<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:34:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341079" ref_strand="+" ref_description="SGN-U341079        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47825021|gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum] >gi|47825020|gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum] (evalue: 4e-07, score=58.9)">
      <seq>gaaggttgagaaacaaagaagtcgcttcagtcaaggttttgtggaggagtcagtccgtagagggagctacttggaaagcagaagcagccatgaaagacaagtatgcttacctttttcctttcgattccactccagcttgaggttcaggttctcaccatccagatcacgcatagatcgattttccgatctccagttcagcagatttagtggtcagtcctcattctccgaggacaacaatcattagttttatttcagtctttagtcatttagtttcagtttttgctagataaaactggggcttgtcccagtatttctagtctagtttagaggctattttcagacatagttagattcagctgtattaaactcattgttttcaaatatctcagttatagaatatgggtattccccatcttttcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="39100" stop="60925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39400" g_stop="39540" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39541" i_stop="41458" i_length="1918">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41459" g_stop="41736" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="419" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41737" i_stop="43104" i_length="1368">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43105" g_stop="43129" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="444" r_length="25" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U341079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39400" e_stop="39540"/>
          <exon e_start="41459" e_stop="41736"/>
          <exon e_start="43105" e_stop="43129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTTGAGAAACAAAGAAGTCGCTTCAGTCAAGGTTTTGTGGAGGAGTCAGTCCGTAGAGGGAGCTACTTGGAAAGCAGAAGCAGCCATGAAAGACAAGTATGCTTACCTTTTTCCTTTCGATTCCACTCCAGCTTGAGGTAATAGTTCCTCTTCAGTTTTACAGTCATTCATGCGTAAATTCAATTTTTGAATCATGTTCCCTCAATTTGTACTTTCATTTTTAGCGTAATTGCACGTACTCAGAACTCAATTCAGTCAAAACTCAGTTCTCAGTGTTTAGTAGCGGGGTTTGCATCTCTCTCCCTCTATTTCAGCTAGTTTAGTCTTCATTCGAGGACGAATGTTCCCAAGGGGGAGATAATGTAACACCCCGTAGCCAAAACAGCACAAAAATTAGTTTTTTAGAAAAATCTACAGGTGCTACCAACGGTGGCATGAGACGGACCGTAGCCTGAACCACAGTCCGTCCTGCACAACCATCGATGGAATCAGAAACTCTCAAAAATTTCAGCCTAGAAAAGTTGTTTAAGTCTTGGACGACGGATGGACTTACGTTCCGTAGGTCAAACGACGATCCGAAATCCGTAACTGTCGATCAAGACTCCCTTCAACCACTCTCTTACAAGAGCTATGGATGACCAACATGGTTCGTAGGTGGACCTACGGTCCGTATGTGGAAAATTTGCAGCCATTTAAGGGGAAATGTAGTTGGGTCAACTTAAAATGATCATAACTCTTAGTAAAAAATGAATTAGGTCTTCCACAACCAACGCACAGATATATAATTGAATTATCTTTCCATAGCCACCGACCGTTTTAAAATCAGACCTCTGACTAAAAAGTTATGCCCATTTTAGTAAAGGACTGTCGAACAGGCCCTCACGACGGACCCAACGACGGGATGTCGGGCGCACGACGGACCGTCTGTCCTGGCAGTCGTGAGGCCCGACAGCAACCTTCCCAAGGGTCTTTTTGACCTTTTCCACTTCGTTTAAACCCTAAGTTACGTCGTTTTGACCCTAAATTATCAGATTTTAGTCAGTTTAAGCCTAGAAACATAATTAAATCATATCCAAGTCAAATCATTAAATCAAAACATAGAAAAAATAGAAGCAAGAAAGGAAAAAAAAAGCTCAAGAACCCTTGTTCAAGAACGCCACAAGTTCCATCAGTTCCAGCCCCAAAACTTAAGTATTTTTCCGTGGATTTTATCACCAAATATGTGGGATTTCACTAGTGGGTTCCTTTCACCTATTGGTTCCTTAGTTTCAATCAGTTCTTGATTCTTTTATCATGATTAAGCCTAGGGGTTCTAGAACTTTGATATAACTTCATGAATTTATTAAATATATGTTCCAAATTGAATTATCATGTTATTACTCAGATTATCGTATGAATTTCAAAACCCTAGCTTTGTATTTCTTTAGTTCTTGAATTACACATGCTAGGTCATATATTTCAGACACTTCAGATATACATGTCTCAGTTATAACTACATAATTACCAGATTAATTGTTATATTCTCAGTTTGCATGTTCAGTTTTGAGCTATCCAGTATTTACAGAAATAATCAGTTAATTTGCAGAATTCATTGGGAGTAGCATAATACCGAGTTGGACTAGGGTTTAGCGTACCCAATAGTCCCAGAACTACTAGTCGAGTAGGTTGTAAGTCCCCTCTGTGGGCAATCATTTTAGTGATCACGCCAGCATGTCTTTATACCTTTGGTAGGGTATATTGGATCCTCTCGATGGGGCGTACACATCGGACTCCACATTTAGCTCATGTGGTTTTATTATCGGTTATTAGTAGCTCCCACAGTTCAGTCAAACTCTTTGCATTGACCATTTATCAGTATATTCAGTATTCAGTTTCAGCATGTTATAAATTGGTCATTGCATCCAGTTAGCTCAGAAATCAGCACATCACGTTCAGATTATTACACTTGTTTTTGTGCTTGTTCAGTTATGTTTTATTTCAGTTTTACTCTATCCTACATGCTCAGTACCTTTCAAGTACTGACGCATATGTGTGCTACATCTTCTCGTGATGTAGGTTCAGGTTCTCACCATCCAGATCACGCATAGATCGATTTTCCGATCTCCAGTTCAGCAGATTTAGTGGTGAGTCCTCATTCTCCGAGGACAACAATCATTAGTTTTATTTCAGTCTTTAGTCATTTAGTTTCAGTTTTTGCTAGATAAAACTGGGGCTTGTCCCAGTATTTCTAGTCTAGTTTAGAGGCTATTTTCAGACATAGTTAGATTCAGCTGTATTAAACTCATTGTTTTCAAATATCTCAGTTATAGAATATGGGTATTCCCCATCTTTTCATTTTAAGTATGATTTAGCTTCCGCAATAGTTTATTATATTTAGTATGCTCATGATCATGTCAGCAGGGTTAGCTTGGGATCACTTGTGGTCCCTAGGTTATGCGTCCGCGTCTCGAAGGTAGCTCGGGGCGTGACAAATGTAGTGTAGGTTTACACATTTTTGTTATTTTTACTAACACAAAATGTTACCTTAGGTTATAAATATCATGTAAGGTTGTGAGGAAGAGTGTGTCACTAACTAGAGCTTATAATCAAAATGAGCCCATTATTTCAGTTATGTACTCTATTTACCCCTGTTTGTATATAATATGAAATACTTTGTATGACAATGTAAAAGTGTGTATAAACACTATTGAATATGTGTATGTGATGTAGTATGTTATGTTACACTATATTCATAGCATTTCCTATCAAACATAAGTTGTTGAGATGGCTCGATTGGAATATAATGAACCCAATGGCCTAAAATCTCAAAACAAAAACCACGGGAAGCCAAACCTAAACTCTGTCCAACATGGGCATCACAACCTGCCTCAAAGCCATATATAACTTGAGTTATTACTGCCATGAGTTTAATAAGTTGAGAGTGATGATGACTTATACTGAGAAGTGTCCACTTCGGGGCAAGAGGCTATCACTACTATACTAATGTAGGTATAAAAACACGCTAGCTCCCTGGTCCTCGAATGATCAACTTCTAGGAGAAACAGATGTTACCAAATTCTCGATTAAAAGATAAGGTAAAACTAATCTTCTAAAAAATCCCCCCGTCAAATCCTTCTCAATAGGAAACAATGTGGGAGAATCTGGATTGAGAATCATTTGGTGTACCTAAGCCTCAAATCTTATCGTAGCCAGGCTAAAAGAATATGTGGTTGCTCTGAACATCCTCAAAGATCTACCCTTAGCGAAGGATCAAAATCAAGAGTTTGCATAAGTAATATGGGTTGACATCTCATTTGCATCCATCGAATACTTCAAGGTATCCATCTAAGAAAGAGTATTGAAATAATGTTTTAGAGGCTGATCGAAGTAAATGCACACAATAAGCACTTCAAAATGGGATTTCCTACCCTATAGCCTCCCAAATATAGAATATAGAAGTATCTGGTGAACTTTGATTCTGATACCAATTTATCATCACCTAAAATCTCATATCATGATGGCATATATCAATATGGTAAGGTGAACTCATAGTCCAGAACCAAAGTAACGAGATACCACGTAGAAGAGAAGAATATAGAAGATGGATAACAAACATAGAAAGCAAAAAAACAAGAGAGAGAGAAATATACATTTTACAACCCAAGATCTGGTATTAATTAGTAGTCAAGCTACTAATTACATCAAGAGTACAAAGTAAATTAAAAAAATATATATAACAAAAAAAAA</genome_strand>
        <mrna_strand>GAAGGTTGAGAAACAAAGAAGTCGCTTCAGTCAAGGTTTTGTGGAGGAGTCAGTCCGTAGAGGGAGCTACTTGGAAAGCAGAAGCAGCCATGAAAGACAAGTATGCTTACCTTTTTCCTTTCGATTCCACTCCAGCTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTCTCACCATCCAGATCACGCATAGATCGATTTTCCGATCTCCAGTTCAGCAGATTTAGTGGTCAGTCCTCATTCTCCGAGGACAACAATCATTAGTTTTATTTCAGTCTTTAGTCATTTAGTTTCAGTTTTTGCTAGATAAAACTGGGGCTTGTCCCAGTATTTCTAGTCTAGTTTAGAGGCTATTTTCAGACATAGTTAGATTCAGCTGTATTAAACTCATTGTTTTCAAATATCTCAGTTATAGAATATGGGTATTCCCCATCTTTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323051" ref_strand="-" ref_description="SGN-U323051        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:2839147-2840997 FORWARD | Aliases: None(evalue: 2e-79, score=292) genbank/nr: gi|30680844|ref|NP_849617.1| expressed protein [Arabidopsis thaliana] gi|26453256|dbj|BAC43701.1| unknown protein [Arabidopsis thaliana] gi|28372952|gb|AAO39958.1| At1g08850 [Arabidopsis thaliana](evalue: 1e-77, score=292)">
      <seq>gttcaaaggaaaaaaacaagagcaagagaaaccggcgacttaggggtgaaaggtctcctttttttatgggaatatgctgaaactagtttctgaaatgttgtgcgctagaggaggtcagaagttgaggccttatctatgtgcgcaagttagtggttttcatacttcgaagcctgccttagcacctagaagctttttcggggtggaagattttgttgatgatgacaatagtcgtccatatacttaccagaaggagaaaaaatcgaagaacccaaacaagcatgtgtctttcaagcaacggactgtagcttacatggaaccgtttacacttgatgttttcatatcaaagcgctttgtttcagcgtcaatcacccatagagttacatgcaaacaggttgcagtagctggtacaaactccaaagatatcaaggcagttctcaaatcacgaagtgatattcctgcatgcttgtctgtcggacagatcttgtccgacagggcaagagaggctgatgtatacactgcttcttatacacctagagatagggacaaattcgaagggaaaattagagcagttgttcagtcccttattgataatggtatcgacatcaaagtttatcttgactgaaaaaaggtactatgtctacccgttgtatccaagcatattaaatcatcttaaagtaatgaacccttattgcagtctacttagtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="47724" stop="60920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48024" g_stop="48076" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48077" i_stop="48791" i_length="715">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48792" g_stop="48908" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="169" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48909" i_stop="50965" i_length="2057">
            <donor d_prob="0.697" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50966" g_stop="51520" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="724" r_length="555" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U323051" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323051" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48024" e_stop="48076"/>
          <exon e_start="48792" e_stop="48908"/>
          <exon e_start="50966" e_stop="51520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGGAAAAAAAACAAGAGCAAGAGAAACCGGCGACTTAGGGGTGAAAGGTGATAAATGTTCTTCTTTTCTCTGCAGTTTACTCTAACAAAACTTTCTCTGCAGGTGTTATCTTCAATTCTTTTATCATTTTGATGTATCTAAGATAGTCTTAGACTTGACGAAAGACTTAATTGATGAATGTCTGCTTGTTGTTTGACGAAATGCCTCATTGAATACCAACTTCTTCTTTTTTAATTTATAGTAGGTTTTTTCTCTTTAGGTGTGATGAAGAACACTAATAAAATAATGGGTCATGAATTTTCTTGATAGAAATGCGTCCTATTCTTGGAAACCCACTTAAGAGATGTGTTTCTGCTGTAAATATGGCTGGAGAACAATTGGTAGGCTTTAGCTGGGCAGCCAATGAGTATTGGATTGCCCATAAAGATTCTACTAACATTGAAATTGTCATTACTTACTGATAAAAAAAAACGAGTTTGTTTGATAGAAAATTACGAAATAAAAATTTTAAGCTCAAATACTTTAAGCTGTATGAATCCTCTTTATGTATTTTTCTTTGTTCTCACAACCCAACATGTTGATTTGGGTTTGTTTCTTGAAATTTGTGGATGGAAACATACTCTAATCTTTTATAAGTAGGAGGGTGTATTTGGGATGGATGGAGTATTTTCTATTGGTGTGTTGTATTCTGGAACCCAAATTATCTATTTTGTGGGATTGTAGTAGAACTAATGAACTAATACTGTGTCTTATTGATCAAAGGTCTCCTTTTTTTATGGGAATATGCTGAAACTAGTTTCTGAAATGTTGTGCACTAGAGGAGGTCAGAAGTTGAGGCCTTATCTATGTGCGCAAGTTAGTGGTTTTCATACTTCAAAGGTAAAATGGTTTGACTTGATGCTACTAGTTCATGCAGCCTTTCAATTTTCATATGTGTGTGCATACATAACTTTGGCAGGAGTGACTGAATGCTCTTGCTTCTGCCTTGTTGACTTGAATGGTTCTCCAATAGGACATGGCTAGTTATATCTAAGCTCCACTTGTTAATTCTGAGGTTTCTTGTTTGTTTTATCCAGTGGTGTGTTTGTATATCTTTCAAACAAAGACTGTCTTTACGTAAAATAAATGCAGAAGAGTGCTTATTAACTTTCATACAAATGACTCTAGGGTAACATGACTGATGAATGTCTCAAATTACTGGGGATCAGTATGTCTTCTTGTTTCCATACAAAGATTGTTGGAATGAACTCTATTGTTTCAGAACGTCAATTTCATATTGAGATAAAGGCTCAAGTGAGTCAAGAGTTAATTTTTCTCTAGAGAGTCTAGACTCCTAATAAATCTACATTCACGGACATCCAAGTTTGACTGCCAGCCTCATATAACTAGAGCCTTAATAATTGGAATAGTTTTAGAGTTTTAATATTGGAGTTATGTAATGTTTGAGAAATTGTTGGACCATGTAAAAGTGGAGTAATTGTTGTGCAGATCTCACATCAAGTCAAAAGCAGTATGACTGAGCAGTATTTATATCTTCCATTAAGACATGTTTAAATGAAAAACTATTCTAAGTAGTGTCAAGTAACTGGGAAGGTACTCTCTGATCATAGAACCATGTAATTATGAAAGGGTGAAGTTGCAAATGGTAGGTTCTGGAGAATGTAGGTCGTTTCTAAATTGTAAAAAATATTTTGTTATTCTTAGTTGCAATGCATTTTATAATCCGGTGGAATAATCATATCTTGGACATAAAGCATTTTGAAGCAACCATCATTTTGTTGAAATCAACTCTTTATTGTTGGTTACACTTAATTGAGGAATCAGTTGGTTCTCCTTTGTTCTGAGAATGCTTATATATAAAAATGCTTGTATTATTTATAGATGTGATTGCTTAATTGTATATTATGTATATGTGCATTTTTTATGTTAACTGTATGTGATATTGTACAAGGTTGCAGTGAATTGATCTAAAGGCATGATGAATGGATGGATTTGGGCTTTATAGAAACTGGCTTTAATAAGAAGTGCTGACCTTATGTCTCTTTAGTGTCCTGCTGTTATCTTTTCACCTTTGCTTCTGTATAATTAATGAAGCAGAAATGCGCTGCAGCTTCAAGAAAAAGATAGGTTTGGACTGTGTTGAGGGAAGAGATTGTAGAATCGGAGTACAAATCTTTTTTAAGCTTTTAGATTGGATATTTCACAAAACTTAAAACAAAATAAGTTCATTAAAGTTCTGAATCCCTCGTTTATTTTTGGCTCAGTATGAGCTCCGAGCTCGAAGTGATTTCTGTCCTTCAGTTAAAATAAGGAATGAGTCTTTTGTCCGGGAAAAGAATGATAAGGAATGACTTGTGAGAAAGAGAGAGAAGTGAAACACTGTTGACTCCATATAGCACTTGATGTCAGCCCTGCTTACAGGTTTTTATACTCGTGGTTTCATTGCCACGGTTGTGCGTTTGTGCTTATATTAAAAATGTGGTCTTCCTCCTCCTTTGTTTGAATGTATGGGCTTATTTTTATACCAAACACTGTTCCCCTTTGTTTCGTGTATTCTTGAGAAATATGAGGGATGGAGAAGGGAGAAAAGATTAGCACTCAAGTATCACAGTGTGGTGCTTCTGTGTGTTAGCACGCGATGTGTATGTACATTGTAAAGTGATTGCTTTGCTTTTGTCTTTGTAGCACTGCTGTTCTGATAAAATGTTTAATTCATTAGCTAGTGTTAAAAAATATAAAAGTTCCACTTCATCTCTGATATTATGTGGTTCCACACATATGATACTTGCATTTATGTTTTCTAGGCATTGCACTTGACATATGTGTGATGAACAATCAAACTTAATGTGCACTTGGATTTATAGCTTATTATAGAGATGGACCTAAATATTTTTGAAATAGTATCCCCTGAATAAGTTTGTTGCTTCGTTTGGCAGCCTGCCTTAGCACCTAGAAGCTTTTTCGGGGTGGAAGATTTTGTTGATGATGACAATAGTCGTCCATATACTTACCAGAAGGGGAAAAAATCGAAGAACCCAAACAAGCATGTGTCTTTCAAGCAACGGACTGTAGCTTACATGGAACCGTTTACACTTGATGTTTTCATATCAAAGCGCTTTATTTCAGCGTCAATCACCCATAGAGTTACATGCAAACAGGTTGCAGTAGCTGGTACAAACTCCAAAGATATCAAGGCAGTTCTCAAATCACGAAGTGATATTCCTGCATGCTTGTCTGTCGGACAGATCTTGTCCGACAGGGCAAGAGAGGCTGATGTATACACTGCTTCTTATACACCTAGAGATAGGGACAAATTCGAAGGGAAAATTAGAGCAGTTGTTCAGTCCCTTATTGATAATGGTATCGACATCAAAGTTTATCTTGACTGAAAAAAGGTACTATGTCTACCCGTTGTATCCAAGCATATTAAATCATCTTAAAGTAATGAACCCTTATTGCAGTCTACTTAGTATTTCTTATAATCTGAGATT</genome_strand>
        <mrna_strand>GTTCAAAGG-AAAAAAACAAGAGCAAGAGAAACCGGCGACTTAGGGGTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTTTTTTTATGGGAATATGCTGAAACTAGTTTCTGAAATGTTGTGCGCTAGAGGAGGTCAGAAGTTGAGGCCTTATCTATGTGCGCAAGTTAGTGGTTTTCATACTTCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCTTAGCACCTAGAAGCTTTTTCGGGGTGGAAGATTTTGTTGATGATGACAATAGTCGTCCATATACTTACCAGAAGGAGAAAAAATCGAAGAACCCAAACAAGCATGTGTCTTTCAAGCAACGGACTGTAGCTTACATGGAACCGTTTACACTTGATGTTTTCATATCAAAGCGCTTTGTTTCAGCGTCAATCACCCATAGAGTTACATGCAAACAGGTTGCAGTAGCTGGTACAAACTCCAAAGATATCAAGGCAGTTCTCAAATCACGAAGTGATATTCCTGCATGCTTGTCTGTCGGACAGATCTTGTCCGACAGGGCAAGAGAGGCTGATGTATACACTGCTTCTTATACACCTAGAGATAGGGACAAATTCGAAGGGAAAATTAGAGCAGTTGTTCAGTCCCTTATTGATAATGGTATCGACATCAAAGTTTATCTTGACTGAAAAAAGGTACTATGTCTACCCGTTGTATCCAAGCATATTAAATCATCTTAAAGTAATGAACCCTTATTGCAGTCTACTTAGTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323050" ref_strand="+" ref_description="SGN-U323050        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:2839147-2840997 FORWARD | Aliases: None(evalue: 4e-61, score=229) genbank/nr: gi|30680844|ref|NP_849617.1| expressed protein [Arabidopsis thaliana] gi|26453256|dbj|BAC43701.1| unknown protein [Arabidopsis thaliana] gi|28372952|gb|AAO39958.1| At1g08850 [Arabidopsis thaliana](evalue: 2e-59, score=229)">
      <seq>ttttgaggtgaaaggtcagggtatgctgaaactagtttctgaaatgttgtgcgctcgaggaggtcagaagatgaggtcttttctatgtgcgcaaattagtggctttcatacttcaaagcctagtttggcacctagaagctttttcggggtggaagatttcgttgatgatgacaatagccgtccatacacttaccagaaggggaaaaaatctaagaacccaaacaagcatgtttctttcaagcaacggactgtagcatacatggaaccgttcacacttgatgttttcatatcaaagcgctttgtttcagcctcaatcacccatagagttacatgcaaacaggttgccgtagctggtacaaactccaaagatatcaaggcagtgctcaaatcacgaagtgatattcctgcatgcttgtctgtcggacagattttgtccgacagggcaagagaggctgatgtatacactgcttcttatacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="48512" stop="51627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48812" g_stop="48908" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="118" r_length="97" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48909" i_stop="50965" i_length="2057">
            <donor d_prob="0.697" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50966" g_stop="51327" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="480" r_length="362" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U323050" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48812" e_stop="48908"/>
          <exon e_start="50966" e_stop="51327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTGAAACTAGTTTCTGAAATGTTGTGCACTAGAGGAGGTCAGAAGTTGAGGCCTTATCTATGTGCGCAAGTTAGTGGTTTTCATACTTCAAAGGTAAAATGGTTTGACTTGATGCTACTAGTTCATGCAGCCTTTCAATTTTCATATGTGTGTGCATACATAACTTTGGCAGGAGTGACTGAATGCTCTTGCTTCTGCCTTGTTGACTTGAATGGTTCTCCAATAGGACATGGCTAGTTATATCTAAGCTCCACTTGTTAATTCTGAGGTTTCTTGTTTGTTTTATCCAGTGGTGTGTTTGTATATCTTTCAAACAAAGACTGTCTTTACGTAAAATAAATGCAGAAGAGTGCTTATTAACTTTCATACAAATGACTCTAGGGTAACATGACTGATGAATGTCTCAAATTACTGGGGATCAGTATGTCTTCTTGTTTCCATACAAAGATTGTTGGAATGAACTCTATTGTTTCAGAACGTCAATTTCATATTGAGATAAAGGCTCAAGTGAGTCAAGAGTTAATTTTTCTCTAGAGAGTCTAGACTCCTAATAAATCTACATTCACGGACATCCAAGTTTGACTGCCAGCCTCATATAACTAGAGCCTTAATAATTGGAATAGTTTTAGAGTTTTAATATTGGAGTTATGTAATGTTTGAGAAATTGTTGGACCATGTAAAAGTGGAGTAATTGTTGTGCAGATCTCACATCAAGTCAAAAGCAGTATGACTGAGCAGTATTTATATCTTCCATTAAGACATGTTTAAATGAAAAACTATTCTAAGTAGTGTCAAGTAACTGGGAAGGTACTCTCTGATCATAGAACCATGTAATTATGAAAGGGTGAAGTTGCAAATGGTAGGTTCTGGAGAATGTAGGTCGTTTCTAAATTGTAAAAAATATTTTGTTATTCTTAGTTGCAATGCATTTTATAATCCGGTGGAATAATCATATCTTGGACATAAAGCATTTTGAAGCAACCATCATTTTGTTGAAATCAACTCTTTATTGTTGGTTACACTTAATTGAGGAATCAGTTGGTTCTCCTTTGTTCTGAGAATGCTTATATATAAAAATGCTTGTATTATTTATAGATGTGATTGCTTAATTGTATATTATGTATATGTGCATTTTTTATGTTAACTGTATGTGATATTGTACAAGGTTGCAGTGAATTGATCTAAAGGCATGATGAATGGATGGATTTGGGCTTTATAGAAACTGGCTTTAATAAGAAGTGCTGACCTTATGTCTCTTTAGTGTCCTGCTGTTATCTTTTCACCTTTGCTTCTGTATAATTAATGAAGCAGAAATGCGCTGCAGCTTCAAGAAAAAGATAGGTTTGGACTGTGTTGAGGGAAGAGATTGTAGAATCGGAGTACAAATCTTTTTTAAGCTTTTAGATTGGATATTTCACAAAACTTAAAACAAAATAAGTTCATTAAAGTTCTGAATCCCTCGTTTATTTTTGGCTCAGTATGAGCTCCGAGCTCGAAGTGATTTCTGTCCTTCAGTTAAAATAAGGAATGAGTCTTTTGTCCGGGAAAAGAATGATAAGGAATGACTTGTGAGAAAGAGAGAGAAGTGAAACACTGTTGACTCCATATAGCACTTGATGTCAGCCCTGCTTACAGGTTTTTATACTCGTGGTTTCATTGCCACGGTTGTGCGTTTGTGCTTATATTAAAAATGTGGTCTTCCTCCTCCTTTGTTTGAATGTATGGGCTTATTTTTATACCAAACACTGTTCCCCTTTGTTTCGTGTATTCTTGAGAAATATGAGGGATGGAGAAGGGAGAAAAGATTAGCACTCAAGTATCACAGTGTGGTGCTTCTGTGTGTTAGCACGCGATGTGTATGTACATTGTAAAGTGATTGCTTTGCTTTTGTCTTTGTAGCACTGCTGTTCTGATAAAATGTTTAATTCATTAGCTAGTGTTAAAAAATATAAAAGTTCCACTTCATCTCTGATATTATGTGGTTCCACACATATGATACTTGCATTTATGTTTTCTAGGCATTGCACTTGACATATGTGTGATGAACAATCAAACTTAATGTGCACTTGGATTTATAGCTTATTATAGAGATGGACCTAAATATTTTTGAAATAGTATCCCCTGAATAAGTTTGTTGCTTCGTTTGGCAGCCTGCCTTAGCACCTAGAAGCTTTTTCGGGGTGGAAGATTTTGTTGATGATGACAATAGTCGTCCATATACTTACCAGAAGGGGAAAAAATCGAAGAACCCAAACAAGCATGTGTCTTTCAAGCAACGGACTGTAGCTTACATGGAACCGTTTACACTTGATGTTTTCATATCAAAGCGCTTTATTTCAGCGTCAATCACCCATAGAGTTACATGCAAACAGGTTGCAGTAGCTGGTACAAACTCCAAAGATATCAAGGCAGTTCTCAAATCACGAAGTGATATTCCTGCATGCTTGTCTGTCGGACAGATCTTGTCCGACAGGGCAAGAGAGGCTGATGTATACACTGCTTCTTATACACC</genome_strand>
        <mrna_strand>TATGCTGAAACTAGTTTCTGAAATGTTGTGCGCTCGAGGAGGTCAGAAGATGAGGTCTTTTCTATGTGCGCAAATTAGTGGCTTTCATACTTCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGTTTGGCACCTAGAAGCTTTTTCGGGGTGGAAGATTTCGTTGATGATGACAATAGCCGTCCATACACTTACCAGAAGGGGAAAAAATCTAAGAACCCAAACAAGCATGTTTCTTTCAAGCAACGGACTGTAGCATACATGGAACCGTTCACACTTGATGTTTTCATATCAAAGCGCTTTGTTTCAGCCTCAATCACCCATAGAGTTACATGCAAACAGGTTGCCGTAGCTGGTACAAACTCCAAAGATATCAAGGCAGTGCTCAAATCACGAAGTGATATTCCTGCATGCTTGTCTGTCGGACAGATTTTGTCCGACAGGGCAAGAGAGGCTGATGTATACACTGCTTCTTATACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322087" ref_strand="+" ref_description="SGN-U322087        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | cytidine/deoxycytidylate deaminase family protein, similar to riboflavin-specific deaminase (Actinobacillus pleuropneumoniae) GI:1173516; contains Pfam profile PF00383: Cytidine and deoxycytidylate deaminase zinc-binding region | chr3:17473079-17475640 FORWARD | Aliases: T21L8.140(evalue: 0, score=764) genbank/nr: putative(evalue: 0, score=788)">
      <seq>cgcatttgctaggaggattagctacaccttttctctgcaaacccatttctgcttcttcttcttccaattacagttacacatccgcttcatcttttgattctctctacatcaaacgagcagccgaattagctgacaaatcggccggatttaccgctcctcatcccaacttcggctgcgttatcgctgttccaaatggtagagctacggtggtcggagaaggttacttgtacgccgaagggactattccggcggaagtgcaggctgtagaagccgctggcgagcagtgtagaggtgccactgcttatcttaatatggaacctggagactgtcactgtgatactagtgccgtttccgccctaatcaaggcagggattagtagagttgttgttgggatacggcatccgctgcaacaccttcgtggcaatgccattcacgcattgaggagtgaaggtcttcaagttgatgtgcttggggaagatacacagagtaagactattgaggatgctatcaaatcctgccttcttgtcaatgctcctttactatatagagctgcctgtcaagtcccattctctgttctcaagtatgcaatgacacttgatgggaaaattgctgctagttctggtcatgcttcatggatcagtagcaaaaagtcaagaactcgagtttttgaaatgcggggtagaagtgatgctgttattgttggaggaaatactgtgcgcaaagacaatccacgtttgacggttagacatggaggtgaccatctgccccggcgtgttgtattatctcaaactcttgaccttccagaagaagcacatctttggaatgtttctgaggtccccactatagttgctacacaaagaggtgcaaagagaagtttccagagattgcttgcatccaaaggcgttgaagtggtggaatttgatattttagatcctagagatgttatggggtacttatatgatcgtggttatctctctgttttgtgggagtgtggagggacacttgctgcatctgctatttcttctggggtcatacacaaagtacatgcatttgtcgctcccaaaattataggtgggaaaaatgcaccgtctccagttggggaacttggaatggtagagatgacccaggctctggaactaattgatgtttgctatgagcagattggacccgacatacttgttagtgggtttctgcaaccagttcctgacttgacacctactattccatcagtacaagaaacttcagccattgatcctaccatttctccttatgaatcaagcatcattttcttttacaagacatgggatccatatggtgccttctcaaatttttcactccatccaattcagatgcctgatgaaaatgaagaacttgtcacctggtccagtgtagagcattattaccaggcacaaaagtttgttggggtatctgatcctgtagctaaaagctgtattgaagaattaaaatgtgcaaagagccccgaggaagcagcacggattggaaggagaatacagaggcagcaacctaatctggtaagaccagactgggaatctatcaagattgacgtcatgtacaaggccttacaatgcaagttcactacatacccctatttaaactctttgttgctctcaacggcgggatctgttcttgtggagggttcaccacatgatctattctggggaggaggtcgagacggagaaggccttaactatcttggacgattgctaatgaagttgagatctgagctcttaggtgagtcttcaaccagtcaaaaatctttgcttcctcaaacttcagaaaataattagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="60595" stop="70384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60895" g_stop="61259" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61260" i_stop="61696" i_length="437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61697" g_stop="61831" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="500" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61832" i_stop="64466" i_length="2635">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64467" g_stop="64566" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="600" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64567" i_stop="64673" i_length="107">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64674" g_stop="64799" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="726" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64800" i_stop="64951" i_length="152">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64952" g_stop="65265" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="1040" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65266" i_stop="65867" i_length="602">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65868" g_stop="65987" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1160" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65988" i_stop="67913" i_length="1926">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67914" g_stop="68159" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1406" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68160" i_stop="68243" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.501" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68244" g_stop="68369" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1407" r_stop="1532" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68370" i_stop="69806" i_length="1437">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69807" g_stop="70084" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1533" r_stop="1810" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U322087" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60895" e_stop="61259"/>
          <exon e_start="61697" e_stop="61831"/>
          <exon e_start="64467" e_stop="64566"/>
          <exon e_start="64674" e_stop="64799"/>
          <exon e_start="64952" e_stop="65265"/>
          <exon e_start="65868" e_stop="65987"/>
          <exon e_start="67914" e_stop="68159"/>
          <exon e_start="68244" e_stop="68369"/>
          <exon e_start="69807" e_stop="70084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTGCTAGGAGGATTAGCTACACCTTTTCTCTGCAAACCCATTTCTGCTTCTTCTTCTTCCAATTACAGTTACACATCCGCTTCATCTTTTGATTCTCTCTACATCAAACGAGCAGCCGAATTAGCTGACAAATCGGCCGGATTTACCGCTCCTCATCCCAACTTCGGCTGCGTTATCGCTGTTCCAAATGGTAGAGCTACGGTGGTCGGAGAAGGTTACTTGTACGCCGAAGGGACTATTCCGGCGGAAGTGCAGGCTGTAGAAGCCGCTGGCGAGCAGTGTAGAGGTGCCACTGCTTATCTTAATATGGAACCTGGAGACTGTCACTGTGATACTAGTGCCGTTTCCGCCCTAATCAAGGTATATTTCTTATTCAATTTCAACAAAACAAGTTTGTCTATTTACTCTATACCATGAAAAATTGGATTGGTAAAGTAGAGATCTTTTTGTTTATTTGTTTGTGAGAATTGAGAAAAGGCACTCAAAGATACCAGCATATACTACTAAGTGTACAAAATATATTTTAGATTTCAGGCATAAAGACATTTACTAGTTTATTTTGCTGTATTTTACTGCAGAAGATCCCAATTGCACATCTCTTATTTAAAGAAACATATATGTTTTAAGAAGCATGGTACTGTAATGCATTCTTGTTGGGAGGAAAAGTTCCTGTAACACTTAAAAGATTCATCTGTTTCACTGCCTTATTAGACAGGAAAACTGATTGAAAAAGTTGATAATATGTGTACTTTATTGCTAAAGTTTAGCGGGAAATGCAATTGATGCATCTTTGTTAGGCAGGGATTAGTAGAGTTGTTGTTGGGATACGGCATCCGCTGCAACACCTTCGTGGCAATGCCATTCACGCATTGAGGAGTGAAGGTCTTCAAGTTGATGTGCTTGGGGAAGATACACAGAGTAAGACTATTGAGGTAATCTAATATGTAGTGCATCCTGGGTAATTCACTTGATGGGCTTCGGCGTAGCAAATTAACTATTGTAAGATCTCAATTCTTAGTTCTGGAGCAATATAACATTCTCCACCAAAAGAATTAAAACATAGCGTTAACTGCACTTTTGATTTTCTTCATCATACGTGTCCTTGTTTTTGCCCTGCAGTTATGGTGAATATCTATCTACTTCCCATATTTGATAAAATTAGAAGTCTCAATAACGACCAGAAATAAAAGGGTATCACATTGATGGTATGGTGCTAAATGTTTGTACGAAAAGAATATACTCATTTTGCTACCTTTAGAAGAAATCTTTAGCTAAATAGCTTTTATGGTTCCCTGGAATTTAAAATATTCTATAAAAGGTGCATGTTATCATCTTTGAAAGGAATTATACTATTGATGCATGTTTATATCTAATTATTAGCATTTATATTAAATCACCACAAATTATATGCTAATTTCAACTTGTCTGATTCAGACTCCTTGCTAGATACCAAGAATTTTCACTAGCAAAAATTGCAAAGAAATTTATGGTATTTAAATAAGTGCCTGACACTTAATTCAAGTACAGGATTTTCGTTGCTGCGTCACATATGTCACACCAGAAAATCGAGCTTATTGCCTCAGTTTTCATCCCTCCATGTTTATCCATTCTTTAGTCCTGGAAATATCAGTGTCAAAGGTTTGGAATGCAAGAATTTGTTAATTGAAGCAGTATTTTGTACATCCTAGCAATTTTTAAGTGTCAAATATTTTCTTTATCTTTTATATTTTTTGGGATCAAGTAAGGGTACATTTTATTTACAAAAGTACCAGGTACAAAGGTCTGAATGTTGCTTCTTTGACAAATTAAGGAGTCCTTGAAGTTCAACTTGGTATTAACATCCTTTACAAAATCTATCTTACACCAAAAAGCCCAAGACTGTAAAAACATCTCTATTTATTGTTGGGGACAGTTTCCTCTTTGTCTTCGAAACATCTGGAATTGAGCATTTTCCAGACTGCCCAAAAAATGCAAGCAGGAAGGTTTTCTTATATTCTTTGATCCTCTTATTGATTGTTTTACCTTGCCAGTAAAAGCATCTCCTTTACTGTTCTTGACATGGCTCCCTGTACTCCTAGAGGGATCCACAAAAAATACTCCAAGTGGGACAGCTGAAAGTGCAATGTAGTTACACATGGTATGGGGATTCATTTTTAGCTCTCACTGAGGAAGCACCTTCTGCATATGTTAGTTCCTCTTCTTTGCCGATTGTCCTTGGCTAGACAAGTCCATTTATAGCTACTACAGTAAGCAAGTTTCTCTGGGTCCTTTGTGTGTCCGTTTTGCTAATCTTGGCCAACTTTCCTCTTCTGTGCTCTGGCTGTCTAGCTGATCTGACTTTGAATTATCTTTCCTTCTCCTTAGTCCATAATAGTGCATTTTGGGATTTGAGGGTACTCTCTAGAAATTGCCGATTCAGCTAGAAACTTGACAGATAGTCAACCTCCCAATCCAAGAACTTCTTCTAAATGACTAAATCTGATACTCCCTGTTGTTCCTTCTCTCAATTCTGCAAACTGCCTCTTTATTGGCTGCTCTGGCATGTAGCTTGGGTATGCTAACTTTAAAGCTTCTGTTCAAGCTGCACATCTTCCGTAAATTTGTTTTCTTTCTCTCCCAATTTTAAGGTTTATGAGGTCAAAGAATTCATTCCACATATTTCTGATGTATTTCCGTACTGAAGTATTCACTGATTAATATAATCAATTCAATTAAAAGACTTGTAAATTTTTGGAATTCAAGCAAACCTAACTAAAGTTAGGGGACAATGAAAGGAACAATCTATATAACAATACCAATTAGCAGGTAATATGTCTTATTTATGTTAGTAACATTCACTTTTGAGTCCTATGCTTTCCGGCAGTTCTTTTAGCTCTATGTGAGGTTTGTATATCATTATAAAATGTAGAGACTCTATAGTACTTTTTATTTTTGTTTGTATTTTGTATAATGTTGGCCTGAGAATAATTCAAATGGAGAAACATGGTCAGTGATGATTCATATAGTTATTTCCTACTCATTTCTGATGAAGGTGGAGTAGTTGTTTGTATCAATGGTAGTCCAGAGTGGTTCTTTGCATCCTCTAGAGGTTTGATCCCAACTTGATTTTGTGTGTCAATTGTCCTGCTTGCCCTTCTTAAGAATATATTTCAGAAGAAACACACTAGAAAAATATCAAAGCTGTTGATATAAACTACTTGACATAAATTACTAATGGGTCTAGCATAATATTATAGTACATTCTCAAAAGATTATGTGCTTTTTATGCATCACTGTAAATTGCTTAAAGCTTAATTTTTTATTCTCGAGACACTTCAAGATACATTACCTGTTTAGTGTTTGCATTGCTTAGATTAGTTTTAGATTTTCATTGAAATAAATGAGGATTTTTTTCTGCAAAACTTAGAGCAGAAGAAGAAAGAGAAATCCTGTAACTACTGTTAATGCGTTTACTATTACTTTGATAACTCAATCTGTTTCATGGGAAGAGTTCGCATTGTAGAGCTAATTCTTACGTTCTACAATTTCTGCTGTGTAGAGCTAACACTTACAATTTGTAATTTTCAGGATGCTATCAAATCCTGCCTTCTTGTCAATGCTCCTTTACTATATAGAGCTGCCTGTCAAGTCCCATTCTCTGTTCTCAAGTATGCAATGACACTTGATGGTGAGTGCATATAGCCTATGATGTTGCAACAACATTGCTATGGTAACAAATCACAAGCTTCATTAATAAATTTGACAATGAGCTGCGGCCATATTTTGTGTACACAGGGAAAATTGCTGCTAGTTCTGGTCATGCTTCATGGATCAGTAGCAAAAAGTCAAGAACTCGAGTTTTTGAAATGCGGGGTAGAAGTGATGCTGTTATTGTTGGAGGAAATACTGTGCGCAAAGACAGTATGAATCTTCTCATTCCTCCATAAACATCCTGAATGCTAAGAATATCCAGTCAACTTTATTAGAGATACTCAAAATGGCTTTATGCTTTTTGACTTGGATGAGATATCTCAGATATTTTACTGCTGCTTTACTTTTGATTTTGGTTCTAGATCCACGTTTGACGGTTAGACATGGAGGTGACCATCTGCCCCGGCGTGTTGTATTATCTCAAACTCTTGACCTTCCAGAAGAAGCACATCTTTGGAATGTTTCTGAGGTCCCCACTATAGTTGCTACACAAAGAGGTGCAAAGAGAAGTTTCCAGAGATTGCTTGCATCCAAAGGCGTTGAAGTGGTGGAATTTGATATTTTAGATCCTAGAGATGTTATGGGGTACTTATATGATCGTGGTTATCTCTCTGTTTTGTGGGAGTGTGGAGGGACACTTGCTGCATCTGCTATTTCTTCTGGGGTCATACACAAAGTATACCCTCATAATCTTTTCTTGCTATTTATTTTGGATCTCCTGCTGAGCTGTTATTACTTTTCAGGAGGATATGTTTTATTCTCTTAAATTTCTGAAATGGGAAGTATACAACTGAAAGTTTTAACTTTGATTTTCTATTTTAACCTATTAAGAAGTTTTTGTTCTTTACAAGTTCACCAGTGAATGACAGTAGCTGCCTGATTCAGCAACTTTTTACTTCAGAAAAATCCAAATGGAGGATAGATACTGTCTAATTCTTCTGTTTTTAAACTAAATATGGACATCAGTCTGGCTTGTCGAGTGCACATACTCATTTTGAAAAACTCTGTTATTTCTGGTACTGTCAAGATTTTCATCAATGCTCAGAGAATAGTATATCAAACACCCAGAAGTTCATGTTTCTTCCTTCCTTTGCTTACATATCACTCTTTAGTCTTTATGGTGTTCTTCATCTTATTGACAATTCAGCTGTCCTATTTTTTGGCAGCTCTTCTAGTTTACTGTGTAATTAAACAAATTTTTGTCTGCTCTACTAGTTTGCATATGGAGAGAAATTTTTGTTTTTGTATTGCAGTTATATATGTCAAACCTTACTGCAGGTACATGCATTTGTCGCTCCCAAAATTATAGGTGGGAAAAATGCACCGTCTCCAGTTGGGGAACTTGGAATGGTAGAGATGACCCAGGCTCTGGAACTAATTGATGTTTGCTATGAGCAGGTTTGATAGGCTTCTCCTTTAAATTTTCTGATTATGTGCTTAGTACATGCATGTCTTGCTGTTACTTATCCTCAACCATCCCCCTTCACTCCAACAAAACAAAAGAGGGAAAGAGAAATGCATGTAGCGCTGTCTGGTCTAGCTTAATCCTTAATTATGTACTGTGTGTACATGTTATAAACTGTGCATTTTTCTCTTTTTGGCCTTACCCAGATTTCTGGTGTTTTCTTATTTGAGTGTAGTTCGTTGTCTTAAGTCCTGGAATCCTTTCTGATAAATCCACTTTAGTATCAGAAACCCTTGGTTTTTCTCAATGTTTGTTAAATTCCCTTTTATAGATGCTAATTACACTTAGTCGTTGAATGTTGTTGAATATCTTGCTAATCATGTCTAAGCCGCATGCTGTAATAGTTTTCCTTACTTTCTCTTCCTGAAACCCTATTGCTGGGTTGTAAGTAGCTTATTTACAATGGAAAGAATAAAAAAGTCTGCTGATATGCAGAATAACCTCCTCGCCAAGCTGTATGCAGTTGCTTTTTTTTTTTTTTTAGGCTAGCAACATGTATATATTTATATATAAATTTAAAAAGTAGCACCATAACAGTGCTATCAGTAATTACAATAACCACCCAAACTTGTGTGTAGAAGTGAAACACAAAAAGCGGTTTTTCACCTTTCCTAAGAAGATGAGTCACTCCTATAGTCCTTTTAGGTTTCTGAGTTCTAGCAAACAAAGAAATTTGTATAAGTTTTCATGTTGATGGAAGACTCTGCATGCGGGAGCTTGACAAAGCAGAACGATATCAAACTCAAATAAAGCAGAAGGCTGGAGTAGGTTAATGGCTAGTCTGACGTAGTCTAAGGTTTAATGAATCCTTTGAACTGAATAGGCACAATGTACTCAAAGGATTCATGTAGCCAACCTTAACTAATTTGTGATTGAGGCATAGAAGATTATTTATGTCAAATTCTTACCTTGAAGGGAACTTTAGCTTTCAAAATGGAAGAAGCTAAAGAAAAAGTAGTCAGAATTTCTGCATTCCTTAAAAGGATAAATAGGAATTGCAGGACAAATTACTTATTCCCGTGTTGCTTCTATCTCTTTCAAGTAAATACAATAAAAATTGCTTGAGTGAGAAGTCAGTTAGATTCCTCATTCAGTATCCATGTGCCCAATGCTTGCATTCCAATTACACTATCTTTCTTTCTCTGTTTTCCCTTCATATGATATTGCTCACATTCATCTCTTGTTAGTGCATATGCTCAAGTTAAAGGATTTTGTTTAGGTGTTTCCAGGCGTAAACTTCCGCAATCTATCTGTCATTCCAAATCCCTAAACTCTTTTTAGTTACTGTTGGTCTGCTAATAAGTCTGTTTAATGAGGGTCACACATTGCAGATGTAGGAACTGGGTCGGAAAAGCAGGTATTACTTCCTTGGGCTAGCCTTAACTAAGTACATTGTACTTTCGAACAATGTTTAGCATCCTGTATCACAATGGTAATCTGTCAAGGCTGGTAAAAAACAAAGGTCTCTATGCCATTAATATCTCATTACTGATGTACCGAAATGCTGAAATAATTTTTTACCTTATAGCAATAAGATGGTCCAACACCACATGACAATTTTTTGTTCATCTTTGTGTTTCTTTTACTTAGTAGAATTGTAAAGTATGCAATAATTGCTAAAAATTGTATTGCCTTTCAATTGCTCTATTATGAAGGATCCTCAACGGCATTCTCTGATATCATTTCTTTGGTGAAGCGGTAGGTAGGGGTTAGCTACTAACCACCTTCAAGAAATGAAACAAGATAAACTGAAACCTTGTTGTCCCTTTGGACTGTTTCCCCCTCTTCTGACTTACCTTTTAATGATGGCTAGTTTTTCTGAGTTAATTTTTGAACTCTGAAGTCATATGGATATGCAGATTGGACCCGACATACTTGTTAGTGGGTTTCTGCAACCAGTTCCTGACTTGACACCTACTATTCCATCAGTACAAGAAACTTCAGCCATTGATCCTACCATTTCTCCTTATGAATCAAGCATCATTTTCTTTTACAAGACATGGGATCCATATGGTGCCTTCTCAAATTTTTCACTCCATCCAATTCAGATGCCTGATGAAAATGAAGAACTTGTCACCTGGTCCAGTGTAGAGCATTATTACCAGGTTATTTCCTTGAAAAACTTGAAAATAGAACTTCGTTATTTGCAGCATCTTTCAGGCATTTGACAAATAATTCTTTGATTCAAGGCACAAAAGTTTGTTGGGGTATCTGATCCTGTAGCTAAAAGCTGTATTGAAGAATTAAAATGTGCAAAGAGCCCCGAGGAAGCAGCACGGATTGGAAGGAGAATACAGAGGCAGCAACCTAATCTGGTAATTCTTTACATTCTTTTTACAACATTATCCCTTTGCTTCTCCATGAACTATCATTTTTTTCGTGGTTCCTTCTTTGCAAGGCTGTTTTATTCATGTGTTCAGAAAGCATAAGCATGCCCCTTAACTAGATAGCAGAATATGATCAATTGTATTGTAAATGCTTGATCATAAATGGGTAAGGTCAGAAGCTATCTACTCCATATCAAACGGTATCTCCTAAGTGGCTTAGCACATGCAGGTGGATTCAGGATTTGAAGTTCATGAGTTCTTATAACAATCTCACATTAATATCCAATAGTAACTGGTTCACAGTCAAATATTATAGATATTTTAGTAGATTACTTAATACATATATAAGGTTTGGACAAAAGCTAATGGATTCACGTGAGCTTGTAGACGACACTCTAGATCCTTCCTCTGTAGTTTATTAAGCCAAAATAAATAAATTAAAACCCAACAGGCAGTTCCTTTTTTTTTTTTTGGTGGTGGTGGGGGTGGGGGGTAATTATGAAGTAAAACTAGTTTTATTTAAACAACACAATCAACAAATGAAAAAATAGTAGTTTTGAAATGGTTGCTGGCAACCAGCAGATCCCCAGTAATACTGAAGGGGTGTTAATTATCAAACATATGTAGTTGTCTTAAAAAACAATTGACAATTTATTATGTATCAAACTTTAGGATTTCATTGGTTCATAAAAGTAAACATGAAACTAATCAAAGATATTGAGAAGAAAGATATGTTGATAAAAAGAATTTAATGAGCCATGGTGGATTGAGTTACCTAGTTCTCGTTGCTGGTGAGAAGTGACAAGTATCCGGTGTGATTAGTCGAGGTGCGCGCAGACCTGGCCACCACAGTTATCAAAAGAGAGATTAGTTTTTGATGAATTCATTTCGCAACCTCAAACTCAGTAAAAAGTTAGTATTTTGATTTACCTGTTCCTGAAAATATAGTTGGTCTGGACATCGTAGAGAATTGAGTCTATGCACAATGCCAGGGTCTAGGGCGAGGTAAGTTTGATTCCAGAAAGTGTGCTTTAAAGAAATAGTTAAGTTGAAATGTTGGTAGCAGTATTAAGCGGAGGAGACTTCGGAAGTATTGCCTGTTGCAACAAAGAGTTATAGTTCTGTAGCAAACATTACCTTAGGATGCTACACTCATAATTTTTCTTAAAAGAGTTTTGTTTCTAAATCCTTGCCAATTCCAGCAACTTTACGAAATTGGGCCATGGATGATCCATCTTAATCCAACCCTCTGATGCAAGCAAGAAATACATGGTCTTTACAATTTAGGCTATATTGGTTCTGCACCGCACTCCCTTTTGCCTGCTCGCAAATGGACCTTTTTATCCCTTTATTAATGGTCCGTAGTGTATAATGCAGTTAACGCCTAACTTCTGTTCATTTCCCTCTTCTTTCTGTGTGTTCCAGGTAAGACCAGACTGGGAATCTATCAAGATTGACGTCATGTACAAGGCCTTACATTGCAAGTTCACTACATACCCCTATTTAAACTCTTTGTTGCTCTCAACGGCGGGATCTGTTCTTGTGGAGGGTTCACCACATGATCTATTCTGGGGAGGAGGTCGAGACGGAGAAGGCCTTAACTATCTTGGACGATTGCTAATGAAGTTGAGATCTGAGCTCTTAGGTGAGTCTTCAACCAGTCAAAAATCTTTGCTTCCTCAAACTTCAGAAAATAATTAGTA</genome_strand>
        <mrna_strand>CGCATTTGCTAGGAGGATTAGCTACACCTTTTCTCTGCAAACCCATTTCTGCTTCTTCTTCTTCCAATTACAGTTACACATCCGCTTCATCTTTTGATTCTCTCTACATCAAACGAGCAGCCGAATTAGCTGACAAATCGGCCGGATTTACCGCTCCTCATCCCAACTTCGGCTGCGTTATCGCTGTTCCAAATGGTAGAGCTACGGTGGTCGGAGAAGGTTACTTGTACGCCGAAGGGACTATTCCGGCGGAAGTGCAGGCTGTAGAAGCCGCTGGCGAGCAGTGTAGAGGTGCCACTGCTTATCTTAATATGGAACCTGGAGACTGTCACTGTGATACTAGTGCCGTTTCCGCCCTAATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGATTAGTAGAGTTGTTGTTGGGATACGGCATCCGCTGCAACACCTTCGTGGCAATGCCATTCACGCATTGAGGAGTGAAGGTCTTCAAGTTGATGTGCTTGGGGAAGATACACAGAGTAAGACTATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTATCAAATCCTGCCTTCTTGTCAATGCTCCTTTACTATATAGAGCTGCCTGTCAAGTCCCATTCTCTGTTCTCAAGTATGCAATGACACTTGATG...........................................................................................................GGAAAATTGCTGCTAGTTCTGGTCATGCTTCATGGATCAGTAGCAAAAAGTCAAGAACTCGAGTTTTTGAAATGCGGGGTAGAAGTGATGCTGTTATTGTTGGAGGAAATACTGTGCGCAAAGACA........................................................................................................................................................ATCCACGTTTGACGGTTAGACATGGAGGTGACCATCTGCCCCGGCGTGTTGTATTATCTCAAACTCTTGACCTTCCAGAAGAAGCACATCTTTGGAATGTTTCTGAGGTCCCCACTATAGTTGCTACACAAAGAGGTGCAAAGAGAAGTTTCCAGAGATTGCTTGCATCCAAAGGCGTTGAAGTGGTGGAATTTGATATTTTAGATCCTAGAGATGTTATGGGGTACTTATATGATCGTGGTTATCTCTCTGTTTTGTGGGAGTGTGGAGGGACACTTGCTGCATCTGCTATTTCTTCTGGGGTCATACACAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCATTTGTCGCTCCCAAAATTATAGGTGGGAAAAATGCACCGTCTCCAGTTGGGGAACTTGGAATGGTAGAGATGACCCAGGCTCTGGAACTAATTGATGTTTGCTATGAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACCCGACATACTTGTTAGTGGGTTTCTGCAACCAGTTCCTGACTTGACACCTACTATTCCATCAGTACAAGAAACTTCAGCCATTGATCCTACCATTTCTCCTTATGAATCAAGCATCATTTTCTTTTACAAGACATGGGATCCATATGGTGCCTTCTCAAATTTTTCACTCCATCCAATTCAGATGCCTGATGAAAATGAAGAACTTGTCACCTGGTCCAGTGTAGAGCATTATTACCAG....................................................................................GCACAAAAGTTTGTTGGGGTATCTGATCCTGTAGCTAAAAGCTGTATTGAAGAATTAAAATGTGCAAAGAGCCCCGAGGAAGCAGCACGGATTGGAAGGAGAATACAGAGGCAGCAACCTAATCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACCAGACTGGGAATCTATCAAGATTGACGTCATGTACAAGGCCTTACAATGCAAGTTCACTACATACCCCTATTTAAACTCTTTGTTGCTCTCAACGGCGGGATCTGTTCTTGTGGAGGGTTCACCACATGATCTATTCTGGGGAGGAGGTCGAGACGGAGAAGGCCTTAACTATCTTGGACGATTGCTAATGAAGTTGAGATCTGAGCTCTTAGGTGAGTCTTCAACCAGTCAAAAATCTTTGCTTCCTCAAACTTCAGAAAATAATTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343448" ref_strand="+" ref_description="SGN-U343448        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: SJCHGC09205(evalue: 3e-05, score=52.4)">
      <seq>aaaagcggtttttcacctttcctaagaagatgagtcactcctatagtccttttaggtttctgagttctagcaaacaaagaaatttgtataagttttcatgttgatggaagactctgcatgcgggagcttgacaaagcagaacgatatcaaactcaaataaagcagaaggctggagtaggttaatggctagtctgacgtagtctaaggtttaatgaatcctttgaactgaataggcacaatgtactcaaaggattcatgtagccaaccttacctaatttgtgattgaggcatagaagattatttatgtcaaattcttaccttgaagggaactttagctttcaaaatggaagaagctaaagaaaaagtagtcagaatttctgcattccttaaaaggataaataggaattgcaggacaaattacttattcccgtgttgcttctatctctttcaagtaaatacaataaaaattgcttgagtgagaagtcagttagattcctcattcagtatccatgtgcccaatgcttgcattccaattacactatctttctttctctgttttcccttcatatgatattgctcacattcatctcttgttagtgcatatgctcaagttaaaggattttgtttaggtgtttccaggcgtaaacttccgcaatctatctgtcattccaaatccctaaactctttttagttactgttggtctgctaataagtctgtttaatgagggtcacacattgcagatgtaggaactggggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="66345" stop="67702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66645" g_stop="67402" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U343448" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66645" e_stop="67402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCGGTTTTTCACCTTTCCTAAGAAGATGAGTCACTCCTATAGTCCTTTTAGGTTTCTGAGTTCTAGCAAACAAAGAAATTTGTATAAGTTTTCATGTTGATGGAAGACTCTGCATGCGGGAGCTTGACAAAGCAGAACGATATCAAACTCAAATAAAGCAGAAGGCTGGAGTAGGTTAATGGCTAGTCTGACGTAGTCTAAGGTTTAATGAATCCTTTGAACTGAATAGGCACAATGTACTCAAAGGATTCATGTAGCCAACCTTAACTAATTTGTGATTGAGGCATAGAAGATTATTTATGTCAAATTCTTACCTTGAAGGGAACTTTAGCTTTCAAAATGGAAGAAGCTAAAGAAAAAGTAGTCAGAATTTCTGCATTCCTTAAAAGGATAAATAGGAATTGCAGGACAAATTACTTATTCCCGTGTTGCTTCTATCTCTTTCAAGTAAATACAATAAAAATTGCTTGAGTGAGAAGTCAGTTAGATTCCTCATTCAGTATCCATGTGCCCAATGCTTGCATTCCAATTACACTATCTTTCTTTCTCTGTTTTCCCTTCATATGATATTGCTCACATTCATCTCTTGTTAGTGCATATGCTCAAGTTAAAGGATTTTGTTTAGGTGTTTCCAGGCGTAAACTTCCGCAATCTATCTGTCATTCCAAATCCCTAAACTCTTTTTAGTTACTGTTGGTCTGCTAATAAGTCTGTTTAATGAGGGTCACACATTGCAGATGTAGGAACT-GGGTCG</genome_strand>
        <mrna_strand>AAAAGCGGTTTTTCACCTTTCCTAAGAAGATGAGTCACTCCTATAGTCCTTTTAGGTTTCTGAGTTCTAGCAAACAAAGAAATTTGTATAAGTTTTCATGTTGATGGAAGACTCTGCATGCGGGAGCTTGACAAAGCAGAACGATATCAAACTCAAATAAAGCAGAAGGCTGGAGTAGGTTAATGGCTAGTCTGACGTAGTCTAAGGTTTAATGAATCCTTTGAACTGAATAGGCACAATGTACTCAAAGGATTCATGTAGCCAACCTTACCTAATTTGTGATTGAGGCATAGAAGATTATTTATGTCAAATTCTTACCTTGAAGGGAACTTTAGCTTTCAAAATGGAAGAAGCTAAAGAAAAAGTAGTCAGAATTTCTGCATTCCTTAAAAGGATAAATAGGAATTGCAGGACAAATTACTTATTCCCGTGTTGCTTCTATCTCTTTCAAGTAAATACAATAAAAATTGCTTGAGTGAGAAGTCAGTTAGATTCCTCATTCAGTATCCATGTGCCCAATGCTTGCATTCCAATTACACTATCTTTCTTTCTCTGTTTTCCCTTCATATGATATTGCTCACATTCATCTCTTGTTAGTGCATATGCTCAAGTTAAAGGATTTTGTTTAGGTGTTTCCAGGCGTAAACTTCCGCAATCTATCTGTCATTCCAAATCCCTAAACTCTTTTTAGTTACTGTTGGTCTGCTAATAAGTCTGTTTAATGAGGGTCACACATTGCAGATGTAGGAACTGGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328762" ref_strand="-" ref_description="SGN-U328762        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttcaacaaattatatatcctcaataacaagctcagtattcatcaatcacaaatttcgcagaaattcaatcacaagatcagcaaaacacaatatcaagttcaccaatgataagtatgtgtaatgcattgtcaagtataatgatgcatgtctgacctagtgatacacacccgctgtctctcagtctgggaaccatgggggacatatctgtccatgcatctgtcgcggcgcacgacacgaccctcgataatagtaaccatcgcggcgcgcgatacgtccctcaaaatatagtatccatcgcggcatgcgatacgtccctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaattgtacatcctcttaagtactcattctttctcaatgcacataacacttgtcacaaccaatgcctcataataatgcagatggcaagttcacacaaataatgaggagatgaccattttcataacattgcacaattcaaaaccacacaaacatgaaatcacatcaacaatgattcaacaatccttcatccctttctgaacacatcacacttaaatatttaatcacattgcctttttttttatcctttttttttcatcattaaattaatcaatgtggacaagtcaatccatcaccaatcccgttactcccaaacatataccacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="-" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="82151" stop="72991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81976" g_stop="81668" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81667" i_stop="73672" i_length="7996">
            <donor d_prob="0.181" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73671" g_stop="73291" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="681" r_length="382" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="-" ref_id="SGN-U328762" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328762" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81976" e_stop="81668"/>
          <exon e_start="73671" e_stop="73291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAATTACATATCCGCAATAACAAGCTCAATATTAATCAATCACAAGTTCCGCAGAAAGGCAATCAGAAGACCAGCAAAATACCATATCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTAATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGAATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACCATGATTCAACAAGCCTTCAACCCTTTCTCAACACAACAAACATAATCAATTAATCACATTGCCTTTTTTTTATCCCCATTATTTTCATCACTAGAATTAATCAATGTGGATAAGTCAACCCATCACCAATCCCGTTACTCCCAACATATACCACAAGGACATACACGCATTTCATACACTTAACAAGAGTTTAGAAATCCACTTGCCTCAAATAGTCGAACAGTCACTCCGGAACATGAGTCTTTCCTTTTCATTCGGCCTCCAAATAAATGCAATCTATTCAAGTCCATAATTATAGTAAGATTTCGAAACTAACAATACCCATATTATTACAGGTTTAGCATAGACTCGAAAACCTACTCAAATCTATAATAAATTTTCTAAATCTTGATACCCACTTATCTATCAAGTTTCACATTTTATAAATTTCAAATCTATTTAGTTTTAATACCTCCAATTCTCATAACTTTAATGGTATTCAAGTAATACAATACATTTAGTATTTAATTATCTATCTCAATATGTCAAAACCGAATGTATAACATGATAACCAAAGAAAATAATTAAATCAAACTAACGTCTTAGCACACTAGAGAAAACGAAGCAATCTAATTTAATTGTTTCAACCCATACTCACATATAATACTTACGTATATAGTTATCTGTACTACACTATTAATAATTAATGAGAGATTACCCTTCCAATCTTTAATCAATAGAAACAAAAATCAAATTCAATTAATTTATTAAACTATTTACAATAGTGCAAACGGACAAATTGAAAATTAACCTACTAGTTAAAGTCATGGCACCATTACTCCTCAATCATTACTTCTCTGTATGTTATTATTATGTCCCTCACTTTCTCCAAATTTCAACATATCAGTGCGTAATACTAACGCCAATAGCCACCCATTTTCACTTCCAATTTCCTTTACACTCGCCAACATTAACATCAATCAAACCTACATTTTAATGAAATTAAGATAAGTTCGAATAATAGAATCACCTGAAGCTTGCTGCCGCTATTCGTCGTACAAGTAGTTTCTCTCCTCAATTTGTTTTAATTATTTAGGGTAATAATTGTGAGCTAGTAAATAAATTAATATTAATAAGTCTCACTATTTTTTTTATCACACATGGGCCATGTGGTAAGGATATTATATAGATGACAGAATTGACCCATCAGCCACCTAATAAAAATTTATTTATTTAACATCACTCATCAACTAGACAATTAAAATTAACAAATAACTCAAAAATTTCCAAATCTATTTCACAAATTGATCAAAAGTTACTCGAGACAACTGCGAGATGGCTAAAACGGTAATTTTGTGAAAATTTCCACAAATGACTTTCTGGGTCATTACACTATCCACCACTAAAAACCATGTTCGTCCTCGAACATAAGGAAGAAGAAGGAGGACTAACCAACACGACCAAAAGCCTGAGGTATGATTTTTCAAAGTCATATTCATCTCTCCGAGTGATAACCTCATCTTTAAGACCATTTCATCTAGAGTAATTATTAAGAACTGAACTTTGGAATCAAAATTTGAAAGATCTACAAATTAGGAGGGATTATCAAGCCACAAGCTAACCCATAAACTCAAATTAGAGTAACATCCACTAGACCTTAACACAACCATCATAATAGATCTTTTCTCACATAACCAAGATGAAATTATGAATCAATACTTGGCTACAACTCCAAGTGGACTTTAACCAACCACCACACACTCATAATGCACAAATCATCACAGATCTTTCAAGATTTCCTTTTCCTAACATAGTCTTTTCATGAGCTTAAGCTATAAAAATATGATCTTTAGACATCAATACAAATCAAGTGAGAATCAAGCTTATCTAACTCAAAGAATAACAAGATCAAGTAACCACTTAACTAGCGATTCACTCAAGCTAATAGAACCTCGAACCACACTATCAAAATGTCATATCGATAGCTATTATTGTAGACAACCTTTCATAATGATAGAGCTATACCCAATGCTTCCTTCATTCAATCACACATATTCGAAACGTGACCTCGATGATGAGATGAATACTAAGACTATCAGACAACTGTAGGTATCCATGGTAGCACTTCTATGAACTCTTAAATAAGATTGTGTGTGTAGAATCACTACTTTACTTCAACTTCCCAAACAATAGCATCCATAATTGAAATGAATAAGTCTAACCAAAAATGCCATCCTACCAAGAGGATAATCACAGGATCGGTACACCCGATCCACCACTAGAAATTTACCCAAAAATATGAAACCATGTGTGGGCATAAACACCTAATCACACTTCAAATCGTATCCAAAATGAAATAGGTGGTCATATTAGAATATACAGAACCAAGGTTGAATAACACTTAATACTTCTTCCATAGTGCCCATATCAAATATTTTCATTCATATGACTAATCTCCTTGATAATTTTTTTTTTGCCACTCACAATCAAATTGGCTAGTCTCCTTAATAATATTATACTTGCTTGATTTGTAAAACCCCAAAACTTATCACAGTACTCCATTAGATCTAATACTCTTAATATCAATAAAAACTGTCACTAGTTTAAAATTCTTCTTAGCAAGCATATTATAGTCTTCAAAATTTCGATCTATGATTCTTTCTCTTTCCATTTAAGCTCCAATGATAGATATGAGTCCATCTAGGCTGGATATACTAATTCCAAATCTGATAGTACTTTCCCATTGAGATAAAGTTATTAAATCACCCCCATAGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAACAAAAAATAATGCGGAAGACTTAAACTCATTAATAAAACAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACTTTAAACTACTAACTCTAAGAGTTTCTAAGAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGGAGGAGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTGACGAAGACTGGCTAGAATTACTGTTGAGTTGAGGACGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATATCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCTATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTTCATTCTGTAAATCATCAAGCCTTCTCTATACCAAGGCATCATCAATCCCATTACTTTAATTCATCAAGACTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCTTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCATGCAAACATACCATTAAGCATATAGCAGGGTTTACAATATTATGAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGGGAAACCATAACCTACCTCCACCGAAGAATTGAAATCAAGCAAGTTAATCCTCAAAGCTTGGCGTTTTCCTCTTCTTCTCGATCGTTTCTCTCTCTCCCTTCTTGTTCTTTCTATTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCCAAACGTCCCTTAAAACGTGTAAGGAAATCCGATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCTTGACGGTCCGTCGTAGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACACATAGTCAATTCTTTACAAACTTTCAGATATCATGTTTTAACTACCATTTACACTCGTCATATGCCTTGTGCCAAAATTTGAGAAATCCTTCATCACCCAATAATTATGTATACTATAAAATCAACCAACATCAAATGCCTATGTAACACATCAAAACAGCTAGTATCATCCCGTCAACAAAGTAGTTTCAATTTTCTCAAAATTCTCATTAATTATGTAAAATTGTAGATCCACACCGTTGAACATCAATAAGTTACCTATCATAATTTGAATAAATTAGCCCCACATAACAACACAAAATCTTACACATTACACTGTTTTTTTTTCACTCAAAACAAAACTCTACATTCTTAAAAATTGCTGACGAAAACCTGGTACGTCTGCACCAAACAAATTCACATCCATAGTCATATTAGATATTATACATGAAAATTCATACGTCCTTCAACTTCAAACCAAAATTCTAAATGAAAGGTCTTATTCTTTCGTTTCGCTTAAATTCTTCTTATGGCACAAAATTTTGAGTATCTTGAACTCTTCAATACATCAACTCTTGTTTCTTTGGTTGACTCGCTTACCAATATTATCCTTTGACCAACAACCTATGGTATTTTCATCTTATCCTTGAAATAAAAATATTACATGAAATCCCATTTAGGTATAACAATCAAAAGTAACCAAATTTACTACTCAAATTATTTTTTAGTCCTTCAAATGCTTCATACTCAATGTGATCAATCATTTCTTACCCCTTACCAATTCATACCTTGACAAAACACACTACCACAAATCTAAACTCACAATGAAAAACTTGAATTTTGAATTCAATTATGTAACTCAATCCTTTTATCTATTGAAATTAACTCATACATAGAAAATATTTACATATTTGGACATCTTAGCTTATTATTGATCGCCTATCCATCCACCTTGTCATACCCTTTCTTAAAAATCCAATGGTACCCGTTACCAAATTCGAAACTATAAAAGAACTTATCACCACACTCGAGTCGAACTGTTTCATCAACATGAATCTTTAAACCCAGTTATACCAATCCAATACAAAGAACTAACCCACTTTTATCCGCACTTCCTTACTAAAACTCTTAATTGTCTTCACATAAGTATACTCTTTAGGACTTCCTTTACCCATATGCTGCCATCCTAATATCGATTCACTTTCATGGAGCTTACGATCATATCACCACTCATTTAAAATTCTCGAGATACACTTTACAACCTAAACACATCAATATCGTACCAAAGATCCACCACTAAAATCTTTCTTATAAATGATGCTTAACTCAAATATCCATAGTAGCAAACCAGTTGATTTCTCAAATGTTAATGCAACATCAAACTCATTGTGCAATCATGTTATACAACTTATAATTCCTTTTGTAGTTAGTATTCACACTTAACAATCAACATATCTATTTTCGTATACCGCTAATACCATATCGTGAAAGTCCATTACATCCACCACTAATACACATCATACCTATCGAGAAGATTGTACCCAAATAGCCCACACATTTTTGTCCGTTAAGTAACTATAATAAACTACTAAATTCAACTAGTCACTCATCCAAAGTGATAGACATTCCTTTGTAGTTCAGGTCCATAGCAAGAGTAACACAATCCATAACACTATTCAAGTAGGAATCGGTATTATTTTAATAGTCATATCATAACCCTCTTTGGTATACACTGAATCTATGAAACTACAACAGAGATTTTGACCTCATCATTCACTAAGTAGCTCATATATGTTATGAACTTTTTACTAAATATAGCTTTGAAAGTTATATTCCCATTATCATCCATCCATTTAATCGTTATACCCCCCTTGTAAAACTGCTCTAAATATTGCATATACCACACAAGTAATATGCACTAGGGTAACTAACCTTACACAACCCCTTTAAAGTTTTTTTTAAACATTCTAAATCTAACCACACATATGTTCCATAAATATATCACCATACCTAAGTACCAGATCTAACATCCAAATCATACACGACACCAACTACTAACATGAGAAACTATGCATGAGTCACCACATAATGAGAGGGAATGGAATGAAGCGAAAAGAATAAAATCAGACCAAGACGCACGATAGAGTTCCAAAAAGTGAAGATTTTTCCTAAAAGTCACCATAGCTTCTCGAAGATAAGTAAAGACGTCTCCGTAAAGATCCTCGAGACTCTTCTTAGACTCGACTTGTATACACGTGAGACCTATGAACCTGGGGCTCTGATACCATTTTGTCACGACCCAAAACTGGGCGTGATGGCACTCGTCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACCATTACAATAAAGTGCGGAAGTAAAATATAAGTAACTTAATAAAACCCCCAAAACCTGGTAGTCACGTGCACAAGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAATTTGTTTCTAGAATAGAACAAGATCATAATTAAGGAGAAGAAAGTCTGCTGCGATGGAAACAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCCAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCAAACCTCCACAACTACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAGTTTACATAGCACGTAGCTCAACAACAACACTTAGACAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTAATCAATCACAAGTACCGCAGAAAGGCAATCAGAAGACCAGCAAAATACCATATCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTAATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGAATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAATCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACCATGATTCAACAAGCCTTCAACCCTTTCTCAACACAACAAACATAATCAATTAATCACATTGCCTTTTTTTAT-CCCCATTATTTTCATCACTAGAATTAATCAATGTGGATAAGTCAACCCATCACCAATCCCGTTACTCCC-AACATATACCACAAG</genome_strand>
        <mrna_strand>TTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAATTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTA--TG---TG---T--AATGCATTGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCTGGGAACCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCAAAATATAGTATCCATCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATTGTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGGCAAGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAATTCAAAACCACACAAACATGAAATCACATCAACAATGATTCAACAATCCTTCATCCCTTTCTGAACACATCACACTTAAATATTTAATCACATTGCCTTTTTTTTTATCCTTTTTTTTTCATCATTA-AATTAATCAATGTGGACAAGTCAATCCATCACCAATCCCGTTACTCCCAAACATATACCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="-" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="78568" stop="77632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78268" g_stop="77932" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78268" e_stop="77932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATATCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCTATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339313" ref_strand="+" ref_description="SGN-U339313        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: SJCHGC09205(evalue: 2e-05, score=52.4)">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="-" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="82335" stop="73143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82035" g_stop="81477" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="-" ref_id="SGN-U339313" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82035" e_stop="81477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTAATCAATCACAAGTTCCGCAGAAAGGCAATCAGAAGACCAGCAAAATACCATATCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTAATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGAATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACCATGA</genome_strand>
        <mrna_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322346" ref_strand="+" ref_description="SGN-U322346        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT3G02750.2 | Symbol: None | similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:At5g36250.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:XP_465582.1); contains InterPro domain Protein phosphatase 2C-like (InterPro:IPR001932) | chr3:593214-596527 REVERSE | Aliases: None (evalue: 1e-146, score=517) genbank/nr: gi|56117813|gb|AAV73837.1| protein phosphatase 2c [Medicago sativa] (evalue: 6e-158, score=560)">
      <seq>ctacatctgctgttggagttaataagaagaagagtaggagggtatctaggaattcttccttcaacaaatgcaaggaagaacagctgcgtaagactcctggacgattgttcttgaatggatcgagcgaggcagcttcactcttcactcagcaaggcaagaaaggaacgaatcaagatgccatggttgtttgggagaacttcgcttccagaacagatactgtattctgtggtgtttttgatggccacgggcctcatggccatatggttgccaagcgagtcagagattcccttccctcgaagctaagtgcacattgagaagttagtctgaaaagtgaggatgtcctaaaggagatcagtctaaatgctggggctagcctatatcccgaggatgcttcccttatatccgcggccgatgactctagggtttcaattgatgttgaagagactggaaagcacccagagatctttcagactttgaaggaatcatttttgaaggcttataaggttatggacagggaactgaaaagctacactaatattgactgcttctgtagtgggacaacagctgtaacccttattaaacagggccaggatcttgttataggaaatgtaggcgactcccgagcaattctaggtaccagagacaaagatggttctctaactgctgtacaattgacagtggatctgaagcctaatctaccagcggaggctgaaagaattcgtaaatgtagagggcgtgttttttctcttcatgatgaaccagaggttgcaagagtgtggttgccaaatagtgactctcctggacttgccatggcacgtgcttttggagatttttgcctgaaggattttggtctcatctctgtacccgaaatatcatataggcgtttaacaggaaaagatgagttcattgttctggcaactgatgggatatgggatgtacttacaaatgatgaagttgtaaagattgttgcatctgcttcatcccgttcgtctgcagctcgatcgctagttgaatcagctgttcgagcctggaggacaaaataccctacttctaaagttgatgattgtgcagttgtttgcctttttcttgattcaaactcaaacaacttgtccactgcttccaatacagaagacagtgacaagactgtctcaatgaaagcaaatgaagttggtgccaagacaggtgatgcctcaggtccaactgcatttactcgttctggaactgttcgagaagttgaagtttcagaagaagagatagaggaagcatcagaacatgaggaactgctctcagaggtgggggcggaatggtctgcactggaaggggtttcccggctgaacacattattgacactgccaaggtttgtgcctgacaaggacgagaattaaactgtctggaatcgaactcaaagaagcaacagagggtgagatttccaagtttggatttatttctttcggttatttttcaatttttatttagttccatccattttaaggtctcacatatctatctactgggaggaaaaaaaaataggggcattttatatttgttgtagactggaaaggtggccccagctatattagagtgtttgggaatcatccattctcttcctagtgttggtaaaagtggaatttttgtaaaaaccaactctcctgtcttggttgctagctttcttttctttcgcataaataccaagattgtgtgtcccttatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="99893" stop="116057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100193" g_stop="100386" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100387" i_stop="101535" i_length="1149">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101536" g_stop="101925" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="584" r_length="390" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101926" i_stop="102014" i_length="89">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102015" g_stop="102132" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="702" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102133" i_stop="105938" i_length="3806">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105939" g_stop="106162" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="926" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106163" i_stop="106292" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106293" g_stop="107084" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1718" r_length="792" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107085" i_stop="107273" i_length="189">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.833" a_score="0.43"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107274" g_stop="107319" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1719" r_stop="1764" r_length="46" r_score="0.435"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U322346" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100193" e_stop="100386"/>
          <exon e_start="101536" e_stop="101925"/>
          <exon e_start="102015" e_stop="102132"/>
          <exon e_start="105939" e_stop="106162"/>
          <exon e_start="106293" e_stop="107084"/>
          <exon e_start="107274" e_stop="107319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTGCTGTTGGAGTTAAGAAGAAGAAGAGTAGGAGGGTATCTAGGAATTCTTCCTTCAACAAATGCAAGGAAGAACAGCTGCGTAAGACTCCTGGACGATTGTTCTTGAATGGATCGAGCGAGGCAGCTTCACTCTTCACTCAGCAAGGCAAGAAAGGAACGAATCAAGATGCCATGGTTGTTTGGGAGGTTAGTCCTTCAAATTCATCTTACTATAGTTGCACATAGTTATATTGGACTATGCTTTTATAGGCTGCCTACGTAGTTCTTGTACTTCATATATTGGGTGTGTTTGATCTTAGATTGTTCACCTGAGTATTATGTTAACCCTCTGATTTGTGACTACTTATAACTGTGACATTTGTTGTTTTTCGTCAGCTGATAAAGGGTCCTCTAACAAGCCGTATCAACTGTGGAGCTAGGATTTTCATTAATGGGAGTCAAAATATTAAAAAAATAAAATTAACACATGAAGAAGTCAAGGGACTCAACGAATGATACTATAGATACAAAAAGGATTTTCCTTTACATATTTGCATATTGTATTTTTTCAGTGAAGGGACAAGGTGGCTCCGCTACTGCGCATAATGTGTTCTCTTCTAGAAACCTTCTCTCTTCTTTTTTCTTTTGTCTCTTGTTGTAGGATAGTTGAAAACCTTCTAGTTGTTTATCAAAAAGAATTTTCCTACTAGTTGTGCTTCACTTGTATCGGGTCATTATCTTCTTCAAGCTTCTCCAGGAAATCATCTTTCAGAATGGATAAACTCAAAATCTATTTTCCCCCTTTTGTTTTAGGTTTCAAGTTTGTTTTGTGTATAGGAGGCTTGACATTATTGACCTTGCTAGCATCAGATGAGGCATAGTCAGTTTATTTATTACAGTGGAACTTAACAGACTTGTTCTTCATGTCCATTCCCATTTAAAGGCATGGATGGTTAAAGATAAAATCATGAAAAATCCACCAATCAAAAAAATAAAATAAAATTGGCAATCGATTCTGTAGAACAACGAGAACTTAGTGGATGCATGTGGGAGAAAATAGGATAATAACACGATAATGTATCAGATACTGTGATTAGCTACTGATAACATTCTTTCTAGATTGATAGGCTATAGTTTCCTGGACATGCCTAGAAAGGAATTGTCCATTTTTTTATCAAGCTATGTTTTAGATTTTGCCATTTCTTTCTTTTCTTTGTAGTTTGTGGATTGTTGTTCGACAGAGGATTTGTTCACATTTTTTCATTCTTGCACTGATTTTTCCTAGTGATCCTTCCGTTGTGATTTTGTCTTATATGGTGAGCATCTCCTAATACATCTTTTATGATGAAATTTCAGAACTTCGCTTCCAGAACAGATACTGTATTCTGTGGTGTTTTTGATGGCCACGGTCCTCATGGCCATATGGTTGCCAAGCGAGTCAGAGATTCCCTTCCCTCGAAGCTAAGTGCACATTGGGAAGTTAGTCTGAAAAGTGAGGATGTCCTAAAGGAGATCAGTCTAAATGCTGGGGCTAGCCTATATCCCGAGGATGCTTCCCTTATATCCGCGGCCGATGACTCTAGGGTTTCAATTGATGTTGAAGAGACTGGAAAGCACCCAGAGATCTTTCAGACTTTGAAGGAATCATTTTTGAAGGCTTATAAGGTTATGGACAGGGAACTGAAAAGCTACACTAATATTGACTGCTTCTGTAGTGGGACAACAGCTGTAACCCTTATTAAACAGGTCCTTGACAGATCCAGAAATTTGAATCTAGCTCGATATTATGCTGAAACGTTTGGAAGAATGAACCCCATTAATTCCTTTTCTTGCAGGGCCAGGATCTTGTTATAGGAAATGTAGGCGACTCCCGAGCAATTCTAGGTACCAGAGACAAAGATGGTTCTCTAACTGCTGTACAATTGACAGTGGATCTGAAGCCTAATCTACCAGGTTGGTTTCATTATATTGCATAGGGCTGATTGAACTGATGATGGATCAATTTTCTGGATTTTTGCTTTTGTGCTGATCATCTCACAAGATTACCAACTTGTGTTGATTTGATGAATTATGATGTCATTTAGTTTGGCATAAAAACTTCATTTTACCTAACCATTACTCATTTGTTGCTAAAACTTCCTTTCATTTACCTTCGTCTCTCCTCTCTATTTTGGCCTTCCCTAAATGTACAAACTTCAATTTTGCTGCAATAGTTGCTTCTCTTCAACTCGATTATGAACCATAGTGACCTTTTTTCTTTTGGCTTTGATTCAAAAAAAAAAAAATTGTTTGTTATGTTGCAATTATAGAAGTAACCTTTTCCAATGAGGGAAAATAGAGGTTAAAGTTAGAGGGACTTGGAAAGGAAAAGAACTGAGCTTCTGTATGGTGCCCATCAATCACCATAACAGATACCATGTTCTATCCTTAATTAAAAAAAACAGATACTATGTTCTATTTTGTCCTCTCTTCTTTTTTTTTCTTTTGATGAAGTAAATCCGACTTTTAAACCAACTTCCGAGTTGTCAGCAGTGACCCTCTTCCTACTTTGCTCCCACCGGAACTCCAACCTCTTGGCTGGAAGTGGAGTGCTCTTGCCACAATGAGCAATCTCACTTGTAATTTGCTTCTGTCTTCTTTTCTTTTTCTAATTCATTTTACCATCTCCTTGTTTCTAGGAATTCTTTTATGTTGCTCTATTTGTTTTTATGAAATTATCTTGAAAATAAATAGTCATTATTTTGATAAAATCAATTTTCACATTGATAGACAAGAAGAGAAAGGAAGCATTTGGCCTCCTTGCAGCATTAGAGGGTTTGTTTGGTTATATTACATATTTATGAGGGTTAAAGAGTAGTTTCCTAGCTGTTTCTTGATGGAGTTTCAGTAATAAGGGGGTAAGGGGGACCCGTGAAGTTTGTGCGTAACCGCCTCTGATGGCAAGTTTAGGGAGTAATTTACTAATTTATCTTGTACCAAATTTTTTTATAATTTATGTATTTTCCCCAAATATAACATCGGGGTGGGTGCACTGCATGTTTGAAAGTGTTGTGCTTCTGCAGAACTATATAGTGGATGAATATGAAAACATTGGCAAAGTGTGATGAATTAATCTTATTTTGTTGACTGAAGTGTTGCATAACTAGAAGTATTAGGATCTCATCTATGTGTAGGTGCAGTATCAGGGTATTGGTTGAGGAGATCTTAATGGTGAAATCATCTACTTAAGGTGTTCCCTTAATGTAGAAACTACTTACTATTAGTGGCAATTGAACTGTCAATGCAATCACATCCACTATGATAAATGAATATAAGGAGCAAATCTTTCCAAAAGATTTGGTATTTGAGATGTTTTCCCTTCTCGACAAATTGCAGTTCTTATAAATTATGCTTATGTTGAAATCTTGCAGTTCTTCAAATTTTCTGTACTGCCAATTCTATCCATCTTGCTTCCTCGGCTAAAGGTCTTCTTGTATCCTTAGAAGTCTCATGTTCTCAAGACAGCTTTTTAAACTTCCTATAATTTAAGTGATGTGCACTTGAAGCTCTTTACATCCATGACCAGTTATCAACAAAGATCACTTGTGTTATCAAACTGAAGTGAAGTAAAATGGAGTGGAATGCAGTTACCTTAATTTGGAAGAAATTAAGACATATTATGAAAAAAAATAGGACGGAAAAATCTCTCTTGAATGAAGTAGGGGACAGAGACATCATGTTGGGTGATTTAGAGAACTCAGAGAGTCGGTGGGATTTTGGATATTGTGGATATTGTAAGTGTTGTAAGGTTGAGGAGGTTAAGACTGCAGTGTAAGATGAACGGACAATCGAACTTGATGAAATTTCGGTTGAGTTTTCGAAATTCATAGACAAGGCAAGTTTTGCGTGGCTGATTGGGTTGATTAATGTCATTTTTGAGAAATGCATGACGAAGAGGTGGAGTACAATGATTCCGTAGTACAAGATTAAGGGTGATATCCAAAATTGCAACAATTATAGGGGTATAAAATTATCGAGTCACACTATGAAAGATTGGGAGAAGGTGGTGGAGATGAGGATGAGGGGACCAGTTTGCATTCATGGTAGGGCAATCAACTACTGTCTACATTCATCTTGTGAGGAGGGGACTGATGGAGAAATACAAGGAGAGGAAATGAGAAGTCCTTTCATGATGCTTGGAGTCAAAAAGTGCACAAATGGCTTACATTGGGCCGATAAAGGACATGTATGTAGTCAAGACTCGAGTAAGAACAACAAGAGGAGACTCAAATCATTTCCCAGTTGAGATGGGGTTGTACTAGGGTTCAACACTTGGCTCTTCTATTTGCATTGGTGATGAATGAATTGACACTACATATTCAGGGTGAGGTGCCATGATGTATGTTATTTGCAAATGACATTGTTTTGATCGAGGAGACTCATGTCGGAGTTAACAATAGGTTAGAGGTGTGGATACAAACTTTAAAGTCTAAAGGGGTTCAGGTTGAGCAGGACCAAGGCAAAGTATTTGAAGTGTAAAATTCAGTGATGTTTAGCATGAGGCAGACGTGGAGTTAAAACTTGATACACAAGTTGTCCCAAAGAGAGAAAGATTTAAATATCTGGGTCTTTGATCCAAAGAAATTGGGAGATCAACGATGATGTCATACATCATATTAGTGCTGCTCGGATGAAGTGGAGGCTTGCATCCAGAGTCTTGTGTGACCAGAAGTACTACCAAAACTTATAGGCAAGTTTTATAGAATAGTGGTTAGACCAGCTCTGTTTTATGGGGTGGAGTGTTGATTAGTTAAGAACACTAGGCTCAAAAGATGCAAGTGGAGGAAATGAGGATGTTGAGATAGATGTGTGGGCATACCAGAAGCAATAGGATTAGGAATGAGGATATCCGGGACAAAGTGAGAGTGACCTATGTGGTGGACAAGTTGAGGGAGGGGAGACTGAGATGGCAAGGCATGTGAAGAGGAGATGTGTGGATGCCTACAAGGAGGTGTGAGAGGTACGATATTTTAGGGTCGAAGAGAGGTAGAGGTAGGTCGAAAAAGTATTAAGGAGAAGTGATTAGACAGAATTAATTAGACAGGTGATAGCAGAACTTCAGCTTACCAGGTACATGTCCATAGTACATGACCATAGATAGAAGGGTATGTAATTCACATATAAGGGTAGAAGGGTAGAAGGTTAGTACTTACTAGATAGTTGAGAGTTGTCATATTAGTAGCCTATTCATGTATTTGGCTTGGTGGTATAGAGCACCGTGTCGGTCGTAGTATTAGCCTTTTCATCTAGTAAGTGTATTTTGGCATCTGATATCATTTGTGGTTTAATGTGTATAGGTGATTGCACCTTCTTGTTGTTGTTACGGTTCCTTGGATATATGCTCCACACTGTTTTGCTATTAGATTTCATGTTTCTCTCCACTTCCGTTTTCCTTTTAATTGTTTCTTTGATTTGTTTGTGTCGAGGGTCTTCCAAAAGTAGTTTGTCTACCTCAGAGAGGTAGTGGTAAGGCATGTGTTCTCTACCCTCCCCAAGCCCACTTTGTGGGATTTCACTAGGTTGTTGAGATGCTTGCTTTGCAAATTCTTGGAAGCTGAAGTTTTAGATTTTTTCTGGTGGATGCATTAAACGGATAAAAGCCTGGTGCAAAAATGAAAGCATTCTAGTTTTATCTTTTTGGGATAGGTTACTGTTTAATGCTATTGGTGCTTATTTCAATTTAATGTTCTCCTAATTTCCTCTTCTTCCTAATTTTACAGCGGAGGCTGAAAGAATTCGTAAATGTAGAGGGCGTGTTTTTTCTCTTCATGATGAACCAGAGGTTGCAAGAGTGTGGTTGCCAAATAGTGACTCTCCTGGACTTGCCATGGCACGTGCTTTTGGAGATTTTTGCCTGAAGGATTTTGGTCTCATCTCTGTACCCGAAATATCATATAGGCGTTTAACAGGAAAAGATGAGTTCATTGTTCTGGCAACTGATGGGGTATGAAACTTCAGCTTTTAGTACTTTGTATTCCCCTTATTAAAAAAATGTATACACGGGTTCTGGTATTTCTTTTGCTCAATGTTTATTGCATCTTATTTATCCTAGTCTATATTAATTTTTATGACAGATATGGGATGTACTTACAAATGATGAAGTTGTAAAGATTGTTGCATCTGCTTCATCCCGTTCGTCTGCAGCTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAAAATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTGCCTTTTTCTTGATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGACAAGACTGTCTCAATGAAAGCAAATGAAGTTGGTGCCAAGACAGGTGATGCCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAAGTTTCAGAAGAAGAGATAGAGGAAGCATCAGAACATGAGGAACTGCTCTCAGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACACATTATTGACACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACTGTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTGGATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTTTAAGGTCTCACATATCTATCTACTGGGAGGGAAAAAAAATAGGGGCATTTTATATTTGTTGTAGACTGGAGAGGTGGCCCCAGCTATATTAGAGTGTCTGGGAATCATCCATTCTCTTCCTAGTGTTGGTAAAAGTGGAATTTTTGTAAAAACCAACTCTCCTGTCTTGGTTGCTAGCTTTCTTTTCTTTCGCATATATACCAAGATTGTGTGTACCTTATCAAAGAGATATCGAGATTGTGTGTTTTTCCATCATTGTTATGTTGATTAATAATGTGTGGTAATGCAGTCCTTTTTTCTGGTTCAAGTTGCTGATTATGTTCGTATCTCTTTGATCAACGTTTGCACTTTGTTAATATATGGGGTTGAGATGTTTTAGTATAACATTTGCTTTATTATTTTCAAAATACTTACAAAAGCCAGGCATGCATATAAAGCAGAGAGAACACACCTCATCTGGAAATC</genome_strand>
        <mrna_strand>CTACATCTGCTGTTGGAGTTAATAAGAAGAAGAGTAGGAGGGTATCTAGGAATTCTTCCTTCAACAAATGCAAGGAAGAACAGCTGCGTAAGACTCCTGGACGATTGTTCTTGAATGGATCGAGCGAGGCAGCTTCACTCTTCACTCAGCAAGGCAAGAAAGGAACGAATCAAGATGCCATGGTTGTTTGGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCGCTTCCAGAACAGATACTGTATTCTGTGGTGTTTTTGATGGCCACGGGCCTCATGGCCATATGGTTGCCAAGCGAGTCAGAGATTCCCTTCCCTCGAAGCTAAGTGCACATTGAGAAGTTAGTCTGAAAAGTGAGGATGTCCTAAAGGAGATCAGTCTAAATGCTGGGGCTAGCCTATATCCCGAGGATGCTTCCCTTATATCCGCGGCCGATGACTCTAGGGTTTCAATTGATGTTGAAGAGACTGGAAAGCACCCAGAGATCTTTCAGACTTTGAAGGAATCATTTTTGAAGGCTTATAAGGTTATGGACAGGGAACTGAAAAGCTACACTAATATTGACTGCTTCTGTAGTGGGACAACAGCTGTAACCCTTATTAAACAG.........................................................................................GGCCAGGATCTTGTTATAGGAAATGTAGGCGACTCCCGAGCAATTCTAGGTACCAGAGACAAAGATGGTTCTCTAACTGCTGTACAATTGACAGTGGATCTGAAGCCTAATCTACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGCTGAAAGAATTCGTAAATGTAGAGGGCGTGTTTTTTCTCTTCATGATGAACCAGAGGTTGCAAGAGTGTGGTTGCCAAATAGTGACTCTCCTGGACTTGCCATGGCACGTGCTTTTGGAGATTTTTGCCTGAAGGATTTTGGTCTCATCTCTGTACCCGAAATATCATATAGGCGTTTAACAGGAAAAGATGAGTTCATTGTTCTGGCAACTGATGGG..................................................................................................................................ATATGGGATGTACTTACAAATGATGAAGTTGTAAAGATTGTTGCATCTGCTTCATCCCGTTCGTCTGCAGCTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAAAATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTGCCTTTTTCTTGATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGACAAGACTGTCTCAATGAAAGCAAATGAAGTTGGTGCCAAGACAGGTGATGCCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAAGTTTCAGAAGAAGAGATAGAGGAAGCATCAGAACATGAGGAACTGCTCTCAGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACACATTATTGACACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACTGTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTGGATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTTTAAGGTCTCACATATCTATCTACTGGGAGGAAAAAAAAATAGGGGCATTTTATATTTGTTGTAGACTGGAAAGGTGGCCCCAGCTATATTAGAGTGTTTGGGAATCATCCATTCTCTTCCTAGTGTTGGTAAAAGTGGAATTTTTGTAAAAACCAACTCTCCTGTCTTGGTTGCTAGCTTTCTTTTCTTTCGCATAAATACCAAGATTGTGTGTCCCTTATCAAAAAAAA.............................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322347" ref_strand="+" ref_description="SGN-U322347        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G02750.2 | Symbol: None | similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:At5g36250.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:XP_465582.1); contains InterPro domain Protein phosphatase 2C-like (InterPro:IPR001932) | chr3:593214-596527 REVERSE | Aliases: None (evalue: 4e-36, score=146) genbank/nr: gi|56117813|gb|AAV73837.1| protein phosphatase 2c [Medicago sativa] (evalue: 2e-37, score=157)">
      <seq>ctacatctgctgttggagttaagaagaagaagagtaggagggtatctaggaattcttccttcaacaaatgcaaggaagaacagctgcgtaagactcctggacgattgttcttgaatggatcgagcgaggcagcttcactcttcactcagcaaggcaagaaaggaacgaatcaagatgccatggttgtttgggagaacttcgcttccagaacagatactgtattctgtggtgtttttgatggccacggtcctcatggccatatggttgccaagcgagtcagagattcccttccctcgattctttttgcacattgggaagttagtctgaatagtgaggatgtcctaaaggagatcattctaagtgctggggctagcctatatcccgaggatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="99893" stop="102034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100193" g_stop="100386" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100387" i_stop="101535" i_length="1149">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101536" g_stop="101734" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="393" r_length="199" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U322347" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100193" e_stop="100386"/>
          <exon e_start="101536" e_stop="101734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTGCTGTTGGAGTTAAGAAGAAGAAGAGTAGGAGGGTATCTAGGAATTCTTCCTTCAACAAATGCAAGGAAGAACAGCTGCGTAAGACTCCTGGACGATTGTTCTTGAATGGATCGAGCGAGGCAGCTTCACTCTTCACTCAGCAAGGCAAGAAAGGAACGAATCAAGATGCCATGGTTGTTTGGGAGGTTAGTCCTTCAAATTCATCTTACTATAGTTGCACATAGTTATATTGGACTATGCTTTTATAGGCTGCCTACGTAGTTCTTGTACTTCATATATTGGGTGTGTTTGATCTTAGATTGTTCACCTGAGTATTATGTTAACCCTCTGATTTGTGACTACTTATAACTGTGACATTTGTTGTTTTTCGTCAGCTGATAAAGGGTCCTCTAACAAGCCGTATCAACTGTGGAGCTAGGATTTTCATTAATGGGAGTCAAAATATTAAAAAAATAAAATTAACACATGAAGAAGTCAAGGGACTCAACGAATGATACTATAGATACAAAAAGGATTTTCCTTTACATATTTGCATATTGTATTTTTTCAGTGAAGGGACAAGGTGGCTCCGCTACTGCGCATAATGTGTTCTCTTCTAGAAACCTTCTCTCTTCTTTTTTCTTTTGTCTCTTGTTGTAGGATAGTTGAAAACCTTCTAGTTGTTTATCAAAAAGAATTTTCCTACTAGTTGTGCTTCACTTGTATCGGGTCATTATCTTCTTCAAGCTTCTCCAGGAAATCATCTTTCAGAATGGATAAACTCAAAATCTATTTTCCCCCTTTTGTTTTAGGTTTCAAGTTTGTTTTGTGTATAGGAGGCTTGACATTATTGACCTTGCTAGCATCAGATGAGGCATAGTCAGTTTATTTATTACAGTGGAACTTAACAGACTTGTTCTTCATGTCCATTCCCATTTAAAGGCATGGATGGTTAAAGATAAAATCATGAAAAATCCACCAATCAAAAAAATAAAATAAAATTGGCAATCGATTCTGTAGAACAACGAGAACTTAGTGGATGCATGTGGGAGAAAATAGGATAATAACACGATAATGTATCAGATACTGTGATTAGCTACTGATAACATTCTTTCTAGATTGATAGGCTATAGTTTCCTGGACATGCCTAGAAAGGAATTGTCCATTTTTTTATCAAGCTATGTTTTAGATTTTGCCATTTCTTTCTTTTCTTTGTAGTTTGTGGATTGTTGTTCGACAGAGGATTTGTTCACATTTTTTCATTCTTGCACTGATTTTTCCTAGTGATCCTTCCGTTGTGATTTTGTCTTATATGGTGAGCATCTCCTAATACATCTTTTATGATGAAATTTCAGAACTTCGCTTCCAGAACAGATACTGTATTCTGTGGTGTTTTTGATGGCCACGGTCCTCATGGCCATATGGTTGCCAAGCGAGTCAGAGATTCCCTTCCCTCGAAGCTAAGTGCACATTGGGAAGTTAGTCTGAAAAGTGAGGATGTCCTAAAGGAGATCAGTCTAAATGCTGGGGCTAGCCTATATCCCGAGGATGCTT</genome_strand>
        <mrna_strand>CTACATCTGCTGTTGGAGTTAAGAAGAAGAAGAGTAGGAGGGTATCTAGGAATTCTTCCTTCAACAAATGCAAGGAAGAACAGCTGCGTAAGACTCCTGGACGATTGTTCTTGAATGGATCGAGCGAGGCAGCTTCACTCTTCACTCAGCAAGGCAAGAAAGGAACGAATCAAGATGCCATGGTTGTTTGGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCGCTTCCAGAACAGATACTGTATTCTGTGGTGTTTTTGATGGCCACGGTCCTCATGGCCATATGGTTGCCAAGCGAGTCAGAGATTCCCTTCCCTCGATTCTTTTTGCACATTGGGAAGTTAGTCTGAATAGTGAGGATGTCCTAAAGGAGATCATTCTAAGTGCTGGGGCTAGCCTATATCCCGAGGATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320652" ref_strand="+" ref_description="SGN-U320652        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:24232813-24234565 FORWARD | Aliases: T23K8.14, T23K8_14(evalue: 7e-89, score=323) genbank/nr: hypothetical(evalue: 1e-87, score=325)">
      <seq>taattagtaatcatgaagaaacaaacaatatgaccatttcttctcttcttcttcctcctcctcctcctttcatcaattacaataataataataataatatttatggaaagtctatttccattcatcaacctcatcgattttcgttccgagttatcaatgattcgaatagaacagagttagctactgaagatgctgataaacttgtagatggaatggattttggggaattgtgtgatgagtttgaatgcattagtagcccttctgtggaagctactgctaggcagctagttcgagatattctcgaactacgtgaaggcaatcgtgccctcggtacctttgctgtctctgtcaagtataaggatccagtgagaagttttacaggacgagacaagtacaagagaccattatggataactgatgctctgcagaatcctaaaccgagtgtgcaagaaatggtgatgttatcaacaagtgtgttgaatattaagtggacaataaaaggaaaagcaaagtcattgattggtagcataggaggggatttgatgatcaaagtaaattcaagattcactttgaatcaaataagtggacaagtagttgagcatgaagaggaatgggatttatcaggatcatccatcattgctcaagcttatttctgggcatcgcgacgactatttgctactgttgaagctggaaaagatgtggttgatattgttaatgacttgagttctaaatctgctaaagagaataaaaacatggatgtttatcctgacccttatggtgatccagcaaagttctttcaaagggatgacagtttccaaagagatttttaccaaattgcattgctgctggctgttatatattttgtcgtacagttcttgaggacaactttatgagactcctaattttaacacttgtataattgtaattattaaatctatgtttctataaaaaaaaaaaaaaaaaaaaaaactcgagactagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="112383" stop="116062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112683" g_stop="112835" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112836" i_stop="112939" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112940" g_stop="113148" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="359" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113149" i_stop="113368" i_length="220">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113369" g_stop="113449" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="440" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113450" i_stop="113952" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113953" g_stop="114303" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="791" r_length="351" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114304" i_stop="114958" i_length="655">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114959" g_stop="115114" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="948" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="949" polyA_stop="970"/>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-U320652" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112683" e_stop="112835"/>
          <exon e_start="112940" e_stop="113148"/>
          <exon e_start="113369" e_stop="113449"/>
          <exon e_start="113953" e_stop="114303"/>
          <exon e_start="114959" e_stop="115114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAGTAATCATGAAGAAACAAACAATATGACCATTTCTTCTCTTCTTCTTCCTCCTCCTCCTCCTCCTTTCATCAATTACAATAATAATAATAATAATATTTATGGAAAGTCTATTTCCATTCATCAACCTCATCGATTTTCGTTCCGAGGTAAAATGACAAGTTTAAAGTTTATCATTTTTTTTTTGTAAAAAAATAAAATACTGAATTCAGTTGAACCGATCTCATTACTCTAATGTGTGTGTGTGTGGCAGTTATCAATGATTCGAATAGAACAGAGTTAGCTACTGAAGATGCTGATAAACTTGTAGATGGAATGGATTTTGGGGAATTGTGTGATGAGTTTGAATGCATTAGTAGCCCTTCTGTGGAAGCTACTGCTAGGCAGCTAGTTCGAGATATTCTCGAACTACGTGAAGGCAATCGTGCCCTCGGTACCTTTGCTGTCTCTGTCAAGTATAAGGTACGTGTGCGGTGTGTGTATATATATATATGTTGAGATACTCGTAATGATGTCACACTTTTAAACAACATGATGATTTACGTTGTCAGTGTATATAAGTTCATAACTAATTTGATAAGACATTGACAAACAAGCAAATAACTTGTGTAAAATGCAAGTCAACGTTCGATTATCTACTAATCTTCTACGTTAATGTACTGTGTCACACAATGAAATGCAGGATCCAGTGAGAAGTTTTACAGGACGAGACAAGTACAAGAGACCATTATGGATAACTGATGCTCTGCAGAATCCTAAACCGGTAACGTTTTAACATCTCTTTCATTTCTACAAGTTTTATATATTTATATAAACGAAGACATATATAAATGCAACATATTATGATTGTTTTAGTATAGTTTTCTACATATCGTCATCATGATTTGCAAATTTTAGCTTCCGCATGACACTCTGATTATGTAGCTAAGCCCCTGACCTGAACTTTAAGTCGTTGCACACTTCGCTCATGGGGAGTCTATAGCATTCAATAATATCGTCATCATGATTTGCAATTATTAGCTTTCTCTGATTATGTAGCTAAGCCCCTGGCCTGAGCTTAAGTCGTTGCACCGTTCTCTCATCAGGAGTAGTAGGCTATAGCATTCAGTAACATTGTATAGTACATATCGTTATCATGTTTTGCAATTATTAGCTTCCGCATGACACTCTGATTATGTAGCTAAGCCCCTGACCTGAACTTTAAGTCGTTGCACTTTTCGCTCATGGGGAGTCTATAACATTGTATTGTATTGTATTGGTATGCAGAGTGTGCAAGAAATGGTGATGTTATCAACAAGTGTGTTGAATATTAAGTGGACAATAAAAGGAAAAGCAAAGTCATTGATTGGTAGCATAGGAGGGGATTTGATGATCAAAGTAAATTCAAGATTCACTTTGAATCAAATAAGTGGACAAGTAGTTGAGCATGAAGAGGAATGGGATTTATCAGGATCATCCATCATTGCTCAAGCTTATTTCTGGGCATCGCGACGACTATTCGCTACTGTTGAAGCTGGAAAAGATGTGGTTGATATTGTTAATGACTTGAGTTCTAAATCTGCTAAAGAGAATAAAAACATGGATGTTTATCCTGACCCTTATGGTGATCCAGCGAAGGTATTTCTTCTTTATAAAGTCTCAAAATCTTGAAATTATTTTACTGTCCAAATTCATAGGCTTAATTAGATATTGATGGCAGACACTTTTGTTCAATTTCACATAGCTAAGAACATTCTTTTTACCCTTTTTCGTTTAGATTATTTAATAGACACAATATATATACAAGTCCTTTTAACTTGGTCTCAGTTTGCATCTATACCTTCTCACCTTGAGTATGCACAAGTATACTTGAACTTGTATAAAGTTGAACAAGTATACACACATGTCCTACATTGACATAATACACATAGGATGTCGTGTAGGATGTGAATTGCCTCATAGGACGCCAAGTTTGACGTGTGTATACTTGCTCAACTCTATACAAGTTTAGGTGTCTGCTTGTGCATACCAAAGTTGGAAGATATTTATGGCAGATGAAGCCTAGTTAAATGACACGTTTATGAACTATGATTTATTTATAACATACAAAATGTCTGTAATTTGATTTAAACTACTAATTGTAAAAAAAAAATTCTCTTGAACTATACGTGTTTGCAGTCAAATATCACCACATAAATTGTGACCATAAAAAAATATAATTTTGGAGATTATGTTTTATATATGAAGAAAATTTTGCATCTGACAAAAATTGTGTACCTGTATGAGGATGCAGTTCTTTCAAAGGGATGACAGTTTCCAAAGAGATTTTTACCAAATTGCATTGCTGCTGGCTGTTATATATTTTGTCGTACAGTTCTTGAGGACAACTTTATGAG-CTCCTAATTTTAACACTTGTATAATTGTAATTATTAAATCTATGTTTCTATAC</genome_strand>
        <mrna_strand>TAATTAGTAATCATGAAGAAACAAACAATATGACCATTTCTTCTCTTCTTCTTCCTCCTCCTCCTCCT---TTCATCAATTACAATAATAATAATAATAATATTTATGGAAAGTCTATTTCCATTCATCAACCTCATCGATTTTCGTTCCGAG........................................................................................................TTATCAATGATTCGAATAGAACAGAGTTAGCTACTGAAGATGCTGATAAACTTGTAGATGGAATGGATTTTGGGGAATTGTGTGATGAGTTTGAATGCATTAGTAGCCCTTCTGTGGAAGCTACTGCTAGGCAGCTAGTTCGAGATATTCTCGAACTACGTGAAGGCAATCGTGCCCTCGGTACCTTTGCTGTCTCTGTCAAGTATAAG............................................................................................................................................................................................................................GATCCAGTGAGAAGTTTTACAGGACGAGACAAGTACAAGAGACCATTATGGATAACTGATGCTCTGCAGAATCCTAAACCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAAGAAATGGTGATGTTATCAACAAGTGTGTTGAATATTAAGTGGACAATAAAAGGAAAAGCAAAGTCATTGATTGGTAGCATAGGAGGGGATTTGATGATCAAAGTAAATTCAAGATTCACTTTGAATCAAATAAGTGGACAAGTAGTTGAGCATGAAGAGGAATGGGATTTATCAGGATCATCCATCATTGCTCAAGCTTATTTCTGGGCATCGCGACGACTATTTGCTACTGTTGAAGCTGGAAAAGATGTGGTTGATATTGTTAATGACTTGAGTTCTAAATCTGCTAAAGAGAATAAAAACATGGATGTTTATCCTGACCCTTATGGTGATCCAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTCAAAGGGATGACAGTTTCCAAAGAGATTTTTACCAAATTGCATTGCTGCTGGCTGTTATATATTTTGTCGTACAGTTCTTGAGGACAACTTTATGAGACTCCTAATTTTAACACTTGTATAATTGTAATTATTAAATCTATGTTTCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324669" ref_strand="+" ref_description="SGN-U324669        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G05840.1 | Symbol: None | aspartyl protease family protein, contains Pfam PF00026: Eukaryotic aspartyl protease | chr1:1762767-1766280 REVERSE | Aliases: T20M3.11, T20M3_11 (evalue: 8e-81, score=297) genbank/nr: Eukaryotic(evalue: 6e-81, score=304)">
      <seq>caaagttttttcacattgcctagacagcagtgatggtggcggcatatttgccattggacaagtagttcagccaaaagtaaagtcaacaccactagtcccaaatgagccacattataatgttgtcatgaagggaattgaagttaatggtgaagctctaaacatcccaaccactatatttgatgcgggatccaacagaggaacaattattgacagtggtacaacgttagcatatcttcctaacaaagtctatgatgctctcatgagcaagttgatggttcggcaaccagatctgacgactcatcttgtcgaggggaccttccactgctttttctatagtaaaaagattgatgatggtttcccagttgtaacctttcagtttgctaattctctgtctttgaaagtttatccccacgattatcttttcgcagttagtgaaaacgagtggtgtatcggttggcaggacagtggaatgcagacaaaggatggaaaggaaataactctcttaggagatcttgtgttatccaacaagcttgtgctttatgatcttgaaaaccagagtattggctggaccgaatataactgctcttcgagcatcaaagtcagagatggaacttctgggaaggtgtatactgtaggtgctcacaatatttcatcagcttctacgttgaattcaagaatggtttttacgttctttatattagcaatctccctcctatgcaatttgttgaagtgagataccagacaaaaaactgtatagggagtcattgttgtaccatatcattccgcagttcgatgattctttggaataacaagtcttatacctcatcaacatgattcttgacaattacacaaaatacaaacaacactggttttgatgaaacatacagtttctcttctgttctaacacacaggaaccgacctctcgtagatgctgttggtctaagtattcctttcttattctgtttcatttcctgcctgttctcttgggccatgtgatagaagatgctaatagtgaagagatgcaagcaaatgcttgataggatagttttttttttttttttgatgttatttatgagtattttcaatattaatgtaaatcaattgctgttttttgttttgtttttatgagggatgtcatgttaatgtatttcttaatttatgagtgctagataagaagtgttgtttcagcctcaggctgcatttgccagcagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="-" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="122647" stop="115289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122347" g_stop="122243" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122242" i_stop="119873" i_length="2370">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119872" g_stop="119710" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="268" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119709" i_stop="119625" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119624" g_stop="119551" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="342" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119550" i_stop="119037" i_length="514">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119036" g_stop="118946" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="433" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118945" i_stop="118404" i_length="542">
            <donor d_prob="0.630" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118403" g_stop="118328" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="509" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118327" i_stop="118007" i_length="321">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118006" g_stop="117935" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="581" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="117934" i_stop="116220" i_length="1715">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116219" g_stop="115589" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="1212" r_length="631" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1213" polyA_stop="1234"/>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="-" ref_id="SGN-U324669" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1212</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122347" e_stop="122243"/>
          <exon e_start="119872" e_stop="119710"/>
          <exon e_start="119624" e_stop="119551"/>
          <exon e_start="119036" e_stop="118946"/>
          <exon e_start="118403" e_stop="118328"/>
          <exon e_start="118006" e_stop="117935"/>
          <exon e_start="116219" e_stop="115589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTTTTTCACATTGCCTAGACAGCAGTGATGGTGGCGGCATATTTGCCATTGGACAAGTAGTTCAGCCAAAAGTAAAGTCAACACCACTAGTCCCAAATGAGTAAGTATATTTGGTGCCTTTTGTTCCTCTTCCCTACTCCAACTACCACCCCTTCCCCCAAAACAAGATTTGGTATCATCTTATTTGAAGTTGTATATAGTTTCTCCAATTCTGCTCCATTATAAATAAGGAAAATTGCAATCATTGGTTTGTAAATTTGTGCTCCGTTCTTCCAGCTTTGCATCCTTTCAAATTCTATTGGTAGGTTCAATCAGTTTATATCCTATTGAGCGCAATCCATATGCATGCATGCAAGAATTTATGATAGAAAATCCATAAGGAGTTATGTGAAATATCTCAGAAATCAAAGAACATATACTTTCATAGGAATGTAACTCTAATAGGCTTGCAAAATTTTCATTTAGACTTGTATGAGGGAAGTAACAAGGAGGGAACTGATGTGGACTCAACAATCAACCGCCTATTGTTTTGAATTTTTCTCTATGAGAAGTAACTCGACCTCAGACCAAGGGGAAAGAGAAGACTCACTAATTATACCTCTCTCTCAAGAGAAGTAGCTTGCTTCAGCCAGCTTTAGCTTGGATGGGAGTCCGAGCCCGACAGAGTAAGTGATAGGTGATTTATAGTAGCTGACCCAGTCTTGGATGCTGTATTAGCAGTTTTAATGCTCGGTTAAGAAACTTTAATTTAATAAGGGAGTTTTTCTTATATGAAATTTTGATCCTGGTCTTCAAGCTTTGAGGCAAAAGAAAAACACACACTCATCCATTAAAACTTAAAAGGGAGATTACATGAGTAGATAACTGATCTATAGCAACCCCCGAGCTAGAACTAGTGTAGATCTAGTGCTGAATAGGGTAAAAACTATTGCTTTAAATGGATTATGGGGAAAATGCTTGGAGAAAAGTTAAACATGAAGACTGTTCTTAGTGATGGAAAGAAGTGGCAAAAAATAGAAGTGGGTTAAATTGTACAGCAGTTCAAAGGAAACAAATTACTGTGAAAAGCTATTCATAGTTGTTGAAGTCTCCAGTAGAGAATTCCAAAAACCGATTTGAGAACAAATGCAGATATGCTTCTACTTGCTTCAAAGTTCAAATTATTTGATTCTATGCAGTCTCTTTAAAAGAAATAAAATTTTTGGTTTCTGTAAACAGACAGCAAGAATTCAGGAAATATAGGAAATTGCCCAATACATGAAAATATTCTATCAAAGTAGACTTTTGGAGAAAATACTAATTTTATGTTTAAGATATCAAGCTAGGGTGTGTACAGTATGAACTATATACGACTCTAAAGGAGACTCCTAAAAGGGTATCATAAGAATCCATTTCTCCTTACCAAAAAAGAAAACAAAGTCTCCAAATGATAGTTTTTCTTTCTTTTCCTCGAGTAAATTTAAACTGCCTCATTGATTTAGATGAAAACAAAAGATTCTGGAAATAGGAAGGTGTCACCAGTCATGGCAACCTCTTATTGCCTCTTTTGTGTGACGTATGTATGTTTGATGTTTAAAATTCACCTTCCATGAATAGCAACGCCACAAAGTTGCTATGAGTTTTAGAATTTTCATTTCTTATTGTTGTTTACTGGCATATGATCTCCTTCGCGCATCTGCTTCACTCATTGCCCTCACTCCAATTACGTTCTTAAGCATTTCACGATCTAATGTGGGACCAAGTTATCAAGTTATTGGTTACTCCATTCTCCTGCCTTGCCCTGCCCCAAATATCTATTTTTTTTTTGGGGGGGGGGGGGTTGTTGGGGTTAGGGAAGGGTAGGCACATCGATATTTGCCCACATTACTATCTACTGAAAACATTAAAGCTGGAAGCTGCCGCAACCAGTGGTCAAGTGATAAGTGCACACATGAGTCCAAAATGTGGTAGCAAATAAACTTGTTTAGAGACCTAAAAACAGTTTAGTTAAGACCTCAAGAGAACGTGGTGATTTCCTTTTGGAAGACAGTAGTTCAAATGGTCCAGTCCTTCCTCTGGGACACATTATTGTTGGACTTGCAATAGTTCACAGAAGAACTTGAACGAATTGAGAGCTCTCTTAAGTCTAGAGTTGGAATCTCGGGCCTTCCTATGAATCGTATCTTCTTGGTACTAAAAACGACATTAGTTAACTCATCCATATATGGGAAAAAGAAATTTAAAGTTATTTTGAGTTTTTGACTACTGTTGGGTGGTGCATATTGTAAACTTCAGTACTTGCATTCATGTTTGATTAACTAGATTGTCATTTTTGCATTGTTATTCTCGTCATTCACTTCTCTTGCTTTTTCTTTTACTTTTTATTATACCATCATTTTTTACTGTTAAATATCAGTATTTGTCTAAACATGAAATTGGCTCCCTCCATTCTCTATTTCTTGACTTCAACTATATATGTTTTCCACTTTAGGCCACATTATAATGTTGTCATGAAGGGAATTGAAGTTAATGGAGAAGCTCTAAACATCCCAACCACTATATTTGATGCGGGATCCAACAGAGGAACAATTATTGACAGTGGTACAACGTTAGCATATCTTCCTAACAAAGTCTATGATGCTCTCATGAGCAAGGTAGGTTTAGACATTTGAAAACTGTGTGTATGCATGAATACATTAGTTCCTCCTGCTTGATTCTTCATTTTGTCTGTTACCGTAGTTGATGGTTCGGCAACCAGATCTGACGACTCATCTTGTCGAGGGGACCTTCCACTGCTTTTTCTATAGTAAAAAGTAAGGTTCTTTTTACCATCTCCACATGAATATCTTAATTCTTTCTATTAAGATTTGTTTGTGATATCTTTTCCCCCTCTATGATCATGTACACTTTAACATAGTGCCCTCTCCACTATAGTTCTTTCTTTAGCTTTGAATTCTAATGCTGTGTAGAATGACTACACCGACAATAGAATCATTATTCTGCAGTTTTTTTATTTGTTTGATAAGAGGGTATTCTTCAGGTTTTTTTGAGTAGATGCCATTATCTCATTTGACCTTCTCCTAAAATTCTGGTTTCTTTTGAATAACTGCTTCGCTATCGTATTCGGAACGCCATTTTCATGATGGATGTATTAATGTCTTTAATTCAGTGGGGGTTAGATCATTAATTATGAATAATAATAATGCTATGTAACCCCATTCTTATTTTAATCCACTTCTCCAGATATTAGTTGTTGTAATTCAGTTAGTTGCTATAAATAACTTCTAATCTTCATCTCTTTCAACTACTCTTCCTCTGGTGGCGCAGGATTGATGATGGTTTCCCAGTTGTAACCTTTCAGTTTGCTAATTCTCTGTATTTGAAAGTTTATCCCCACGATTATCTTTTCGCAGTTAGTGTAAGTAATCTGGCTTTGCTGAGTTTTCTCCTGATTTCTTCATTTAATCAGATTAGATTTTCTAGTTTACCCAGAAAGCCTTCCTTTTCCCTGTTAACGTATATTGTATCCTTTGACTGCTGTGCAAGTTACTTGTTTTTTCAAGTCATAATCTTGTTGGAATTCAGTAACCAGTACAGACACTATCTTTGTTGGAATTCACGAATTTCGCCCATAAGTGATTGATCTTCAATGTCTTCTTATCTTAGATCTGTTCCTAGCATTCGTGAGCTGTTTGATTTGTCTGGTGATTTTTATGCTATGTTGTTGATATTGGAAATGTTGGCATGAGTTTATCTGATTTCCATGACTTTTTACCATTAAATTCATTCAGTTGTTATAAATTATGTGTAGTCCAATGCAAACAACAGGATACTAAAAGATGGGTCAAAATGGCAGAGACCTTTGTTGTAAGGTGCATGGGAGGAGAAAGCAACTGGATGCACTTGCATTGCAGTTTAAATAACATGACTTACAAACCCCTTTGCTTCATAATTTTGCAGGAAAACGAGTGGTGTATCGGTTGGCAGGACAGTGGAATGCAGACAAAGGATGGAAAGGAAATAACTCTCTTAGGAGGTATTGTTTGAACTGTAACAGTATATGAAAGTAAATCAGCTTAGTTTCCAAATAAAAAGAAAAAGTGAATCAGTTTGATGGTGAATTACGTTTTAGAATTATACATAATTTTATGAAAATTACATTTTGCCCATTTAGTGTGAATTTTCAGTTTAGTGTTAGTTCCTGCAAGTGCAAGTACAAGACAGTGTAGTGGTATTTTGACCTATTGTTAGTTAAGTTTGTTGCCATCCTAAGATACTAAAGATGACTAAATGGATGCAGTATCTTCATACAGTTGACAGGATTTTCATTGATTGGTTTATTGATACTTTGATGCAGATCTTGTGTTATCCAACAAGCTTGTGCTTTATGATCTTGAAAACCAGAGTATTGGCTGGACCGACTATAACTGTGAGTTTAGCCTTACCATTTTATTCAAGGATTTAATAGTTATTAACTTATTTATCAGTCAGTTGTGTAGAAACTGTTTTCCTTGATTGAAATAGTACCAATTATTTTCTGGGTTTTACTTTTGACCTTTAGTTAGCTCTGGGTTCTTTATGTTGCCTTGTTAGGAGAACCTTTTTTTGAGTGACACATATAGATTTCCTTTTGCATTTAAGTAATTAAGTTGATCGAATCATATCATGTGAGTCTCCAGAAATAACTGAACCTAAGATAGTCAGCTGTTGTCTTGGGACAAATTGAAGAAATGGACCAATTCAACTTATTAAACTATGTGACCATCTCATCTAAAATATTACGTATAACGCTCAACTACTTACTAGCCTTCATGGACACCCGCATCCTATTGGACTTCCTTACAGTTAAATTGAGAGACAACTGTGAACTTACATCACTAATTTAATTACTTTAAAACACTCCATTACAGAAAGTCGATTCTTGTTATCTTGAGCTGTACATTTTACAGAAGTAAACCAAACTTCTAAGAGGTTTGTTTCTGTTTTTGTTAAAACCATATGGTATCCGGAATCCACTGGTCCGGTTAATCCATATTTTGCGCCATGTATTAACCATTTTAAGGGGGAGACCTCCTCGGGGGTTTATTCATTCTCAGGAATCGTGTTCAGAATTTCTGATTAAGGGTGGAGAGACCCATTCATCACACCACACCCCGATGGTATGATTCAGTGGGGTCTTGGTTAATAATTATGTTTCCTTGTTAGAAATGTCTATGAGAGACAGTTGACTTCTGATGAAATAGAAAAAGAACAGTTGATATGAAATTTCATGCTTTGAATTTTTACACGATACATACAAGTTGTTTCATGTCCATCCCATAGTTATCTACACCTTATCTTGATGCCTCAATCTAAGCTTTTTAATATAAGCCACAAGAGATTATTTTGTATAAAATTATGGCGAAGGTATATCATATCTGCCACATGCAGCAGGATTTCTCATGCCACTCGTAGTAACTTGACTAACTTCACATTTGCAAAGACCTTAATTTGTTCCTTCATTCAGTAGCAGAGCTCTTATCTGGGCATACTAAAACCTTTAGTACTTTGACAAGCACCCAATACGAAACAATTTTGATGTTTCCTTATTTTATTTACATGTTATACACAGCAAGATTTGTACTTTTGATGGGGATTCACATGCATGTTAAATGCCCTGTTAATGGCTTTATATATAAGTTTTTTTTTAATATTATTATTATTATTATTTATATTATTTATATAAGCTATAGTTATATGATTAGGTTTCCATTTTTCTTTGGCCAATTAGAGATATAATTGTGGAGGCTAACTTGTGAGGAAAAAGATTTAGAGAATGCATGTTGTATGTGTTGAAGATGCGTGACCAGCTCATCTAATAACTTAAGTTCTTAGAGAAAGCACATATTAAATTATATTATATCTCAGTATGCTCCCTCACGTGTGGGTGTGATTCTTTATCACGGGCCAAGCACGTGATTATCTTTTCTGATAATGAGTGGCAGTGAAACTCGAAATCAGAACTTCTGCCTCGTGTGTGGGCTATCTTTAGCAGTATGATAAAATCTTCTGTTTTCAGCACGTTTTCCATACTTTACTGGAAGACTGACATTGAAGATGGGACGTTTTCTTAACAGTGCTTGTTCTAAAATTGTTTTATGTCAGGCTCTTCGAGCATCAAAGTCAGAGATGGAACTTCTGGGAAGGTGTATACTGTAGGTGCTCACAATATTTCATCAGCTTCTACGTTGAATTCAAGAATGGTTTTTACGTTCTTTATATTAGCAATCTCCCTCCTATGCAATTTGTTGAAGTGAGATACCAGACAAAAAACTGTATAGGGAGTCATTGTTGTACCATATCATTCCGCAGTTCGATGATTCTTTGGAATAACAAGTCTTATACCTCATCAACATGATTCTTGACAATTACACAAAATACAAACAACACTGGTTTTGATGAAACATACAGTTTCTCTTCTGTTCTAACACACTGGAACCGACCTCTCGTAGATGCTGTTGGTCTAAGTATTCCTTTCTTATTCTGTTTCATTTCCTGCCTGTTCTCTTGGGCCATGTGATAGAAGATGCTAATAGTGAAGAGATGCAAGCAAATGCTTGATAGGATAGTTTTTTTTTTTTTTTTGATGTTATTTATGAGTATTTTCAATATTAATGTAAATCAATTGCTGTTTTTTGTTTTGTTTTTATGAGGGATGTCATGTTAATGTATTTCTTAATTTATGAGTGCTAGATAAGAAGTGTTGTTTCAGCCTCAGGCTGCATTTGCAAGCAGA</genome_strand>
        <mrna_strand>CAAAGTTTTTTCACATTGCCTAGACAGCAGTGATGGTGGCGGCATATTTGCCATTGGACAAGTAGTTCAGCCAAAAGTAAAGTCAACACCACTAGTCCCAAATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACATTATAATGTTGTCATGAAGGGAATTGAAGTTAATGGTGAAGCTCTAAACATCCCAACCACTATATTTGATGCGGGATCCAACAGAGGAACAATTATTGACAGTGGTACAACGTTAGCATATCTTCCTAACAAAGTCTATGATGCTCTCATGAGCAAG.....................................................................................TTGATGGTTCGGCAACCAGATCTGACGACTCATCTTGTCGAGGGGACCTTCCACTGCTTTTTCTATAGTAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGATGATGGTTTCCCAGTTGTAACCTTTCAGTTTGCTAATTCTCTGTCTTTGAAAGTTTATCCCCACGATTATCTTTTCGCAGTTAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGAGTGGTGTATCGGTTGGCAGGACAGTGGAATGCAGACAAAGGATGGAAAGGAAATAACTCTCTTAGGAG.................................................................................................................................................................................................................................................................................................................................ATCTTGTGTTATCCAACAAGCTTGTGCTTTATGATCTTGAAAACCAGAGTATTGGCTGGACCGAATATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTCGAGCATCAAAGTCAGAGATGGAACTTCTGGGAAGGTGTATACTGTAGGTGCTCACAATATTTCATCAGCTTCTACGTTGAATTCAAGAATGGTTTTTACGTTCTTTATATTAGCAATCTCCCTCCTATGCAATTTGTTGAAGTGAGATACCAGACAAAAAACTGTATAGGGAGTCATTGTTGTACCATATCATTCCGCAGTTCGATGATTCTTTGGAATAACAAGTCTTATACCTCATCAACATGATTCTTGACAATTACACAAAATACAAACAACACTGGTTTTGATGAAACATACAGTTTCTCTTCTGTTCTAACACACAGGAACCGACCTCTCGTAGATGCTGTTGGTCTAAGTATTCCTTTCTTATTCTGTTTCATTTCCTGCCTGTTCTCTTGGGCCATGTGATAGAAGATGCTAATAGTGAAGAGATGCAAGCAAATGCTTGATAGGATAGTTTTTTTTTTTTTTTTGATGTTATTTATGAGTATTTTCAATATTAATGTAAATCAATTGCTGTTTTTTGTTTTGTTTTTATGAGGGATGTCATGTTAATGTATTTCTTAATTTATGAGTGCTAGATAAGAAGTGTTGTTTCAGCCTCAGGCTGCATTTGCCAGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="39400" PGL_stop="43129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39400" e_stop="39540"/>
            <exon e_start="41459" e_stop="41736"/>
            <exon e_start="43105" e_stop="43129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39400" e_stop="39540" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.623">
            <gDNA_intron_boundary i_start="39541" i_stop="41458" i_length="1918"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="41459" e_stop="41736" e_length="278"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41737" i_stop="43104" i_length="1368"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="43105" e_stop="43129" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39400" stop="39540"/>
              <exon start="41459" stop="41736"/>
              <exon start="43105" stop="43129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGTTGAGAAACAAAGAAGTCGCTTCAGTCAAGGTTTTGTGGAGGAGTCAGTCCGTAGAGGGAGCTACTTGGAAAGCAGAAGCAGCCATGAAAGACAAGTATGCTTACCTTTTTCCTTTCGATTCCACTCCAGCTTGAG : GTTCAGGTTCTCACCATCCAGATCACGCATAGATCGATTTTCCGATCTCCAGTTCAGCAGATTTAGTGGTGAGTCCTCATTCTCCGAGGACAACAATCATTAGTTTTATTTCAGTCTTTAGTCATTTAGTTTCAGTTTTTGCTAGATAAAACTGGGGCTTGTCCCAGTATTTCTAGTCTAGTTTAGAGGCTATTTTCAGACATAGTTAGATTCAGCTGTATTAAACTCATTGTTTTCAAATATCTCAGTTATAGAATATGGGTATTCCCCATCTTTTC : AAAAAATATATATAACAAAAAAAAA</gDNA_template>
            <first_frame> E  G  *  E  T  K  K  S  L  Q  S  R  F  C  G  G  V  S  P  *  R  E  L  L  G  K  Q  K  Q  P  *  K  T  S  M  L  T  F  F  L  S  I  P  L  Q  L  E  :  V  Q  V  L  T  I  Q  I  T  H  R  S  I  F  R  S  P  V  Q  Q  I  *  W  *  V  L  I  L  R  G  Q  Q  S  L  V  L  F  Q  S  L  V  I  *  F  Q  F  L  L  D  K  T  G  A  C  P  S  I  S  S  L  V  *  R  L  F  S  D  I  V  R  F  S  C  I  K  L  I  V  F  K  Y  L  S  Y  R  I  W  V  F  P  I  F  S :   K  N  I  Y  N  K  K  K </first_frame>
            <second_frame>  K  V  E  K  Q  R  S  R  F  S  Q  G  F  V  E  E  S  V  R  R  G  S  Y  L  E  S  R  S  S  H  E  R  Q  V  C  L  P  F  S  F  R  F  H  S  S  L  R :   F  R  F  S  P  S  R  S  R  I  D  R  F  S  D  L  Q  F  S  R  F  S  G  E  S  S  F  S  E  D  N  N  H  *  F  Y  F  S  L  *  S  F  S  F  S  F  C  *  I  K  L  G  L  V  P  V  F  L  V  *  F  R  G  Y  F  Q  T  *  L  D  S  A  V  L  N  S  L  F  S  N  I  S  V  I  E  Y  G  Y  S  P  S  F   : Q  K  I  Y  I  T  K  K   </second_frame>
            <third_frame>   R  L  R  N  K  E  V  A  S  V  K  V  L  W  R  S  Q  S  V  E  G  A  T  W  K  A  E  A  A  M  K  D  K  Y  A  Y  L  F  P  F  D  S  T  P  A  *   : G  S  G  S  H  H  P  D  H  A  *  I  D  F  P  I  S  S  S  A  D  L  V  V  S  P  H  S  P  R  T  T  I  I  S  F  I  S  V  F  S  H  L  V  S  V  F  A  R  *  N  W  G  L  S  Q  Y  F  *  S  S  L  E  A  I  F  R  H  S  *  I  Q  L  Y  *  T  H  C  F  Q  I  S  Q  L  *  N  M  G  I  P  H  L  F  :  K  K  Y  I  *  Q  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39401" stop="39540"/>
                    <exon start="41459" stop="41561"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVEKQRSRFSQGFVEESVRRGSYLESRSSHERQVCLPFSFRFHSSLRFRFSPSRSRIDRFSDLQFSRFSGESSFSEDNNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="48024" PGL_stop="51520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48024" e_stop="48076"/>
            <exon e_start="48792" e_stop="48908"/>
            <exon e_start="50966" e_stop="51520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="0.981"/>
          <exon-intron don_prob="0.697" acc_prob="0.993" e_score="0.983"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="48024" e_stop="48076" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48077" i_stop="48791" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="48792" e_stop="48908" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.697" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48909" i_stop="50965" i_length="2057"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="50966" e_stop="51520" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48024" stop="48076"/>
              <exon start="48792" stop="48908"/>
              <exon start="50966" stop="51520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323051" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48908"/>
              <exon start="50966" stop="51327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCAAAGGAAAAAAAACAAGAGCAAGAGAAACCGGCGACTTAGGGGTGAAAG : GTCTCCTTTTTTTATGGGAATATGCTGAAACTAGTTTCTGAAATGTTGTGCACTAGAGGAGGTCAGAAGTTGAGGCCTTATCTATGTGCGCAAGTTAGTGGTTTTCATACTTCAAAG : CCTGCCTTAGCACCTAGAAGCTTTTTCGGGGTGGAAGATTTTGTTGATGATGACAATAGTCGTCCATATACTTACCAGAAGGGGAAAAAATCGAAGAACCCAAACAAGCATGTGTCTTTCAAGCAACGGACTGTAGCTTACATGGAACCGTTTACACTTGATGTTTTCATATCAAAGCGCTTTATTTCAGCGTCAATCACCCATAGAGTTACATGCAAACAGGTTGCAGTAGCTGGTACAAACTCCAAAGATATCAAGGCAGTTCTCAAATCACGAAGTGATATTCCTGCATGCTTGTCTGTCGGACAGATCTTGTCCGACAGGGCAAGAGAGGCTGATGTATACACTGCTTCTTATACACCTAGAGATAGGGACAAATTCGAAGGGAAAATTAGAGCAGTTGTTCAGTCCCTTATTGATAATGGTATCGACATCAAAGTTTATCTTGACTGAAAAAAGGTACTATGTCTACCCGTTGTATCCAAGCATATTAAATCATCTTAAAGTAATGAACCCTTATTGCAGTCTACTTAGTATTTCTTATAATCTGAGATT</gDNA_template>
            <first_frame> V  Q  R  K  K  N  K  S  K  R  N  R  R  L  R  G  E  R :   S  P  F  F  M  G  I  C  *  N  *  F  L  K  C  C  A  L  E  E  V  R  S  *  G  L  I  Y  V  R  K  L  V  V  F  I  L  Q  S :   L  P  *  H  L  E  A  F  S  G  W  K  I  L  L  M  M  T  I  V  V  H  I  L  T  R  R  G  K  N  R  R  T  Q  T  S  M  C  L  S  S  N  G  L  *  L  T  W  N  R  L  H  L  M  F  S  Y  Q  S  A  L  F  Q  R  Q  S  P  I  E  L  H  A  N  R  L  Q  *  L  V  Q  T  P  K  I  S  R  Q  F  S  N  H  E  V  I  F  L  H  A  C  L  S  D  R  S  C  P  T  G  Q  E  R  L  M  Y  T  L  L  L  I  H  L  E  I  G  T  N  S  K  G  K  L  E  Q  L  F  S  P  L  L  I  M  V  S  T  S  K  F  I  L  T  E  K  R  Y  Y  V  Y  P  L  Y  P  S  I  L  N  H  L  K  V  M  N  P  Y  C  S  L  L  S  I  S  Y  N  L  R   </first_frame>
            <second_frame>  F  K  G  K  K  T  R  A  R  E  T  G  D  L  G  V  K   : G  L  L  F  L  W  E  Y  A  E  T  S  F  *  N  V  V  H  *  R  R  S  E  V  E  A  L  S  M  C  A  S  *  W  F  S  Y  F  K   : A  C  L  S  T  *  K  L  F  R  G  G  R  F  C  *  *  *  Q  *  S  S  I  Y  L  P  E  G  E  K  I  E  E  P  K  Q  A  C  V  F  Q  A  T  D  C  S  L  H  G  T  V  Y  T  *  C  F  H  I  K  A  L  Y  F  S  V  N  H  P  *  S  Y  M  Q  T  G  C  S  S  W  Y  K  L  Q  R  Y  Q  G  S  S  Q  I  T  K  *  Y  S  C  M  L  V  C  R  T  D  L  V  R  Q  G  K  R  G  *  C  I  H  C  F  L  Y  T  *  R  *  G  Q  I  R  R  E  N  *  S  S  C  S  V  P  Y  *  *  W  Y  R  H  Q  S  L  S  *  L  K  K  G  T  M  S  T  R  C  I  Q  A  Y  *  I  I  L  K  *  *  T  L  I  A  V  Y  L  V  F  L  I  I  *  D  </second_frame>
            <third_frame>   S  K  E  K  K  Q  E  Q  E  K  P  A  T  *  G  *  K  :  V  S  F  F  Y  G  N  M  L  K  L  V  S  E  M  L  C  T  R  G  G  Q  K  L  R  P  Y  L  C  A  Q  V  S  G  F  H  T  S  K  :  P  A  L  A  P  R  S  F  F  G  V  E  D  F  V  D  D  D  N  S  R  P  Y  T  Y  Q  K  G  K  K  S  K  N  P  N  K  H  V  S  F  K  Q  R  T  V  A  Y  M  E  P  F  T  L  D  V  F  I  S  K  R  F  I  S  A  S  I  T  H  R  V  T  C  K  Q  V  A  V  A  G  T  N  S  K  D  I  K  A  V  L  K  S  R  S  D  I  P  A  C  L  S  V  G  Q  I  L  S  D  R  A  R  E  A  D  V  Y  T  A  S  Y  T  P  R  D  R  D  K  F  E  G  K  I  R  A  V  V  Q  S  L  I  D  N  G  I  D  I  K  V  Y  L  D  *  K  K  V  L  C  L  P  V  V  S  K  H  I  K  S  S  *  S  N  E  P  L  L  Q  S  T  *  Y  F  L  *  S  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48074" stop="48076"/>
                    <exon start="48792" stop="48908"/>
                    <exon start="50966" stop="51418"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSFFYGNMLKLVSEMLCTRGGQKLRPYLCAQVSGFHTSKPALAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFISASITHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLSVGQILSDRAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDIKVYLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="60895" PGL_stop="70084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60895" e_stop="61259"/>
            <exon e_start="61697" e_stop="61831"/>
            <exon e_start="64467" e_stop="64566"/>
            <exon e_start="64674" e_stop="64799"/>
            <exon e_start="64952" e_stop="65265"/>
            <exon e_start="65868" e_stop="65987"/>
            <exon e_start="67914" e_stop="68159"/>
            <exon e_start="68244" e_stop="68369"/>
            <exon e_start="69807" e_stop="70084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.501" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60895" e_stop="61259" e_length="365"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="61260" i_stop="61696" i_length="437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61697" e_stop="61831" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.959">
            <gDNA_intron_boundary i_start="61832" i_stop="64466" i_length="2635"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64467" e_stop="64566" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.936">
            <gDNA_intron_boundary i_start="64567" i_stop="64673" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64674" e_stop="64799" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64800" i_stop="64951" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64952" e_stop="65265" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65266" i_stop="65867" i_length="602"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65868" e_stop="65987" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.984">
            <gDNA_intron_boundary i_start="65988" i_stop="67913" i_length="1926"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67914" e_stop="68159" e_length="246"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.501">
            <gDNA_intron_boundary i_start="68160" i_stop="68243" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68244" e_stop="68369" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="68370" i_stop="69806" i_length="1437"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="69807" e_stop="70084" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60895" stop="61259"/>
              <exon start="61697" stop="61831"/>
              <exon start="64467" stop="64566"/>
              <exon start="64674" stop="64799"/>
              <exon start="64952" stop="65265"/>
              <exon start="65868" stop="65987"/>
              <exon start="67914" stop="68159"/>
              <exon start="68244" stop="68369"/>
              <exon start="69807" stop="70084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCATTTGCTAGGAGGATTAGCTACACCTTTTCTCTGCAAACCCATTTCTGCTTCTTCTTCTTCCAATTACAGTTACACATCCGCTTCATCTTTTGATTCTCTCTACATCAAACGAGCAGCCGAATTAGCTGACAAATCGGCCGGATTTACCGCTCCTCATCCCAACTTCGGCTGCGTTATCGCTGTTCCAAATGGTAGAGCTACGGTGGTCGGAGAAGGTTACTTGTACGCCGAAGGGACTATTCCGGCGGAAGTGCAGGCTGTAGAAGCCGCTGGCGAGCAGTGTAGAGGTGCCACTGCTTATCTTAATATGGAACCTGGAGACTGTCACTGTGATACTAGTGCCGTTTCCGCCCTAATCAAG : GCAGGGATTAGTAGAGTTGTTGTTGGGATACGGCATCCGCTGCAACACCTTCGTGGCAATGCCATTCACGCATTGAGGAGTGAAGGTCTTCAAGTTGATGTGCTTGGGGAAGATACACAGAGTAAGACTATTGAG : GATGCTATCAAATCCTGCCTTCTTGTCAATGCTCCTTTACTATATAGAGCTGCCTGTCAAGTCCCATTCTCTGTTCTCAAGTATGCAATGACACTTGATG : GGAAAATTGCTGCTAGTTCTGGTCATGCTTCATGGATCAGTAGCAAAAAGTCAAGAACTCGAGTTTTTGAAATGCGGGGTAGAAGTGATGCTGTTATTGTTGGAGGAAATACTGTGCGCAAAGACA : ATCCACGTTTGACGGTTAGACATGGAGGTGACCATCTGCCCCGGCGTGTTGTATTATCTCAAACTCTTGACCTTCCAGAAGAAGCACATCTTTGGAATGTTTCTGAGGTCCCCACTATAGTTGCTACACAAAGAGGTGCAAAGAGAAGTTTCCAGAGATTGCTTGCATCCAAAGGCGTTGAAGTGGTGGAATTTGATATTTTAGATCCTAGAGATGTTATGGGGTACTTATATGATCGTGGTTATCTCTCTGTTTTGTGGGAGTGTGGAGGGACACTTGCTGCATCTGCTATTTCTTCTGGGGTCATACACAAA : GTACATGCATTTGTCGCTCCCAAAATTATAGGTGGGAAAAATGCACCGTCTCCAGTTGGGGAACTTGGAATGGTAGAGATGACCCAGGCTCTGGAACTAATTGATGTTTGCTATGAGCAG : ATTGGACCCGACATACTTGTTAGTGGGTTTCTGCAACCAGTTCCTGACTTGACACCTACTATTCCATCAGTACAAGAAACTTCAGCCATTGATCCTACCATTTCTCCTTATGAATCAAGCATCATTTTCTTTTACAAGACATGGGATCCATATGGTGCCTTCTCAAATTTTTCACTCCATCCAATTCAGATGCCTGATGAAAATGAAGAACTTGTCACCTGGTCCAGTGTAGAGCATTATTACCAG : GCACAAAAGTTTGTTGGGGTATCTGATCCTGTAGCTAAAAGCTGTATTGAAGAATTAAAATGTGCAAAGAGCCCCGAGGAAGCAGCACGGATTGGAAGGAGAATACAGAGGCAGCAACCTAATCTG : GTAAGACCAGACTGGGAATCTATCAAGATTGACGTCATGTACAAGGCCTTACATTGCAAGTTCACTACATACCCCTATTTAAACTCTTTGTTGCTCTCAACGGCGGGATCTGTTCTTGTGGAGGGTTCACCACATGATCTATTCTGGGGAGGAGGTCGAGACGGAGAAGGCCTTAACTATCTTGGACGATTGCTAATGAAGTTGAGATCTGAGCTCTTAGGTGAGTCTTCAACCAGTCAAAAATCTTTGCTTCCTCAAACTTCAGAAAATAATTAGTA</gDNA_template>
            <first_frame> R  I  C  *  E  D  *  L  H  L  F  S  A  N  P  F  L  L  L  L  L  P  I  T  V  T  H  P  L  H  L  L  I  L  S  T  S  N  E  Q  P  N  *  L  T  N  R  P  D  L  P  L  L  I  P  T  S  A  A  L  S  L  F  Q  M  V  E  L  R  W  S  E  K  V  T  C  T  P  K  G  L  F  R  R  K  C  R  L  *  K  P  L  A  S  S  V  E  V  P  L  L  I  L  I  W  N  L  E  T  V  T  V  I  L  V  P  F  P  P  *  S  R :   Q  G  L  V  E  L  L  L  G  Y  G  I  R  C  N  T  F  V  A  M  P  F  T  H  *  G  V  K  V  F  K  L  M  C  L  G  K  I  H  R  V  R  L  L  R :   M  L  S  N  P  A  F  L  S  M  L  L  Y  Y  I  E  L  P  V  K  S  H  S  L  F  S  S  M  Q  *  H  L  M  :  G  K  L  L  L  V  L  V  M  L  H  G  S  V  A  K  S  Q  E  L  E  F  L  K  C  G  V  E  V  M  L  L  L  L  E  E  I  L  C  A  K  T  :  I  H  V  *  R  L  D  M  E  V  T  I  C  P  G  V  L  Y  Y  L  K  L  L  T  F  Q  K  K  H  I  F  G  M  F  L  R  S  P  L  *  L  L  H  K  E  V  Q  R  E  V  S  R  D  C  L  H  P  K  A  L  K  W  W  N  L  I  F  *  I  L  E  M  L  W  G  T  Y  M  I  V  V  I  S  L  F  C  G  S  V  E  G  H  L  L  H  L  L  F  L  L  G  S  Y  T  K :   Y  M  H  L  S  L  P  K  L  *  V  G  K  M  H  R  L  Q  L  G  N  L  E  W  *  R  *  P  R  L  W  N  *  L  M  F  A  M  S  R :   L  D  P  T  Y  L  L  V  G  F  C  N  Q  F  L  T  *  H  L  L  F  H  Q  Y  K  K  L  Q  P  L  I  L  P  F  L  L  M  N  Q  A  S  F  S  F  T  R  H  G  I  H  M  V  P  S  Q  I  F  H  S  I  Q  F  R  C  L  M  K  M  K  N  L  S  P  G  P  V  *  S  I  I  T  R :   H  K  S  L  L  G  Y  L  I  L  *  L  K  A  V  L  K  N  *  N  V  Q  R  A  P  R  K  Q  H  G  L  E  G  E  Y  R  G  S  N  L  I  W :   *  D  Q  T  G  N  L  S  R  L  T  S  C  T  R  P  Y  I  A  S  S  L  H  T  P  I  *  T  L  C  C  S  Q  R  R  D  L  F  L  W  R  V  H  H  M  I  Y  S  G  E  E  V  E  T  E  K  A  L  T  I  L  D  D  C  *  *  S  *  D  L  S  S  *  V  S  L  Q  P  V  K  N  L  C  F  L  K  L  Q  K  I  I  S  </first_frame>
            <second_frame>  A  F  A  R  R  I  S  Y  T  F  S  L  Q  T  H  F  C  F  F  F  F  Q  L  Q  L  H  I  R  F  I  F  *  F  S  L  H  Q  T  S  S  R  I  S  *  Q  I  G  R  I  Y  R  S  S  S  Q  L  R  L  R  Y  R  C  S  K  W  *  S  Y  G  G  R  R  R  L  L  V  R  R  R  D  Y  S  G  G  S  A  G  C  R  S  R  W  R  A  V  *  R  C  H  C  L  S  *  Y  G  T  W  R  L  S  L  *  Y  *  C  R  F  R  P  N  Q   : G  R  D  *  *  S  C  C  W  D  T  A  S  A  A  T  P  S  W  Q  C  H  S  R  I  E  E  *  R  S  S  S  *  C  A  W  G  R  Y  T  E  *  D  Y  *   : G  C  Y  Q  I  L  P  S  C  Q  C  S  F  T  I  *  S  C  L  S  S  P  I  L  C  S  Q  V  C  N  D  T  *  W :   E  N  C  C  *  F  W  S  C  F  M  D  Q  *  Q  K  V  K  N  S  S  F  *  N  A  G  *  K  *  C  C  Y  C  W  R  K  Y  C  A  Q  R  Q :   S  T  F  D  G  *  T  W  R  *  P  S  A  P  A  C  C  I  I  S  N  S  *  P  S  R  R  S  T  S  L  E  C  F  *  G  P  H  Y  S  C  Y  T  K  R  C  K  E  K  F  P  E  I  A  C  I  Q  R  R  *  S  G  G  I  *  Y  F  R  S  *  R  C  Y  G  V  L  I  *  S  W  L  S  L  C  F  V  G  V  W  R  D  T  C  C  I  C  Y  F  F  W  G  H  T  Q   : S  T  C  I  C  R  S  Q  N  Y  R  W  E  K  C  T  V  S  S  W  G  T  W  N  G  R  D  D  P  G  S  G  T  N  *  C  L  L  *  A   : D  W  T  R  H  T  C  *  W  V  S  A  T  S  S  *  L  D  T  Y  Y  S  I  S  T  R  N  F  S  H  *  S  Y  H  F  S  L  *  I  K  H  H  F  L  L  Q  D  M  G  S  I  W  C  L  L  K  F  F  T  P  S  N  S  D  A  *  *  K  *  R  T  C  H  L  V  Q  C  R  A  L  L  P   : G  T  K  V  C  W  G  I  *  S  C  S  *  K  L  Y  *  R  I  K  M  C  K  E  P  R  G  S  S  T  D  W  K  E  N  T  E  A  A  T  *  S   : G  K  T  R  L  G  I  Y  Q  D  *  R  H  V  Q  G  L  T  L  Q  V  H  Y  I  P  L  F  K  L  F  V  A  L  N  G  G  I  C  S  C  G  G  F  T  T  *  S  I  L  G  R  R  S  R  R  R  R  P  *  L  S  W  T  I  A  N  E  V  E  I  *  A  L  R  *  V  F  N  Q  S  K  I  F  A  S  S  N  F  R  K  *  L  V </second_frame>
            <third_frame>   H  L  L  G  G  L  A  T  P  F  L  C  K  P  I  S  A  S  S  S  S  N  Y  S  Y  T  S  A  S  S  F  D  S  L  Y  I  K  R  A  A  E  L  A  D  K  S  A  G  F  T  A  P  H  P  N  F  G  C  V  I  A  V  P  N  G  R  A  T  V  V  G  E  G  Y  L  Y  A  E  G  T  I  P  A  E  V  Q  A  V  E  A  A  G  E  Q  C  R  G  A  T  A  Y  L  N  M  E  P  G  D  C  H  C  D  T  S  A  V  S  A  L  I  K  :  A  G  I  S  R  V  V  V  G  I  R  H  P  L  Q  H  L  R  G  N  A  I  H  A  L  R  S  E  G  L  Q  V  D  V  L  G  E  D  T  Q  S  K  T  I  E  :  D  A  I  K  S  C  L  L  V  N  A  P  L  L  Y  R  A  A  C  Q  V  P  F  S  V  L  K  Y  A  M  T  L  D   : G  K  I  A  A  S  S  G  H  A  S  W  I  S  S  K  K  S  R  T  R  V  F  E  M  R  G  R  S  D  A  V  I  V  G  G  N  T  V  R  K  D   : N  P  R  L  T  V  R  H  G  G  D  H  L  P  R  R  V  V  L  S  Q  T  L  D  L  P  E  E  A  H  L  W  N  V  S  E  V  P  T  I  V  A  T  Q  R  G  A  K  R  S  F  Q  R  L  L  A  S  K  G  V  E  V  V  E  F  D  I  L  D  P  R  D  V  M  G  Y  L  Y  D  R  G  Y  L  S  V  L  W  E  C  G  G  T  L  A  A  S  A  I  S  S  G  V  I  H  K  :  V  H  A  F  V  A  P  K  I  I  G  G  K  N  A  P  S  P  V  G  E  L  G  M  V  E  M  T  Q  A  L  E  L  I  D  V  C  Y  E  Q  :  I  G  P  D  I  L  V  S  G  F  L  Q  P  V  P  D  L  T  P  T  I  P  S  V  Q  E  T  S  A  I  D  P  T  I  S  P  Y  E  S  S  I  I  F  F  Y  K  T  W  D  P  Y  G  A  F  S  N  F  S  L  H  P  I  Q  M  P  D  E  N  E  E  L  V  T  W  S  S  V  E  H  Y  Y  Q  :  A  Q  K  F  V  G  V  S  D  P  V  A  K  S  C  I  E  E  L  K  C  A  K  S  P  E  E  A  A  R  I  G  R  R  I  Q  R  Q  Q  P  N  L  :  V  R  P  D  W  E  S  I  K  I  D  V  M  Y  K  A  L  H  C  K  F  T  T  Y  P  Y  L  N  S  L  L  L  S  T  A  G  S  V  L  V  E  G  S  P  H  D  L  F  W  G  G  G  R  D  G  E  G  L  N  Y  L  G  R  L  L  M  K  L  R  S  E  L  L  G  E  S  S  T  S  Q  K  S  L  L  P  Q  T  S  E  N  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60897" stop="61259"/>
                    <exon start="61697" stop="61831"/>
                    <exon start="64467" stop="64566"/>
                    <exon start="64674" stop="64799"/>
                    <exon start="64952" stop="65265"/>
                    <exon start="65868" stop="65987"/>
                    <exon start="67914" stop="68159"/>
                    <exon start="68244" stop="68369"/>
                    <exon start="69807" stop="70082"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1803</number_coding_nucleotides>
                  <number_encoded_amino_acids>601</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLLGGLATPFLCKPISASSSSNYSYTSASSFDSLYIKRAAELADKSAGFTAPHPNFGCVIAVPNGRATVVGEGYLYAEGTIPAEVQAVEAAGEQCRGATAYLNMEPGDCHCDTSAVSALIKAGISRVVVGIRHPLQHLRGNAIHALRSEGLQVDVLGEDTQSKTIEDAIKSCLLVNAPLLYRAACQVPFSVLKYAMTLDGKIAASSGHASWISSKKSRTRVFEMRGRSDAVIVGGNTVRKDNPRLTVRHGGDHLPRRVVLSQTLDLPEEAHLWNVSEVPTIVATQRGAKRSFQRLLASKGVEVVEFDILDPRDVMGYLYDRGYLSVLWECGGTLAASAISSGVIHKVHAFVAPKIIGGKNAPSPVGELGMVEMTQALELIDVCYEQIGPDILVSGFLQPVPDLTPTIPSVQETSAIDPTISPYESSIIFFYKTWDPYGAFSNFSLHPIQMPDENEELVTWSSVEHYYQAQKFVGVSDPVAKSCIEELKCAKSPEEAARIGRRIQRQQPNLVRPDWESIKIDVMYKALHCKFTTYPYLNSLLLSTAGSVLVEGSPHDLFWGGGRDGEGLNYLGRLLMKLRSELLGESSTSQKSLLPQTSENN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66645" e_stop="67402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="66645" e_stop="67402" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66645" stop="67402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCGGTTTTTCACCTTTCCTAAGAAGATGAGTCACTCCTATAGTCCTTTTAGGTTTCTGAGTTCTAGCAAACAAAGAAATTTGTATAAGTTTTCATGTTGATGGAAGACTCTGCATGCGGGAGCTTGACAAAGCAGAACGATATCAAACTCAAATAAAGCAGAAGGCTGGAGTAGGTTAATGGCTAGTCTGACGTAGTCTAAGGTTTAATGAATCCTTTGAACTGAATAGGCACAATGTACTCAAAGGATTCATGTAGCCAACCTTAACTAATTTGTGATTGAGGCATAGAAGATTATTTATGTCAAATTCTTACCTTGAAGGGAACTTTAGCTTTCAAAATGGAAGAAGCTAAAGAAAAAGTAGTCAGAATTTCTGCATTCCTTAAAAGGATAAATAGGAATTGCAGGACAAATTACTTATTCCCGTGTTGCTTCTATCTCTTTCAAGTAAATACAATAAAAATTGCTTGAGTGAGAAGTCAGTTAGATTCCTCATTCAGTATCCATGTGCCCAATGCTTGCATTCCAATTACACTATCTTTCTTTCTCTGTTTTCCCTTCATATGATATTGCTCACATTCATCTCTTGTTAGTGCATATGCTCAAGTTAAAGGATTTTGTTTAGGTGTTTCCAGGCGTAAACTTCCGCAATCTATCTGTCATTCCAAATCCCTAAACTCTTTTTAGTTACTGTTGGTCTGCTAATAAGTCTGTTTAATGAGGGTCACACATTGCAGATGTAGGAACTGGGTCG</gDNA_template>
            <first_frame> K  S  G  F  S  P  F  L  R  R  *  V  T  P  I  V  L  L  G  F  *  V  L  A  N  K  E  I  C  I  S  F  H  V  D  G  R  L  C  M  R  E  L  D  K  A  E  R  Y  Q  T  Q  I  K  Q  K  A  G  V  G  *  W  L  V  *  R  S  L  R  F  N  E  S  F  E  L  N  R  H  N  V  L  K  G  F  M  *  P  T  L  T  N  L  *  L  R  H  R  R  L  F  M  S  N  S  Y  L  E  G  N  F  S  F  Q  N  G  R  S  *  R  K  S  S  Q  N  F  C  I  P  *  K  D  K  *  E  L  Q  D  K  L  L  I  P  V  L  L  L  S  L  S  S  K  Y  N  K  N  C  L  S  E  K  S  V  R  F  L  I  Q  Y  P  C  A  Q  C  L  H  S  N  Y  T  I  F  L  S  L  F  S  L  H  M  I  L  L  T  F  I  S  C  *  C  I  C  S  S  *  R  I  L  F  R  C  F  Q  A  *  T  S  A  I  Y  L  S  F  Q  I  P  K  L  F  L  V  T  V  G  L  L  I  S  L  F  N  E  G  H  T  L  Q  M  *  E  L  G   </first_frame>
            <second_frame>  K  A  V  F  H  L  S  *  E  D  E  S  L  L  *  S  F  *  V  S  E  F  *  Q  T  K  K  F  V  *  V  F  M  L  M  E  D  S  A  C  G  S  L  T  K  Q  N  D  I  K  L  K  *  S  R  R  L  E  *  V  N  G  *  S  D  V  V  *  G  L  M  N  P  L  N  *  I  G  T  M  Y  S  K  D  S  C  S  Q  P  *  L  I  C  D  *  G  I  E  D  Y  L  C  Q  I  L  T  L  K  G  T  L  A  F  K  M  E  E  A  K  E  K  V  V  R  I  S  A  F  L  K  R  I  N  R  N  C  R  T  N  Y  L  F  P  C  C  F  Y  L  F  Q  V  N  T  I  K  I  A  *  V  R  S  Q  L  D  S  S  F  S  I  H  V  P  N  A  C  I  P  I  T  L  S  F  F  L  C  F  P  F  I  *  Y  C  S  H  S  S  L  V  S  A  Y  A  Q  V  K  G  F  C  L  G  V  S  R  R  K  L  P  Q  S  I  C  H  S  K  S  L  N  S  F  *  L  L  L  V  C  *  *  V  C  L  M  R  V  T  H  C  R  C  R  N  W  V  </second_frame>
            <third_frame>   K  R  F  F  T  F  P  K  K  M  S  H  S  Y  S  P  F  R  F  L  S  S  S  K  Q  R  N  L  Y  K  F  S  C  *  W  K  T  L  H  A  G  A  *  Q  S  R  T  I  S  N  S  N  K  A  E  G  W  S  R  L  M  A  S  L  T  *  S  K  V  *  *  I  L  *  T  E  *  A  Q  C  T  Q  R  I  H  V  A  N  L  N  *  F  V  I  E  A  *  K  I  I  Y  V  K  F  L  P  *  R  E  L  *  L  S  K  W  K  K  L  K  K  K  *  S  E  F  L  H  S  L  K  G  *  I  G  I  A  G  Q  I  T  Y  S  R  V  A  S  I  S  F  K  *  I  Q  *  K  L  L  E  *  E  V  S  *  I  P  H  S  V  S  M  C  P  M  L  A  F  Q  L  H  Y  L  S  F  S  V  F  P  S  Y  D  I  A  H  I  H  L  L  L  V  H  M  L  K  L  K  D  F  V  *  V  F  P  G  V  N  F  R  N  L  S  V  I  P  N  P  *  T  L  F  S  Y  C  W  S  A  N  K  S  V  *  *  G  S  H  I  A  D  V  G  T  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67047" stop="67241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELQDKLLIPVLLLSLSSKYNKNCLSEKSVRFLIQYPCAQCLHSNYTIFLSLFSLHMILLTFISC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="82035" PGL_stop="73291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82035" e_stop="81477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="82035" e_stop="81477" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82035" stop="81477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTAATCAATCACAAGTTCCGCAGAAAGGCAATCAGAAGACCAGCAAAATACCATATCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTAATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGAATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACCATGA</gDNA_template>
            <first_frame> Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  H  I  L  N  K  N  T  S  T  N  Y  I  S  A  I  T  S  S  I  L  I  N  H  K  F  R  R  K  A  I  R  R  P  A  K  Y  H  I  K  F  T  N  D  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  N  L  S  R  R  T  T  R  P  S  I  I  V  T  I  T  A  R  D  T  S  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  E  *  C  R  *  Q  V  H  T  Y  N  E  E  M  T  I  S  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  </first_frame>
            <second_frame>  K  L  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  T  R  I  L  Q  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  T  S  S  A  E  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  M  I  S  M  C  N  A  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  *  I  C  R  G  A  R  H  D  P  R  *  *  *  P  S  R  R  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  Q  N  N  A  D  D  K  F  T  H  I  M  R  R  *  P  F  P  *  H  H  T  V  H  N  H  T  N  M  K  L  H  Q  P  * </second_frame>
            <third_frame>   N  Y  I  S  S  T  T  T  L  Q  Q  I  T  Y  P  Q  Q  E  Y  F  N  K  L  H  I  R  N  N  K  L  N  I  N  Q  S  Q  V  P  Q  K  G  N  Q  K  T  S  K  I  P  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  N  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  E  S  V  A  A  H  D  T  T  L  D  N  S  N  H  H  G  A  R  Y  V  P  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  R  I  M  Q  M  T  S  S  H  I  *  *  G  D  D  H  F  H  N  I  T  Q  F  T  T  T  Q  T  *  S  Y  I  N  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81814" stop="81548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSNTHPLSLSPGPMGDISVHESVAAHDTTLDNSNHHGARYVPRNIVSIAARDTSLEMVHPLKYPFFLNAHNTCHNQCLRIMQMTSSHI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82035" stop="81829"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYPQQQHFNKLHILNKNTSTNYISAITSSILINHKFRRKAIRRPAKYHIKFTNDKYVQCNGMQCQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78268" e_stop="77932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="78268" e_stop="77932" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78268" stop="77932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATATCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCTATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  I  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  P  Y  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  N  S  L  V  S  V  R  D  T  P  I  P  H  I  H  Y  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  S  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  P  I  P  Y  S  F  G  N  H  V  R  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  I  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  I  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  L  Y  H  T  H  L  G  I  M  F  V  R  L  S  I  L  T  S  F  K  I  H  Y  L  *  F  S  C  V  G  T  *  H  S  D  P  S  Y  S  L  F  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0078E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81976" e_stop="81668"/>
            <exon e_start="73671" e_stop="73291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.181" acc_prob="0.000" e_score="0.903"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="81976" e_stop="81668" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.181" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81667" i_stop="73672" i_length="7996"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="73671" e_stop="73291" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81976" stop="81668"/>
              <exon start="73671" stop="73291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328762" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACAAATTACATATCCGCAATAACAAGCTCAATATTAATCAATCACAAGTTCCGCAGAAAGGCAATCAGAAGACCAGCAAAATACCATATCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTAATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGAATCTGTCGCGGCGCACGACACGACCCTCGATAATAGTAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCG : GCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACCATGATTCAACAAGCCTTCAACCCTTTCTCAACACAACAAACATAATCAATTAATCACATTGCCTTTTTTTATCCCCATTATTTTCATCACTAGAATTAATCAATGTGGATAAGTCAACCCATCACCAATCCCGTTACTCCCAACATATACCACAAG</gDNA_template>
            <first_frame> F  N  K  L  H  I  R  N  N  K  L  N  I  N  Q  S  Q  V  P  Q  K  G  N  Q  K  T  S  K  I  P  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  N  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  E  S  V  A  A  H  D  T  T  L  D  N  S  N  H  H  G  A  R  Y  V  P  R  N  I  V  S  I  A  :  A  R  D  T  S  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  E  *  C  R  *  Q  V  H  T  Y  N  E  E  M  T  I  S  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  I  Q  Q  A  F  N  P  F  S  T  Q  Q  T  *  S  I  N  H  I  A  F  F  Y  P  H  Y  F  H  H  *  N  *  S  M  W  I  S  Q  P  I  T  N  P  V  T  P  N  I  Y  H  K </first_frame>
            <second_frame>  S  T  N  Y  I  S  A  I  T  S  S  I  L  I  N  H  K  F  R  R  K  A  I  R  R  P  A  K  Y  H  I  K  F  T  N  D  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  N  L  S  R  R  T  T  R  P  S  I  I  V  T  I  T  A  R  D  T  S  L  E  I  *  Y  P  S  R :   R  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  Q  N  N  A  D  D  K  F  T  H  I  M  R  R  *  P  F  P  *  H  H  T  V  H  N  H  T  N  M  K  L  H  Q  P  *  F  N  K  P  S  T  L  S  Q  H  N  K  H  N  Q  L  I  T  L  P  F  F  I  P  I  I  F  I  T  R  I  N  Q  C  G  *  V  N  P  S  P  I  P  L  L  P  T  Y  T  T   </second_frame>
            <third_frame>   Q  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  T  S  S  A  E  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  M  I  S  M  C  N  A  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  *  I  C  R  G  A  R  H  D  P  R  *  *  *  P  S  R  R  A  I  R  P  S  K  Y  S  I  H  R   : G  A  R  Y  V  P  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  R  I  M  Q  M  T  S  S  H  I  *  *  G  D  D  H  F  H  N  I  T  Q  F  T  T  T  Q  T  *  S  Y  I  N  H  D  S  T  S  L  Q  P  F  L  N  T  T  N  I  I  N  *  S  H  C  L  F  L  S  P  L  F  S  S  L  E  L  I  N  V  D  K  S  T  H  H  Q  S  R  Y  S  Q  H  I  P  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81713" stop="81668"/>
                    <exon start="73671" stop="73514"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSRRAIRPSKYSIHRGARYVPRNIVSIAARDTSLEMVHPLKYPFFLNAHNTCHNQCLRIMQMTSSHI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="100193" PGL_stop="107319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100193" e_stop="100386"/>
            <exon e_start="101536" e_stop="101925"/>
            <exon e_start="102015" e_stop="102132"/>
            <exon e_start="105939" e_stop="106162"/>
            <exon e_start="106293" e_stop="107084"/>
            <exon e_start="107274" e_stop="107319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.518" acc_prob="0.990" e_score="0.995"/>
          <exon-intron don_prob="0.911" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.833" e_score="0.990"/>
          <exon-only e_score="0.435"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100193" e_stop="100386" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="100387" i_stop="101535" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="101536" e_stop="101925" e_length="390"/>
          </exon>
          <intron i_serial="2" don_prob="0.518" acc_prob="0.990">
            <gDNA_intron_boundary i_start="101926" i_stop="102014" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102015" e_stop="102132" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.984">
            <gDNA_intron_boundary i_start="102133" i_stop="105938" i_length="3806"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105939" e_stop="106162" e_length="224"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106163" i_stop="106292" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="106293" e_stop="107084" e_length="792"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.833">
            <gDNA_intron_boundary i_start="107085" i_stop="107273" i_length="189"/>
          </intron>
          <exon e_serial="6" e_score="0.435">
            <gDNA_exon_boundary e_start="107274" e_stop="107319" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100193" stop="100386"/>
              <exon start="101536" stop="101925"/>
              <exon start="102015" stop="102132"/>
              <exon start="105939" stop="106162"/>
              <exon start="106293" stop="107084"/>
              <exon start="107274" stop="107319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100193" stop="100386"/>
              <exon start="101536" stop="101734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTGCTGTTGGAGTTAAGAAGAAGAAGAGTAGGAGGGTATCTAGGAATTCTTCCTTCAACAAATGCAAGGAAGAACAGCTGCGTAAGACTCCTGGACGATTGTTCTTGAATGGATCGAGCGAGGCAGCTTCACTCTTCACTCAGCAAGGCAAGAAAGGAACGAATCAAGATGCCATGGTTGTTTGGGAG : AACTTCGCTTCCAGAACAGATACTGTATTCTGTGGTGTTTTTGATGGCCACGGTCCTCATGGCCATATGGTTGCCAAGCGAGTCAGAGATTCCCTTCCCTCGAAGCTAAGTGCACATTGGGAAGTTAGTCTGAAAAGTGAGGATGTCCTAAAGGAGATCAGTCTAAATGCTGGGGCTAGCCTATATCCCGAGGATGCTTCCCTTATATCCGCGGCCGATGACTCTAGGGTTTCAATTGATGTTGAAGAGACTGGAAAGCACCCAGAGATCTTTCAGACTTTGAAGGAATCATTTTTGAAGGCTTATAAGGTTATGGACAGGGAACTGAAAAGCTACACTAATATTGACTGCTTCTGTAGTGGGACAACAGCTGTAACCCTTATTAAACAG : GGCCAGGATCTTGTTATAGGAAATGTAGGCGACTCCCGAGCAATTCTAGGTACCAGAGACAAAGATGGTTCTCTAACTGCTGTACAATTGACAGTGGATCTGAAGCCTAATCTACCAG : CGGAGGCTGAAAGAATTCGTAAATGTAGAGGGCGTGTTTTTTCTCTTCATGATGAACCAGAGGTTGCAAGAGTGTGGTTGCCAAATAGTGACTCTCCTGGACTTGCCATGGCACGTGCTTTTGGAGATTTTTGCCTGAAGGATTTTGGTCTCATCTCTGTACCCGAAATATCATATAGGCGTTTAACAGGAAAAGATGAGTTCATTGTTCTGGCAACTGATGGG : ATATGGGATGTACTTACAAATGATGAAGTTGTAAAGATTGTTGCATCTGCTTCATCCCGTTCGTCTGCAGCTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAAAATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTGCCTTTTTCTTGATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGACAAGACTGTCTCAATGAAAGCAAATGAAGTTGGTGCCAAGACAGGTGATGCCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAAGTTTCAGAAGAAGAGATAGAGGAAGCATCAGAACATGAGGAACTGCTCTCAGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACACATTATTGACACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACTGTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTGGATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTTTAAGGTCTCACATATCTATCTACTGGGAGGGAAAAAAAATAGGGGCATTTTATATTTGTTGTAGACTGGAGAGGTGGCCCCAGCTATATTAGAGTGTCTGGGAATCATCCATTCTCTTCCTAGTGTTGGTAAAAGTGGAATTTTTGTAAAAACCAACTCTCCTGTCTTGGTTGCTAGCTTTCTTTTCTTTCGCATATATACCAAGATTGTGTGTACCTTATCAAAGAGAT : CCAGGCATGCATATAAAGCAGAGAGAACACACCTCATCTGGAAATC</gDNA_template>
            <first_frame> L  H  L  L  L  E  L  R  R  R  R  V  G  G  Y  L  G  I  L  P  S  T  N  A  R  K  N  S  C  V  R  L  L  D  D  C  S  *  M  D  R  A  R  Q  L  H  S  S  L  S  K  A  R  K  E  R  I  K  M  P  W  L  F  G  R :   T  S  L  P  E  Q  I  L  Y  S  V  V  F  L  M  A  T  V  L  M  A  I  W  L  P  S  E  S  E  I  P  F  P  R  S  *  V  H  I  G  K  L  V  *  K  V  R  M  S  *  R  R  S  V  *  M  L  G  L  A  Y  I  P  R  M  L  P  L  Y  P  R  P  M  T  L  G  F  Q  L  M  L  K  R  L  E  S  T  Q  R  S  F  R  L  *  R  N  H  F  *  R  L  I  R  L  W  T  G  N  *  K  A  T  L  I  L  T  A  S  V  V  G  Q  Q  L  *  P  L  L  N  R :   A  R  I  L  L  *  E  M  *  A  T  P  E  Q  F  *  V  P  E  T  K  M  V  L  *  L  L  Y  N  *  Q  W  I  *  S  L  I  Y  Q  :  R  R  L  K  E  F  V  N  V  E  G  V  F  F  L  F  M  M  N  Q  R  L  Q  E  C  G  C  Q  I  V  T  L  L  D  L  P  W  H  V  L  L  E  I  F  A  *  R  I  L  V  S  S  L  Y  P  K  Y  H  I  G  V  *  Q  E  K  M  S  S  L  F  W  Q  L  M  G :   Y  G  M  Y  L  Q  M  M  K  L  *  R  L  L  H  L  L  H  P  V  R  L  Q  L  D  R  *  L  N  Q  L  F  E  P  G  G  Q  N  T  L  L  L  K  L  M  I  V  Q  L  F  A  F  F  L  I  Q  T  Q  T  T  C  P  L  L  P  I  Q  K  T  V  T  R  L  S  Q  *  K  Q  M  K  L  V  P  R  Q  V  M  P  Q  V  Q  L  H  L  L  V  L  E  L  F  E  K  L  K  F  Q  K  K  R  *  R  K  H  Q  N  M  R  N  C  S  Q  R  W  G  R  N  G  L  H  W  K  G  F  P  G  *  T  H  Y  *  H  C  Q  G  L  C  L  T  R  T  R  I  K  L  S  G  I  E  L  K  E  A  T  E  G  E  I  S  K  F  G  F  I  S  F  G  Y  F  S  I  F  I  *  F  H  P  F  *  G  L  T  Y  L  S  T  G  R  E  K  K  *  G  H  F  I  F  V  V  D  W  R  G  G  P  S  Y  I  R  V  S  G  N  H  P  F  S  S  *  C  W  *  K  W  N  F  C  K  N  Q  L  S  C  L  G  C  *  L  S  F  L  S  H  I  Y  Q  D  C  V  Y  L  I  K  E  I :   Q  A  C  I  *  S  R  E  N  T  P  H  L  E  I </first_frame>
            <second_frame>  Y  I  C  C  W  S  *  E  E  E  E  *  E  G  I  *  E  F  F  L  Q  Q  M  Q  G  R  T  A  A  *  D  S  W  T  I  V  L  E  W  I  E  R  G  S  F  T  L  H  S  A  R  Q  E  R  N  E  S  R  C  H  G  C  L  G   : E  L  R  F  Q  N  R  Y  C  I  L  W  C  F  *  W  P  R  S  S  W  P  Y  G  C  Q  A  S  Q  R  F  P  S  L  E  A  K  C  T  L  G  S  *  S  E  K  *  G  C  P  K  G  D  Q  S  K  C  W  G  *  P  I  S  R  G  C  F  P  Y  I  R  G  R  *  L  *  G  F  N  *  C  *  R  D  W  K  A  P  R  D  L  S  D  F  E  G  I  I  F  E  G  L  *  G  Y  G  Q  G  T  E  K  L  H  *  Y  *  L  L  L  *  W  D  N  S  C  N  P  Y  *  T   : G  P  G  S  C  Y  R  K  C  R  R  L  P  S  N  S  R  Y  Q  R  Q  R  W  F  S  N  C  C  T  I  D  S  G  S  E  A  *  S  T  S :   G  G  *  K  N  S  *  M  *  R  A  C  F  F  S  S  *  *  T  R  G  C  K  S  V  V  A  K  *  *  L  S  W  T  C  H  G  T  C  F  W  R  F  L  P  E  G  F  W  S  H  L  C  T  R  N  I  I  *  A  F  N  R  K  R  *  V  H  C  S  G  N  *  W   : D  M  G  C  T  Y  K  *  *  S  C  K  D  C  C  I  C  F  I  P  F  V  C  S  S  I  A  S  *  I  S  C  S  S  L  E  D  K  I  P  Y  F  *  S  *  *  L  C  S  C  L  P  F  S  *  F  K  L  K  Q  L  V  H  C  F  Q  Y  R  R  Q  *  Q  D  C  L  N  E  S  K  *  S  W  C  Q  D  R  *  C  L  R  S  N  C  I  Y  S  F  W  N  C  S  R  S  *  S  F  R  R  R  D  R  G  S  I  R  T  *  G  T  A  L  R  G  G  G  G  M  V  C  T  G  R  G  F  P  A  E  H  I  I  D  T  A  K  V  C  A  *  Q  G  R  E  L  N  C  L  E  S  N  S  K  K  Q  Q  R  V  R  F  P  S  L  D  L  F  L  S  V  I  F  Q  F  L  F  S  S  I  H  F  K  V  S  H  I  Y  L  L  G  G  K  K  N  R  G  I  L  Y  L  L  *  T  G  E  V  A  P  A  I  L  E  C  L  G  I  I  H  S  L  P  S  V  G  K  S  G  I  F  V  K  T  N  S  P  V  L  V  A  S  F  L  F  F  R  I  Y  T  K  I  V  C  T  L  S  K  R   : S  R  H  A  Y  K  A  E  R  T  H  L  I  W  K   </second_frame>
            <third_frame>   T  S  A  V  G  V  K  K  K  K  S  R  R  V  S  R  N  S  S  F  N  K  C  K  E  E  Q  L  R  K  T  P  G  R  L  F  L  N  G  S  S  E  A  A  S  L  F  T  Q  Q  G  K  K  G  T  N  Q  D  A  M  V  V  W  E  :  N  F  A  S  R  T  D  T  V  F  C  G  V  F  D  G  H  G  P  H  G  H  M  V  A  K  R  V  R  D  S  L  P  S  K  L  S  A  H  W  E  V  S  L  K  S  E  D  V  L  K  E  I  S  L  N  A  G  A  S  L  Y  P  E  D  A  S  L  I  S  A  A  D  D  S  R  V  S  I  D  V  E  E  T  G  K  H  P  E  I  F  Q  T  L  K  E  S  F  L  K  A  Y  K  V  M  D  R  E  L  K  S  Y  T  N  I  D  C  F  C  S  G  T  T  A  V  T  L  I  K  Q  :  G  Q  D  L  V  I  G  N  V  G  D  S  R  A  I  L  G  T  R  D  K  D  G  S  L  T  A  V  Q  L  T  V  D  L  K  P  N  L  P   : A  E  A  E  R  I  R  K  C  R  G  R  V  F  S  L  H  D  E  P  E  V  A  R  V  W  L  P  N  S  D  S  P  G  L  A  M  A  R  A  F  G  D  F  C  L  K  D  F  G  L  I  S  V  P  E  I  S  Y  R  R  L  T  G  K  D  E  F  I  V  L  A  T  D  G  :  I  W  D  V  L  T  N  D  E  V  V  K  I  V  A  S  A  S  S  R  S  S  A  A  R  S  L  V  E  S  A  V  R  A  W  R  T  K  Y  P  T  S  K  V  D  D  C  A  V  V  C  L  F  L  D  S  N  S  N  N  L  S  T  A  S  N  T  E  D  S  D  K  T  V  S  M  K  A  N  E  V  G  A  K  T  G  D  A  S  G  P  T  A  F  T  R  S  G  T  V  R  E  V  E  V  S  E  E  E  I  E  E  A  S  E  H  E  E  L  L  S  E  V  G  A  E  W  S  A  L  E  G  V  S  R  L  N  T  L  L  T  L  P  R  F  V  P  D  K  D  E  N  *  T  V  W  N  R  T  Q  R  S  N  R  G  *  D  F  Q  V  W  I  Y  F  F  R  L  F  F  N  F  Y  L  V  P  S  I  L  R  S  H  I  S  I  Y  W  E  G  K  K  I  G  A  F  Y  I  C  C  R  L  E  R  W  P  Q  L  Y  *  S  V  W  E  S  S  I  L  F  L  V  L  V  K  V  E  F  L  *  K  P  T  L  L  S  W  L  L  A  F  F  S  F  A  Y  I  P  R  L  C  V  P  Y  Q  R  D  :  P  G  M  H  I  K  Q  R  E  H  T  S  S  G  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100195" stop="100386"/>
                    <exon start="101536" stop="101925"/>
                    <exon start="102015" stop="102132"/>
                    <exon start="105939" stop="106162"/>
                    <exon start="106293" stop="106751"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSAVGVKKKKSRRVSRNSSFNKCKEEQLRKTPGRLFLNGSSEAASLFTQQGKKGTNQDAMVVWENFASRTDTVFCGVFDGHGPHGHMVAKRVRDSLPSKLSAHWEVSLKSEDVLKEISLNAGASLYPEDASLISAADDSRVSIDVEETGKHPEIFQTLKESFLKAYKVMDRELKSYTNIDCFCSGTTAVTLIKQGQDLVIGNVGDSRAILGTRDKDGSLTAVQLTVDLKPNLPAEAERIRKCRGRVFSLHDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPEISYRRLTGKDEFIVLATDGIWDVLTNDEVVKIVASASSRSSAARSLVESAVRAWRTKYPTSKVDDCAVVCLFLDSNSNNLSTASNTEDSDKTVSMKANEVGAKTGDASGPTAFTRSGTVREVEVSEEEIEEASEHEELLSEVGAEWSALEGVSRLNTLLTLPRFVPDKDEN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106919" stop="107084"/>
                    <exon start="107274" stop="107317"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGEVAPAILECLGIIHSLPSVGKSGIFVKTNSPVLVASFLFFRIYTKIVCTLSKRSRHAYKAERTHLIWK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="112683" PGL_stop="115114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112683" e_stop="112835"/>
            <exon e_start="112940" e_stop="113148"/>
            <exon e_start="113369" e_stop="113449"/>
            <exon e_start="113953" e_stop="114303"/>
            <exon e_start="114959" e_stop="115114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="112683" e_stop="112835" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112836" i_stop="112939" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112940" e_stop="113148" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113149" i_stop="113368" i_length="220"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113369" e_stop="113449" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="113450" i_stop="113952" i_length="503"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="113953" e_stop="114303" e_length="351"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114304" i_stop="114958" i_length="655"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="114959" e_stop="115114" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112683" stop="112835"/>
              <exon start="112940" stop="113148"/>
              <exon start="113369" stop="113449"/>
              <exon start="113953" stop="114303"/>
              <exon start="114959" stop="115114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTAGTAATCATGAAGAAACAAACAATATGACCATTTCTTCTCTTCTTCTTCCTCCTCCTCCTCCTCCTTTCATCAATTACAATAATAATAATAATAATATTTATGGAAAGTCTATTTCCATTCATCAACCTCATCGATTTTCGTTCCGAG : TTATCAATGATTCGAATAGAACAGAGTTAGCTACTGAAGATGCTGATAAACTTGTAGATGGAATGGATTTTGGGGAATTGTGTGATGAGTTTGAATGCATTAGTAGCCCTTCTGTGGAAGCTACTGCTAGGCAGCTAGTTCGAGATATTCTCGAACTACGTGAAGGCAATCGTGCCCTCGGTACCTTTGCTGTCTCTGTCAAGTATAAG : GATCCAGTGAGAAGTTTTACAGGACGAGACAAGTACAAGAGACCATTATGGATAACTGATGCTCTGCAGAATCCTAAACCG : AGTGTGCAAGAAATGGTGATGTTATCAACAAGTGTGTTGAATATTAAGTGGACAATAAAAGGAAAAGCAAAGTCATTGATTGGTAGCATAGGAGGGGATTTGATGATCAAAGTAAATTCAAGATTCACTTTGAATCAAATAAGTGGACAAGTAGTTGAGCATGAAGAGGAATGGGATTTATCAGGATCATCCATCATTGCTCAAGCTTATTTCTGGGCATCGCGACGACTATTCGCTACTGTTGAAGCTGGAAAAGATGTGGTTGATATTGTTAATGACTTGAGTTCTAAATCTGCTAAAGAGAATAAAAACATGGATGTTTATCCTGACCCTTATGGTGATCCAGCGAAG : TTCTTTCAAAGGGATGACAGTTTCCAAAGAGATTTTTACCAAATTGCATTGCTGCTGGCTGTTATATATTTTGTCGTACAGTTCTTGAGGACAACTTTATGAGCTCCTAATTTTAACACTTGTATAATTGTAATTATTAAATCTATGTTTCTATAC</gDNA_template>
            <first_frame> *  L  V  I  M  K  K  Q  T  I  *  P  F  L  L  F  F  F  L  L  L  L  L  L  S  S  I  T  I  I  I  I  I  I  F  M  E  S  L  F  P  F  I  N  L  I  D  F  R  S  E  :  L  S  M  I  R  I  E  Q  S  *  L  L  K  M  L  I  N  L  *  M  E  W  I  L  G  N  C  V  M  S  L  N  A  L  V  A  L  L  W  K  L  L  L  G  S  *  F  E  I  F  S  N  Y  V  K  A  I  V  P  S  V  P  L  L  S  L  S  S  I  R :   I  Q  *  E  V  L  Q  D  E  T  S  T  R  D  H  Y  G  *  L  M  L  C  R  I  L  N  R :   V  C  K  K  W  *  C  Y  Q  Q  V  C  *  I  L  S  G  Q  *  K  E  K  Q  S  H  *  L  V  A  *  E  G  I  *  *  S  K  *  I  Q  D  S  L  *  I  K  *  V  D  K  *  L  S  M  K  R  N  G  I  Y  Q  D  H  P  S  L  L  K  L  I  S  G  H  R  D  D  Y  S  L  L  L  K  L  E  K  M  W  L  I  L  L  M  T  *  V  L  N  L  L  K  R  I  K  T  W  M  F  I  L  T  L  M  V  I  Q  R  S :   S  F  K  G  M  T  V  S  K  E  I  F  T  K  L  H  C  C  W  L  L  Y  I  L  S  Y  S  S  *  G  Q  L  Y  E  L  L  I  L  T  L  V  *  L  *  L  L  N  L  C  F  Y   </first_frame>
            <second_frame>  N  *  *  S  *  R  N  K  Q  Y  D  H  F  F  S  S  S  S  S  S  S  S  S  F  H  Q  L  Q  *  *  *  *  *  Y  L  W  K  V  Y  F  H  S  S  T  S  S  I  F  V  P  S :   Y  Q  *  F  E  *  N  R  V  S  Y  *  R  C  *  *  T  C  R  W  N  G  F  W  G  I  V  *  *  V  *  M  H  *  *  P  F  C  G  S  Y  C  *  A  A  S  S  R  Y  S  R  T  T  *  R  Q  S  C  P  R  Y  L  C  C  L  C  Q  V  *   : G  S  S  E  K  F  Y  R  T  R  Q  V  Q  E  T  I  M  D  N  *  C  S  A  E  S  *  T   : E  C  A  R  N  G  D  V  I  N  K  C  V  E  Y  *  V  D  N  K  R  K  S  K  V  I  D  W  *  H  R  R  G  F  D  D  Q  S  K  F  K  I  H  F  E  S  N  K  W  T  S  S  *  A  *  R  G  M  G  F  I  R  I  I  H  H  C  S  S  L  F  L  G  I  A  T  T  I  R  Y  C  *  S  W  K  R  C  G  *  Y  C  *  *  L  E  F  *  I  C  *  R  E  *  K  H  G  C  L  S  *  P  L  W  *  S  S  E   : V  L  S  K  G  *  Q  F  P  K  R  F  L  P  N  C  I  A  A  G  C  Y  I  F  C  R  T  V  L  E  D  N  F  M  S  S  *  F  *  H  L  Y  N  C  N  Y  *  I  Y  V  S  I  </second_frame>
            <third_frame>   I  S  N  H  E  E  T  N  N  M  T  I  S  S  L  L  L  P  P  P  P  P  P  F  I  N  Y  N  N  N  N  N  N  I  Y  G  K  S  I  S  I  H  Q  P  H  R  F  S  F  R   : V  I  N  D  S  N  R  T  E  L  A  T  E  D  A  D  K  L  V  D  G  M  D  F  G  E  L  C  D  E  F  E  C  I  S  S  P  S  V  E  A  T  A  R  Q  L  V  R  D  I  L  E  L  R  E  G  N  R  A  L  G  T  F  A  V  S  V  K  Y  K  :  D  P  V  R  S  F  T  G  R  D  K  Y  K  R  P  L  W  I  T  D  A  L  Q  N  P  K  P  :  S  V  Q  E  M  V  M  L  S  T  S  V  L  N  I  K  W  T  I  K  G  K  A  K  S  L  I  G  S  I  G  G  D  L  M  I  K  V  N  S  R  F  T  L  N  Q  I  S  G  Q  V  V  E  H  E  E  E  W  D  L  S  G  S  S  I  I  A  Q  A  Y  F  W  A  S  R  R  L  F  A  T  V  E  A  G  K  D  V  V  D  I  V  N  D  L  S  S  K  S  A  K  E  N  K  N  M  D  V  Y  P  D  P  Y  G  D  P  A  K  :  F  F  Q  R  D  D  S  F  Q  R  D  F  Y  Q  I  A  L  L  L  A  V  I  Y  F  V  V  Q  F  L  R  T  T  L  *  A  P  N  F  N  T  C  I  I  V  I  I  K  S  M  F  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112685" stop="112835"/>
                    <exon start="112940" stop="113148"/>
                    <exon start="113369" stop="113449"/>
                    <exon start="113953" stop="114303"/>
                    <exon start="114959" stop="115060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISNHEETNNMTISSLLLPPPPPPFINYNNNNNNIYGKSISIHQPHRFSFRVINDSNRTELATEDADKLVDGMDFGELCDEFECISSPSVEATARQLVRDILELREGNRALGTFAVSVKYKDPVRSFTGRDKYKRPLWITDALQNPKPSVQEMVMLSTSVLNIKWTIKGKAKSLIGSIGGDLMIKVNSRFTLNQISGQVVEHEEEWDLSGSSIIAQAYFWASRRLFATVEAGKDVVDIVNDLSSKSAKENKNMDVYPDPYGDPAKFFQRDDSFQRDFYQIALLLAVIYFVVQFLRTTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="122347" PGL_stop="115589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122347" e_stop="122243"/>
            <exon e_start="119872" e_stop="119710"/>
            <exon e_start="119624" e_stop="119551"/>
            <exon e_start="119036" e_stop="118946"/>
            <exon e_start="118403" e_stop="118328"/>
            <exon e_start="118006" e_stop="117935"/>
            <exon e_start="116219" e_stop="115589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.948" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.630" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.859" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.968" e_score="0.986"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122347" e_stop="122243" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.989">
            <gDNA_intron_boundary i_start="122242" i_stop="119873" i_length="2370"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="119872" e_stop="119710" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.948">
            <gDNA_intron_boundary i_start="119709" i_stop="119625" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119624" e_stop="119551" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="119550" i_stop="119037" i_length="514"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="119036" e_stop="118946" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.630" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118945" i_stop="118404" i_length="542"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118403" e_stop="118328" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.859" acc_prob="0.978">
            <gDNA_intron_boundary i_start="118327" i_stop="118007" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="118006" e_stop="117935" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.919" acc_prob="0.968">
            <gDNA_intron_boundary i_start="117934" i_stop="116220" i_length="1715"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="116219" e_stop="115589" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122347" stop="122243"/>
              <exon start="119872" stop="119710"/>
              <exon start="119624" stop="119551"/>
              <exon start="119036" stop="118946"/>
              <exon start="118403" stop="118328"/>
              <exon start="118006" stop="117935"/>
              <exon start="116219" stop="115589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGTTTTTTCACATTGCCTAGACAGCAGTGATGGTGGCGGCATATTTGCCATTGGACAAGTAGTTCAGCCAAAAGTAAAGTCAACACCACTAGTCCCAAATGA : GCCACATTATAATGTTGTCATGAAGGGAATTGAAGTTAATGGAGAAGCTCTAAACATCCCAACCACTATATTTGATGCGGGATCCAACAGAGGAACAATTATTGACAGTGGTACAACGTTAGCATATCTTCCTAACAAAGTCTATGATGCTCTCATGAGCAAG : TTGATGGTTCGGCAACCAGATCTGACGACTCATCTTGTCGAGGGGACCTTCCACTGCTTTTTCTATAGTAAAAA : GATTGATGATGGTTTCCCAGTTGTAACCTTTCAGTTTGCTAATTCTCTGTATTTGAAAGTTTATCCCCACGATTATCTTTTCGCAGTTAGT : GAAAACGAGTGGTGTATCGGTTGGCAGGACAGTGGAATGCAGACAAAGGATGGAAAGGAAATAACTCTCTTAGGAG : ATCTTGTGTTATCCAACAAGCTTGTGCTTTATGATCTTGAAAACCAGAGTATTGGCTGGACCGACTATAACT : GCTCTTCGAGCATCAAAGTCAGAGATGGAACTTCTGGGAAGGTGTATACTGTAGGTGCTCACAATATTTCATCAGCTTCTACGTTGAATTCAAGAATGGTTTTTACGTTCTTTATATTAGCAATCTCCCTCCTATGCAATTTGTTGAAGTGAGATACCAGACAAAAAACTGTATAGGGAGTCATTGTTGTACCATATCATTCCGCAGTTCGATGATTCTTTGGAATAACAAGTCTTATACCTCATCAACATGATTCTTGACAATTACACAAAATACAAACAACACTGGTTTTGATGAAACATACAGTTTCTCTTCTGTTCTAACACACTGGAACCGACCTCTCGTAGATGCTGTTGGTCTAAGTATTCCTTTCTTATTCTGTTTCATTTCCTGCCTGTTCTCTTGGGCCATGTGATAGAAGATGCTAATAGTGAAGAGATGCAAGCAAATGCTTGATAGGATAGTTTTTTTTTTTTTTTTGATGTTATTTATGAGTATTTTCAATATTAATGTAAATCAATTGCTGTTTTTTGTTTTGTTTTTATGAGGGATGTCATGTTAATGTATTTCTTAATTTATGAGTGCTAGATAAGAAGTGTTGTTTCAGCCTCAGGCTGCATTTGCAAGCAGA</gDNA_template>
            <first_frame> Q  S  F  F  T  L  P  R  Q  Q  *  W  W  R  H  I  C  H  W  T  S  S  S  A  K  S  K  V  N  T  T  S  P  K  *  :  A  T  L  *  C  C  H  E  G  N  *  S  *  W  R  S  S  K  H  P  N  H  Y  I  *  C  G  I  Q  Q  R  N  N  Y  *  Q  W  Y  N  V  S  I  S  S  *  Q  S  L  *  C  S  H  E  Q   : V  D  G  S  A  T  R  S  D  D  S  S  C  R  G  D  L  P  L  L  F  L  *  *  K  :  D  *  *  W  F  P  S  C  N  L  S  V  C  *  F  S  V  F  E  S  L  S  P  R  L  S  F  R  S  *   : *  K  R  V  V  Y  R  L  A  G  Q  W  N  A  D  K  G  W  K  G  N  N  S  L  R  R :   S  C  V  I  Q  Q  A  C  A  L  *  S  *  K  P  E  Y  W  L  D  R  L  *  L :   L  F  E  H  Q  S  Q  R  W  N  F  W  E  G  V  Y  C  R  C  S  Q  Y  F  I  S  F  Y  V  E  F  K  N  G  F  Y  V  L  Y  I  S  N  L  P  P  M  Q  F  V  E  V  R  Y  Q  T  K  N  C  I  G  S  H  C  C  T  I  S  F  R  S  S  M  I  L  W  N  N  K  S  Y  T  S  S  T  *  F  L  T  I  T  Q  N  T  N  N  T  G  F  D  E  T  Y  S  F  S  S  V  L  T  H  W  N  R  P  L  V  D  A  V  G  L  S  I  P  F  L  F  C  F  I  S  C  L  F  S  W  A  M  *  *  K  M  L  I  V  K  R  C  K  Q  M  L  D  R  I  V  F  F  F  F  L  M  L  F  M  S  I  F  N  I  N  V  N  Q  L  L  F  F  V  L  F  L  *  G  M  S  C  *  C  I  S  *  F  M  S  A  R  *  E  V  L  F  Q  P  Q  A  A  F  A  S  R </first_frame>
            <second_frame>  K  V  F  S  H  C  L  D  S  S  D  G  G  G  I  F  A  I  G  Q  V  V  Q  P  K  V  K  S  T  P  L  V  P  N  E :   P  H  Y  N  V  V  M  K  G  I  E  V  N  G  E  A  L  N  I  P  T  T  I  F  D  A  G  S  N  R  G  T  I  I  D  S  G  T  T  L  A  Y  L  P  N  K  V  Y  D  A  L  M  S  K  :  L  M  V  R  Q  P  D  L  T  T  H  L  V  E  G  T  F  H  C  F  F  Y  S  K  K :   I  D  D  G  F  P  V  V  T  F  Q  F  A  N  S  L  Y  L  K  V  Y  P  H  D  Y  L  F  A  V  S  :  E  N  E  W  C  I  G  W  Q  D  S  G  M  Q  T  K  D  G  K  E  I  T  L  L  G   : D  L  V  L  S  N  K  L  V  L  Y  D  L  E  N  Q  S  I  G  W  T  D  Y  N   : C  S  S  S  I  K  V  R  D  G  T  S  G  K  V  Y  T  V  G  A  H  N  I  S  S  A  S  T  L  N  S  R  M  V  F  T  F  F  I  L  A  I  S  L  L  C  N  L  L  K  *  D  T  R  Q  K  T  V  *  G  V  I  V  V  P  Y  H  S  A  V  R  *  F  F  G  I  T  S  L  I  P  H  Q  H  D  S  *  Q  L  H  K  I  Q  T  T  L  V  L  M  K  H  T  V  S  L  L  F  *  H  T  G  T  D  L  S  *  M  L  L  V  *  V  F  L  S  Y  S  V  S  F  P  A  C  S  L  G  P  C  D  R  R  C  *  *  *  R  D  A  S  K  C  L  I  G  *  F  F  F  F  F  *  C  Y  L  *  V  F  S  I  L  M  *  I  N  C  C  F  L  F  C  F  Y  E  G  C  H  V  N  V  F  L  N  L  *  V  L  D  K  K  C  C  F  S  L  R  L  H  L  Q  A   </second_frame>
            <third_frame>   K  F  F  H  I  A  *  T  A  V  M  V  A  A  Y  L  P  L  D  K  *  F  S  Q  K  *  S  Q  H  H  *  S  Q  M   : S  H  I  I  M  L  S  *  R  E  L  K  L  M  E  K  L  *  T  S  Q  P  L  Y  L  M  R  D  P  T  E  E  Q  L  L  T  V  V  Q  R  *  H  I  F  L  T  K  S  M  M  L  S  *  A  S :   *  W  F  G  N  Q  I  *  R  L  I  L  S  R  G  P  S  T  A  F  S  I  V  K   : R  L  M  M  V  S  Q  L  *  P  F  S  L  L  I  L  C  I  *  K  F  I  P  T  I  I  F  S  Q  L  V :   K  T  S  G  V  S  V  G  R  T  V  E  C  R  Q  R  M  E  R  K  *  L  S  *  E  :  I  L  C  Y  P  T  S  L  C  F  M  I  L  K  T  R  V  L  A  G  P  T  I  T  :  A  L  R  A  S  K  S  E  M  E  L  L  G  R  C  I  L  *  V  L  T  I  F  H  Q  L  L  R  *  I  Q  E  W  F  L  R  S  L  Y  *  Q  S  P  S  Y  A  I  C  *  S  E  I  P  D  K  K  L  Y  R  E  S  L  L  Y  H  I  I  P  Q  F  D  D  S  L  E  *  Q  V  L  Y  L  I  N  M  I  L  D  N  Y  T  K  Y  K  Q  H  W  F  *  *  N  I  Q  F  L  F  C  S  N  T  L  E  P  T  S  R  R  C  C  W  S  K  Y  S  F  L  I  L  F  H  F  L  P  V  L  L  G  H  V  I  E  D  A  N  S  E  E  M  Q  A  N  A  *  *  D  S  F  F  F  F  F  D  V  I  Y  E  Y  F  Q  Y  *  C  K  S  I  A  V  F  C  F  V  F  M  R  D  V  M  L  M  Y  F  L  I  Y  E  C  *  I  R  S  V  V  S  A  S  G  C  I  C  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122346" stop="122243"/>
                    <exon start="119872" stop="119710"/>
                    <exon start="119624" stop="119551"/>
                    <exon start="119036" stop="118946"/>
                    <exon start="118403" stop="118328"/>
                    <exon start="118006" stop="117935"/>
                    <exon start="116219" stop="116068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVFSHCLDSSDGGGIFAIGQVVQPKVKSTPLVPNEPHYNVVMKGIEVNGEALNIPTTIFDAGSNRGTIIDSGTTLAYLPNKVYDALMSKLMVRQPDLTTHLVEGTFHCFFYSKKIDDGFPVVTFQFANSLYLKVYPHDYLFAVSENEWCIGWQDSGMQTKDGKEITLLGDLVLSNKLVLYDLENQSIGWTDYNCSSSIKVRDGTSGKVYTVGAHNISSASTLNSRMVFTFFILAISLLCNLLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 81 chains have been computed
$ 
$ memory statistics:
$ 112144 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 9345 bytes was the average size of a spliced alignment
$ 13744 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1963 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 133 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:37:22
-->
