<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:16:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701646" ref_strand="+" ref_description="SGN-E701646 [FA16CC04]">
      <seq>ttttagacgatatgttgcttgccggcgttagtccaaatgagtacacatatacaacgattatgcatggttatgcatctcttggtgatattgaaaaagcttgtgaatatttttcaaaaattaaaaatgagggtttagagctcgacatatatacatatgaggcgttactcaaggcatgctgtaaatcaggcaggatgcaaagtgctttgacggtgacaaaagaaatgagtgccaaaagcatcccaaggaatacctttgtttataacatattaattgatggatgggctcgacgaggtgatgtctgggaggctgctgacctgatgcaacagatgagacaagaaggggttccacctgacatccatacattcacgtcattcataaatgcttgttgtaaagctggagaaatgcaaagagcaatgaaagcagttgaagagatggaaactgttgggatcaaacctaacttaaagacctataccactcttatacatggttgggcacgggcttctcttcccgagaagggtttgaaatgttttgaacagatgaagcagtctggtttgaaacctgacaaagctgtataccactgtttaatgacatcattgttgtcaagggcggcagttgctgatcaagattacattataacgagaatccaacatgtttgtgaagagatggtggagtctggattgactgttgatatgggaactgcagttcactggtccaagtgcttgagaaaaattgagaggactggtggtgatataacaaaatcccttncaaagaccttcccacctgattggagttctcaccgaactcttaatggaacatcaaatgacaacgagatttgaggaagggtcagacagtagtgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="+" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="677" stop="2773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="977" g_stop="1253" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1254" i_stop="1502" i_length="249">
            <donor d_prob="0.394" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1503" g_stop="1632" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="407" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1633" i_stop="2022" i_length="390">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2023" g_stop="2473" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="859" r_length="452" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="+" ref_id="SGN-E701646" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="977" e_stop="1253"/>
          <exon e_start="1503" e_stop="1632"/>
          <exon e_start="2023" e_stop="2473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGACGATATGTTGCTTGCCGGCGTTGGTCCAAATGAGTACACATATACAACGATTATGCATGGTTATGCATCTCTTGGTGATATTGAAAAAGCTTGTGAATATTTTTCAAAAATTAAAAATGAGGGTTTAGAGCTCGACATATATACATATGAGGCGTTACTCAAGGCATGCTGTAAATCAGGCAGGATGCAAAGTGCTTTGACGGTGACAAAAGAAATGAGTGCCAAAAGCATCCCAAGGAATACCTTTGTTTATAACATATTAATTGATGGGTATGGTTAGATTTACAGTTAATGTGTACCTGTTCATCATGCTGCATTTGTTAGGATCATAGCTTACATTTTATACTTTAATAAACCTAGGACCATTACTCAACGGAACAAAAACAGAAGGAAAGAACGCCGATTAGCATAATTTAAATTTCCACTTTCCCTACTCTCCAGAGGTTCCTTTGTTCATTCGCCTCTCTTGTTACTAGACCATGATTCTCCTCCTTTCTTCTGTATTTCTTGTTGATACAGATGGGCTCGACGAGGTGATGTCTGGGAGGCTGCTGACCTGATGCAACAGATGAGACAAGAAGGGGTTCCACCTGACATCCATACATTCACGTCATTCATAAATGCTTGTTGTAAAGCTGGAGAAATGCAAGTATGTACTTGATGATAGTTTTCTTAATGCCTGTGGTGAATATGTTGAAATCATTGGTTACTTCGTATGCTTATCAATAGTTTCTTATTACGCATTTTAAAGTGGAGCAACTATTATGCAGTGCAACAACTATTACTACTACGCCCAAGTTATTTGACATATATTTCATCCACATGACATTGAGTTAGCAACTTTATGGTCCTAATAATACTTGGCCTGCAAGGTTTATTTGCATTCAGATGCTTTCAGGAATTTGATTTTAGTTGCTTTTCGTTATCTTAATAGGTCTTTAAATCGTGTCTTTCCTTAGCAAACAAAATTATGTACTGTTTTATCTTATTACAAGTAAAAACCAAAAGATTCTGATCAATGTTTTCATGTGGTTTACAGAGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGA-TTGAGGAAGGGTCAGACAGTAGTGACG</genome_strand>
        <mrna_strand>TTTTAGACGATATGTTGCTTGCCGGCGTTAGTCCAAATGAGTACACATATACAACGATTATGCATGGTTATGCATCTCTTGGTGATATTGAAAAAGCTTGTGAATATTTTTCAAAAATTAAAAATGAGGGTTTAGAGCTCGACATATATACATATGAGGCGTTACTCAAGGCATGCTGTAAATCAGGCAGGATGCAAAGTGCTTTGACGGTGACAAAAGAAATGAGTGCCAAAAGCATCCCAAGGAATACCTTTGTTTATAACATATTAATTGATGG.........................................................................................................................................................................................................................................................ATGGGCTCGACGAGGTGATGTCTGGGAGGCTGCTGACCTGATGCAACAGATGAGACAAGAAGGGGTTCCACCTGACATCCATACATTCACGTCATTCATAAATGCTTGTTGTAAAGCTGGAGAAATGCAA......................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCACTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTNCAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTTGAGGAAGGGTCAGACAGTAGTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389449" ref_strand="+" ref_description="SGN-E389449 [TUS-4-A23]">
      <seq>gagaaatgcaaagagcaatgaaagcagttgaagagatggaaactgttgggatcaaacctaacttaaagacctataccactcttatacatggttgggcacgggcttctcttcccgagaagggtttgaaatgttttgaacagatgaagcagtctggtttgaaacctgacaaagctgtataccactgtttaatgacatcattgttgtcaagggcggcagttgctgatcaagattacattataacgagaatccaacatgtttgtgaagagatggtggagtctggattgactgttgatatgggaactgcagttcattggtccaagtgcttgagaaaaattgagaggactggtggtgatataacaaaatcccttcaaaagaccttcccacctgattggagttctcaccgaactcttaatggaacatcaaatgacaacgagattgaggaagggtcagacagtagtgacgatgaacgtagttctttttatgagataaagaaatgctaacaatgattcagatttctacgaagaggcattggcataatctttatcagccctagctgctgcttggtcccaagagtctttaggtgtatagatggaattttgccactagtttggcttgatcaagattgttttattttttcgtaaacaacctctctatttctacgaggtaggggtaaggtttgtgtacactctacccttcttgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="+" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="1718" stop="3015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2023" g_stop="2715" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="704" r_length="693" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="+" ref_id="SGN-E389449" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2023" e_stop="2715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGCTAACAATGATTCAGATTTCTACGAAGAGGCATTGGCATAATCTTTATCAGCCCTAGCTGCTGCTTGGTCCCAAGAGTCTTTAGGTGTATAGATGGAATTTTGCCACTAGTTTGGCTTGATCAAGATTGTTTTATTTTTTCGTAAACAACCTCTCTATTTCTACGAGGTAAGGGTAAGGTTTGTGTACACTCTACCCTTCTTGAACCT</genome_strand>
        <mrna_strand>AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGCTAACAATGATTCAGATTTCTACGAAGAGGCATTGGCATAATCTTTATCAGCCCTAGCTGCTGCTTGGTCCCAAGAGTCTTTAGGTGTATAGATGGAATTTTGCCACTAGTTTGGCTTGATCAAGATTGTTTTATTTTTTCGTAAACAACCTCTCTATTTCTACGAGGTAGGGGTAAGGTTTGTGTACACTCTACCCTTCTTGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550289" ref_strand="+" ref_description="SGN-E550289 [TUS-5-A35]">
      <seq>gagaaatgcaaagagcaatgaaagcagttgaagagatggaaactgttgggatcaaacctaacttaaagacctataccactcttatacatggttgggcacgggcttctcttcccgagaagggtttgaaatgttttgaacagatgaagcagtctggtttgaaacctgacaaagctgtataccactgtttaatgacatcattgttgtcaagggcggcagttgctgatcaagattacattataacgagaatccaacatgtttgtgaagagatggtggagtctggattgactgttgatatgggaactgcagttcattggtccaagtgcttgagaaaaattgagaggactggtggtgatataacaaaatcccttcaaaagaccttcccacctgattggagttctcaccgaactcttaatggaacatcaaatgacaacgagattgaggaagggtcagacagtagtgacgatgaacgtagttctttttatgagataaagaaatgctaacaatgattcagatttctacgaagaggcattggcataatctttatcagccctagctgctgcttggtccccagagtctttaggtgtatagatggaattttgccactagtttggcttggatcagattgttttattttttcgntaacaacctctctatttctacgaggtaaggggtaggtttgtgtacactctacccttcttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="+" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="1718" stop="3013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2023" g_stop="2713" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="702" r_length="691" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="+" ref_id="SGN-E550289" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2023" e_stop="2713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGCTAACAATGATTCAGATTTCTACGAAGAGGCATTGGCATAATCTTTATCAGCCCTAGCTGCTGCTTGGTCCCAAGAGTCTTTAGGTGTATAGATGGAATTTTGCCACTAGTTTGGCTT-GATCAAGATTGTTTTATTTTTTCGTAAACAACCTCTCTATTTCTACGAGGTAAGGGTAAGGTTTGTGTACACTCTACCCTTCTTGAAC</genome_strand>
        <mrna_strand>AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGCTAACAATGATTCAGATTTCTACGAAGAGGCATTGGCATAATCTTTATCAGCCCTAGCTGCTGCTTGGTCCCCAGAGTCTTTAGGTGTATAGATGGAATTTTGCCACTAGTTTGGCTTGGATC-AGATTGTTTTATTTTTTCGNTAACAACCTCTCTATTTCTACGAGGTAAGGGGTAGGTTTGTGTACACTCTACCCTTCTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209517" ref_strand="+" ref_description="SGN-E209517 [cLEC-54-D21]">
      <seq>agaaatgcaaagagcaatgaaagcagttgaagagatggaaactgttgggatcaaacctaacttaaagacctataccactcttatacatggttgggcacgggcttctcttcccgagaagggtttgaaatgttttgaacagatgaagcagtctggtttgaaacctgacaaagctgtataccactgtttaatgacatcattgttgtcaagggcggcagttgctgatcaagattacattataacgagaatccaacatgtttgtgaagagatggtggagtctggattgactgttgatatgggaactgcagttcattggtccaagtgcttgagaaaaattgagaggactggtggtgatataacaaaatcccttcaaaagaccttcccacctgattggagttctcaccgaactcttaatggaacatcaaatgacaacgagattgaggaagggtcagacagtagtgacgatgaacgtagttctttttatgagataaagaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="+" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="1718" stop="2808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2023" g_stop="2508" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="496" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="+" ref_id="SGN-E209517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2023" e_stop="2508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGC</genome_strand>
        <mrna_strand>AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389973" ref_strand="+" ref_description="SGN-E389973 [TUS-4-A23](-)">
      <seq>tcccgagaagggttgaaaatgttttgaacagatgaagcagtctggtttgaaacctgacaaagctgtataccactgtttaatgacatcattgttgtcaagggcggcagtgctgatcnaagattacattataacgagaatccaacatgtttgtgaagagatggtggagtctggattgactgttgatatgggaactgcagttcattggtccaagtgcttgagaaaaattgagaggactggtggtgatataacaaaatcccttcaaaagaccttcccacctgattggagttctcaccgaactcttaatggaacatcaaatgacaacgagattgaggaagggtcagacagtagtgacgatgaacgtagttctttttatgagataaagaaatgctaacaatgattcagatttctacgaagaggcattggcataatctttatcagccctagctgctgcttggtcccaagagtctttaggtgtatagatggaattttgccactagtttggcttgatcaagattgttttattttttcgtaaacaacctctctatttctacgaggtaagggtaaggtttgtgtacactctacccttcttgaaccttgggattacgttgggtatgtgattatttggcttgatcaagattgtgcaattgattccatattcttgaattgtaaatgtctctttttggttttagacttgaagtagctaaagggattagttttggatgtacaaatatgtattaaatttgtaacgattgtcaaatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="+" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="1821" stop="3183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2121" g_stop="2883" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="+" ref_id="SGN-E389973" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2121" e_stop="2883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATC-AAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGCTAACAATGATTCAGATTTCTACGAAGAGGCATTGGCATAATCTTTATCAGCCCTAGCTGCTGCTTGGTCCCAAGAGTCTTTAGGTGTATAGATGGAATTTTGCCACTAGTTTGGCTTGATCAAGATTGTTTTATTTTTTCGTAAACAACCTCTCTATTTCTACGAGGTAAGGGTAAGGTTTGTGTACACTCTACCCTTCTTGAACCTTGGGATTACGTTGGGTATGTGATTATTTGGCTTGATCAAGATTGTGCAATTGATTCCATATTCTTGAATTGTAAATGTCTCTTTTTGGTTTTAGACTTGAAGTAGCTAAAGGGATTAGTTTTGGATGTACAAATATGTATTAAATTTGTAACTTTTGTCAAATGCACA</genome_strand>
        <mrna_strand>TCCCGAGAAGGGTTGAAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAG-TGCTGATCNAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGCTAACAATGATTCAGATTTCTACGAAGAGGCATTGGCATAATCTTTATCAGCCCTAGCTGCTGCTTGGTCCCAAGAGTCTTTAGGTGTATAGATGGAATTTTGCCACTAGTTTGGCTTGATCAAGATTGTTTTATTTTTTCGTAAACAACCTCTCTATTTCTACGAGGTAAGGGTAAGGTTTGTGTACACTCTACCCTTCTTGAACCTTGGGATTACGTTGGGTATGTGATTATTTGGCTTGATCAAGATTGTGCAATTGATTCCATATTCTTGAATTGTAAATGTCTCTTTTTGGTTTTAGACTTGAAGTAGCTAAAGGGATTAGTTTTGGATGTACAAATATGTATTAAATTTGTAACGATTGTCAAATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422800" ref_strand="+" ref_description="SGN-E422800 [STM-41-C11]">
      <seq>aagccaaacaatcacatacccagtgtaatcccagggttcgagaagggtagagtacacacagaccttacccctacctcgtagaaatagagaagttgtttacgataaaataaaacaatcttgatcaagccaaactagtgtcaaaattccatatacacacctagggactcttgggcacaagcagcagctaggctgataaagattatgccaacgcctccttggagaaatctgaatcattgttagcatttctttacctcataaaaagaactacgttcatcgtcaccactgtctgacccttcctcattctcattgtcatttgatgttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="-" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="3048" stop="2122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2748" g_stop="2422" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="-" ref_id="SGN-E422800" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2748" e_stop="2422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAAATAATCACATACCCAACGTAATCCCAAGGTTCAAGAAGGGTAGAGTGTACACAAACCTTACCCTTACCTCGTAGAAATAGAGAGGTTGTTTACGAAAAAATAAAACAATCTTGATCAAGCCAAACTAGTGGCAAAATTCCATCTATACACCTAAAGACTCTTGGGACCAAGCAGCAGCTAGGGCTGATAAAGATTATGCCAATGCCTCTTCGTAGAAATCTGAATCATTGTTAGCATTTCTTTATCTCATAAAAAGAACTACGTTCATCGTCACTACTGTCTGACCCTTCCTCAATCTCGTTGTCATTTGATGTTCCATT</genome_strand>
        <mrna_strand>AAGCCAAACAATCACATACCCAGTGTAATCCCAGGGTTCGAGAAGGGTAGAGTACACACAGACCTTACCCCTACCTCGTAGAAATAGAGAAGTTGTTTACGATAAAATAAAACAATCTTGATCAAGCCAAACTAGTGTCAAAATTCCATATACACACCTAGGGACTCTTGGGCACAAGCAGCAGCTA-GGCTGATAAAGATTATGCCAACGCCTCCTTGGAGAAATCTGAATCATTGTTAGCATTTCTTTACCTCATAAAAAGAACTACGTTCATCGTCACCACTGTCTGACCCTTCCTCATTCTCATTGTCATTTGATGTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247950" ref_strand="+" ref_description="SGN-E247950 [cLEF-47-J22]">
      <seq>gaatttgaaaatggaggagattcgaattctcagctagctgctgttacaatgcgtataatgcaggctcttcaaaccaatttggatgggaaatctaagcagtataaggattctgctctgactcacttgttccttatgaacaatattcactatatggtcagatctgtccgcaggtctgaagccaaagacttattaggggatgactgggtgcaaagacaccggagagttgtacagcaacacgcaaatcaatataaaagaattgcttgggcgaagatccttcaatctctatcgattcaagggctaacatcatctggaggcagtagttctagtggtgtagatggacaaaatagcagtggagtttcaagatccaccgtaaaagaaaggttcaagatgttcaatgcacagtttgaggagcttcatcaaaggcaatctcaatgggctgttccagatactgagttgcgagagtcattgaggcttgcggttgctgaagttttgctgcctgcatacagatctttcatcaaacgctttgggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="-" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="6457" stop="4656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6157" g_stop="5988" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5987" i_stop="5890" i_length="98">
            <donor d_prob="0.519" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5889" g_stop="5790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="270" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5789" i_stop="5308" i_length="482">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5307" g_stop="5198" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="380" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5197" i_stop="5104" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5103" g_stop="4957" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="527" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="-" ref_id="SGN-E247950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6157" e_stop="5988"/>
          <exon e_start="5889" e_stop="5790"/>
          <exon e_start="5307" e_stop="5198"/>
          <exon e_start="5103" e_stop="4957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGAAAATGGAGGAGATTCGAATTCTCAGCTAGCTGCTGTTACAATGCGTATAATGCAGGCTCTTCAAACCAATTTGGATGGGAAATCTAAGCAGTATAAGGATTCTGCTCTGACTCACTTGTTCCTTATGAACAATATTCACTATATGGTCAGATCTGTCCGCAGGTTTGTTGAACAATATTCACTAATCATCGGGGTGAAGACCTCAAAGGTTATTGTATGTATTGCTTTATGTTAGGGTGCTTATCGTTTGTTGCTTTTAGGTCTGAAGCCAAAGACTTATTAGGGGATGACTGGGTGCAAAGACACCGGAGAGTTGTACAGCAACACGCAAATCAATATAAAAGAATTGCTTGGGCGAAGGTATTTCTCATCTCGTTTTGTGCTCCTTCCGATTCTCTGCCTCAAGAAAATGGGAAAATTTGTGTGTAGGGTTGGGGATAGAGGGGTTATGGAAGGGAGGGGACCAATTCAAATCTTAATTTTTGAATTAATTTTATCATATTAGAGCTTTTCCAAGTCAAGGTCAAGTTAATTTCAGTACCATAAAGGATTTTTTTTCTGGTGATAATTTGAATGGGCATTAGTCTTTCTGATTATGCTGTTTTTCACTTCTTCATTTCTTGTCTATGATTATGGTCTCAGTTAGAGTAATGATTGCCTTGCTTTCACTTGTTAAATAAATTGTAGTAGCCTCTTTCATCCAAATTTTGTGCTCTTTTTGAACTGTCTAATTTTTTCAGATGGTTGAATTAAGTGTTGCCACGAGCATGATCACAGTTTACATTAAATATGGAATTGGCCTATGATTGTCCTAATCAATACCTTGTTTTATTCTTGAGTAGATCCTTCAATCTCTATCGATTCAAGGGCTAACATCATCTGGAGGCAGTAGTTCTAGTGGTGTAGATGGACAAAATAGCAGTGGAGTTTCAAGATCCACCGTAAAAGAAAGGTAGGTTCTCAGGTTAATCATTTTATGAACTTCTGTTGACAGTCATGATCTAATCTTGTTTCTGGTATGAAATCTTCTTGTTACTCTTTATCAGGTTCAAGATGTTCAATGCACAGTTTGAGGAGCTTCATCAAAGGCAATCTCAATGGGCTGTTCCAGATACTGAGTTGCGAGAGTCATTGAGGCTTGCGGTTGCTGAAGTTTTGCTGCCTGCATACAGATCTTTCATCAAACGCTTTGG</genome_strand>
        <mrna_strand>GAATTTGAAAATGGAGGAGATTCGAATTCTCAGCTAGCTGCTGTTACAATGCGTATAATGCAGGCTCTTCAAACCAATTTGGATGGGAAATCTAAGCAGTATAAGGATTCTGCTCTGACTCACTTGTTCCTTATGAACAATATTCACTATATGGTCAGATCTGTCCGCAG..................................................................................................GTCTGAAGCCAAAGACTTATTAGGGGATGACTGGGTGCAAAGACACCGGAGAGTTGTACAGCAACACGCAAATCAATATAAAAGAATTGCTTGGGCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCAATCTCTATCGATTCAAGGGCTAACATCATCTGGAGGCAGTAGTTCTAGTGGTGTAGATGGACAAAATAGCAGTGGAGTTTCAAGATCCACCGTAAAAGAAAG..............................................................................................GTTCAAGATGTTCAATGCACAGTTTGAGGAGCTTCATCAAAGGCAATCTCAATGGGCTGTTCCAGATACTGAGTTGCGAGAGTCATTGAGGCTTGCGGTTGCTGAAGTTTTGCTGCCTGCATACAGATCTTTCATCAAACGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537976" ref_strand="+" ref_description="SGN-E537976 [TUS-56-N17]">
      <seq>agatttatactaattgggcaattactgtttactatcagggcaatcgattcctataattttttctaagagaattgcggacttcgtaggttttaggtctatattatgcaaaagtcctggagactgaagggtatatggaatgaggtgatatcaatcaactaagcttcttccaaatcagttgtaatcaaccaatggaatcccctatattttcttcttatggaaaggaacaccttgtagatagctgtcagtctttgttgatacaattgcctgacaaattgcactttttttttccagctatcaatcaacattgaagcaactatttcaagaatttgaaaatggaggagattcgaattctcagctagctgctgttacaatgcgtataatgcaggctcttcaaaccaatttggatgggaaatctaagcagtataaggattctgctctgactcacttgttccttatgaacaatattcactatatggtcagatctgtccgcaggtctgaagccaaagacttattaggggatgactgggtgcaaagacaccggagagttgtacagcaacacgcaaatcaatataaaagaattgcttgggcgaagatccttcaatctctatcgattcaagggctaacatcatctggaggcagtagttctagtggtgtagatggacaaaatagcagtggagtttcaagatccaccgtaaaagaaaggttcaagatgttcaatgcacagtttgaggagcttcatcaaaggcaatctcaatgggctgttccagatactgaggtgcgagagtcattgaggcttgcggttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="-" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="6779" stop="4699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6479" g_stop="5988" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5987" i_stop="5890" i_length="98">
            <donor d_prob="0.519" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5889" g_stop="5790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="592" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5789" i_stop="5308" i_length="482">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5307" g_stop="5198" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="702" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5197" i_stop="5104" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5103" g_stop="4999" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="807" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="-" ref_id="SGN-E537976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6479" e_stop="5988"/>
          <exon e_start="5889" e_stop="5790"/>
          <exon e_start="5307" e_stop="5198"/>
          <exon e_start="5103" e_stop="4999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTATACTAATTGGGCAATTACTGTTTACTATCAGGGCAATCGATTCCTATAATTTTTTCTAAGAGAATTGCGGACTTCGTAGGTTTTAGGTCTATATTATGCAAAAGTCCTGGAGACTGAAGGGTATATGGAATGAGGTGATATCAATCAACTAAGCTTCTTCCAAATCAGTTGTAATCAACCAATGGAATCCCCTATATTTTCTTCTTATGGAAAGGAACACCTTGTAGATAGCTGTCAGTCTTTGTTGATACAATTGCCTGACAAATTGCACTTTTTTTTTCCAGCTATCAATCAACATTGAAGCAACTATTTCAAGAATTTGAAAATGGAGGAGATTCGAATTCTCAGCTAGCTGCTGTTACAATGCGTATAATGCAGGCTCTTCAAACCAATTTGGATGGGAAATCTAAGCAGTATAAGGATTCTGCTCTGACTCACTTGTTCCTTATGAACAATATTCACTATATGGTCAGATCTGTCCGCAGGTTTGTTGAACAATATTCACTAATCATCGGGGTGAAGACCTCAAAGGTTATTGTATGTATTGCTTTATGTTAGGGTGCTTATCGTTTGTTGCTTTTAGGTCTGAAGCCAAAGACTTATTAGGGGATGACTGGGTGCAAAGACACCGGAGAGTTGTACAGCAACACGCAAATCAATATAAAAGAATTGCTTGGGCGAAGGTATTTCTCATCTCGTTTTGTGCTCCTTCCGATTCTCTGCCTCAAGAAAATGGGAAAATTTGTGTGTAGGGTTGGGGATAGAGGGGTTATGGAAGGGAGGGGACCAATTCAAATCTTAATTTTTGAATTAATTTTATCATATTAGAGCTTTTCCAAGTCAAGGTCAAGTTAATTTCAGTACCATAAAGGATTTTTTTTCTGGTGATAATTTGAATGGGCATTAGTCTTTCTGATTATGCTGTTTTTCACTTCTTCATTTCTTGTCTATGATTATGGTCTCAGTTAGAGTAATGATTGCCTTGCTTTCACTTGTTAAATAAATTGTAGTAGCCTCTTTCATCCAAATTTTGTGCTCTTTTTGAACTGTCTAATTTTTTCAGATGGTTGAATTAAGTGTTGCCACGAGCATGATCACAGTTTACATTAAATATGGAATTGGCCTATGATTGTCCTAATCAATACCTTGTTTTATTCTTGAGTAGATCCTTCAATCTCTATCGATTCAAGGGCTAACATCATCTGGAGGCAGTAGTTCTAGTGGTGTAGATGGACAAAATAGCAGTGGAGTTTCAAGATCCACCGTAAAAGAAAGGTAGGTTCTCAGGTTAATCATTTTATGAACTTCTGTTGACAGTCATGATCTAATCTTGTTTCTGGTATGAAATCTTCTTGTTACTCTTTATCAGGTTCAAGATGTTCAATGCACAGTTTGAGGAGCTTCATCAAAGGCAATCTCAATGGGCTGTTCCAGATACTGAGTTGCGAGAGTCATTGAGGCTTGCGGTTGCTGA</genome_strand>
        <mrna_strand>AGATTTATACTAATTGGGCAATTACTGTTTACTATCAGGGCAATCGATTCCTATAATTTTTTCTAAGAGAATTGCGGACTTCGTAGGTTTTAGGTCTATATTATGCAAAAGTCCTGGAGACTGAAGGGTATATGGAATGAGGTGATATCAATCAACTAAGCTTCTTCCAAATCAGTTGTAATCAACCAATGGAATCCCCTATATTTTCTTCTTATGGAAAGGAACACCTTGTAGATAGCTGTCAGTCTTTGTTGATACAATTGCCTGACAAATTGCACTTTTTTTTTCCAGCTATCAATCAACATTGAAGCAACTATTTCAAGAATTTGAAAATGGAGGAGATTCGAATTCTCAGCTAGCTGCTGTTACAATGCGTATAATGCAGGCTCTTCAAACCAATTTGGATGGGAAATCTAAGCAGTATAAGGATTCTGCTCTGACTCACTTGTTCCTTATGAACAATATTCACTATATGGTCAGATCTGTCCGCAG..................................................................................................GTCTGAAGCCAAAGACTTATTAGGGGATGACTGGGTGCAAAGACACCGGAGAGTTGTACAGCAACACGCAAATCAATATAAAAGAATTGCTTGGGCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCAATCTCTATCGATTCAAGGGCTAACATCATCTGGAGGCAGTAGTTCTAGTGGTGTAGATGGACAAAATAGCAGTGGAGTTTCAAGATCCACCGTAAAAGAAAG..............................................................................................GTTCAAGATGTTCAATGCACAGTTTGAGGAGCTTCATCAAAGGCAATCTCAATGGGCTGTTCCAGATACTGAGGTGCGAGAGTCATTGAGGCTTGCGGTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272910" ref_strand="+" ref_description="SGN-E272910 [cLEM-25-P1]">
      <seq>aggccgtcatcacctggacaccaggactctagtggtaagagtcatctgtccaatagtgatgcggagcaagatggtgcaggaaatgctgtcttcacaccgccaactcttatacctccaaggatcctgcctttactacatgatttagcccaacagatggttcaagctggccatcaacaacaatttataaaaatatacagggatacacgttctcccgtactggaagaaagtcttcgcagtttgggagtggaaaaacttagcaaagatgatgttcagaagatgcaatgggaagttctggaagctaaaattggaaattggattcattttatgcgaattgctgtcaaactgttatttgctggtgaacgtaaggtgtgtgatcaagttcttgaaggattcgattcactcaatgatcaatgttttgctgaagttactactgcgagtgttgctgtgttgcttagttttggtgatgccattgcaaagagcaaaagatcacctgagaagttatttgtgcttctagatatgtatgaaataatgcgggaacttcattcagagattgaatcacttttcagaggtaaagcttgcaatgaaattaaggaatctgcctttggtttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="-" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="10639" stop="7926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10342" g_stop="10146" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10145" i_stop="8966" i_length="1180">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8965" g_stop="8827" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="336" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8826" i_stop="8756" i_length="71">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8755" g_stop="8543" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="549" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8542" i_stop="8288" i_length="255">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8287" g_stop="8226" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="611" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="-" ref_id="SGN-E272910" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10342" e_stop="10146"/>
          <exon e_start="8965" e_stop="8827"/>
          <exon e_start="8755" e_stop="8543"/>
          <exon e_start="8287" e_stop="8226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCGTCATCACCTGGACACCAGGACTCTAGTGGTAAGAGTCATCTGTCCAATAGTAATGCGGAGCAAGATGGTGCAGGAAATGCTGTCTTCACACCGCCAACTCTTATACCTCCAAGGATCCTGCCTTTACTACATGATTTAGCCCAACAGATGGTTCAAGCTGGCCATCAACAACAATTTATAAAAATATACAGGTAATATCTATTTTTATTATGAACTATGTGATCATGTACGGACAATCTTTTACTCATTGTATCCTGGAGAAAAAATTAATCTACTGGCCTAAAAGCTAATGTCTTTCTCTCTATTAAGCAGTTCATGCAGAAAAATAGGTGAAGCTTAACATGAGGTAACTGCCTTACATGTTTTGTCAGTGTCTGGAGTTGAACTCATAAATAGTTGATATAGGTTCTGCTTGTTGCAGAAGTTTAAATGCTCCATACAGTAAATAATAGGTTGTTCATCAATATGATTATTATGGCTTTTATTATTCTTATGCTGGAGTTACAAGAACAAGAGCAGTAAAGATGCTTTTTTATATATGTAGAATACAATACCATGTACATATGTGCATCTTTTCCTTCTCATTCCTATTCGGGATATTTTAGAGCTGTGCACTGTCTTGTCAAAGCCAGATAATCCTGGACATGGCTAGAAACTGCTAAACTCAAGCCTCGAGCTTCAACAGTTTCTCAAGCAAAATGGCCCATTTCATTCTTAGGAATGAAATGAAAACTATTTTCCAGGTTGAAGATTTAATTACTCATTGACATCTATGTACTCTATCGAACTCAACAGAAAGCAAACAAAATAGTGCATACATGAGTGGCGGTGGAGTCTCCAGGAAGCTCACTTTTGGTTTATGATGATGACTGGAATAAAAGGAGAAAAGCTGTCTGAAAACAATTGTGTGTGTGCGGAAAGAGCTCTTGCTCGAAATCTCCAATAGTCTAGTCTAGTTGGTAAATCTGTGTTGTAACGACCTCAAGTTTTATATTACAACTCATTCCACCTTTATCTAGGAGTTCAAAGGTGAAATACTATGATGCCCTTTTCTGGAAAGATGGAAGACCTTCTAGTTGCTTCAACTTTGTTCATATTGAAACCCCCTGGAATAGAAAAGTAGAAGGAAATCAGTAGTTGTGGTTTAAGTACCTTTTCATTCAGTAAACTCTTTTATTTACATATAGAGAGTAGAGAGACCAAGGTGAGGAATGTAAAGCTGTGACTTCTGTGCTCTTATTGTTTAGCATAAGTAGTAGTTTCTTGGTAAATTTTACACGCACATAGCAACAATGTGTTTTGAAGTGCTATAGATTCCTTTACTCATTTCATTCCTTTTCTTATTCTTTTGATTTATAAATGTCTCAATAGGGATACACGTTCTCCCGTACTGGAAGAAAGTCTTCGCAGTTTGGGAGTGGAAAAACTTAGCAAAGATGATGTTCAGAAGATGCAATGGGAAGTTCTGGAAGCTAAAATTGGAAATTGGATTCATTTTATGCGAATTGCTGTAAGTTTTGTCAAATGCCTCTGGAAGTAGATTAAAGCTTGCCTTTGACTTTCTTATGTTCAATTGAACAGGTCAAACTGTTATTTGCTGGTGAACGTAAGGTGTGTGATCAAGTTCTTGAAGGATTCGATTCACTCAATGATCAATGTTTTGCTGAAGTTACTACTGCGAGTGTTGCTGTGTTGCTTAGTTTTGGTGATGCCATTGCAAAGAGCAAAAGATCACCTGAGAAGTTATTTGTGCTTCTAGATATGTATGAAATAATGCGGGAACTTCATTCAGAGGTATGAGATATACTAGCAAACAAGCATTTGATTCATTATATTATGCCTACATGGAGTACGGGACAAGAGCAAACAGACGACTATTATTCAAATTTCATGGTTATATTATTATATACTAACAATGTATAGTTCGAGCTCTACAACTAAGGATTTTATAGAACCTACCCAAAAAATAAAACTAAGGAGTTCGTAGAATCTTTCTCTAGCCTTCTGGTCTGCATATAAGATGAAGATATTGCGTATTTCTGTCTGCAGATTGAATCACTTTTCAGAGGTAAAGCTTGCAATGAAATTAAGGAATCTGCCTTTGGTTTGAC</genome_strand>
        <mrna_strand>AGGCCGTCATCACCTGGACACCAGGACTCTAGTGGTAAGAGTCATCTGTCCAATAGTGATGCGGAGCAAGATGGTGCAGGAAATGCTGTCTTCACACCGCCAACTCTTATACCTCCAAGGATCCTGCCTTTACTACATGATTTAGCCCAACAGATGGTTCAAGCTGGCCATCAACAACAATTTATAAAAATATACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATACACGTTCTCCCGTACTGGAAGAAAGTCTTCGCAGTTTGGGAGTGGAAAAACTTAGCAAAGATGATGTTCAGAAGATGCAATGGGAAGTTCTGGAAGCTAAAATTGGAAATTGGATTCATTTTATGCGAATTGCT.......................................................................GTCAAACTGTTATTTGCTGGTGAACGTAAGGTGTGTGATCAAGTTCTTGAAGGATTCGATTCACTCAATGATCAATGTTTTGCTGAAGTTACTACTGCGAGTGTTGCTGTGTTGCTTAGTTTTGGTGATGCCATTGCAAAGAGCAAAAGATCACCTGAGAAGTTATTTGTGCTTCTAGATATGTATGAAATAATGCGGGAACTTCATTCAGAG...............................................................................................................................................................................................................................................................ATTGAATCACTTTTCAGAGGTAAAGCTTGCAATGAAATTAAGGAATCTGCCTTTGGTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698222" ref_strand="+" ref_description="SGN-E698222 [FA05CE09]">
      <seq>tactgtcccaatttgatatttctcgtcaggcggaaattaaaatactgaaagggccacatgaggacctggaaagttatcttcaagcaattgaccagctgagagacaatattcgcttcttcagcaacaacaaaagcttcaagagtagtgatggagtactcaatcatgctaatagtttgctgaccaaggctattttaaagcttgaagaggagtttaagcagctcttgttatcttatagtaaacccattgaacctgatcggctgtttgagtgtctcccaaattcaatgcgaccaccgtcatcacctggacaccaggactctagtggtaagagtcatctgtccaatagtaatgcggagcaagatggtgcaggaaatgctgtcttcacaccgccaactcttatacctccaaggatcctgcctttactacatgatttagcccaacagatggttcaagctggccatcaacaacaatttataaaaatatacagggatacacgttctcccgtactggaagaaagtcttcgcagtttgggagtggaaaaacttaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069O08-iFUhM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0069O08.1" temp_strand="-" temp_description="C04HBa0069O08.1  CU468292.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0069O08 sequenced_by:sanger upload_account_name:uk">
        <position start="12944" stop="8603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12644" g_stop="12616" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12615" i_stop="11159" i_length="1457">
            <donor d_prob="0.504" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11158" g_stop="10953" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="235" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10952" i_stop="10395" i_length="558">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10394" g_stop="10146" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="484" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10145" i_stop="8966" i_length="1180">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8965" g_stop="8903" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="547" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069O08.1" gen_strand="-" ref_id="SGN-E698222" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069O08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12644" e_stop="12616"/>
          <exon e_start="11158" e_stop="10953"/>
          <exon e_start="10394" e_stop="10146"/>
          <exon e_start="8965" e_stop="8903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTCCCAATTTGATATTTCTCGTCAGGTTGCTCTAGCCTCTAATGTTTGTTATGTCGTTAATTTGCTTAGATCTGATAGACACACTCCTTTTAGTTTCCTTAATTGAACATGAGATTAGTAGCAAAGAGTACTTAAATAGCAGAAAAGGAGTTCTGGTGATCTTTGTTAGAGATAAAGACTCCAACCACCTGATGGCTCTTCAAGTGTGACTGCTATTCAAGATAAACCGGAAATCTCCTCCAATATATATGAGATATGTTTCAGATGTATACAAACAGGTGAAATGAGTATAATCTTCCTTGAAAGCCTGACAGCGGTAATATTTGTATAGTACATAGGGATGGCAAGGGGGCGGGACGGTTGTGGGGTGGGGCGGGTTATAGTATTTGTGGGGTTGTGTGAGTTAGAACTTTTGGGAGGTGGATTTAAAATATTTTTGGAAAAAACATGCGGGCCGGGGCGGGTATGCGGGTTGTTTTTAGGCTTCAAATTTGTTGACTACTGGTTTGGGCAGTGAATATCCCAAATGGGAATTTTAGGAGAGAGTTCCTAGTATATGGTTTTGGGGGCAAACATTGTTCTTCCTAGAATCGAATAACACCCAACTACTGTCTCCTTCTCAAAGCGCAGGGGATGTATGCGGTGCTTTGATGGGGTGAGTTTTTTTTCTTATCAATTGTCTTCTCAAAGTGCAGGGGATGTTTTTATGAAAATAAAAGTGGTTTTGTCCCTACTTAATGTTAGAAGCAGAATAATGTTGGAGCTATGAGGGCGGGGAAAAAACAAAAAAATTATGCTATGCGGGCCGGGGCGAAATCCTTGCGGGTTTACCCCACCATCCCCCATTTTCTATTCCTAGTAGTGCATAGTTATACACCTTTTACATGAATGCAGGAGAGTACAGAAAAGCCTAACTTTCAGTATCCATTTCCTTTTTGAATTTCTTCATGGTAATAGTGTTTTGGTTCATTGTGATGTTAGGGAAACCTCCTTTCCCTGCGATCACACCATTTGTAAATTCTTTGGGATGAGAGAGGACAATGATGGCAAATTTTGACAAACACACCTTTACAATGGCATTTGTAGTCCCAGAATCTCAAGGTTCAAGGGGAACAACTCGTGTAAACTTCGTTAGAGGAAGAGGATAATCAATAGGTAGAGACACTAGACCACCCAACAAAGATGTTTTGGTAGCACAAGGGTTTGAAATTTGAATTCTCCCATTGTTAGTTATTTTCATTGCTTGTGCTGATAAATTGTTTTTGAATTTGAATTCGTCGAAGAAGTGACCAGACTTGAATTTGAGTTCGCAGGGAAAGTGAACAAATTCCATTGCAAAATTGTAGTCTTTTTTTTTTTTTTGTCTTTATCAGGTGCAAAGTATCCTTTTTTCTTTGTGATAATTTTATCTCTTAAGTTGGTCTCTCATAAATGCACCTTACTTTAATTAGAACTTCTTAATTAATGGTACCTTCATTTTAGGCGGAAATTAAAATACTGAAAGGGCCACATGAGGACCTGGAAAGTTATCTTCAAGCAATTGACCAGCTGAGAGACAATATTCGCTTCTTCAGCAACAACAAAAGCTTCAAGAGTAGTGATGGAGTACTCAATCATGCTAATAGTTTGCTGACCAAGGCTATTTTAAAGCTTGAAGAGGAGTTTAAGCAGCTCTTGTTATCTTATAGGTTTGCTGACATTTTCACTGTTTTCATCATACTCTTATTGTAGACTTGAAACCTTGTTCTATACTCTATAGTTCATTCTTATCTTGTTTTCCAGATATTCTTCATGTAACTCATTCACGGCAGGACTTCTGTGGAAACCTATTTGTAATTTTATGATTGTTTTGTGATTCAAGTATCAACATTGATTGGAAATTGTAGTTTTCTCCTATCTTTCAGGTAAAAAATGGTGAAGTAAAAGCATCAAATAATCGAATCCTTATAAAATAATAAAAAGCCTGTAAGGAATTTAAAATGGTTATTTCAGTCTCTTTAAGTTAACCTTTATGTGGGTTGTAAATTGTCATCGTGCTCTAGTACTATTTTTGGGATTGAGATTCGAGGCACTTTTTATAAGGAGTGTCCTTGTTCTGCTACTAGTTCTAAAATCCTATGTCTTGCCAATGTTCTTAACCTTCAGTATTCCAATGGAGGCTTCAAAATTGAAGTAATGCATCTATATTCTGCTGTTTGACCTTCCAATGGAGCTATTTGACTAAGTCTGAACTATAACATTTTCAGTAAACCCATTGAACCTGATCGGCTGTTTGAGTGTCTCCCAAATTCAATGCGACCACCGTCATCACCTGGACACCAGGACTCTAGTGGTAAGAGTCATCTGTCCAATAGTAATGCGGAGCAAGATGGTGCAGGAAATGCTGTCTTCACACCGCCAACTCTTATACCTCCAAGGATCCTGCCTTTACTACATGATTTAGCCCAACAGATGGTTCAAGCTGGCCATCAACAACAATTTATAAAAATATACAGGTAATATCTATTTTTATTATGAACTATGTGATCATGTACGGACAATCTTTTACTCATTGTATCCTGGAGAAAAAATTAATCTACTGGCCTAAAAGCTAATGTCTTTCTCTCTATTAAGCAGTTCATGCAGAAAAATAGGTGAAGCTTAACATGAGGTAACTGCCTTACATGTTTTGTCAGTGTCTGGAGTTGAACTCATAAATAGTTGATATAGGTTCTGCTTGTTGCAGAAGTTTAAATGCTCCATACAGTAAATAATAGGTTGTTCATCAATATGATTATTATGGCTTTTATTATTCTTATGCTGGAGTTACAAGAACAAGAGCAGTAAAGATGCTTTTTTATATATGTAGAATACAATACCATGTACATATGTGCATCTTTTCCTTCTCATTCCTATTCGGGATATTTTAGAGCTGTGCACTGTCTTGTCAAAGCCAGATAATCCTGGACATGGCTAGAAACTGCTAAACTCAAGCCTCGAGCTTCAACAGTTTCTCAAGCAAAATGGCCCATTTCATTCTTAGGAATGAAATGAAAACTATTTTCCAGGTTGAAGATTTAATTACTCATTGACATCTATGTACTCTATCGAACTCAACAGAAAGCAAACAAAATAGTGCATACATGAGTGGCGGTGGAGTCTCCAGGAAGCTCACTTTTGGTTTATGATGATGACTGGAATAAAAGGAGAAAAGCTGTCTGAAAACAATTGTGTGTGTGCGGAAAGAGCTCTTGCTCGAAATCTCCAATAGTCTAGTCTAGTTGGTAAATCTGTGTTGTAACGACCTCAAGTTTTATATTACAACTCATTCCACCTTTATCTAGGAGTTCAAAGGTGAAATACTATGATGCCCTTTTCTGGAAAGATGGAAGACCTTCTAGTTGCTTCAACTTTGTTCATATTGAAACCCCCTGGAATAGAAAAGTAGAAGGAAATCAGTAGTTGTGGTTTAAGTACCTTTTCATTCAGTAAACTCTTTTATTTACATATAGAGAGTAGAGAGACCAAGGTGAGGAATGTAAAGCTGTGACTTCTGTGCTCTTATTGTTTAGCATAAGTAGTAGTTTCTTGGTAAATTTTACACGCACATAGCAACAATGTGTTTTGAAGTGCTATAGATTCCTTTACTCATTTCATTCCTTTTCTTATTCTTTTGATTTATAAATGTCTCAATAGGGATACACGTTCTCCCGTACTGGAAGAAAGTCTTCGCAGTTTGGGAGTGGAAAAACTTAGCAA</genome_strand>
        <mrna_strand>TACTGTCCCAATTTGATATTTCTCGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAAATTAAAATACTGAAAGGGCCACATGAGGACCTGGAAAGTTATCTTCAAGCAATTGACCAGCTGAGAGACAATATTCGCTTCTTCAGCAACAACAAAAGCTTCAAGAGTAGTGATGGAGTACTCAATCATGCTAATAGTTTGCTGACCAAGGCTATTTTAAAGCTTGAAGAGGAGTTTAAGCAGCTCTTGTTATCTTATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCCATTGAACCTGATCGGCTGTTTGAGTGTCTCCCAAATTCAATGCGACCACCGTCATCACCTGGACACCAGGACTCTAGTGGTAAGAGTCATCTGTCCAATAGTAATGCGGAGCAAGATGGTGCAGGAAATGCTGTCTTCACACCGCCAACTCTTATACCTCCAAGGATCCTGCCTTTACTACATGATTTAGCCCAACAGATGGTTCAAGCTGGCCATCAACAACAATTTATAAAAATATACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATACACGTTCTCCCGTACTGGAAGAAAGTCTTCGCAGTTTGGGAGTGGAAAAACTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="977" PGL_stop="2883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="977" e_stop="1253"/>
            <exon e_start="1503" e_stop="1632"/>
            <exon e_start="2023" e_stop="2883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.394" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.689" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="977" e_stop="1253" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.394" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1254" i_stop="1502" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1503" e_stop="1632" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.689" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1633" i_stop="2022" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="2023" e_stop="2883" e_length="861"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="977" stop="1253"/>
              <exon start="1503" stop="1632"/>
              <exon start="2023" stop="2473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2023" stop="2715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2023" stop="2713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2023" stop="2508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2121" stop="2883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAGACGATATGTTGCTTGCCGGCGTTGGTCCAAATGAGTACACATATACAACGATTATGCATGGTTATGCATCTCTTGGTGATATTGAAAAAGCTTGTGAATATTTTTCAAAAATTAAAAATGAGGGTTTAGAGCTCGACATATATACATATGAGGCGTTACTCAAGGCATGCTGTAAATCAGGCAGGATGCAAAGTGCTTTGACGGTGACAAAAGAAATGAGTGCCAAAAGCATCCCAAGGAATACCTTTGTTTATAACATATTAATTGATGG : ATGGGCTCGACGAGGTGATGTCTGGGAGGCTGCTGACCTGATGCAACAGATGAGACAAGAAGGGGTTCCACCTGACATCCATACATTCACGTCATTCATAAATGCTTGTTGTAAAGCTGGAGAAATGCAA : AGAGCAATGAAAGCAGTTGAAGAGATGGAAACTGTTGGGATCAAACCTAACTTAAAGACCTATACCACTCTTATACATGGTTGGGCACGGGCTTCTCTTCCCGAGAAGGGTTTGAAATGTTTTGAACAGATGAAGCAGTCTGGTTTGAAACCTGACAAAGCTGTATACCACTGTTTAATGACATCATTGTTGTCAAGGGCGGCAGTTGCTGATCAAGATTACATTATAACGAGAATCCAACATGTTTGTGAAGAGATGGTGGAGTCTGGATTGACTGTTGATATGGGAACTGCAGTTCATTGGTCCAAGTGCTTGAGAAAAATTGAGAGGACTGGTGGTGATATAACAAAATCCCTTCAAAAGACCTTCCCACCTGATTGGAGTTCTCACCGAACTCTTAATGGAACATCAAATGACAACGAGATTGAGGAAGGGTCAGACAGTAGTGACGATGAACGTAGTTCTTTTTATGAGATAAAGAAATGCTAACAATGATTCAGATTTCTACGAAGAGGCATTGGCATAATCTTTATCAGCCCTAGCTGCTGCTTGGTCCCAAGAGTCTTTAGGTGTATAGATGGAATTTTGCCACTAGTTTGGCTTGATCAAGATTGTTTTATTTTTTCGTAAACAACCTCTCTATTTCTACGAGGTAAGGGTAAGGTTTGTGTACACTCTACCCTTCTTGAACCTTGGGATTACGTTGGGTATGTGATTATTTGGCTTGATCAAGATTGTGCAATTGATTCCATATTCTTGAATTGTAAATGTCTCTTTTTGGTTTTAGACTTGAAGTAGCTAAAGGGATTAGTTTTGGATGTACAAATATGTATTAAATTTGTAACTTTTGTCAAATGCACA</gDNA_template>
            <first_frame> F  *  T  I  C  C  L  P  A  L  V  Q  M  S  T  H  I  Q  R  L  C  M  V  M  H  L  L  V  I  L  K  K  L  V  N  I  F  Q  K  L  K  M  R  V  *  S  S  T  Y  I  H  M  R  R  Y  S  R  H  A  V  N  Q  A  G  C  K  V  L  *  R  *  Q  K  K  *  V  P  K  A  S  Q  G  I  P  L  F  I  T  Y  *  L  M   : D  G  L  D  E  V  M  S  G  R  L  L  T  *  C  N  R  *  D  K  K  G  F  H  L  T  S  I  H  S  R  H  S  *  M  L  V  V  K  L  E  K  C  K :   E  Q  *  K  Q  L  K  R  W  K  L  L  G  S  N  L  T  *  R  P  I  P  L  L  Y  M  V  G  H  G  L  L  F  P  R  R  V  *  N  V  L  N  R  *  S  S  L  V  *  N  L  T  K  L  Y  T  T  V  *  *  H  H  C  C  Q  G  R  Q  L  L  I  K  I  T  L  *  R  E  S  N  M  F  V  K  R  W  W  S  L  D  *  L  L  I  W  E  L  Q  F  I  G  P  S  A  *  E  K  L  R  G  L  V  V  I  *  Q  N  P  F  K  R  P  S  H  L  I  G  V  L  T  E  L  L  M  E  H  Q  M  T  T  R  L  R  K  G  Q  T  V  V  T  M  N  V  V  L  F  M  R  *  R  N  A  N  N  D  S  D  F  Y  E  E  A  L  A  *  S  L  S  A  L  A  A  A  W  S  Q  E  S  L  G  V  *  M  E  F  C  H  *  F  G  L  I  K  I  V  L  F  F  R  K  Q  P  L  Y  F  Y  E  V  R  V  R  F  V  Y  T  L  P  F  L  N  L  G  I  T  L  G  M  *  L  F  G  L  I  K  I  V  Q  L  I  P  Y  S  *  I  V  N  V  S  F  W  F  *  T  *  S  S  *  R  D  *  F  W  M  Y  K  Y  V  L  N  L  *  L  L  S  N  A   </first_frame>
            <second_frame>  F  R  R  Y  V  A  C  R  R  W  S  K  *  V  H  I  Y  N  D  Y  A  W  L  C  I  S  W  *  Y  *  K  S  L  *  I  F  F  K  N  *  K  *  G  F  R  A  R  H  I  Y  I  *  G  V  T  Q  G  M  L  *  I  R  Q  D  A  K  C  F  D  G  D  K  R  N  E  C  Q  K  H  P  K  E  Y  L  C  L  *  H  I  N  *  W  :  M  G  S  T  R  *  C  L  G  G  C  *  P  D  A  T  D  E  T  R  R  G  S  T  *  H  P  Y  I  H  V  I  H  K  C  L  L  *  S  W  R  N  A   : K  S  N  E  S  S  *  R  D  G  N  C  W  D  Q  T  *  L  K  D  L  Y  H  S  Y  T  W  L  G  T  G  F  S  S  R  E  G  F  E  M  F  *  T  D  E  A  V  W  F  E  T  *  Q  S  C  I  P  L  F  N  D  I  I  V  V  K  G  G  S  C  *  S  R  L  H  Y  N  E  N  P  T  C  L  *  R  D  G  G  V  W  I  D  C  *  Y  G  N  C  S  S  L  V  Q  V  L  E  K  N  *  E  D  W  W  *  Y  N  K  I  P  S  K  D  L  P  T  *  L  E  F  S  P  N  S  *  W  N  I  K  *  Q  R  D  *  G  R  V  R  Q  *  *  R  *  T  *  F  F  L  *  D  K  E  M  L  T  M  I  Q  I  S  T  K  R  H  W  H  N  L  Y  Q  P  *  L  L  L  G  P  K  S  L  *  V  Y  R  W  N  F  A  T  S  L  A  *  S  R  L  F  Y  F  F  V  N  N  L  S  I  S  T  R  *  G  *  G  L  C  T  L  Y  P  S  *  T  L  G  L  R  W  V  C  D  Y  L  A  *  S  R  L  C  N  *  F  H  I  L  E  L  *  M  S  L  F  G  F  R  L  E  V  A  K  G  I  S  F  G  C  T  N  M  Y  *  I  C  N  F  C  Q  M  H  </second_frame>
            <third_frame>   L  D  D  M  L  L  A  G  V  G  P  N  E  Y  T  Y  T  T  I  M  H  G  Y  A  S  L  G  D  I  E  K  A  C  E  Y  F  S  K  I  K  N  E  G  L  E  L  D  I  Y  T  Y  E  A  L  L  K  A  C  C  K  S  G  R  M  Q  S  A  L  T  V  T  K  E  M  S  A  K  S  I  P  R  N  T  F  V  Y  N  I  L  I  D  G :   W  A  R  R  G  D  V  W  E  A  A  D  L  M  Q  Q  M  R  Q  E  G  V  P  P  D  I  H  T  F  T  S  F  I  N  A  C  C  K  A  G  E  M  Q  :  R  A  M  K  A  V  E  E  M  E  T  V  G  I  K  P  N  L  K  T  Y  T  T  L  I  H  G  W  A  R  A  S  L  P  E  K  G  L  K  C  F  E  Q  M  K  Q  S  G  L  K  P  D  K  A  V  Y  H  C  L  M  T  S  L  L  S  R  A  A  V  A  D  Q  D  Y  I  I  T  R  I  Q  H  V  C  E  E  M  V  E  S  G  L  T  V  D  M  G  T  A  V  H  W  S  K  C  L  R  K  I  E  R  T  G  G  D  I  T  K  S  L  Q  K  T  F  P  P  D  W  S  S  H  R  T  L  N  G  T  S  N  D  N  E  I  E  E  G  S  D  S  S  D  D  E  R  S  S  F  Y  E  I  K  K  C  *  Q  *  F  R  F  L  R  R  G  I  G  I  I  F  I  S  P  S  C  C  L  V  P  R  V  F  R  C  I  D  G  I  L  P  L  V  W  L  D  Q  D  C  F  I  F  S  *  T  T  S  L  F  L  R  G  K  G  K  V  C  V  H  S  T  L  L  E  P  W  D  Y  V  G  Y  V  I  I  W  L  D  Q  D  C  A  I  D  S  I  F  L  N  C  K  C  L  F  L  V  L  D  L  K  *  L  K  G  L  V  L  D  V  Q  I  C  I  K  F  V  T  F  V  K  C  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069O08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="979" stop="1253"/>
                    <exon start="1503" stop="1632"/>
                    <exon start="2023" stop="2511"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDMLLAGVGPNEYTYTTIMHGYASLGDIEKACEYFSKIKNEGLELDIYTYEALLKACCKSGRMQSALTVTKEMSAKSIPRNTFVYNILIDGWARRGDVWEAADLMQQMRQEGVPPDIHTFTSFINACCKAGEMQRAMKAVEEMETVGIKPNLKTYTTLIHGWARASLPEKGLKCFEQMKQSGLKPDKAVYHCLMTSLLSRAAVADQDYIITRIQHVCEEMVESGLTVDMGTAVHWSKCLRKIERTGGDITKSLQKTFPPDWSSHRTLNGTSNDNEIEEGSDSSDDERSSFYEIKKC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2748" PGL_stop="2422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2748" e_stop="2422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="2748" e_stop="2422" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2748" stop="2422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCCAAATAATCACATACCCAACGTAATCCCAAGGTTCAAGAAGGGTAGAGTGTACACAAACCTTACCCTTACCTCGTAGAAATAGAGAGGTTGTTTACGAAAAAATAAAACAATCTTGATCAAGCCAAACTAGTGGCAAAATTCCATCTATACACCTAAAGACTCTTGGGACCAAGCAGCAGCTAGGGCTGATAAAGATTATGCCAATGCCTCTTCGTAGAAATCTGAATCATTGTTAGCATTTCTTTATCTCATAAAAAGAACTACGTTCATCGTCACTACTGTCTGACCCTTCCTCAATCTCGTTGTCATTTGATGTTCCATT</gDNA_template>
            <first_frame> K  P  N  N  H  I  P  N  V  I  P  R  F  K  K  G  R  V  Y  T  N  L  T  L  T  S  *  K  *  R  G  C  L  R  K  N  K  T  I  L  I  K  P  N  *  W  Q  N  S  I  Y  T  P  K  D  S  W  D  Q  A  A  A  R  A  D  K  D  Y  A  N  A  S  S  *  K  S  E  S  L  L  A  F  L  Y  L  I  K  R  T  T  F  I  V  T  T  V  *  P  F  L  N  L  V  V  I  *  C  S  I </first_frame>
            <second_frame>  S  Q  I  I  T  Y  P  T  *  S  Q  G  S  R  R  V  E  C  T  Q  T  L  P  L  P  R  R  N  R  E  V  V  Y  E  K  I  K  Q  S  *  S  S  Q  T  S  G  K  I  P  S  I  H  L  K  T  L  G  T  K  Q  Q  L  G  L  I  K  I  M  P  M  P  L  R  R  N  L  N  H  C  *  H  F  F  I  S  *  K  E  L  R  S  S  S  L  L  S  D  P  S  S  I  S  L  S  F  D  V  P   </second_frame>
            <third_frame>   A  K  *  S  H  T  Q  R  N  P  K  V  Q  E  G  *  S  V  H  K  P  Y  P  Y  L  V  E  I  E  R  L  F  T  K  K  *  N  N  L  D  Q  A  K  L  V  A  K  F  H  L  Y  T  *  R  L  L  G  P  S  S  S  *  G  *  *  R  L  C  Q  C  L  F  V  E  I  *  I  I  V  S  I  S  L  S  H  K  K  N  Y  V  H  R  H  Y  C  L  T  L  P  Q  S  R  C  H  L  M  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0069O08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6479" PGL_stop="4957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6479" e_stop="5988"/>
            <exon e_start="5889" e_stop="5790"/>
            <exon e_start="5307" e_stop="5198"/>
            <exon e_start="5103" e_stop="4957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.519" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.641" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6479" e_stop="5988" e_length="492"/>
          </exon>
          <intron i_serial="1" don_prob="0.519" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5987" i_stop="5890" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5889" e_stop="5790" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.641" acc_prob="0.857">
            <gDNA_intron_boundary i_start="5789" i_stop="5308" i_length="482"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5307" e_stop="5198" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5197" i_stop="5104" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5103" e_stop="4957" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6479" stop="5988"/>
              <exon start="5889" stop="5790"/>
              <exon start="5307" stop="5198"/>
              <exon start="5103" stop="4999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6157" stop="5988"/>
              <exon start="5889" stop="5790"/>
              <exon start="5307" stop="5198"/>
              <exon start="5103" stop="4957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTATACTAATTGGGCAATTACTGTTTACTATCAGGGCAATCGATTCCTATAATTTTTTCTAAGAGAATTGCGGACTTCGTAGGTTTTAGGTCTATATTATGCAAAAGTCCTGGAGACTGAAGGGTATATGGAATGAGGTGATATCAATCAACTAAGCTTCTTCCAAATCAGTTGTAATCAACCAATGGAATCCCCTATATTTTCTTCTTATGGAAAGGAACACCTTGTAGATAGCTGTCAGTCTTTGTTGATACAATTGCCTGACAAATTGCACTTTTTTTTTCCAGCTATCAATCAACATTGAAGCAACTATTTCAAGAATTTGAAAATGGAGGAGATTCGAATTCTCAGCTAGCTGCTGTTACAATGCGTATAATGCAGGCTCTTCAAACCAATTTGGATGGGAAATCTAAGCAGTATAAGGATTCTGCTCTGACTCACTTGTTCCTTATGAACAATATTCACTATATGGTCAGATCTGTCCGCAG : GTCTGAAGCCAAAGACTTATTAGGGGATGACTGGGTGCAAAGACACCGGAGAGTTGTACAGCAACACGCAAATCAATATAAAAGAATTGCTTGGGCGAAG : ATCCTTCAATCTCTATCGATTCAAGGGCTAACATCATCTGGAGGCAGTAGTTCTAGTGGTGTAGATGGACAAAATAGCAGTGGAGTTTCAAGATCCACCGTAAAAGAAAG : GTTCAAGATGTTCAATGCACAGTTTGAGGAGCTTCATCAAAGGCAATCTCAATGGGCTGTTCCAGATACTGAGTTGCGAGAGTCATTGAGGCTTGCGGTTGCTGAAGTTTTGCTGCCTGCATACAGATCTTTCATCAAACGCTTTGG</gDNA_template>
            <first_frame> R  F  I  L  I  G  Q  L  L  F  T  I  R  A  I  D  S  Y  N  F  F  *  E  N  C  G  L  R  R  F  *  V  Y  I  M  Q  K  S  W  R  L  K  G  I  W  N  E  V  I  S  I  N  *  A  S  S  K  S  V  V  I  N  Q  W  N  P  L  Y  F  L  L  M  E  R  N  T  L  *  I  A  V  S  L  C  *  Y  N  C  L  T  N  C  T  F  F  F  Q  L  S  I  N  I  E  A  T  I  S  R  I  *  K  W  R  R  F  E  F  S  A  S  C  C  Y  N  A  Y  N  A  G  S  S  N  Q  F  G  W  E  I  *  A  V  *  G  F  C  S  D  S  L  V  P  Y  E  Q  Y  S  L  Y  G  Q  I  C  P  Q  :  V  *  S  Q  R  L  I  R  G  *  L  G  A  K  T  P  E  S  C  T  A  T  R  K  S  I  *  K  N  C  L  G  E   : D  P  S  I  S  I  D  S  R  A  N  I  I  W  R  Q  *  F  *  W  C  R  W  T  K  *  Q  W  S  F  K  I  H  R  K  R  K  :  V  Q  D  V  Q  C  T  V  *  G  A  S  S  K  A  I  S  M  G  C  S  R  Y  *  V  A  R  V  I  E  A  C  G  C  *  S  F  A  A  C  I  Q  I  F  H  Q  T  L  W </first_frame>
            <second_frame>  D  L  Y  *  L  G  N  Y  C  L  L  S  G  Q  S  I  P  I  I  F  S  K  R  I  A  D  F  V  G  F  R  S  I  L  C  K  S  P  G  D  *  R  V  Y  G  M  R  *  Y  Q  S  T  K  L  L  P  N  Q  L  *  S  T  N  G  I  P  Y  I  F  F  L  W  K  G  T  P  C  R  *  L  S  V  F  V  D  T  I  A  *  Q  I  A  L  F  F  S  S  Y  Q  S  T  L  K  Q  L  F  Q  E  F  E  N  G  G  D  S  N  S  Q  L  A  A  V  T  M  R  I  M  Q  A  L  Q  T  N  L  D  G  K  S  K  Q  Y  K  D  S  A  L  T  H  L  F  L  M  N  N  I  H  Y  M  V  R  S  V  R  R :   S  E  A  K  D  L  L  G  D  D  W  V  Q  R  H  R  R  V  V  Q  Q  H  A  N  Q  Y  K  R  I  A  W  A  K  :  I  L  Q  S  L  S  I  Q  G  L  T  S  S  G  G  S  S  S  S  G  V  D  G  Q  N  S  S  G  V  S  R  S  T  V  K  E  R :   F  K  M  F  N  A  Q  F  E  E  L  H  Q  R  Q  S  Q  W  A  V  P  D  T  E  L  R  E  S  L  R  L  A  V  A  E  V  L  L  P  A  Y  R  S  F  I  K  R  F   </second_frame>
            <third_frame>   I  Y  T  N  W  A  I  T  V  Y  Y  Q  G  N  R  F  L  *  F  F  L  R  E  L  R  T  S  *  V  L  G  L  Y  Y  A  K  V  L  E  T  E  G  Y  M  E  *  G  D  I  N  Q  L  S  F  F  Q  I  S  C  N  Q  P  M  E  S  P  I  F  S  S  Y  G  K  E  H  L  V  D  S  C  Q  S  L  L  I  Q  L  P  D  K  L  H  F  F  F  P  A  I  N  Q  H  *  S  N  Y  F  K  N  L  K  M  E  E  I  R  I  L  S  *  L  L  L  Q  C  V  *  C  R  L  F  K  P  I  W  M  G  N  L  S  S  I  R  I  L  L  *  L  T  C  S  L  *  T  I  F  T  I  W  S  D  L  S  A   : G  L  K  P  K  T  Y  *  G  M  T  G  C  K  D  T  G  E  L  Y  S  N  T  Q  I  N  I  K  E  L  L  G  R  R :   S  F  N  L  Y  R  F  K  G  *  H  H  L  E  A  V  V  L  V  V  *  M  D  K  I  A  V  E  F  Q  D  P  P  *  K  K   : G  S  R  C  S  M  H  S  L  R  S  F  I  K  G  N  L  N  G  L  F  Q  I  L  S  C  E  S  H  *  G  L  R  L  L  K  F  C  C  L  H  T  D  L  S  S  N  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069O08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6211" stop="5988"/>
                    <exon start="5889" stop="5790"/>
                    <exon start="5307" stop="5198"/>
                    <exon start="5103" stop="4959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIALFFSSYQSTLKQLFQEFENGGDSNSQLAAVTMRIMQALQTNLDGKSKQYKDSALTHLFLMNNIHYMVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRIAWAKILQSLSIQGLTSSGGSSSSGVDGQNSSGVSRSTVKERFKMFNAQFEELHQRQSQWAVPDTELRESLRLAVAEVLLPAYRSFIKRF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12644" PGL_stop="8226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12644" e_stop="12616"/>
            <exon e_start="11158" e_stop="10953"/>
            <exon e_start="10394" e_stop="10146"/>
            <exon e_start="8965" e_stop="8827"/>
            <exon e_start="8755" e_stop="8543"/>
            <exon e_start="8287" e_stop="8226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.504" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="0.589" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12644" e_stop="12616" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.504" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12615" i_stop="11159" i_length="1457"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11158" e_stop="10953" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.830" acc_prob="0.589">
            <gDNA_intron_boundary i_start="10952" i_stop="10395" i_length="558"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10394" e_stop="10146" e_length="249"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10145" i_stop="8966" i_length="1180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8965" e_stop="8827" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8826" i_stop="8756" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8755" e_stop="8543" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8542" i_stop="8288" i_length="255"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8287" e_stop="8226" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12644" stop="12616"/>
              <exon start="11158" stop="10953"/>
              <exon start="10394" stop="10146"/>
              <exon start="8965" stop="8903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10342" stop="10146"/>
              <exon start="8965" stop="8827"/>
              <exon start="8755" stop="8543"/>
              <exon start="8287" stop="8226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272910" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTGTCCCAATTTGATATTTCTCGTCAG : GCGGAAATTAAAATACTGAAAGGGCCACATGAGGACCTGGAAAGTTATCTTCAAGCAATTGACCAGCTGAGAGACAATATTCGCTTCTTCAGCAACAACAAAAGCTTCAAGAGTAGTGATGGAGTACTCAATCATGCTAATAGTTTGCTGACCAAGGCTATTTTAAAGCTTGAAGAGGAGTTTAAGCAGCTCTTGTTATCTTATAG : TAAACCCATTGAACCTGATCGGCTGTTTGAGTGTCTCCCAAATTCAATGCGACCACCGTCATCACCTGGACACCAGGACTCTAGTGGTAAGAGTCATCTGTCCAATAGTAATGCGGAGCAAGATGGTGCAGGAAATGCTGTCTTCACACCGCCAACTCTTATACCTCCAAGGATCCTGCCTTTACTACATGATTTAGCCCAACAGATGGTTCAAGCTGGCCATCAACAACAATTTATAAAAATATACAG : GGATACACGTTCTCCCGTACTGGAAGAAAGTCTTCGCAGTTTGGGAGTGGAAAAACTTAGCAAAGATGATGTTCAGAAGATGCAATGGGAAGTTCTGGAAGCTAAAATTGGAAATTGGATTCATTTTATGCGAATTGCT : GTCAAACTGTTATTTGCTGGTGAACGTAAGGTGTGTGATCAAGTTCTTGAAGGATTCGATTCACTCAATGATCAATGTTTTGCTGAAGTTACTACTGCGAGTGTTGCTGTGTTGCTTAGTTTTGGTGATGCCATTGCAAAGAGCAAAAGATCACCTGAGAAGTTATTTGTGCTTCTAGATATGTATGAAATAATGCGGGAACTTCATTCAGAG : ATTGAATCACTTTTCAGAGGTAAAGCTTGCAATGAAATTAAGGAATCTGCCTTTGGTTTGAC</gDNA_template>
            <first_frame> Y  C  P  N  L  I  F  L  V  R :   R  K  L  K  Y  *  K  G  H  M  R  T  W  K  V  I  F  K  Q  L  T  S  *  E  T  I  F  A  S  S  A  T  T  K  A  S  R  V  V  M  E  Y  S  I  M  L  I  V  C  *  P  R  L  F  *  S  L  K  R  S  L  S  S  S  C  Y  L  I   : V  N  P  L  N  L  I  G  C  L  S  V  S  Q  I  Q  C  D  H  R  H  H  L  D  T  R  T  L  V  V  R  V  I  C  P  I  V  M  R  S  K  M  V  Q  E  M  L  S  S  H  R  Q  L  L  Y  L  Q  G  S  C  L  Y  Y  M  I  *  P  N  R  W  F  K  L  A  I  N  N  N  L  *  K  Y  T   : G  I  H  V  L  P  Y  W  K  K  V  F  A  V  W  E  W  K  N  L  A  K  M  M  F  R  R  C  N  G  K  F  W  K  L  K  L  E  I  G  F  I  L  C  E  L  L :   S  N  C  Y  L  L  V  N  V  R  C  V  I  K  F  L  K  D  S  I  H  S  M  I  N  V  L  L  K  L  L  L  R  V  L  L  C  C  L  V  L  V  M  P  L  Q  R  A  K  D  H  L  R  S  Y  L  C  F  *  I  C  M  K  *  C  G  N  F  I  Q  R :   L  N  H  F  S  E  V  K  L  A  M  K  L  R  N  L  P  L  V  *  </first_frame>
            <second_frame>  T  V  P  I  *  Y  F  S  S   : G  G  N  *  N  T  E  R  A  T  *  G  P  G  K  L  S  S  S  N  *  P  A  E  R  Q  Y  S  L  L  Q  Q  Q  Q  K  L  Q  E  *  *  W  S  T  Q  S  C  *  *  F  A  D  Q  G  Y  F  K  A  *  R  G  V  *  A  A  L  V  I  L  *  :  *  T  H  *  T  *  S  A  V  *  V  S  P  K  F  N  A  T  T  V  I  T  W  T  P  G  L  *  W  *  E  S  S  V  Q  *  *  C  G  A  R  W  C  R  K  C  C  L  H  T  A  N  S  Y  T  S  K  D  P  A  F  T  T  *  F  S  P  T  D  G  S  S  W  P  S  T  T  I  Y  K  N  I  Q  :  G  Y  T  F  S  R  T  G  R  K  S  S  Q  F  G  S  G  K  T  *  Q  R  *  C  S  E  D  A  M  G  S  S  G  S  *  N  W  K  L  D  S  F  Y  A  N  C   : C  Q  T  V  I  C  W  *  T  *  G  V  *  S  S  S  *  R  I  R  F  T  Q  *  S  M  F  C  *  S  Y  Y  C  E  C  C  C  V  A  *  F  W  *  C  H  C  K  E  Q  K  I  T  *  E  V  I  C  A  S  R  Y  V  *  N  N  A  G  T  S  F  R   : D  *  I  T  F  Q  R  *  S  L  Q  *  N  *  G  I  C  L  W  F  D </second_frame>
            <third_frame>   L  S  Q  F  D  I  S  R  Q  :  A  E  I  K  I  L  K  G  P  H  E  D  L  E  S  Y  L  Q  A  I  D  Q  L  R  D  N  I  R  F  F  S  N  N  K  S  F  K  S  S  D  G  V  L  N  H  A  N  S  L  L  T  K  A  I  L  K  L  E  E  E  F  K  Q  L  L  L  S  Y  S :   K  P  I  E  P  D  R  L  F  E  C  L  P  N  S  M  R  P  P  S  S  P  G  H  Q  D  S  S  G  K  S  H  L  S  N  S  N  A  E  Q  D  G  A  G  N  A  V  F  T  P  P  T  L  I  P  P  R  I  L  P  L  L  H  D  L  A  Q  Q  M  V  Q  A  G  H  Q  Q  Q  F  I  K  I  Y  R :   D  T  R  S  P  V  L  E  E  S  L  R  S  L  G  V  E  K  L  S  K  D  D  V  Q  K  M  Q  W  E  V  L  E  A  K  I  G  N  W  I  H  F  M  R  I  A  :  V  K  L  L  F  A  G  E  R  K  V  C  D  Q  V  L  E  G  F  D  S  L  N  D  Q  C  F  A  E  V  T  T  A  S  V  A  V  L  L  S  F  G  D  A  I  A  K  S  K  R  S  P  E  K  L  F  V  L  L  D  M  Y  E  I  M  R  E  L  H  S  E  :  I  E  S  L  F  R  G  K  A  C  N  E  I  K  E  S  A  F  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069O08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12642" stop="12616"/>
                    <exon start="11158" stop="10953"/>
                    <exon start="10394" stop="10146"/>
                    <exon start="8965" stop="8827"/>
                    <exon start="8755" stop="8543"/>
                    <exon start="8287" stop="8228"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSQFDISRQAEIKILKGPHEDLESYLQAIDQLRDNIRFFSNNKSFKSSDGVLNHANSLLTKAILKLEEEFKQLLLSYSKPIEPDRLFECLPNSMRPPSSPGHQDSSGKSHLSNSNAEQDGAGNAVFTPPTLIPPRILPLLHDLAQQMVQAGHQQQFIKIYRDTRSPVLEESLRSLGVEKLSKDDVQKMQWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQVLEGFDSLNDQCFAEVTTASVAVLLSFGDAIAKSKRSPEKLFVLLDMYEIMRELHSEIESLFRGKACNEIKESAFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 19808 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 1980 bytes was the average size of a spliced alignment
$ 9376 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2344 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:17:53
-->
