D  E  G  L  K  L  S  D  M  D  V  E  Y  N  K  S  N  P  D  T  *  V  Y  E  V  N  P  D  L  G  S  L  V  K  S  D  A  F  S  T  D  T  L  P  I  D  E  H  N  D  L  N  D  N  L  N  A  D  N  V  N  *  *  L  K  L  L  G  K  R  W  S  H  P  T  K  T  Y  Q  M  L  V  A  F  I  H  *  M  N  R  C  Q  M  R  C  R  V  M  L  E  K  L  L  M  T  N  L  W  R  *  N  L  T  *  K  R  P  M  R  I  M  F  L  L  L  L  T  N  V  E  H  G  L  E  S  N  A  L  N  N  S  E  Q  K  D  V  Q  F  E  K  A  S  T  L  G  D  V  I  *  P  S  L  S  P  K  K  V  E  V  S  A  E  D  K  H  C  I  A  A  S  S  D   </first_frame>
            <second_frame>  L  F  R  A  L  T  L  Y  M  I  L  R  I  *  E  F  H  L  L  R  E  C  L  R  I  T  L  G  D  K  R  M  M  P  R  *  P  Q  *  H  P  R  M  P  W  E  T  I  T  L  S  W  R  T  R  V  *  N  S  Q  T  W  M  L  S  I  T  S  P  I  Q  T  L  R  Y  M  R  S  T  L  I  *  G  P  *  *  N  L  M  H  F  L  L  I  L  C  P  L  M  N  I  M  I  *  M  I  I  *  M  L  I  M  L  I  S  N  *  S  C  *  A  K  D  G  V  I  Q  Q  R  P  I  R  C  W  *  H  L  S  I  R  *  T  D  A  K  *  D  A  G  *  C  W  R  N  C  *  *  Q  I  F  G  G  E  I  *  H  E  K  G  Q  C  V  S  C  F  C  C  C  *  P  M  *  S  M  V  *  K  V  T  H  *  I  I  V  S  K  K  M  F  S  L  K  R  L  A  L  *  V  M  L  S  S  L  V  C  H  P  R  K  L  R  Y  L  L  K  I  N  I  V  L  L  L  L  V  M  </second_frame>
            <third_frame>   Y  S  E  H  *  H  C  T  *  Y  *  G  Y  E  N  F  I  F  *  G  S  A  *  G  *  P  *  E  T  R  E  *  C  R  G  N  L  S  N  I  Q  G  C  L  G  K  Q  *  H  *  V  G  G  R  G  S  E  T  L  R  H  G  C  *  V  *  Q  V  Q  S  R  H  L  G  I  *  G  Q  P  *  F  R  V  P  S  K  I  *  C  I  F  Y  *  Y  F  A  H  *  *  T  *  *  S  E  *  *  F  E  C  *  *  C  *  L  V  T  E  V  V  R  Q  K  M  E  S  S  N  K  D  L  S  D  V  G  S  I  Y  P  L  D  E  Q  M  P  N  E  M  Q  G  D  V  G  E  I  V  D  D  K  S  L  E  V  K  F  N  M  K  K  A  N  A  Y  H  V  S  V  A  V  N  Q  C  R  A  W  F  R  K  *  R  I  E  *  *  *  A  K  R  C  S  V  *  K  G  *  H  F  R  *  C  Y  L  A  *  F  V  T  Q  E  S  *  G  I  C  *  R  *  T  L  Y  C  C  F  *  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96111" stop="96335"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTEVVRQKMESSNKDLSDVGSIYPLDEQMPNEMQGDVGEIVDDKSLEVKFNMKKANAYHVSVAVNQCRAWFRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95770" stop="95991"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIQSTDTVHDIEDMRISSFKGVLEDNLRRQENDAEVTSVTSKDALGNNNIKLEDEGLKLSDMDVEYNKSNPDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="97482" PGL_stop="98605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97482" e_stop="97663"/>
            <exon e_start="97815" e_stop="97966"/>
            <exon e_start="98359" e_stop="98470"/>
            <exon e_start="98521" e_stop="98605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="0.611" e_score="0.885"/>
          <exon-intron don_prob="0.132" acc_prob="0.930" e_score="0.914"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.911"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.885">
            <gDNA_exon_boundary e_start="97482" e_stop="97663" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="0.611">
            <gDNA_intron_boundary i_start="97664" i_stop="97814" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="97815" e_stop="97966" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.132" acc_prob="0.930">
            <gDNA_intron_boundary i_start="97967" i_stop="98358" i_length="392"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="98359" e_stop="98470" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98471" i_stop="98520" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.929">
            <gDNA_exon_boundary e_start="98521" e_stop="98605" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97482" stop="97663"/>
              <exon start="97815" stop="97966"/>
              <exon start="98359" stop="98470"/>
              <exon start="98521" stop="98605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATGAGATTAAAGAGCCTGCAAAAAGACAGTGCAAATGGAACACTGAGAATTTGTGTACTGCTAAGCCACAAAATTTAAGTATTGCATTATCAGAGAACTTGGTTCTGACCATCCCTGTCAAGCCTATCTTTGCCAGGACTGACTCTACAGTTAGTAAGGATGCACCCAAGGAGCCCTGG : TACCAAAGTCTTCTAGAACAACCACTAATTCTCTCAAAATTGAGAAATTCTTGCAACCCTTTACGCTAAAAGCTGTGCAAGAGCTCTTTGCAAGAACTGGTGAAGTCTACAGTTTTTGGATGGACCACATAAAGACCCATTGCTAAGTCACG : TGTTCTTCTGTAGAGGAAGCCATAGAGAACCGAAATGCTATTTACAACCTCCAATGGCCACCAAAAGAAGGTCGTCTCCTGGTTGCAAATTTTGTTGATCCCCAACAGGTGC : AAACCAAAATAGACGGACGGGAGCCTGCTACTCCAGCGGCAAATCGCAGTACTGCAGTGCCTCCAACTTTATTCTCTGTTCAAGC</gDNA_template>
            <first_frame> D  M  R  L  K  S  L  Q  K  D  S  A  N  G  T  L  R  I  C  V  L  L  S  H  K  I  *  V  L  H  Y  Q  R  T  W  F  *  P  S  L  S  S  L  S  L  P  G  L  T  L  Q  L  V  R  M  H  P  R  S  P  G :   T  K  V  F  *  N  N  H  *  F  S  Q  N  *  E  I  L  A  T  L  Y  A  K  S  C  A  R  A  L  C  K  N  W  *  S  L  Q  F  L  D  G  P  H  K  D  P  L  L  S  H   : V  F  F  C  R  G  S  H  R  E  P  K  C  Y  L  Q  P  P  M  A  T  K  R  R  S  S  P  G  C  K  F  C  *  S  P  T  G  A :   N  Q  N  R  R  T  G  A  C  Y  S  S  G  K  S  Q  Y  C  S  A  S  N  F  I  L  C  S  S </first_frame>
            <second_frame>  I  *  D  *  R  A  C  K  K  T  V  Q  M  E  H  *  E  F  V  Y  C  *  A  T  K  F  K  Y  C  I  I  R  E  L  G  S  D  H  P  C  Q  A  Y  L  C  Q  D  *  L  Y  S  *  *  G  C  T  Q  G  A  L   : V  P  K  S  S  R  T  T  T  N  S  L  K  I  E  K  F  L  Q  P  F  T  L  K  A  V  Q  E  L  F  A  R  T  G  E  V  Y  S  F  W  M  D  H  I  K  T  H  C  *  V  T  :  C  S  S  V  E  E  A  I  E  N  R  N  A  I  Y  N  L  Q  W  P  P  K  E  G  R  L  L  V  A  N  F  V  D  P  Q  Q  V   : Q  T  K  I  D  G  R  E  P  A  T  P  A  A  N  R  S  T  A  V  P  P  T  L  F  S  V  Q   </second_frame>
            <third_frame>   Y  E  I  K  E  P  A  K  R  Q  C  K  W  N  T  E  N  L  C  T  A  K  P  Q  N  L  S  I  A  L  S  E  N  L  V  L  T  I  P  V  K  P  I  F  A  R  T  D  S  T  V  S  K  D  A  P  K  E  P  W  :  Y  Q  S  L  L  E  Q  P  L  I  L  S  K  L  R  N  S  C  N  P  L  R  *  K  L  C  K  S  S  L  Q  E  L  V  K  S  T  V  F  G  W  T  T  *  R  P  I  A  K  S  R :   V  L  L  *  R  K  P  *  R  T  E  M  L  F  T  T  S  N  G  H  Q  K  K  V  V  S  W  L  Q  I  L  L  I  P  N  R  C  :  K  P  K  *  T  D  G  S  L  L  L  Q  R  Q  I  A  V  L  Q  C  L  Q  L  Y  S  L  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97484" stop="97663"/>
                    <exon start="97815" stop="97883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEIKEPAKRQCKWNTENLCTAKPQNLSIALSENLVLTIPVKPIFARTDSTVSKDAPKEPWYQSLLEQPLILSKLRNSCNPLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97961" stop="97966"/>
                    <exon start="98359" stop="98470"/>
                    <exon start="98521" stop="98603"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTCSSVEEAIENRNAIYNLQWPPKEGRLLVANFVDPQQVQTKIDGREPATPAANRSTAVPPTLFSVQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="99319" PGL_stop="98653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99319" e_stop="98653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="99319" e_stop="98653" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99319" stop="98653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATCATCTGCATCCCTTCGATTTCTTAAAATTTTACAGTAAAGAAAACGCGTGGAGATAAATGACATTTATAGTTTTGGCGCAATTCAACTATGTATCTGGATGAAGAAAGAAGGCAGACTCTGCACATTTTGTTATGTTTTTTCAACCCAAAGCAAAATATAGTAGAGACTTCAACCTTGCAGTAACCATTAACAACGAAAATAGAAAAGAAAGCAAGGTCTTAGTGAGCCTCAAGACTGCAACTTCTCTTTGAGGGCAAACTAGCAGTTATCAGCATTACATCGCAACACTTCTCTTTAATCCATCTATCTAACAAGTCCTTTCTTCACTTAAAAGCTCTAGTTCTCAGCACTTCCTCTACTGGCAAGCCTTTTAGCAACTTCTTCATCATTCAGCGACATATAATAGATACGGGGAGCGACTTTGGTCTTTTTGAAGATGTCATCTAAAGTAATAATAGGGGGGTTATTTTTATCAGCAACAGGTGGAGCCAACCTCTCTTTTATTGGTGGCGCACTAGGAGGAGCAGGTGGTGGCTGGCGGGTGAGTGGATGTTCTGACTCAACCTGTTGTTTGCGACCCTGCTGCCAAGCAGGTCGAGCCAACCTCTCTCTTATTGATGGTGCAGTAGGAGGTACAGTTGGTGGTTGGCGCGTGAGTGGA</gDNA_template>
            <first_frame> F  I  I  C  I  P  S  I  S  *  N  F  T  V  K  K  T  R  G  D  K  *  H  L  *  F  W  R  N  S  T  M  Y  L  D  E  E  R  R  Q  T  L  H  I  L  L  C  F  F  N  P  K  Q  N  I  V  E  T  S  T  L  Q  *  P  L  T  T  K  I  E  K  K  A  R  S  *  *  A  S  R  L  Q  L  L  F  E  G  K  L  A  V  I  S  I  T  S  Q  H  F  S  L  I  H  L  S  N  K  S  F  L  H  L  K  A  L  V  L  S  T  S  S  T  G  K  P  F  S  N  F  F  I  I  Q  R  H  I  I  D  T  G  S  D  F  G  L  F  E  D  V  I  *  S  N  N  R  G  V  I  F  I  S  N  R  W  S  Q  P  L  F  Y  W  W  R  T  R  R  S  R  W  W  L  A  G  E  W  M  F  *  L  N  L  L  F  A  T  L  L  P  S  R  S  S  Q  P  L  S  Y  *  W  C  S  R  R  Y  S  W  W  L  A  R  E  W  </first_frame>
            <second_frame>  S  S  S  A  S  L  R  F  L  K  I  L  Q  *  R  K  R  V  E  I  N  D  I  Y  S  F  G  A  I  Q  L  C  I  W  M  K  K  E  G  R  L  C  T  F  C  Y  V  F  S  T  Q  S  K  I  *  *  R  L  Q  P  C  S  N  H  *  Q  R  K  *  K  R  K  Q  G  L  S  E  P  Q  D  C  N  F  S  L  R  A  N  *  Q  L  S  A  L  H  R  N  T  S  L  *  S  I  Y  L  T  S  P  F  F  T  *  K  L  *  F  S  A  L  P  L  L  A  S  L  L  A  T  S  S  S  F  S  D  I  *  *  I  R  G  A  T  L  V  F  L  K  M  S  S  K  V  I  I  G  G  L  F  L  S  A  T  G  G  A  N  L  S  F  I  G  G  A  L  G  G  A  G  G  G  W  R  V  S  G  C  S  D  S  T  C  C  L  R  P  C  C  Q  A  G  R  A  N  L  S  L  I  D  G  A  V  G  G  T  V  G  G  W  R  V  S  G </second_frame>
            <third_frame>   H  H  L  H  P  F  D  F  L  K  F  Y  S  K  E  N  A  W  R  *  M  T  F  I  V  L  A  Q  F  N  Y  V  S  G  *  R  K  K  A  D  S  A  H  F  V  M  F  F  Q  P  K  A  K  Y  S  R  D  F  N  L  A  V  T  I  N  N  E  N  R  K  E  S  K  V  L  V  S  L  K  T  A  T  S  L  *  G  Q  T  S  S  Y  Q  H  Y  I  A  T  L  L  F  N  P  S  I  *  Q  V  L  S  S  L  K  S  S  S  S  Q  H  F  L  Y  W  Q  A  F  *  Q  L  L  H  H  S  A  T  Y  N  R  Y  G  E  R  L  W  S  F  *  R  C  H  L  K  *  *  *  G  G  Y  F  Y  Q  Q  Q  V  E  P  T  S  L  L  L  V  A  H  *  E  E  Q  V  V  A  G  G  *  V  D  V  L  T  Q  P  V  V  C  D  P  A  A  K  Q  V  E  P  T  S  L  L  L  M  V  Q  *  E  V  Q  L  V  V  G  A  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98907" stop="98653"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRGATLVFLKMSSKVIIGGLFLSATGGANLSFIGGALGGAGGGWRVSGCSDSTCCLRPCCQAGRANLSLIDGAVGGTVGGWRVSG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99088" stop="98867"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRLQLLFEGKLAVISITSQHFSLIHLSNKSFLHLKALVLSTSSTGKPFSNFFIIQRHIIDTGSDFGLFEDVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="100979" PGL_stop="105786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101033" e_stop="101384"/>
            <exon e_start="105030" e_stop="105786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.997"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="101033" e_stop="101384" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="105030" e_stop="105786" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101033" stop="101384"/>
              <exon start="105030" stop="105264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101043" stop="101384"/>
              <exon start="105030" stop="105384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101062" stop="101384"/>
              <exon start="105030" stop="105221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101073" stop="101384"/>
              <exon start="105030" stop="105264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101083" stop="101384"/>
              <exon start="105030" stop="105538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101301" stop="101384"/>
              <exon start="105030" stop="105698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105103" stop="105671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCGATAAATTTCACAGCTTCTCCATAAATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG : GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGGAGAATCAGACCGTTTGGAGGCACCGGTTGGTAGCACTAGTGTTATAAATGAGATTGCATCTAATAAGGAACACAAGGTTATTGATT</gDNA_template>
            <first_frame> H  S  I  N  F  T  A  S  P  *  I  K  T  L  E  I  L  F  I  S  S  H  *  H  F  T  N  P  I  F  F  R  K  N  S  F  S  W  C  H  F  Y  I  N  Y  I  R  V  L  I  *  I  Y  I  *  L  T  D  Q  Y  N  L  G  I  L  Y  C  F  A  *  I  C  I  N  L  F  L  I  L  T  I  V  C  F  C  F  W  D  *  G  F  S  R  F  C  F  G  T  R  V  F  T  I  F  L  V  E  S  F  G  V  Q  V  T  I  C  T   : G  L  S  K  *  F  F  S  L  G  G  *  D  V  G  L  P  C  A  *  *  S  S  N  *  *  M  E  S  S  R  I  K  G  *  A  *  E  E  E  L  N  D  K  R  F  E  G  *  S  G  *  T  I  K  *  S  Y  L  H  R  N  G  S  C  C  S  *  R  E  *  G  *  *  S  *  H  *  S  C  Q  W  S  *  R  Y  *  T  R  A  *  S  C  *  I  G  *  *  C  S  G  A  S  P  N  *  S  H  S  W  F  *  T  Y  Y  *  C  Y  M  W  S  *  R  S  S  T  K  *  Q  S  *  Y  I  G  *  *  R  S  E  A  K  T  R  *  I  *  Q  Y  *  Q  *  C  C  *  G  H  H  Q  E  L  S  C  W  N  R  P  E  Q  S  H  G  *  G  C  N  W  R  *  *  *  C  S  E  A  S  P  K  *  S  *  R  N  *  W  *  C  Q  C  *  H  Q  E  C  S  C  *  N  R  P  E  *  S  L  G  *  G  C  N  W  R  Y  C  C  W  R  I  R  P  F  G  G  T  G  W  *  H  *  C  Y  K  *  D  C  I  *  *  G  T  Q  G  Y  *   </first_frame>
            <second_frame>  I  R  *  I  S  Q  L  L  H  K  L  K  P  *  K  F  S  S  S  Q  A  I  S  I  L  Q  I  Q  F  S  S  E  R  T  V  F  L  G  V  I  F  I  *  I  I  Y  V  Y  *  Y  K  Y  I  Y  N  *  Q  I  N  I  I  *  E  Y  C  I  V  L  L  R  F  V  L  I  C  F  *  F  *  Q  L  C  A  F  V  S  G  I  R  V  S  L  V  S  V  L  E  L  G  F  S  P  S  F  W  L  K  V  L  V  S  K  *  L  F  A  L  :  V  C  L  S  D  F  F  H  L  A  A  K  M  S  D  Y  P  V  L  D  N  R  P  I  N  K  W  K  V  A  E  L  R  D  E  L  K  R  R  N  L  T  T  K  G  L  K  D  D  L  V  R  R  L  N  E  A  I  C  I  E  M  E  A  A  A  V  K  E  S  K  D  D  D  R  D  I  D  P  A  S  G  L  E  D  T  E  P  E  P  D  P  V  K  L  V  D  D  V  L  E  H  P  P  I  E  V  T  H  G  S  E  H  I  T  D  A  T  C  G  L  E  E  A  Q  P  N  S  N  P  D  I  L  V  D  N  V  Q  K  Q  K  Q  D  E  F  N  S  I  D  S  D  V  A  R  A  T  T  K  N  C  L  V  G  I  D  Q  N  K  V  M  D  E  V  A  T  G  G  N  D  D  V  L  K  H  H  Q  N  E  V  N  E  I  D  G  D  A  S  A  S  T  K  N  A  L  V  E  I  D  Q  N  K  V  L  D  E  V  A  T  G  D  T  A  A  G  E  S  D  R  L  E  A  P  V  G  S  T  S  V  I  N  E  I  A  S  N  K  E  H  K  V  I  D  </second_frame>
            <third_frame>   F  D  K  F  H  S  F  S  I  N  *  N  P  R  N  S  L  H  L  K  P  L  A  F  Y  K  S  N  F  L  P  K  E  Q  F  F  L  V  S  F  L  Y  K  L  Y  T  C  I  D  I  N  I  Y  I  I  N  R  S  I  *  F  R  N  T  V  L  F  C  L  D  L  Y  *  F  V  S  D  S  N  N  C  V  L  L  F  L  G  L  G  F  L  S  F  L  F  W  N  *  G  F  H  H  L  F  G  *  K  F  W  C  P  S  D  Y  L  H  W :   F  V  *  V  I  F  F  T  W  R  L  R  C  R  T  T  L  C  L  I  I  V  Q  L  I  N  G  K  *  Q  N  *  G  M  S  L  R  G  G  T  *  R  Q  K  V  *  R  M  I  W  L  D  D  *  M  K  L  S  A  *  K  W  K  L  L  Q  L  K  R  V  R  M  M  I  V  T  L  I  L  P  V  V  L  K  I  L  N  P  S  L  I  L  L  N  W  L  M  M  F  W  S  I  P  Q  L  K  S  L  M  V  L  N  I  L  L  M  L  H  V  V  L  K  K  L  N  Q  I  A  I  L  I  Y  W  L  I  T  F  R  S  K  N  K  M  N  L  T  V  L  T  V  M  L  L  G  P  P  P  R  I  V  L  L  E  *  T  R  T  K  S  W  M  R  L  Q  L  E  V  M  M  M  F  *  S  I  T  K  M  K  L  T  K  L  M  V  M  P  V  L  A  P  R  M  L  L  L  K  *  T  R  I  K  S  W  M  R  L  Q  L  E  I  L  L  L  E  N  Q  T  V  W  R  H  R  L  V  A  L  V  L  *  M  R  L  H  L  I  R  N  T  R  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101373" stop="101384"/>
                    <exon start="105030" stop="105785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFALVCLSDFFHLAAKMSDYPVLDNRPINKWKVAELRDELKRRNLTTKGLKDDLVRRLNEAICIEMEAAAVKESKDDDRDIDPASGLEDTEPEPDPVKLVDDVLEHPPIEVTHGSEHITDATCGLEEAQPNSNPDILVDNVQKQKQDEFNSIDSDVARATTKNCLVGIDQNKVMDEVATGGNDDVLKHHQNEVNEIDGDASASTKNALVEIDQNKVLDEVATGDTAAGESDRLEAPVGSTSVINEIASNKEHKVID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100979" e_stop="100995"/>
            <exon e_start="101300" e_stop="101384"/>
            <exon e_start="105030" e_stop="105786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.653" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100979" e_stop="100995" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.653">
            <gDNA_intron_boundary i_start="100996" i_stop="101299" i_length="304"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101300" e_stop="101384" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="105030" e_stop="105786" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100979" stop="100995"/>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101300" stop="101384"/>
              <exon start="105030" stop="105356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101301" stop="101384"/>
              <exon start="105030" stop="105698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105103" stop="105671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAGCAACAGACAGAG : GGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG : GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGGAGAATCAGACCGTTTGGAGGCACCGGTTGGTAGCACTAGTGTTATAAATGAGATTGCATCTAATAAGGAACACAAGGTTATTGATT</gDNA_template>
            <first_frame> S  S  N  R  Q  R :   V  S  L  V  S  V  L  E  L  G  F  S  P  S  F  W  L  K  V  L  V  S  K  *  L  F  A  L  :  V  C  L  S  D  F  F  H  L  A  A  K  M  S  D  Y  P  V  L  D  N  R  P  I  N  K  W  K  V  A  E  L  R  D  E  L  K  R  R  N  L  T  T  K  G  L  K  D  D  L  V  R  R  L  N  E  A  I  C  I  E  M  E  A  A  A  V  K  E  S  K  D  D  D  R  D  I  D  P  A  S  G  L  E  D  T  E  P  E  P  D  P  V  K  L  V  D  D  V  L  E  H  P  P  I  E  V  T  H  G  S  E  H  I  T  D  A  T  C  G  L  E  E  A  Q  P  N  S  N  P  D  I  L  V  D  N  V  Q  K  Q  K  Q  D  E  F  N  S  I  D  S  D  V  A  R  A  T  T  K  N  C  L  V  G  I  D  Q  N  K  V  M  D  E  V  A  T  G  G  N  D  D  V  L  K  H  H  Q  N  E  V  N  E  I  D  G  D  A  S  A  S  T  K  N  A  L  V  E  I  D  Q  N  K  V  L  D  E  V  A  T  G  D  T  A  A  G  E  S  D  R  L  E  A  P  V  G  S  T  S  V  I  N  E  I  A  S  N  K  E  H  K  V  I  D  </first_frame>
            <second_frame>  A  A  T  D  R   : G  F  L  S  F  L  F  W  N  *  G  F  H  H  L  F  G  *  K  F  W  C  P  S  D  Y  L  H  W :   F  V  *  V  I  F  F  T  W  R  L  R  C  R  T  T  L  C  L  I  I  V  Q  L  I  N  G  K  *  Q  N  *  G  M  S  L  R  G  G  T  *  R  Q  K  V  *  R  M  I  W  L  D  D  *  M  K  L  S  A  *  K  W  K  L  L  Q  L  K  R  V  R  M  M  I  V  T  L  I  L  P  V  V  L  K  I  L  N  P  S  L  I  L  L  N  W  L  M  M  F  W  S  I  P  Q  L  K  S  L  M  V  L  N  I  L  L  M  L  H  V  V  L  K  K  L  N  Q  I  A  I  L  I  Y  W  L  I  T  F  R  S  K  N  K  M  N  L  T  V  L  T  V  M  L  L  G  P  P  P  R  I  V  L  L  E  *  T  R  T  K  S  W  M  R  L  Q  L  E  V  M  M  M  F  *  S  I  T  K  M  K  L  T  K  L  M  V  M  P  V  L  A  P  R  M  L  L  L  K  *  T  R  I  K  S  W  M  R  L  Q  L  E  I  L  L  L  E  N  Q  T  V  W  R  H  R  L  V  A  L  V  L  *  M  R  L  H  L  I  R  N  T  R  L  L  I </second_frame>
            <third_frame>   Q  Q  Q  T  E  :  G  F  S  R  F  C  F  G  T  R  V  F  T  I  F  L  V  E  S  F  G  V  Q  V  T  I  C  T   : G  L  S  K  *  F  F  S  L  G  G  *  D  V  G  L  P  C  A  *  *  S  S  N  *  *  M  E  S  S  R  I  K  G  *  A  *  E  E  E  L  N  D  K  R  F  E  G  *  S  G  *  T  I  K  *  S  Y  L  H  R  N  G  S  C  C  S  *  R  E  *  G  *  *  S  *  H  *  S  C  Q  W  S  *  R  Y  *  T  R  A  *  S  C  *  I  G  *  *  C  S  G  A  S  P  N  *  S  H  S  W  F  *  T  Y  Y  *  C  Y  M  W  S  *  R  S  S  T  K  *  Q  S  *  Y  I  G  *  *  R  S  E  A  K  T  R  *  I  *  Q  Y  *  Q  *  C  C  *  G  H  H  Q  E  L  S  C  W  N  R  P  E  Q  S  H  G  *  G  C  N  W  R  *  *  *  C  S  E  A  S  P  K  *  S  *  R  N  *  W  *  C  Q  C  *  H  Q  E  C  S  C  *  N  R  P  E  *  S  L  G  *  G  C  N  W  R  Y  C  C  W  R  I  R  P  F  G  G  T  G  W  *  H  *  C  Y  K  *  D  C  I  *  *  G  T  Q  G  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101373" stop="101384"/>
                    <exon start="105030" stop="105785"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFALVCLSDFFHLAAKMSDYPVLDNRPINKWKVAELRDELKRRNLTTKGLKDDLVRRLNEAICIEMEAAAVKESKDDDRDIDPASGLEDTEPEPDPVKLVDDVLEHPPIEVTHGSEHITDATCGLEEAQPNSNPDILVDNVQKQKQDEFNSIDSDVARATTKNCLVGIDQNKVMDEVATGGNDDVLKHHQNEVNEIDGDASASTKNALVEIDQNKVLDEVATGDTAAGESDRLEAPVGSTSVINEIASNKEHKVID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="105828" PGL_stop="109212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105828" e_stop="106557"/>
            <exon e_start="106650" e_stop="106952"/>
            <exon e_start="107613" e_stop="107798"/>
            <exon e_start="107891" e_stop="108042"/>
            <exon e_start="108394" e_stop="109212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.425" acc_prob="0.998" e_score="0.974"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.510" e_score="1.000"/>
          <exon-intron don_prob="0.538" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="105828" e_stop="106557" e_length="730"/>
          </exon>
          <intron i_serial="1" don_prob="0.425" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106650" e_stop="106952" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107613" e_stop="107798" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.510">
            <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107891" e_stop="108042" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.538" acc_prob="0.950">
            <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="108394" e_stop="109212" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105828" stop="106239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105999" stop="106298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106091" stop="106557"/>
              <exon start="106650" stop="106886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106217" stop="106557"/>
              <exon start="106650" stop="106932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106274" stop="106557"/>
              <exon start="106650" stop="106952"/>
              <exon start="107613" stop="107798"/>
              <exon start="107891" stop="107969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106290" stop="106557"/>
              <exon start="106650" stop="106880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106371" stop="106557"/>
              <exon start="106650" stop="106824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106372" stop="106557"/>
              <exon start="106650" stop="106952"/>
              <exon start="107613" stop="107762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106372" stop="106557"/>
              <exon start="106650" stop="106888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106507" stop="106557"/>
              <exon start="106650" stop="106952"/>
              <exon start="107613" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106525" stop="106557"/>
              <exon start="106650" stop="106952"/>
              <exon start="107613" stop="107798"/>
              <exon start="107891" stop="108012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106675" stop="106952"/>
              <exon start="107613" stop="107779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106827" stop="106952"/>
              <exon start="107613" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107617" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107634" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107635" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107635" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107975" stop="108042"/>
              <exon start="108394" stop="108745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108677" stop="109212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417316" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108677" stop="109212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108692" stop="109204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108693" stop="109204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108693" stop="109197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432231" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGATGGTTCTATTCCAGTCAGTAGCACTAGACAGGATGTTGAGGATATGAAAATTTCATCTTATGAGGGAGTGCTTGAGGACAACCTTAGGGGACAAGAAAATGATGTGGAGGTAACCCCAGTAACATCAGAGGAAGCATTGAAAAACCACAGCATTAAGTTGGATAATGAGGGTCTGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTTAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAG : ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG : ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG : TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG : TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATGAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTTGGTTTGTTACTGTTTGCAGACTTTGGTTGCTACTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGTTTGAAGATACTTCTGAATGTGCAGATTATAAAGAATCTGTGTTAGTCTGACTTCTTTCTTTATCCAGATTTTTGGAGAAGTATTTGAATATTAATCATCTGAGTTATGAGATATATTATGTAAGTGGTATCA</gDNA_template>
            <first_frame> W  D  G  S  I  P  V  S  S  T  R  Q  D  V  E  D  M  K  I  S  S  Y  E  G  V  L  E  D  N  L  R  G  Q  E  N  D  V  E  V  T  P  V  T  S  E  E  A  L  K  N  H  S  I  K  L  D  N  E  G  L  K  L  S  D  M  D  A  E  P  D  M  S  N  P  A  T  Q  V  Y  E  V  N  P  N  L  G  S  Q  V  K  S  D  S  F  S  T  D  T  L  T  I  N  E  N  K  D  L  N  D  N  L  N  A  D  N  V  K  L  E  T  E  V  V  R  Q  E  M  E  L  Q  S  S  S  K  D  L  S  G  V  G  S  S  H  P  L  D  G  Q  M  P  H  E  M  Q  G  L  V  G  E  T  D  D  D  K  S  S  D  V  K  F  S  M  K  N  D  N  A  D  Q  V  S  V  D  V  S  K  V  E  H  D  F  E  S  K  T  P  N  N  S  E  Q  P  D  I  Q  F  E  K  A  R  T  L  G  D  V  E  E  P  S  L  S  P  M  K  I  E  A  S  A  E  D  T  H  D  L  A  V  S  G  D  D  R  K   : D  F  S  K  I  A  D  V  V  D  G  E  N  M  E  K  I  N  L  D  Q  S  S  A  D  D  S  M  E  E  D  V  V  E  T  K  H  V  D  F  D  H  I  S  K  K  E  N  D  K  T  D  E  F  I  T  G  M  T  E  E  P  K  V  R  P  S  G  S  S  D  A  M  Q  L  D  I  P  S  E  K  V  A  S  Q  E  T  K  D  K  S  L  A  L  S  E  K  R  K  F  Q   : D  E  A  G  G  G  S  K  E  P  A  K  R  Q  R  R  W  N  T  E  K  T  A  E  P  Q  N  S  S  I  A  L  T  K  K  V  V  Q  P  T  P  I  K  P  I  L  G  R  T  N  S  T  V  G  G  D  S  P  K  E  R  F   : V  P  K  S  S  K  T  A  T  T  S  L  K  I  E  N  F  L  R  P  F  T  L  K  A  V  Q  E  L  L  A  R  T  G  E  V  C  S  F  W  M  D  Q  I  K  T  H  C  Y  V  T  :  Y  S  S  V  E  E  A  T  E  T  R  N  A  V  Y  N  L  Q  W  P  P  N  G  G  R  L  L  V  A  D  F  V  D  P  Q  Q  V  Q  T  K  I  E  G  R  E  P  A  S  P  P  K  V  T  S  P  A  V  P  A  S  S  F  V  Q  T  P  P  A  Q  Q  Q  G  R  K  Q  Q  A  E  L  E  H  S  L  T  R  Q  P  P  P  A  P  P  S  A  P  P  T  K  E  M  L  P  S  P  V  A  D  K  N  D  P  P  I  V  T  L  D  D  L  F  R  K  T  K  V  T  P  R  I  Y  Y  L  P  L  T  D  E  E  V  A  K  K  L  A  I  R  G  N  A  K  P  *  D  I  R  *  I  K  G  H  V  R  W  I  C  R  V  V  F  *  C  N  A  E  N  C  K  F  A  R  M  K  K  L  Q  S  N  L  *  A  S  S  E  F  L  E  A  R  *  D  F  P  F  F  S  I  F  G  L  L  L  F  A  D  F  G  C  Y  *  V  Q  V  L  T  V  F  C  F  G  L  K  I  L  L  N  V  Q  I  I  K  N  L  C  *  S  D  F  F  L  Y  P  D  F  W  R  S  I  *  I  L  I  I  *  V  M  R  Y  I  M  *  V  V  S </first_frame>
            <second_frame>  G  M  V  L  F  Q  S  V  A  L  D  R  M  L  R  I  *  K  F  H  L  M  R  E  C  L  R  T  T  L  G  D  K  K  M  M  W  R  *  P  Q  *  H  Q  R  K  H  *  K  T  T  A  L  S  W  I  M  R  V  *  N  S  Q  T  W  M  L  S  Q  I  C  P  I  Q  P  L  R  Y  M  R  S  T  L  I  *  G  L  K  *  N  L  T  H  F  L  L  I  L  *  P  L  M  K  I  K  I  *  M  I  I  *  M  L  I  M  S  N  *  K  L  K  L  L  G  K  R  W  S  C  S  H  P  A  K  T  Y  Q  V  L  V  A  L  I  H  W  M  V  R  C  H  M  R  C  R  V  L  L  E  K  L  M  M  T  N  L  Q  M  *  N  L  A  *  K  M  T  M  Q  I  R  F  L  L  T  F  P  R  *  S  M  I  S  R  V  R  L  Q  I  I  V  S  N  P  I  Y  S  L  K  K  L  E  L  *  V  M  L  K  S  L  V  C  H  P  *  K  L  R  H  L  R  K  I  H  T  I  L  L  F  L  V  M  I  E  K  :  I  L  A  R  *  P  M  *  W  M  V  R  I  W  K  R  L  T  W  I  S  L  L  L  M  I  P  W  R  R  M  *  *  R  Q  N  M  W  I  L  I  I  F  L  R  K  R  M  T  R  L  M  S  L  L  R  E  *  Q  K  S  P  K  F  D  Q  V  V  L  L  M  Q  C  S  *  T  F  L  L  R  R  L  R  L  K  K  L  K  I  S  L  L  L  C  Q  R  R  E  S  F  K  :  M  K  Q  E  V  G  V  K  S  L  Q  K  G  S  V  D  G  T  L  R  R  L  L  N  P  K  I  L  V  L  L  *  Q  R  R  L  F  S  P  L  L  S  N  P  S  L  A  G  L  T  L  Q  L  V  G  I  H  P  R  S  A  L  :  Y  Q  S  L  Q  K  Q  P  L  L  L  S  K  L  R  I  S  C  G  L  L  R  *  K  L  C  K  S  S  L  Q  G  L  V  K  S  A  V  S  G  W  T  R  *  R  P  I  A  M  S  R :   I  L  R  *  K  K  P  Q  R  P  E  T  R  C  T  I  S  N  G  H  Q  M  V  V  V  S  W  L  Q  I  L  L  I  L  N  R  C  K  P  R  *  R  V  G  N  L  L  L  H  R  K  L  P  V  L  L  C  L  L  H  P  L  F  K  H  H  L  L  S  S  R  V  A  N  N  K  L  S  W  N  I  H  S  H  A  S  H  L  L  L  L  L  V  L  L  Q  Q  K  R  C  C  L  H  L  L  L  I  K  M  I  P  L  L  L  L  W  M  T  S  S  E  R  P  K  S  L  P  V  S  I  I  Y  R  *  Q  M  K  K  L  L  K  S  L  P  L  G  E  M  L  S  L  E  I  L  G  K  *  R  G  M  L  D  G  S  V  E  W  C  S  S  V  M  L  K  T  A  S  L  P  A  *  R  S  C  S  L  I  C  R  R  V  V  S  F  L  R  L  V  E  T  F  L  S  F  L  F  L  V  C  Y  C  L  Q  T  L  V  A  T  R  C  K  S  *  L  Y  F  A  L  V  *  R  Y  F  *  M  C  R  L  *  R  I  C  V  S  L  T  S  F  F  I  Q  I  F  G  E  V  F  E  Y  *  S  S  E  L  *  D  I  L  C  K  W  Y   </second_frame>
            <third_frame>   G  W  F  Y  S  S  Q  *  H  *  T  G  C  *  G  Y  E  N  F  I  L  *  G  S  A  *  G  Q  P  *  G  T  R  K  *  C  G  G  N  P  S  N  I  R  G  S  I  E  K  P  Q  H  *  V  G  *  *  G  S  E  T  L  R  H  G  C  *  A  R  Y  V  Q  S  S  H  S  G  I  *  G  Q  P  *  F  R  V  S  S  K  I  *  L  I  F  Y  *  Y  F  D  H  *  *  K  *  R  F  K  *  *  F  E  C  *  *  C  Q  I  R  N  *  S  C  *  A  R  D  G  A  A  V  I  Q  Q  R  P  I  R  C  W  *  L  S  S  I  G  W  S  D  A  T  *  D  A  G  S  C  W  R  N  *  *  *  Q  I  F  R  C  E  I  *  H  E  K  *  Q  C  R  S  G  F  C  *  R  F  Q  G  R  A  *  F  R  E  *  D  S  K  *  *  *  A  T  R  Y  T  V  *  K  S  *  N  F  R  *  C  *  R  A  *  F  V  T  H  E  N  *  G  I  C  G  R  Y  T  R  S  C  C  F  W  *  *  *  K  R :   F  *  Q  D  S  R  C  S  G  W  *  E  Y  G  K  D  *  L  G  S  V  F  C  *  *  F  H  G  G  G  C  S  R  D  K  T  C  G  F  *  S  Y  F  *  E  R  E  *  Q  D  *  *  V  Y  Y  G  N  D  R  R  A  Q  S  S  T  K  W  F  F  *  C  N  A  A  R  H  S  F  *  E  G  C  V  S  R  N  *  R  *  V  S  C  F  V  R  E  E  K  V  S  R :   *  S  R  R  W  E  *  R  A  C  K  K  A  A  *  M  E  H  *  E  D  C  *  T  P  K  F  *  Y  C  F  N  K  E  G  C  S  A  H  S  Y  Q  T  H  P  W  Q  D  *  L  Y  S  W  W  G  F  T  Q  G  A  L  C :   T  K  V  F  K  N  S  H  Y  F  S  Q  N  *  E  F  L  A  A  F  Y  A  E  S  C  A  R  A  P  C  K  D  W  *  S  L  Q  F  L  D  G  P  D  K  D  P  L  L  C  H   : V  F  F  G  R  R  S  H  R  D  Q  K  R  G  V  Q  S  P  M  A  T  K  W  W  S  S  P  G  C  R  F  C  *  S  S  T  G  A  N  Q  D  R  G  S  G  T  C  F  S  T  E  S  Y  Q  S  C  C  A  C  F  I  L  C  S  N  T  T  C  S  A  A  G  S  Q  T  T  S  *  V  G  T  F  T  H  T  P  A  T  S  C  S  S  *  C  S  S  N  K  R  D  A  A  F  T  C  C  *  *  K  *  S  P  Y  C  Y  F  G  *  P  L  Q  K  D  Q  S  H  S  P  Y  L  L  F  T  A  D  R  *  R  S  C  *  K  A  C  H  *  G  K  C  *  A  L  R  Y  *  V  N  K  G  A  C  *  M  D  L  *  S  G  V  L  V  *  C  *  K  L  Q  V  C  P  H  E  E  V  A  V  *  F  V  G  E  *  *  V  S  *  G  S  L  R  L  S  F  L  F  Y  F  W  F  V  T  V  C  R  L  W  L  L  L  G  A  S  L  N  C  I  L  L  W  F  E  D  T  S  E  C  A  D  Y  K  E  S  V  L  V  *  L  L  S  L  S  R  F  L  E  K  Y  L  N  I  N  H  L  S  Y  E  I  Y  Y  V  S  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105828" stop="106557"/>
                    <exon start="106650" stop="106952"/>
                    <exon start="107613" stop="107798"/>
                    <exon start="107891" stop="108042"/>
                    <exon start="108394" stop="108849"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1824</number_coding_nucleotides>
                  <number_encoded_amino_acids>608</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDGSIPVSSTRQDVEDMKISSYEGVLEDNLRGQENDVEVTPVTSEEALKNHSIKLDNEGLKLSDMDAEPDMSNPATQVYEVNPNLGSQVKSDSFSTDTLTINENKDLNDNLNADNVKLETEVVRQEMELQSSSKDLSGVGSSHPLDGQMPHEMQGLVGETDDDKSSDVKFSMKNDNADQVSVDVSKVEHDFESKTPNNSEQPDIQFEKARTLGDVEEPSLSPMKIEASAEDTHDLAVSGDDRKDFSKIADVVDGENMEKINLDQSSADDSMEEDVVETKHVDFDHISKKENDKTDEFITGMTEEPKVRPSGSSDAMQLDIPSEKVASQETKDKSLALSEKRKFQDEAGGGSKEPAKRQRRWNTEKTAEPQNSSIALTKKVVQPTPIKPILGRTNSTVGGDSPKERFVPKSSKTATTSLKIENFLRPFTLKAVQELLARTGEVCSFWMDQIKTHCYVTYSSVEEATETRNAVYNLQWPPNGGRLLVADFVDPQQVQTKIEGREPASPPKVTSPAVPASSFVQTPPAQQQGRKQQAELEHSLTRQPPPAPPSAPPTKEMLPSPVADKNDPPIVTLDDLFRKTKVTPRIYYLPLTDEEVAKKLAIRGNAKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="107326" e_stop="107798"/>
            <exon e_start="107891" e_stop="108042"/>
            <exon e_start="108394" e_stop="109212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.510" e_score="0.943"/>
          <exon-intron don_prob="0.538" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="107326" e_stop="107798" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.510">
            <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107891" e_stop="108042" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.538" acc_prob="0.950">
            <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="108394" e_stop="109212" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107326" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107326" stop="107798"/>
              <exon start="107891" stop="107958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107602" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107609" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107609" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107609" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107609" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107617" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107634" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107635" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107635" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107975" stop="108042"/>
              <exon start="108394" stop="108745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108677" stop="109212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417316" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108677" stop="109212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108692" stop="109204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108693" stop="109204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108693" stop="109197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432231" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG : TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG : TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTTAGATGGATCTGTAGAGTGGTGTTCTAGTGTAATGCTGAAAACTGCAAGTTTGCCCGCATGAAGAAGTTGCAGTCTAATTTGTAGGCGAGTAGTGAGTTTCTTGAGGCTCGTTGAGACTTTCCTTTCTTTTCTATTTTTGGTTTGTTACTGTTTGCAGACTTTGGTTGCTACTAGGTGCAAGTCTTAACTGTATTTTGCTTTGGTTTGAAGATACTTCTGAATGTGCAGATTATAAAGAATCTGTGTTAGTCTGACTTCTTTCTTTATCCAGATTTTTGGAGAAGTATTTGAATATTAATCATCTGAGTTATGAGATATATTATGTAAGTGGTATCA</gDNA_template>
            <first_frame> K  K  L  P  F  F  S  L  L  K  L  K  L  T  T  G  K  Q  L  R  L  C  L  L  G  C  A  Y  *  S  V  C  L  Y  N  E  I  S  D  T  N  G  R  Y  *  N  L  L  A  M  W  D  M  K  P  S  L  F  T  S  T  L  D  N  Y  S  D  N  G  E  *  E  Y  D  L  F  F  S  Y  S  I  I  W  F  L  K  I  F  D  F  F  W  I  L  C  R  *  S  R  R  W  E  *  R  A  C  K  K  A  A  *  M  E  H  *  E  D  C  *  T  P  K  F  *  Y  C  F  N  K  E  G  C  S  A  H  S  Y  Q  T  H  P  W  Q  D  *  L  Y  S  W  W  G  F  T  Q  G  A  L  C :   T  K  V  F  K  N  S  H  Y  F  S  Q  N  *  E  F  L  A  A  F  Y  A  E  S  C  A  R  A  P  C  K  D  W  *  S  L  Q  F  L  D  G  P  D  K  D  P  L  L  C  H   : V  F  F  G  R  R  S  H  R  D  Q  K  R  G  V  Q  S  P  M  A  T  K  W  W  S  S  P  G  C  R  F  C  *  S  S  T  G  A  N  Q  D  R  G  S  G  T  C  F  S  T  E  S  Y  Q  S  C  C  A  C  F  I  L  C  S  N  T  T  C  S  A  A  G  S  Q  T  T  S  *  V  G  T  F  T  H  T  P  A  T  S  C  S  S  *  C  S  S  N  K  R  D  A  A  F  T  C  C  *  *  K  *  S  P  Y  C  Y  F  G  *  P  L  Q  K  D  Q  S  H  S  P  Y  L  L  F  T  A  D  R  *  R  S  C  *  K  A  C  H  *  G  K  C  *  A  L  R  Y  *  V  N  K  G  A  C  *  M  D  L  *  S  G  V  L  V  *  C  *  K  L  Q  V  C  P  H  E  E  V  A  V  *  F  V  G  E  *  *  V  S  *  G  S  L  R  L  S  F  L  F  Y  F  W  F  V  T  V  C  R  L  W  L  L  L  G  A  S  L  N  C  I  L  L  W  F  E  D  T  S  E  C  A  D  Y  K  E  S  V  L  V  *  L  L  S  L  S  R  F  L  E  K  Y  L  N  I  N  H  L  S  Y  E  I  Y  Y  V  S  G  I  </first_frame>
            <second_frame>  K  N  C  L  F  F  H  C  *  S  *  S  S  Q  L  E  S  S  *  G  C  A  Y  *  V  V  L  T  R  V  C  V  C  I  M  K  F  L  I  P  M  A  G  I  R  I  F  L  Q  C  G  I  *  S  P  L  Y  L  H  Q  L  W  I  I  I  V  I  M  A  N  K  N  T  T  Y  S  F  L  I  L  *  F  G  F  L  R  F  L  T  S  F  G  F  F  V  D  E  A  G  G  G  S  K  E  P  A  K  R  Q  R  R  W  N  T  E  K  T  A  E  P  Q  N  S  S  I  A  L  T  K  K  V  V  Q  P  T  P  I  K  P  I  L  G  R  T  N  S  T  V  G  G  D  S  P  K  E  R  F   : V  P  K  S  S  K  T  A  T  T  S  L  K  I  E  N  F  L  R  P  F  T  L  K  A  V  Q  E  L  L  A  R  T  G  E  V  C  S  F  W  M  D  Q  I  K  T  H  C  Y  V  T  :  Y  S  S  V  E  E  A  T  E  T  R  N  A  V  Y  N  L  Q  W  P  P  N  G  G  R  L  L  V  A  D  F  V  D  P  Q  Q  V  Q  T  K  I  E  G  R  E  P  A  S  P  P  K  V  T  S  P  A  V  P  A  S  S  F  V  Q  T  P  P  A  Q  Q  Q  G  R  K  Q  Q  A  E  L  E  H  S  L  T  R  Q  P  P  P  A  P  P  S  A  P  P  T  K  E  M  L  P  S  P  V  A  D  K  N  D  P  P  I  V  T  L  D  D  L  F  R  K  T  K  V  T  P  R  I  Y  Y  L  P  L  T  D  E  E  V  A  K  K  L  A  I  R  G  N  A  K  P  *  D  I  R  *  I  K  G  H  V  R  W  I  C  R  V  V  F  *  C  N  A  E  N  C  K  F  A  R  M  K  K  L  Q  S  N  L  *  A  S  S  E  F  L  E  A  R  *  D  F  P  F  F  S  I  F  G  L  L  L  F  A  D  F  G  C  Y  *  V  Q  V  L  T  V  F  C  F  G  L  K  I  L  L  N  V  Q  I  I  K  N  L  C  *  S  D  F  F  L  Y  P  D  F  W  R  S  I  *  I  L  I  I  *  V  M  R  Y  I  M  *  V  V  S </second_frame>
            <third_frame>   K  I  A  F  F  F  I  V  K  V  E  A  H  N  W  K  A  A  K  V  V  L  T  R  L  C  L  L  E  C  V  S  V  *  *  N  F  *  Y  Q  W  Q  V  L  E  S  S  C  N  V  G  Y  E  A  L  S  I  Y  I  N  F  G  *  L  *  *  *  W  R  I  R  I  R  L  I  L  F  L  F  Y  N  L  V  S  *  D  F  *  L  L  L  D  S  L  *  M  K  Q  E  V  G  V  K  S  L  Q  K  G  S  V  D  G  T  L  R  R  L  L  N  P  K  I  L  V  L  L  *  Q  R  R  L  F  S  P  L  L  S  N  P  S  L  A  G  L  T  L  Q  L  V  G  I  H  P  R  S  A  L  :  Y  Q  S  L  Q  K  Q  P  L  L  L  S  K  L  R  I  S  C  G  L  L  R  *  K  L  C  K  S  S  L  Q  G  L  V  K  S  A  V  S  G  W  T  R  *  R  P  I  A  M  S  R :   I  L  R  *  K  K  P  Q  R  P  E  T  R  C  T  I  S  N  G  H  Q  M  V  V  V  S  W  L  Q  I  L  L  I  L  N  R  C  K  P  R  *  R  V  G  N  L  L  L  H  R  K  L  P  V  L  L  C  L  L  H  P  L  F  K  H  H  L  L  S  S  R  V  A  N  N  K  L  S  W  N  I  H  S  H  A  S  H  L  L  L  L  L  V  L  L  Q  Q  K  R  C  C  L  H  L  L  L  I  K  M  I  P  L  L  L  L  W  M  T  S  S  E  R  P  K  S  L  P  V  S  I  I  Y  R  *  Q  M  K  K  L  L  K  S  L  P  L  G  E  M  L  S  L  E  I  L  G  K  *  R  G  M  L  D  G  S  V  E  W  C  S  S  V  M  L  K  T  A  S  L  P  A  *  R  S  C  S  L  I  C  R  R  V  V  S  F  L  R  L  V  E  T  F  L  S  F  L  F  L  V  C  Y  C  L  Q  T  L  V  A  T  R  C  K  S  *  L  Y  F  A  L  V  *  R  Y  F  *  M  C  R  L  *  R  I  C  V  S  L  T  S  F  F  I  Q  I  F  G  E  V  F  E  Y  *  S  S  E  L  *  D  I  L  C  K  W  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107570" stop="107798"/>
                    <exon start="107891" stop="108042"/>
                    <exon start="108394" stop="108849"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFLRFLTSFGFFVDEAGGGSKEPAKRQRRWNTEKTAEPQNSSIALTKKVVQPTPIKPILGRTNSTVGGDSPKERFVPKSSKTATTSLKIENFLRPFTLKAVQELLARTGEVCSFWMDQIKTHCYVTYSSVEEATETRNAVYNLQWPPNGGRLLVADFVDPQQVQTKIEGREPASPPKVTSPAVPASSFVQTPPAQQQGRKQQAELEHSLTRQPPPAPPSAPPTKEMLPSPVADKNDPPIVTLDDLFRKTKVTPRIYYLPLTDEEVAKKLAIRGNAKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="109177" PGL_stop="108815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109177" e_stop="108815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="109177" e_stop="108815" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="108815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTAATATTCAAATACTTCTCCAAAAATCTGGATAAAGAAAGAAGTCAGACTAACACAGATTCTTTATAATCTGCACATTCAGAAGTATCTTCAAACCAAAGCAAAATACAGTTAAGACTTGCACCTAGTAGCAACCAAAGTCTGCAAACAGTAACAAACCAAAAATAGAAAAGAAAGGAAAGTCTCAACGAGCCTCAAGAAACTCACTACTCGCCTACAAATTAGACTGCAACTTCTTCATGCGGGCAAACTTGCAGTTTTCAGCATTACACTAGAACACCACTCTACAGATCCATCTAACATGCCCCTTTATTTACCTAATATCTCAAGGCTTAGCATTTCCCCTAATGGCAAGCTTTT</gDNA_template>
            <first_frame> *  L  I  F  K  Y  F  S  K  N  L  D  K  E  R  S  Q  T  N  T  D  S  L  *  S  A  H  S  E  V  S  S  N  Q  S  K  I  Q  L  R  L  A  P  S  S  N  Q  S  L  Q  T  V  T  N  Q  K  *  K  R  K  E  S  L  N  E  P  Q  E  T  H  Y  S  P  T  N  *  T  A  T  S  S  C  G  Q  T  C  S  F  Q  H  Y  T  R  T  P  L  Y  R  S  I  *  H  A  P  L  F  T  *  Y  L  K  A  *  H  F  P  *  W  Q  A  F </first_frame>
            <second_frame>  D  *  Y  S  N  T  S  P  K  I  W  I  K  K  E  V  R  L  T  Q  I  L  Y  N  L  H  I  Q  K  Y  L  Q  T  K  A  K  Y  S  *  D  L  H  L  V  A  T  K  V  C  K  Q  *  Q  T  K  N  R  K  E  R  K  V  S  T  S  L  K  K  L  T  T  R  L  Q  I  R  L  Q  L  L  H  A  G  K  L  A  V  F  S  I  T  L  E  H  H  S  T  D  P  S  N  M  P  L  Y  L  P  N  I  S  R  L  S  I  S  P  N  G  K  L   </second_frame>
            <third_frame>   I  N  I  Q  I  L  L  Q  K  S  G  *  R  K  K  S  D  *  H  R  F  F  I  I  C  T  F  R  S  I  F  K  P  K  Q  N  T  V  K  T  C  T  *  *  Q  P  K  S  A  N  S  N  K  P  K  I  E  K  K  G  K  S  Q  R  A  S  R  N  S  L  L  A  Y  K  L  D  C  N  F  F  M  R  A  N  L  Q  F  S  A  L  H  *  N  T  T  L  Q  I  H  L  T  C  P  F  I  Y  L  I  S  Q  G  L  A  F  P  L  M  A  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109020" stop="108817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTKNRKERKVSTSLKKLTTRLQIRLQLLHAGKLAVFSITLEHHSTDPSNMPLYLPNISRLSISPNGKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="110728" PGL_stop="112578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110728" e_stop="110936"/>
            <exon e_start="111038" e_stop="111139"/>
            <exon e_start="111988" e_stop="112056"/>
            <exon e_start="112163" e_stop="112578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110728" e_stop="110936" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111038" e_stop="111139" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111988" e_stop="112056" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.814">
            <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.918">
            <gDNA_exon_boundary e_start="112163" e_stop="112578" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110728" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416287" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110728" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110728" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110729" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561578" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110729" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110729" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110730" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110732" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110747" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110750" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110759" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110759" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110761" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110762" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110763" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110765" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110765" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110766" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110766" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110770" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110770" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110770" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110771" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110774" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110776" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110776" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110776" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110776" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110776" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110777" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110777" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110777" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110783" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578018" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110786" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110788" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110790" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110837" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110839" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110881" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110881" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110926" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110926" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111082" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111086" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111087" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111995" stop="112056"/>
              <exon start="112163" stop="112406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111999" stop="112056"/>
              <exon start="112163" stop="112357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112040" stop="112056"/>
              <exon start="112163" stop="112578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413243" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAATTGCAGCCTCCCTCTTCCCTGTTTTTCCCCTTCCCCCTTTCCCCTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG : GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA : ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG : GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCTTGATAATTTTGCTTATCTGAATGAGTTCACTAGCTGATATACAATTTTGTTGAGCCAAGTCTCTCTGCCCCACAAAGGTACGGGAAAGTATTAGTGCACCTCTCACCTTCTCCGTACTCCACTTGTGAGATTATATTG</gDNA_template>
            <first_frame> Y  N  C  S  L  P  L  P  C  F  S  P  S  P  F  P  L  S  F  T  D  L  C  V  I  K  N  G  D  Y  R  E  E  I  E  E  D  S  *  E  H  *  Q  Q  I  G  S  R  N  E  E  W  K  V  H  S  W  L  Q  D  C  S  Q  D  S  Q  D  L  K  R :   E  V  D  I  D  I  K  Q  L  P  T  F  E  E  I  *  D  *  V  L  C  Y  A  R  *  S  W  C  S  P  F  Q  W  K :   Q  C  *  S  W  Y  S  M  W  K  V  P  P  C  V  M  P  E  H  H  *  P  R :   *  F  R  H  Y  Q  V  S  A  W  R  S  V  R  V  D  D  L  V  V  I  L  F  K  Q  F  R  K  C  F  A  G  L  L  *  T  I  L  L  M  L  R  E  S  V  V  S  F  C  S  L  C  F  G  V  I  L  R  F  *  S  I  L  V  L  S  S  F  V  G  F  I  I  S  P  Y  V  C  *  G  Q  I  H  Y  D  L  F  I  D  Q  F  S  L  I  I  L  L  I  *  M  S  S  L  A  D  I  Q  F  C  *  A  K  S  L  C  P  T  K  V  R  E  S  I  S  A  P  L  T  F  S  V  L  H  L  *  D  Y  I  </first_frame>
            <second_frame>  T  I  A  A  S  L  F  P  V  F  P  L  P  P  F  P  L  V  S  Q  I  F  V  *  S  R  M  V  T  T  G  K  K  S  K  R  T  H  E  S  I  N  N  R  L  A  L  V  M  K  S  G  K  Y  T  L  G  Y  K  T  V  L  K  T  L  R  T  S  K   : G  K  L  I  L  I  S  N  N  C  P  P  L  R  K  S  E  I  E  Y  Y  A  M  L  A  K  V  G  V  H  H  F  N  G   : N  N  V  D  L  G  T  A  C  G  K  F  H  R  V  S  C  L  S  I  I  D  P   : G  D  S  D  I  I  K  S  L  P  G  D  Q  *  E  L  M  I  *  *  S  F  S  L  N  N  L  E  N  V  L  R  G  C  S  K  P  F  Y  *  C  *  E  N  L  *  Y  L  F  V  L  C  V  L  E  L  Y  *  D  S  R  V  F  W  Y  Y  L  V  L  L  V  L  S  F  L  H  M  F  V  E  A  K  Y  I  M  I  Y  S  *  I  N  F  P  *  *  F  C  L  S  E  *  V  H  *  L  I  Y  N  F  V  E  P  S  L  S  A  P  Q  R  Y  G  K  V  L  V  H  L  S  P  S  P  Y  S  T  C  E  I  I  L </second_frame>
            <third_frame>   Q  L  Q  P  P  S  S  L  F  F  P  F  P  L  S  P  *  F  H  R  S  L  C  N  Q  E  W  *  L  P  G  R  N  R  R  G  L  M  R  A  L  T  T  D  W  L  S  *  *  R  V  E  S  T  L  L  V  T  R  L  F  S  R  L  S  G  P  Q  K  :  G  S  *  Y  *  Y  Q  T  T  A  H  L  *  G  N  L  R  L  S  I  M  L  C  S  L  K  L  V  F  T  I  S  M  E  :  T  M  L  I  L  V  Q  H  V  E  S  S  T  V  C  H  A  *  A  S  L  T  Q  :  V  I  P  T  L  S  S  L  C  L  E  I  S  K  S  *  *  S  S  S  H  S  L  *  T  I  *  K  M  F  C  G  A  A  L  N  H  F  T  D  V  E  R  I  C  S  I  F  L  F  F  V  F  W  S  Y  T  E  I  L  E  Y  F  G  I  I  *  F  C  W  F  Y  H  F  S  I  C  L  L  R  P  N  T  L  *  F  I  H  R  S  I  F  L  D  N  F  A  Y  L  N  E  F  T  S  *  Y  T  I  L  L  S  Q  V  S  L  P  H  K  G  T  G  K  Y  *  C  T  S  H  L  L  R  T  P  L  V  R  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110801" stop="110936"/>
                    <exon start="111038" stop="111139"/>
                    <exon start="111988" stop="112056"/>
                    <exon start="112163" stop="112203"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRMVTTGKKSKRTHESINNRLALVMKSGKYTLGYKTVLKTLRTSKGKLILISNNCPPLRKSEIEYYAMLAKVGVHHFNGNNVDLGTACGKFHRVSCLSIIDPGDSDIIKSLPGDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="128710" PGL_stop="129278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128710" e_stop="129278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="128710" e_stop="129278" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128710" stop="129278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128712" stop="129123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128781" stop="129199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128781" stop="129074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTTCTTCCTGTAAAGATTCACGTTAAACTTTCCAATTTGATCTCCTCTTCTTCTTCTTTTTTCTACTTTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGTTAAAATTGAGTCTTTTGTTCATTTAAGTTTTTGATCTGTTGGGGGTATTCTTGGAAGTTTGTGGTTGTTGTTTGGTGAATTGATGAGAGTTTGAAGTGGATTGGTGATTGTGAGAGATTGTTTGAATGGCTTTAAA</gDNA_template>
            <first_frame> Y  F  S  S  C  K  D  S  R  *  T  F  Q  F  D  L  L  F  F  F  F  F  L  L  F  F  Q  H  Q  A  I  Y  S  T  Q  E  T  N  K  F  L  T  L  *  A  D  P  *  I  F  *  L  I  H  L  L  *  F  F  Y  F  L  I  F  P  F  L  E  A  L  L  R  K  T  H  K  K  *  F  I  S  E  I  N  H  S  V  F  L  V  I  W  V  L  R  D  L  N  F  L  F  S  F  Q  S  C  N  L  F  S  V  L  L  F  G  G  F  L  D  L  G  W  K  K  G  V  N  Q  K  V  G  F  *  D  F  L  G  F  G  C  C  G  Y  W  L  K  L  S  L  L  F  I  *  V  F  D  L  L  G  V  F  L  E  V  C  G  C  C  L  V  N  *  *  E  F  E  V  D  W  *  L  *  E  I  V  *  M  A  L   </first_frame>
            <second_frame>  I  F  L  P  V  K  I  H  V  K  L  S  N  L  I  S  S  S  S  S  F  F  Y  F  S  F  N  I  K  Q  F  I  A  P  K  K  Q  T  S  F  S  L  F  K  L  T  H  R  F  F  D  *  F  I  F  S  D  S  F  I  F  S  Y  F  H  F  L  K  L  F  *  E  K  P  T  K  N  D  S  F  L  K  S  I  T  L  F  S  W  L  F  G  Y  *  G  I  *  I  F  Y  F  L  S  K  V  A  I  F  S  V  Y  C  Y  L  G  V  F  L  I  W  V  G  K  K  G  *  I  K  K  L  V  F  E  I  F  L  D  L  G  V  V  G  I  G  *  N  *  V  F  C  S  F  K  F  L  I  C  W  G  Y  S  W  K  F  V  V  V  V  W  *  I  D  E  S  L  K  W  I  G  D  C  E  R  L  F  E  W  L  *  </second_frame>
            <third_frame>   F  F  F  L  *  R  F  T  L  N  F  P  I  *  S  P  L  L  L  L  F  S  T  F  L  S  T  S  S  N  L  *  H  P  R  N  K  Q  V  S  H  S  L  S  *  P  I  D  F  L  I  D  S  S  S  L  I  L  L  F  S  H  I  S  I  S  *  S  S  S  K  K  N  P  Q  K  M  I  H  F  *  N  Q  S  L  C  F  L  G  Y  L  G  I  E  G  F  E  F  F  I  F  F  P  K  L  Q  S  F  Q  C  I  V  I  W  G  F  S  *  F  G  L  E  K  R  G  E  S  K  S  W  F  L  R  F  S  W  I  W  V  L  W  V  L  V  K  I  E  S  F  V  H  L  S  F  *  S  V  G  G  I  L  G  S  L  W  L  L  F  G  E  L  M  R  V  *  S  G  L  V  I  V  R  D  C  L  N  G  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0064G18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="131076" PGL_stop="130348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131076" e_stop="130348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131076" e_stop="130348" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131076" stop="130348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131066" stop="130413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131065" stop="130413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131042" stop="130413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTCAAAAATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGAATAACTTAAGATTTCCTTTATATCATTCCACTGTACTTGCACATTCTTACGAATAAACAGAAAGT</gDNA_template>
            <first_frame> C  F  K  N  I  C  N  L  S  L  L  L  L  I  H  L  F  I  F  G  *  F  V  R  S  S  V  S  C  Q  L  I  W  K  C  L  V  A  G  S  *  P  I  F  K  G  M  S  C  Y  *  S  *  L  *  R  F  R  I  *  K  L  M  S  E  L  L  S  C  R  T  H  S  C  Q  L  I  Y  Q  Q  K  E  K  K  N  Q  S  E  L  F  R  M  K  D  *  R  P  E  K  M  F  N  S  L  T  N  Q  L  K  K  E  E  L  W  R  K  G  L  C  R  H  L  N  H  H  *  V  E  L  P  *  R  E  P  S  V  K  I  Q  V  Q  Q  G  E  R  R  S  K  W  S  Y  Q  F  L  M  E  S  S  I  Q  Q  Y  L  Q  I  G  Y  Q  L  W  R  N  I  L  T  C  M  T  C  Q  M  I  E  G  L  D  L  L  K  *  S  *  L  L  L  Q  K  R  W  *  S  P  Q  V  R  V  L  M  Y  Y  K  T  I  *  A  *  F  T  N  I  A  N  N  L  R  F  P  L  Y  H  S  T  V  L  A  H  S  Y  E  *  T  E  S </first_frame>
            <second_frame>  V  S  K  I  F  V  I  S  L  F  F  S  S  S  I  S  S  F  L  V  N  S  S  G  H  Q  Y  H  V  N  S  F  G  N  A  *  *  R  E  A  N  R  Y  S  K  G  *  V  A  I  E  V  N  C  R  G  S  E  Y  K  N  S  C  Q  S  S  *  V  A  E  L  T  A  A  N  *  F  T  S  K  R  K  K  R  I  S  P  S  C  F  A  *  R  T  R  D  R  R  R  C  S  T  A  *  P  T  N  *  K  K  R  S  C  G  E  R  A  S  A  D  T  S  T  T  T  E  *  N  F  P  K  E  N  P  L  *  K  S  R  Y  N  R  G  K  E  G  Q  N  G  V  T  S  F  *  W  K  A  Q  S  N  N  I  C  R  L  A  I  S  Y  G  G  I  F  *  L  V  *  L  V  R  *  S  K  G  *  I  C  *  N  E  A  N  Y  S  C  K  R  G  G  E  V  H  K  *  E  F  *  C  I  I  K  Q  S  K  L  N  L  P  I  L  R  I  T  *  D  F  L  Y  I  I  P  L  Y  L  H  I  L  T  N  K  Q  K   </second_frame>
            <third_frame>   F  Q  K  Y  L  *  S  L  S  S  S  P  H  P  S  L  H  F  W  L  I  R  Q  V  I  S  I  M  S  T  H  L  E  M  P  S  S  G  K  L  T  D  I  Q  R  D  E  L  L  L  K  L  I  V  E  V  Q  N  I  K  T  H  V  R  A  L  E  L  Q  N  S  Q  L  P  T  N  L  P  A  K  G  K  K  E  S  V  R  V  V  S  H  E  G  L  E  T  G  E  D  V  Q  Q  L  D  Q  P  T  E  K  R  G  V  V  A  K  G  P  L  Q  T  P  Q  P  P  L  S  R  T  S  L  K  R  T  L  C  E  N  P  G  T  T  G  G  K  K  V  K  M  E  L  P  V  F  N  G  K  L  N  P  T  I  F  A  D  W  L  S  A  M  E  E  Y  F  D  L  Y  D  L  S  D  D  R  R  V  R  F  A  K  M  K  L  T  T  L  A  K  E  V  V  K  S  T  S  K  S  S  N  V  L  *  N  N  L  S  L  I  Y  Q  Y  C  E  *  L  K  I  S  F  I  S  F  H  C  T  C  T  F  L  R  I  N  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131056" stop="130445"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSSSPHPSLHFWLIRQVISIMSTHLEMPSSGKLTDIQRDELLLKLIVEVQNIKTHVRALELQNSQLPTNLPAKGKKESVRVVSHEGLETGEDVQQLDQPTEKRGVVAKGPLQTPQPPLSRTSLKRTLCENPGTTGGKKVKMELPVFNGKLNPTIFADWLSAMEEYFDLYDLSDDRRVRFAKMKLTTLAKEVVKSTSKSSNVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 219 chains have been computed
$ 
$ memory statistics:
$ 250136 bytes spliced alignments in total
$ 119 spliced alignments have been stored
$ 2101 bytes was the average size of a spliced alignment
$ 22360 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1720 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 247 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 08:43:06
-->
