<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:18:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271459" ref_strand="+" ref_description="SGN-E271459 [cLEM-5-B20]">
      <seq>tatcatttaaggcttaaggtccttgaagagacattaaaatcaactagcacaggcgcccgcactataccagatggaagaagttcaagcaacggtccttcgcgtcggcgatcactgggtggtgctgacaacatctccaaattgacctccaatggtatcttacccaagagatcaccatcatttcagctgagatcttctggggccagtacagtgttgaagcatgctaaagggacatctaagtcgtttgatggtggttcaagatctttggacaggagtaaaaaacttctgaatggaacaggtccaaatttcaacagcagcaagtcatgtgatgtgtccaaagacaatgagactgaaagcaattcatggaaagcgaatcaagatgaaaaacacaatgactcgcaaatggcaagaacagaggatactgtgccaggagttttatatgatttgctgcaaaaagaagtaattgccttgaggaaagctggtcatgagaaggatcaaagtcttaatgacaaagacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="888" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="588" g_stop="73" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-E271459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="588" e_stop="73"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATTTAAGGCTCAAGGTCCTTGAAGAGACATTAAAATCAACTAGCACAGGCGCCCGCACTATACCAGATGGAAGAAGTTCAAGCAACGGTCCTTCGCGTCGGCGATCACTGGGTGGTGCTGACAACATCTCCAAATTGACCTCCAATGGTATCTTACCCAAGAGATCACCATCATTTCAGCTGAGATCTTCTGGGGCCAGTACAGTGTTGAAGCATGCTAAAGGGACATCTAAGTCGTTTGATGGTGGTTCAAGATCTTTGGACAGGAGTAAAAAACTTCTGAATGGAACAGGTCCAAATTTCAACAGCAGCAAGTCATGTGATGTGTCCAAAGACAATGAGACTGAAAGCAATTCATGGAAAGCGAATCAAGATGAAAAACACAATGACTCGCAAATGGCAAGAACAGAGGATACTGTGCCAGGAGTTTTATATGATTTGCTGCAAAAAGAAGTAATTGCCTTGAGGAAAGCTGGTCATGAGAAGGATCAAAGTCTTAATGACAAAGACGAC</genome_strand>
        <mrna_strand>TATCATTTAAGGCTTAAGGTCCTTGAAGAGACATTAAAATCAACTAGCACAGGCGCCCGCACTATACCAGATGGAAGAAGTTCAAGCAACGGTCCTTCGCGTCGGCGATCACTGGGTGGTGCTGACAACATCTCCAAATTGACCTCCAATGGTATCTTACCCAAGAGATCACCATCATTTCAGCTGAGATCTTCTGGGGCCAGTACAGTGTTGAAGCATGCTAAAGGGACATCTAAGTCGTTTGATGGTGGTTCAAGATCTTTGGACAGGAGTAAAAAACTTCTGAATGGAACAGGTCCAAATTTCAACAGCAGCAAGTCATGTGATGTGTCCAAAGACAATGAGACTGAAAGCAATTCATGGAAAGCGAATCAAGATGAAAAACACAATGACTCGCAAATGGCAAGAACAGAGGATACTGTGCCAGGAGTTTTATATGATTTGCTGCAAAAAGAAGTAATTGCCTTGAGGAAAGCTGGTCATGAGAAGGATCAAAGTCTTAATGACAAAGACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729292" ref_strand="+" ref_description="SGN-E729292 [LA20CD11]">
      <seq>gaacgaaaaactcttgaccgggagctagcacgtgccaaggttacagctaatagggtagcaaccgtggttgctaatgaatggaaagatgccagtgataaagtaatgcctgttaaacagtggcttgaagaaaggaagtttctgcagggtgagttgcaacagttacgcgacaagcttgcaatctctgaacgaactgcgaaatctgaagcccagttgaaagagaaatatcatttaaggctcaaggtccttgaagagacattaaaatcaactagcacaggcgcccgcactataccagatggaagaagttcaagcaacggtccttcgcgtcggcgatcactgggtggtgctgacaacatctccaaattgacctccaatggtatcttacccaagagatcaccatcatttcagctgagatcttctggggccagtacagtgttgaagcatgctaaagggacatctaagtcgtttgatggtggttcaagatctttggacaggagtaaaaaacttctgaatggaacaggtccaaatttcaacagcagcaagtcatgtgatgtgtccaaagacaatgagactgaaagcaattcatggaaagcgaatcaagatgaaaaacacaatgactcgcaaatggcaagaacagaggatactgtgccaggagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="1315" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1015" g_stop="872" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="871" i_stop="759" i_length="113">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="758" g_stop="687" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="216" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="686" i_stop="595" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="594" g_stop="156" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="655" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-E729292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1015" e_stop="872"/>
          <exon e_start="758" e_stop="687"/>
          <exon e_start="594" e_stop="156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAAAAACTCTTGACCGGGAGCTAGCACGTGCCAAGGTTACAGCTAATAGGGTAGCAACCGTGGTTGCTAATGAATGGAAAGATGCCAGTGATAAAGTAATGCCTGTTAAACAGTGGCTTGAAGAAAGGAAGTTTCTGCAGGTTTGATACTTTTCCATAACTTCTGAAACTAGATCATAGGGTCATCTTTTCCTGATACAACTGAAAGTGTTCTGAATAAAGAAAATGAACTCACACCACAAAATTTTCTGCAGGGTGAGTTGCAACAGTTACGCGACAAGCTTGCAATCTCTGAACGAACTGCGAAATCTGAAGCCCAGTTGAAAGTAATAATTCTGTCCAATAGAGGGTGTATCTTAAAATGATTCAGATGTCTTTTCTATAATTTTTTCTATCTCAACCTTGATAATCTCCTCAGGAGAAATATCATTTAAGGCTCAAGGTCCTTGAAGAGACATTAAAATCAACTAGCACAGGCGCCCGCACTATACCAGATGGAAGAAGTTCAAGCAACGGTCCTTCGCGTCGGCGATCACTGGGTGGTGCTGACAACATCTCCAAATTGACCTCCAATGGTATCTTACCCAAGAGATCACCATCATTTCAGCTGAGATCTTCTGGGGCCAGTACAGTGTTGAAGCATGCTAAAGGGACATCTAAGTCGTTTGATGGTGGTTCAAGATCTTTGGACAGGAGTAAAAAACTTCTGAATGGAACAGGTCCAAATTTCAACAGCAGCAAGTCATGTGATGTGTCCAAAGACAATGAGACTGAAAGCAATTCATGGAAAGCGAATCAAGATGAAAAACACAATGACTCGCAAATGGCAAGAACAGAGGATACTGTGCCAGGAGTTT</genome_strand>
        <mrna_strand>GAACGAAAAACTCTTGACCGGGAGCTAGCACGTGCCAAGGTTACAGCTAATAGGGTAGCAACCGTGGTTGCTAATGAATGGAAAGATGCCAGTGATAAAGTAATGCCTGTTAAACAGTGGCTTGAAGAAAGGAAGTTTCTGCAG.................................................................................................................GGTGAGTTGCAACAGTTACGCGACAAGCTTGCAATCTCTGAACGAACTGCGAAATCTGAAGCCCAGTTGAAA............................................................................................GAGAAATATCATTTAAGGCTCAAGGTCCTTGAAGAGACATTAAAATCAACTAGCACAGGCGCCCGCACTATACCAGATGGAAGAAGTTCAAGCAACGGTCCTTCGCGTCGGCGATCACTGGGTGGTGCTGACAACATCTCCAAATTGACCTCCAATGGTATCTTACCCAAGAGATCACCATCATTTCAGCTGAGATCTTCTGGGGCCAGTACAGTGTTGAAGCATGCTAAAGGGACATCTAAGTCGTTTGATGGTGGTTCAAGATCTTTGGACAGGAGTAAAAAACTTCTGAATGGAACAGGTCCAAATTTCAACAGCAGCAAGTCATGTGATGTGTCCAAAGACAATGAGACTGAAAGCAATTCATGGAAAGCGAATCAAGATGAAAAACACAATGACTCGCAAATGGCAAGAACAGAGGATACTGTGCCAGGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441654" ref_strand="+" ref_description="SGN-E441654 [cSTA-31-G21]">
      <seq>ttttaaacatgatttattcatagaaagtgagcggaccgtttaaggggacagatcggagacggcggaggtttccggcgataacagctacaacgtgcgacagccgacgagtgacactgcaggtattacaacgcctttgacggtatcagcttcggtcaaggaagggaagacttaccggagaaagacgtccatgaggccaagccttgacgctgatgagttcttaaaccttctccacgggtcggatccggtgaaacaggagcttaatcgactggagaatgaactaagagataaggaccgagaattatctgattctcaggcggagatcaagtcattgagattgtcagagcgcttacgggaaaaggctgttgaagagcttacggacgagtggtcaaaggttgacgagaagctcaagctgactgaatctcttttggaaagcaagaatcttgaaattaagaaaactaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="3554" stop="1497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3301" g_stop="3018" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3017" i_stop="2927" i_length="91">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2926" g_stop="2841" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="370" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2840" i_stop="1976" i_length="865">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1975" g_stop="1910" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="436" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1909" i_stop="1824" i_length="86">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1823" g_stop="1797" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="463" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-E441654" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3301" e_stop="3018"/>
          <exon e_start="2926" e_stop="2841"/>
          <exon e_start="1975" e_stop="1910"/>
          <exon e_start="1823" e_stop="1797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAATATGAATTATTCATTGAAAGTGAGCTTACCGTAGAAGTTTATAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACAGCAGGTTATACAACGCCGTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAGGACGTCCATGAGGCCAAGCCTTGACGCCGATGAGTTCTTAAACCTTCTCCACGGATCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTTAGAGGTCAGTATTTATAGCTGGATCCAATGCGATTTTTTTGACTAATTCTGTTGTGTTTTCCCTGCTAATACTGTGTGTGAATATGTCATTGTAGATAAGGACCGAGAATTGTCTGAGGCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGAGAAAAGGCTGTTGAAGAGGTTCTGCTAACTTCTTACTATATGGCATGCTATGAAATTATCTATTTTATGCTTTCTGATATATTGATTTAATTTGTCTATCGTCTGCTAAGTGTTAATAGAGTATGATTTTGAGTTACTGAGGATAAGACGAAGTAAGAAGGTGATATCATTTTCAATTTTGACATCTAGAAAATTGAGTTCAAAGGTCAAGTATAATCACATTTGGAACTGTTGAAAAAGACTGGGTTTGACTAGGAGAAGCATTGAGTGTGAAATGGAAAATGACTTCCATCGCGGAGTATGGAAAGAAATGTAGGAGTTATGAAACAGCTAGGACAAGAGGACATAATTTTGTTGATTGTTTTGTAACAGAGAAATATATGGTAAAACTATAAGATTCAAACTGCAGTTTTTGGGGCCTTCAGTATCAATCAATTCTTTTCTTGTTTAAATTCTTCTGTTTTGGAAAAAGTTTCATTTGAATGTGAATTGGTGTTATGTAATTGAATTTTCTTTTAATTTCTGCTTTAGTACGGGAGAGTCGAGCAACAGAATGCTGTTCGTATCATTTGGCTCACATTCGAGGATTCATTAAACAACATTTAAGGAAGGCAGCTTGTTCCAAAATTAGAATAACTCTACAAACTTCCACATCAATTATTGAAAACTGCAATCTACTGATAGTTGATGGGCAGGTCTAGATTAGTCTTTGCATTCATGTTGCCTTTTTTGGCAACATAATTCTTAGTGGTAGTGTTGCATATCTGTCCCTTAGGCACTTTGAGTTGGGTACATATGACTTATTTTCCTGTGCTAATTTTAAAGCTATTGGTTTGTGCTAAGAACACAGGCTGATAAAGTTAACTGTTTCCTGTGATGTTAGCTTACGGACGAGTGGTCAAGGGTTGACGAGAAGCTCAAGCTGACTGAGTCTCTTTTGGAAAGCAAGGTGCTAACTCAAACTCTTCCCTATAAATTTTCTTTTATTTTGTTAATGTGCTGTTCATAACTGTGTATACAATTCTTGCTTGCCAGAATCTTGAAATTAAGAAAATTAATGAA</genome_strand>
        <mrna_strand>TTTTAAACATGATTTATTCATAGAAAGTGAGCGGACCGTTTAAGGGGACAGATCGGAGACGGCGGAGGTTTCCGGCGATAACAGCTACAACGTGCGACAGCCGACGAGTGACACTGCAGGTATTACAACGCCTTTGACGGTATCAGCTTCGGTCAAGGAAGGGAAGACTTACCGGAGAAAGACGTCCATGAGGCCAAGCCTTGACGCTGATGAGTTCTTAAACCTTCTCCACGGGTCGGATCCGGTGAAACAGGAGCTTAATCGACTGGAGAATGAACTAAGAG...........................................................................................ATAAGGACCGAGAATTATCTGATTCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGGGAAAAGGCTGTTGAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACGGACGAGTGGTCAAAGGTTGACGAGAAGCTCAAGCTGACTGAATCTCTTTTGGAAAGCAAG......................................................................................AATCTTGAAATTAAGAAAACTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449471" ref_strand="+" ref_description="SGN-E449471 [cSTS-6-J5]">
      <seq>gtttacagatcggagatggcggaggtttccggcgataacagctacaatgtgcgacagccgacgagtgacactgcaggttttacaacgcctttgacggtatcagcttcgttcaaggaagggaagacttaccggagaaagacgtccatgaggccaagccttgacgctgatgagttcttaaaccttctccacgggtcggatccggtgaaattggagcttaatcgactggagaatgaactaagagataaggaccgagaattatctgattctcaggcggagatcaagtcattgagattgtcagagcgcttacgggaaaaggctgttgaagaggttctgctaacttcttacaatgtgacatgctatgaaattatctattttatgctttctgatatattgatttaatttggctatggactgctacgtgctaatagagtatgattttgagttactgaggataagaggaagtaagaaattgatgtcattttcacttttgacatgtagaaaattgagttaaaaggtaagtgtaatcacagttgaaactgttgaaaaagactggggttgactaggagatgcattgagtgtgaaatggaaaatgactgcattcgtggagtatggcaagaattgtangagttgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="3558" stop="2233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3258" g_stop="3018" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3017" i_stop="2927" i_length="91">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2926" g_stop="2532" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="635" r_length="394" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-E449471" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3258" e_stop="3018"/>
          <exon e_start="2926" e_stop="2532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACAGCAGGTTATACAACGCCGTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAGGACGTCCATGAGGCCAAGCCTTGACGCCGATGAGTTCTTAAACCTTCTCCACGGATCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTTAGAGGTCAGTATTTATAGCTGGATCCAATGCGATTTTTTTGACTAATTCTGTTGTGTTTTCCCTGCTAATACTGTGTGTGAATATGTCATTGTAGATAAGGACCGAGAATTGTCTGAGGCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGAGAAAAGGCTGTTGAAGAGGTTCTGCTAACTTCTTACTATATGGCATGCTATGAAATTATCTATTTTATGCTTTCTGATATATTGATTTAATTTGTCTATCGTCTGCTAAGTGTTAATAGAGTATGATTTTGAGTTACTGAGGATAAGACGAAGTAAGAAGGTGATATCATTTTCAATTTTGACATCTAGAAAATTGAGTTCAAAGGTCAAGTATAATCACATTTGGAACTGTTGAAAAAGACTGGGTTTGACTAGGAGAAGCATTGAGTGTGAAATGGAAAATGACTTCCATCGCGGAGTATGGAAAGAAATGTAGGAGTTATGAAA</genome_strand>
        <mrna_strand>GTTTACAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACTGCAGGTTTTACAACGCCTTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAAGACGTCCATGAGGCCAAGCCTTGACGCTGATGAGTTCTTAAACCTTCTCCACGGGTCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTAAGAG...........................................................................................ATAAGGACCGAGAATTATCTGATTCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGGGAAAAGGCTGTTGAAGAGGTTCTGCTAACTTCTTACAATGTGACATGCTATGAAATTATCTATTTTATGCTTTCTGATATATTGATTTAATTTGGCTATGGACTGCTACGTGCTAATAGAGTATGATTTTGAGTTACTGAGGATAAGAGGAAGTAAGAAATTGATGTCATTTTCACTTTTGACATGTAGAAAATTGAGTTAAAAGGT-AAGTGTAATCACAGTTGAAACTGTTGAAAAAGACTGGGGTTGACTAGGAGATGCATTGAGTGTGAAATGGAAAATGACTGCATTCGTGGAGTATGGCAAGAATTGTANGAGTTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422983" ref_strand="+" ref_description="SGN-E422983 [STM-41-G14]">
      <seq>gtttacagatcggagatggcggaggtttccggcgataacagctacaatgtgcgacagccgacgagtgacactgcaggttttacaacgcctttgacggtatcagcttcgttcaaggaagggaagacttaccggagaaagacgtccatgaggccaagccttgacgctgatgagttcttaaaccttctccacgggtcggatccggtgaaattggagcttaatcgactggagaatgaactaagagataaggaccgagaattatctgattctcaggcggagatcaagtcattgagattgtcagagcgcttacgggaaaaggctgttgaagaggttctgctaacttcttacaatgtgacatgctatgaaattatctattttatgctttctgatatattgatttaatttggctatggactgctacgtgctaatagagtatgattttgagttactgaggataagaggaagtaagaaattgatgtcattttcacttttgacatgtagaaaattgagttaaaaggtaagtgtaatcacagttgaaactgttgaaaaagactggggttgactangagatgcattgagtgtgaaatggaaatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="3558" stop="2272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3258" g_stop="3018" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3017" i_stop="2927" i_length="91">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2926" g_stop="2571" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="595" r_length="354" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-E422983" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3258" e_stop="3018"/>
          <exon e_start="2926" e_stop="2571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACAGCAGGTTATACAACGCCGTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAGGACGTCCATGAGGCCAAGCCTTGACGCCGATGAGTTCTTAAACCTTCTCCACGGATCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTTAGAGGTCAGTATTTATAGCTGGATCCAATGCGATTTTTTTGACTAATTCTGTTGTGTTTTCCCTGCTAATACTGTGTGTGAATATGTCATTGTAGATAAGGACCGAGAATTGTCTGAGGCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGAGAAAAGGCTGTTGAAGAGGTTCTGCTAACTTCTTACTATATGGCATGCTATGAAATTATCTATTTTATGCTTTCTGATATATTGATTTAATTTGTCTATCGTCTGCTAAGTGTTAATAGAGTATGATTTTGAGTTACTGAGGATAAGACGAAGTAAGAAGGTGATATCATTTTCAATTTTGACATCTAGAAAATTGAGTTCAAAGGTCAAGTATAATCACATTTGGAACTGTTGAAAAAGACTGGGTTTGACTAGGAGAAGCATTGAGTGTGAAATGGAAAATGACTT</genome_strand>
        <mrna_strand>GTTTACAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACTGCAGGTTTTACAACGCCTTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAAGACGTCCATGAGGCCAAGCCTTGACGCTGATGAGTTCTTAAACCTTCTCCACGGGTCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTAAGAG...........................................................................................ATAAGGACCGAGAATTATCTGATTCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGGGAAAAGGCTGTTGAAGAGGTTCTGCTAACTTCTTACAATGTGACATGCTATGAAATTATCTATTTTATGCTTTCTGATATATTGATTTAATTTGGCTATGGACTGCTACGTGCTAATAGAGTATGATTTTGAGTTACTGAGGATAAGAGGAAGTAAGAAATTGATGTCATTTTCACTTTTGACATGTAGAAAATTGAGTTAAAAGGT-AAGTGTAATCACAGTTGAAACTGTTGAAAAAGACTGGGGTTGACTANGAGATGCATTGAGTGTGAAATGG-AAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444350" ref_strand="+" ref_description="SGN-E444350 [cSTA-42-J15]">
      <seq>gttgtaaatatgaattattcattgaaagtgagcttaccgtagaagtttacagatcggagatggcggaggtttccggcgataacagctacaatgtgcgacagccgacgagtgacactgcaggttttacaacgcctttgacggtatcagcttcgttcaaggaagggaagacttaccggagaaggacgtccatgaggccaagccttgacgctgatgagttcttaaaccttctccacgggtcggatccggtgaaattggagcttaatcgactggagaatgaacttagagataaggaccgagaattgtctgaggctcaggcggagatcaagtcattgagattgtcagagcgcttacgggaaaaggctgttgaagagcttacggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="3602" stop="2535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3302" g_stop="3018" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3017" i_stop="2927" i_length="91">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2926" g_stop="2841" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="371" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-E444350" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3302" e_stop="3018"/>
          <exon e_start="2926" e_stop="2841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTAAATATGAATTATTCATTGAAAGTGAGCTTACCGTAGAAGTTTATAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACAGCAGGTTATACAACGCCGTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAGGACGTCCATGAGGCCAAGCCTTGACGCCGATGAGTTCTTAAACCTTCTCCACGGATCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTTAGAGGTCAGTATTTATAGCTGGATCCAATGCGATTTTTTTGACTAATTCTGTTGTGTTTTCCCTGCTAATACTGTGTGTGAATATGTCATTGTAGATAAGGACCGAGAATTGTCTGAGGCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGAGAAAAGGCTGTTGAAGAG</genome_strand>
        <mrna_strand>GTTGTAAATATGAATTATTCATTGAAAGTGAGCTTACCGTAGAAGTTTACAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACTGCAGGTTTTACAACGCCTTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAGGACGTCCATGAGGCCAAGCCTTGACGCTGATGAGTTCTTAAACCTTCTCCACGGGTCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTTAGAG...........................................................................................ATAAGGACCGAGAATTGTCTGAGGCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGGGAAAAGGCTGTTGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592813" ref_strand="+" ref_description="SGN-E592813 [36029]">
      <seq>ctcccccaaccccactcccaccccaccccaacccccagtgataccaaattcatcaaaagtttcagcaaaaactcaaatacgtcagctaaatcaacacttatcgatgaggtgattatagtgataatcaagattcagtttttgttgagaaaaaaggagaagaaagattgaatttttatccatattttgaaccttcaagaaaaatggcaactgagccaccaaatttgatttcttccgaccccacaactccacttcttcaccggcgactcgaaaacggcggcagagggggtcgtcagtcatcacttgctgtacttcttggtcgggtcaccggaaggcgcggtggcgggggcgcgtcgttgttggtgagggagacggcagcgcgtgagctggatgaacgaagagctgattggggttattcgaagccggtggtggcgttggatatgatgtggaatttggggtttgtgattgtgtctgttgtgattttgtcatgtgcggtggatgagtcgccgaatgttcccattagggtttggatttgtgggtatgctttgcagtgtgtggtgcatgtggtgcttgtgtggttggaatataaaaggaggagtttgcaatgaggagctgatgtaaggggaaatgatggtgagggttggtgaagagcaggaatggggtaggggtattggtaatcagtcaagtttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="22851" stop="24137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23142" g_stop="23835" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23836" i_stop="23898" i_length="63">
            <donor d_prob="1.000" d_score="0.83"/>
            <acceptor a_prob="0.766" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23899" g_stop="23905" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="689" r_length="6" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E592813" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23142" e_stop="23835"/>
          <exon e_start="23899" e_stop="23905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACAGCTCCCCACCCCCACCCCCCACCCCCACCCCCACAGTGACACCAAATTCATCAAAAGTTTCAGCAAAAGCTCAAAAACGTCAGCTAAATCAACGCTTATCGATGAGGTAATTTATAGAGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGTTGAAAGATTGAATTTTTATCCATATTTTGAACCTTCAAGAAAAAATGGCAACTGAGCCACCAAATTTGATTTCCTCTGACCCCACAACTCCACTTCTACACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCGGTACTTCTTGGTCGGGTCACCGGAAGGCGCGGTGGCGGAGGAGGTGGCGCGTCGTTGTTGGTGAGGGAGACGGCGGCGCGTGAGCTGGATGAGCGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTTTTGTGATTTTGTCATGTGCGGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGG-TGGTGAAGAG-AGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAGGTAAGGTTCATTTCTTGTTTGATAAATTTCAGATTTTTCTTTTGTGTAGCATGATGTTGGTAGTGTTACT</genome_strand>
        <mrna_strand>CTCCCCCAACCCCACTCCCAC--CCCACCCCAACCCC--CAGTGATACCAAATTCATCAAAAGTTTCAGCAAAAACTCAAATACGTCAGCTAAATCAACACTTATCGATGAGGTGA-TTATAGTGATAATCAAGATTCAGTTTTTGTTGAGAAAAAAGGAGAAGAAAGATTGAATTTTTATCCATATTTTGAACCTTCAAG-AAAAATGGCAACTGAGCCACCAAATTTGATTTCTTCCGACCCCACAACTCCACTTCTTCACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCTGTACTTCTTGGTCGGGTCACCGGAAGGCGCGGTGGC----G-GG-GGCGCGTCGTTGTTGGTGAGGGAGACGGCAGCGCGTGAGCTGGATGAACGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTGTTGTGATTTTGTCATGTGCGGTGGATGAGTCGCCGAATGTTCCCATTAGGGTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAAAAGGAGGAGTTTGCAATGAGGAGCTGATGTAAGGGGAAATGATGGTGAGGGTTGGTGAAGAGCAGGAATGGGG-TAGGGGTATTGGTAATCAGTCAAG...............................................................T-TTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423548" ref_strand="+" ref_description="SGN-E423548 [STM-42-M23]">
      <seq>cccaccccaccccccagtgacaccaaattcatcaaaagtttcagcaaaaactcaaatacgtcagctaaatcaacacttatcgatgaggtgactatagtgataatcaagattcagtttttgttgagcaaaaaggagaagaaagattgaatttttatccatattgaacattcaagaaaaatggcaactgagccaccaagtatgatttcttccgaccccacaactccacttcttcaccggcgactcgaaaacggcggcagagggggtcgtcagtcatcacttgctgtgcttcttggtcgggtcaccggaaggcgcggcggcggcggtggcgggggagcgtcgttgttggtgagggagacggcggcgcgtgagctggatgagcgaagagctgattggggttattcgaagccggtggtggcgttggatatgatgtggaatttggggtttgtgattgtgtctgttgtgattttgtcatgtgcggtggatgagtcaccgaatgttcccattagggtttggatttgtgggtatgctttgcagtgtgtggtgcatgtggtgcttgtgtggttggaatatagaaggaggagtttgcaaggaggaactgatgcagagggaaatgatggtgtggatggtgaaaagaggaatggggttttggctattggtaatcagtcaagttttgctaaacgatgtgaatatatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="22865" stop="24142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23165" g_stop="23835" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E423548" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23165" e_stop="23835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCCACCCCCACAGTGACACCAAATTCATCAAAAGTTTCAGCAAAAGCTCAAAAACGTCAGCTAAATCAACGCTTATCGATGAGGTAATTTATAGAGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGTTGAAAGATTGAATTTTTATCCATATTTTGAACCTTCAAGAAAAAATGGCAACTGAGCCACCAAATTTGATTTCCTCTGACCCCACAACTCCACTTCTACACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCGGTACTTCTTGGTCGGGTCACCGGAA-G-GC-GCGGTGGCGGAGGAGGTGGCGCGTCGTTGTTGGTGAGGGAGACGGCGGCGCGTGAGCTGGATGAGCGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTTTTGTGATTTTGTCATGTGCGGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAG</genome_strand>
        <mrna_strand>CCCAC-CCCACCCCC-CAGTGACACCAAATTCATCAAAAGTTTCAGCAAAAACTCAAATACGTCAGCTAAATCAACACTTATCGATGAGGTGA-CTATAGTGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGAAGAAAGATTGAATTTTTATCCATA--TTGAACATTCAAG-AAAAATGGCAACTGAGCCACCAAGTATGATTTCTTCCGACCCCACAACTCCACTTCTTCACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCTGTGCTTCTTGGTCGGGTCACCGGAAGGCGCGGCGGCGGCGGTGGCGGGGGAGCGTCGTTGTTGGTGAGGGAGACGGCGGCGCGTGAGCTGGATGAGCGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTGTTGTGATTTTGTCATGTGCGGTGGATGAGTCACCGAATGTTCCCATTAGGGTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAGAAGGAGGAGTTTGCAAGGAGGAACTGATGCAGAGGGAAATGATGGTGTGGATGGTGAAAAGAGGAATGGGGTTTTGGCTATTGGTAATCAGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450658" ref_strand="+" ref_description="SGN-E450658 [cSTS-10-E1]">
      <seq>cccaccccaccccccagtgacaccaaattcatcaaaagtttcagcaaaaactcaaatacgtcagctaaatcaacacttatcgatgaggtgactatagtgataatcaagattcagtttttgttgagcaaaaaggagaagaaagattgaatttttatccatattgaacattcaagaaaaatggcaactgagccaccaagtatgatttcttccgaccccacaactccacttcttcaccggcgactcgaaaacggcggcagagggggtcgtcagtcatcacttgctgtgcttcttggtcgggtcaccggaaggcgcggcggcggcggtggcgggggagcgtcgttgttggtgagggagacggcggcgcgtgagctggatgagcgaagagctgattggggttattcgaagccggtggtggcgttggatatgatgtggaatttggggtttgtgattgtgtctgttgtgattttgtcatgtgcggtggatgagtcaccgaatgttcccattagggtttggatttgtgggtatgctttgcagtgtgtggtgcatgtggtgcttgtgtggttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="22865" stop="24033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23165" g_stop="23733" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E450658" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23165" e_stop="23733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCCACCCCCACAGTGACACCAAATTCATCAAAAGTTTCAGCAAAAGCTCAAAAACGTCAGCTAAATCAACGCTTATCGATGAGGTAATTTATAGAGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGTTGAAAGATTGAATTTTTATCCATATTTTGAACCTTCAAGAAAAAATGGCAACTGAGCCACCAAATTTGATTTCCTCTGACCCCACAACTCCACTTCTACACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCGGTACTTCTTGGTCGGGTCACCGGAA-G-GC-GCGGTGGCGGAGGAGGTGGCGCGTCGTTGTTGGTGAGGGAGACGGCGGCGCGTGAGCTGGATGAGCGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTTTTGTGATTTTGTCATGTGCGGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGA</genome_strand>
        <mrna_strand>CCCAC-CCCACCCCC-CAGTGACACCAAATTCATCAAAAGTTTCAGCAAAAACTCAAATACGTCAGCTAAATCAACACTTATCGATGAGGTGA-CTATAGTGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGAAGAAAGATTGAATTTTTATCCATA--TTGAACATTCAAG-AAAAATGGCAACTGAGCCACCAAGTATGATTTCTTCCGACCCCACAACTCCACTTCTTCACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCTGTGCTTCTTGGTCGGGTCACCGGAAGGCGCGGCGGCGGCGGTGGCGGGGGAGCGTCGTTGTTGGTGAGGGAGACGGCGGCGCGTGAGCTGGATGAGCGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTGTTGTGATTTTGTCATGTGCGGTGGATGAGTCACCGAATGTTCCCATTAGGGTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575805" ref_strand="+" ref_description="SGN-E575805 [35488]">
      <seq>aaatcaacacttatcgatgaggtgattatagtgataatcaagattcagttttagttgagcaaaaaggagaagaaagattgaatttttatccatattgaacattcaataaaaatggcaactgagccaccaagtatgatttcttccgaccccacaactcgcacttcttcaccggcgactcgaaaacggcggcagagggggtcgtcagtcatcagttgctgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="22933" stop="23757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23233" g_stop="23457" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E575805" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23233" e_stop="23457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAACGCTTATCGATGAGGTAATTTATAGAGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGTTGAAAGATTGAATTTTTATCCATATTTTGAACCTTCAAGAAAAAATGGCAACTGAGCCACCAAATTTGATTTCCTCTGACCCCACAACTC-CACTTCTACACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCGGTACT</genome_strand>
        <mrna_strand>AAATCAACACTTATCGATGAGGTGA-TTATAGTGATAATCAAGATTCAGTTTTAGTTGAGCAAAAAGGAGAAGAAAGATTGAATTTTTATCCATA--TTGAACATTCAA-TAAAAATGGCAACTGAGCCACCAAGTATGATTTCTTCCGACCCCACAACTCGCACTTCTTCACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCAGTTGCTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246413" ref_strand="+" ref_description="SGN-E246413 [cLEF-52-E2]">
      <seq>ggtggatgagtcgccgaatgttccgattaggctttggatttgtgggtatgctttgcagtgtgtggtgcatgtggtgcttgtgtggttggaatataggaggaggagtttgcaaggaggaactgatgtagagggaaatgatggtgagggtggtgaagagaggaacggggttttgggtattggtaatcagtcaagttttgctaaacgatgtgaatatatgaatacaatggggtcacttctttggtggataattggcttttactggatagtctctggtggtgaaattcttttacagaatgctccacatttatactggttggcagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcgtccgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggtgctggtaggatggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="23344" stop="28874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23644" g_stop="23835" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23836" i_stop="27253" i_length="3418">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27254" g_stop="27373" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="312" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28475" g_stop="28574" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="542" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E246413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23644" e_stop="23835"/>
          <exon e_start="27254" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAGGTAAGGTTCATTTCTTGTTTGATAAATTTCAGATTTTTCTTTTGTGTAGCATGATGTTGGTAGTGTTACTAATAGTTACATATAAAACAACAACGAACTCACTGCAATTCCACAAGTGGGGTCGGGAGAGACTAGGGAGGATAAGATATATCGTATTACTAGTAGTTACCTATAAAACAATAACAAACTCACTGTAATTCCGCAAATGGGGTCGGGAGAGTAAGATGTATCGTATTACTAATAGTTACATATAATAAAACAACGAACTCACTGTAATTCCGCAAGTGGGGTCGGGAGAGTCTAGGGAGGGTAAGATGTGACGAGCCTTACTCCCTACCGGCAATGTGAACGAGCTCATGCGGGAGGAGTTAGTTTCACTTCTAATACAATAAACCAAGTGTTGTCCAACAAGTAGGCTCTCGGGAGTCTAGGGAGGATAAGATGTATGCAGCCCTACCTTTATGAGGCAGAGTGATTGTTTTTGATTGACCCTTGCTAACTTCCCTCCTTTATCCAAGCTTGGGACTAGCAGTGTGAACGAGTTCACATGGATGGAGTTAGTCTCACTTCTAATATAGCTAAGTTAAATTACGTTTAAGCTCGTCGCTCATGAGACGGTACTATGTTTGGAAGGCTATAAAGGGACTATATAGACCTAAAATCACATGAGGGGAGGTTTTCTCTTAAAAGAACTAAGGCTCTTGAAATTCATCTGAACTTATGAACATAGTGGAAACGAATGGATTGGAAGAATTGATTTAAATAGTTGGTTTAAGGATATATTGGTATAATGTATAAAACATGAAATGATGAAGGAAGTGGTGGATTCTCCATTCTTGTTAAGCCATATTGTTGGTATCAAACGAATATTGTACTTTCATGGAATGCACGTGCTTTAAGCCTCTTCCGTCAATCTTCTAAGTACCTTTAGCCTCAAAATGGCTAATGGTGACGGCCACGCTAGCATATGATAAAGTTAGCAAAATGCTCAGCAACTCCTTAAAAGTACTTTACAAAATTTTGTAATTGCAAAACTAGACGACGAGTACAATTCCATCTCTTGCTTAGGCTCCAATAACCATTGAAATCTTCATCTTCTCTACAATTCCATCTCTTGCTTAGGCTCCAATAACCATTGAAATCTTCATCTTCTCTTCTGATCACTGATATGATCTTCTCCTTCTCTTAAAGGAACTATTTGAACTTCAGATGATGAGTTTACAAAAGAAACCTAATGCCAGTGCTCTCTGTAAGAGGCTACTATCTTGGCATTTTCTTCCTCTTTCCCCTACAAATATTTTGTAATCCATTTTGAAGACTTGCATGTTTACTCTCTCTAATTTTTCTATCATAGTACTTGAGATGTACTCGATAAGTTTGCTTTGTATGTAGTGTTTATGTACATAGAAATAAGTACTAAATTTGAACCAAAGGAAAAGTTTTGATTGATCAAATGACCTATGGTAATTAATTGTGTTTTAGAAGCTGAAATCTTGATAACTGCTATATACTTCAAAGGCAGGAACAAGTTTACTTAACAGAATGGCTAGACGGAATATTTTAAAGCTTATATGTTTCACATTGATTCAAAGGCAATTAACTTTGTTAAGACTTTGTATGAGAGGGATTTATGGTTAGTATGAGAAATATAAGAAAAGAATACTATTGAATTGTTGTTGTTTACATTATTACATTGAGACCCTATTTATAGACACTAGAATACAATCCTTTACCAAGTAGGATACTATTTACTATTCCTATTCTAAATAGGATTTTATAAACCTATTCCTATTCTAATAGGATTGTGTAATCCTATTCCTATTCTAATAAGATTGTATAAACCTATTCCTATTCTAAACAATTAGATTTTGAGAGGGCATTGATTAGTGATTACAAGGCTGCCTGCCGTAGTGTACTTGTATGCCTCACCAACTGCTATATATTGGAAGACATGCACACTTTTTATATTCAACCTAGTAAATGGAACTTAATGAGATAATATCGACTGGATCTCATGGATTTTGTTTGACCCATATAGGCATTGAAAGATCCGTATATCAGAGAAGGATAATATTCTTCCAAGAAAAGGAGCAAAAGAGAGCCCAAACTTATGGAATTTTTTTATAGATTTCTTTATAGGTTTAGGAGATGAAAAATTTACTGAGAATAATGTATCTTTGCTCTGTTATTGGTTAGAGTTCATGGTAGTATCATGTCAGTGATTCTTACCGTTTGGATCAAGTTAATCTAAGTAAAAGTAGTGTTGCAGGTCTTCATTCCATGCTGCTAAGCAATTTTTCTTATCTTCTGCATGACCTTTTGATATTCAATGGATAAGATACACACACATACATATAAACTGTAGAGCATATACAAATATGAATGTATGTATTTATGTATAAGAAGCTTTTATGTAATTCATTTGACAGACAAAATTTATATAACCCGGAATTTGTGCCGCCAAAGAAGCAGATGAAACTTCAAGTGACCTATCTGTGCTAAGTAAATTTTAAATTTTCTTTCTCATTAAAAAGACATGTGGCAGTTGAGTAACAAATCAGGCTTGACACTGTAAAGATATACCATTTTCTGGAATTAAATCAATATAACATTGTTTCAGACGCTTATTCTAAGAAGAAACTGTTATTCAATTTGATTGGTTGTAAGTTTTTGTACTTGTAAAGGACAGATGAGAAATCACCTAGTGTTTTTGTCTCTATTGGGATTTGAACCAGAGATCTCATGGTTTTCAACCTACTTCATTGACCACGAGGCCACACTTCTTGGAACTAGAAAGTACGACACAAATTATTACTGATTCAGAAGTATAATGTTATCTTCTTTCTAGAATGTTACGAATACAAAACGAATGAGGTTTAGTAGGGGAAGTTCTATGACATCTTATTATGAAATCTTTCCAGGAATTTTACTTTTAAGGCATTCAAACTATTCTTTTGCAGATATTCCAACTTATACTCAATAGTGTATCCAAATTTAATTTTATTGATCTGTGTGCATGAGATATGATATACACCTGATCCACCTATTCATAACTTATGCATTACAGCTAACATCACCTTGTAGGTTTCTGACCATCTTTTACAGTATGATTGATCTGCTATACACCTATACGTAGTAGTAGATTATTACTGAGTTAGAATTGATATTTATTACTTTGCAAGAATAAACTACTGCTTAAAGAAGCGTGGAAATTATGTCATTCAACTTGGCTATGTTATTAGCACCTTTTAATTCTCTGGATAAACAAATAGATACATGTATTCTCATCATTTGACCGACAGTTTTAAATGTCTTTTGAGCATTGAAAAAAATATGTTTTCTTTTTTCTTGGTTAATGCTTGCGCTATAGAGGTGACAAATTTAATTTATTGACTCCTTTCCATTTTGAACATTGCAGTTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTAC</genome_strand>
        <mrna_strand>GGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287817" ref_strand="+" ref_description="SGN-E287817 [cLES-19-H15]">
      <seq>gagtttgcaaggaggaactgatgtagagggaaatgatggtgagggtggtgaagagaggaacggggttttgggtattggtaatcagtcaagttttgctaaacgatgtgaatatatgaatacaatggggtcacttctttggtggataattggcttttactggatagtctctggtggtgaaattcttttacagaatgctccacatttatactggttggcagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcgtccgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggtgctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgcatatgtcttacctcgtacgaggatggggcagaactccatgctctcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="23446" stop="29301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23746" g_stop="23835" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23836" i_stop="27253" i_length="3418">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27254" g_stop="27373" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="210" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="340" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="499" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28944" g_stop="29001" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="557" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E287817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23746" e_stop="23835"/>
          <exon e_start="27254" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAGGTAAGGTTCATTTCTTGTTTGATAAATTTCAGATTTTTCTTTTGTGTAGCATGATGTTGGTAGTGTTACTAATAGTTACATATAAAACAACAACGAACTCACTGCAATTCCACAAGTGGGGTCGGGAGAGACTAGGGAGGATAAGATATATCGTATTACTAGTAGTTACCTATAAAACAATAACAAACTCACTGTAATTCCGCAAATGGGGTCGGGAGAGTAAGATGTATCGTATTACTAATAGTTACATATAATAAAACAACGAACTCACTGTAATTCCGCAAGTGGGGTCGGGAGAGTCTAGGGAGGGTAAGATGTGACGAGCCTTACTCCCTACCGGCAATGTGAACGAGCTCATGCGGGAGGAGTTAGTTTCACTTCTAATACAATAAACCAAGTGTTGTCCAACAAGTAGGCTCTCGGGAGTCTAGGGAGGATAAGATGTATGCAGCCCTACCTTTATGAGGCAGAGTGATTGTTTTTGATTGACCCTTGCTAACTTCCCTCCTTTATCCAAGCTTGGGACTAGCAGTGTGAACGAGTTCACATGGATGGAGTTAGTCTCACTTCTAATATAGCTAAGTTAAATTACGTTTAAGCTCGTCGCTCATGAGACGGTACTATGTTTGGAAGGCTATAAAGGGACTATATAGACCTAAAATCACATGAGGGGAGGTTTTCTCTTAAAAGAACTAAGGCTCTTGAAATTCATCTGAACTTATGAACATAGTGGAAACGAATGGATTGGAAGAATTGATTTAAATAGTTGGTTTAAGGATATATTGGTATAATGTATAAAACATGAAATGATGAAGGAAGTGGTGGATTCTCCATTCTTGTTAAGCCATATTGTTGGTATCAAACGAATATTGTACTTTCATGGAATGCACGTGCTTTAAGCCTCTTCCGTCAATCTTCTAAGTACCTTTAGCCTCAAAATGGCTAATGGTGACGGCCACGCTAGCATATGATAAAGTTAGCAAAATGCTCAGCAACTCCTTAAAAGTACTTTACAAAATTTTGTAATTGCAAAACTAGACGACGAGTACAATTCCATCTCTTGCTTAGGCTCCAATAACCATTGAAATCTTCATCTTCTCTACAATTCCATCTCTTGCTTAGGCTCCAATAACCATTGAAATCTTCATCTTCTCTTCTGATCACTGATATGATCTTCTCCTTCTCTTAAAGGAACTATTTGAACTTCAGATGATGAGTTTACAAAAGAAACCTAATGCCAGTGCTCTCTGTAAGAGGCTACTATCTTGGCATTTTCTTCCTCTTTCCCCTACAAATATTTTGTAATCCATTTTGAAGACTTGCATGTTTACTCTCTCTAATTTTTCTATCATAGTACTTGAGATGTACTCGATAAGTTTGCTTTGTATGTAGTGTTTATGTACATAGAAATAAGTACTAAATTTGAACCAAAGGAAAAGTTTTGATTGATCAAATGACCTATGGTAATTAATTGTGTTTTAGAAGCTGAAATCTTGATAACTGCTATATACTTCAAAGGCAGGAACAAGTTTACTTAACAGAATGGCTAGACGGAATATTTTAAAGCTTATATGTTTCACATTGATTCAAAGGCAATTAACTTTGTTAAGACTTTGTATGAGAGGGATTTATGGTTAGTATGAGAAATATAAGAAAAGAATACTATTGAATTGTTGTTGTTTACATTATTACATTGAGACCCTATTTATAGACACTAGAATACAATCCTTTACCAAGTAGGATACTATTTACTATTCCTATTCTAAATAGGATTTTATAAACCTATTCCTATTCTAATAGGATTGTGTAATCCTATTCCTATTCTAATAAGATTGTATAAACCTATTCCTATTCTAAACAATTAGATTTTGAGAGGGCATTGATTAGTGATTACAAGGCTGCCTGCCGTAGTGTACTTGTATGCCTCACCAACTGCTATATATTGGAAGACATGCACACTTTTTATATTCAACCTAGTAAATGGAACTTAATGAGATAATATCGACTGGATCTCATGGATTTTGTTTGACCCATATAGGCATTGAAAGATCCGTATATCAGAGAAGGATAATATTCTTCCAAGAAAAGGAGCAAAAGAGAGCCCAAACTTATGGAATTTTTTTATAGATTTCTTTATAGGTTTAGGAGATGAAAAATTTACTGAGAATAATGTATCTTTGCTCTGTTATTGGTTAGAGTTCATGGTAGTATCATGTCAGTGATTCTTACCGTTTGGATCAAGTTAATCTAAGTAAAAGTAGTGTTGCAGGTCTTCATTCCATGCTGCTAAGCAATTTTTCTTATCTTCTGCATGACCTTTTGATATTCAATGGATAAGATACACACACATACATATAAACTGTAGAGCATATACAAATATGAATGTATGTATTTATGTATAAGAAGCTTTTATGTAATTCATTTGACAGACAAAATTTATATAACCCGGAATTTGTGCCGCCAAAGAAGCAGATGAAACTTCAAGTGACCTATCTGTGCTAAGTAAATTTTAAATTTTCTTTCTCATTAAAAAGACATGTGGCAGTTGAGTAACAAATCAGGCTTGACACTGTAAAGATATACCATTTTCTGGAATTAAATCAATATAACATTGTTTCAGACGCTTATTCTAAGAAGAAACTGTTATTCAATTTGATTGGTTGTAAGTTTTTGTACTTGTAAAGGACAGATGAGAAATCACCTAGTGTTTTTGTCTCTATTGGGATTTGAACCAGAGATCTCATGGTTTTCAACCTACTTCATTGACCACGAGGCCACACTTCTTGGAACTAGAAAGTACGACACAAATTATTACTGATTCAGAAGTATAATGTTATCTTCTTTCTAGAATGTTACGAATACAAAACGAATGAGGTTTAGTAGGGGAAGTTCTATGACATCTTATTATGAAATCTTTCCAGGAATTTTACTTTTAAGGCATTCAAACTATTCTTTTGCAGATATTCCAACTTATACTCAATAGTGTATCCAAATTTAATTTTATTGATCTGTGTGCATGAGATATGATATACACCTGATCCACCTATTCATAACTTATGCATTACAGCTAACATCACCTTGTAGGTTTCTGACCATCTTTTACAGTATGATTGATCTGCTATACACCTATACGTAGTAGTAGATTATTACTGAGTTAGAATTGATATTTATTACTTTGCAAGAATAAACTACTGCTTAAAGAAGCGTGGAAATTATGTCATTCAACTTGGCTATGTTATTAGCACCTTTTAATTCTCTGGATAAACAAATAGATACATGTATTCTCATCATTTGACCGACAGTTTTAAATGTCTTTTGAGCATTGAAAAAAATATGTTTTCTTTTTTCTTGGTTAATGCTTGCGCTATAGAGGTGACAAATTTAATTTATTGACTCCTTTCCATTTTGAACATTGCAGTTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCT</genome_strand>
        <mrna_strand>GAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310486" ref_strand="+" ref_description="SGN-E310486 [cTOA-9-E5]">
      <seq>aggaacggggttttgggtattggtaatcagtcaagttttgctaaacgatgtgaatatatgaatacaatggggtcacttctttggtggataattggcttttactggatagtctctggtggtgaaattcttttacagaatgctccacatttatactggttggcagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcgtccgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggtgctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgcatatgtcttacctcgtacgaggatggggcagaactccatgctctaccctgtaatcatcattttcactccacctgcatcgtgaaatggcttaaaatgaacgctacatgtccactatgcaagtacaacatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="23501" stop="29383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23801" g_stop="23835" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23836" i_stop="27253" i_length="3418">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27254" g_stop="27373" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="155" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="285" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="444" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28944" g_stop="29083" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="584" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E310486" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23801" e_stop="23835"/>
          <exon e_start="27254" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAGGTAAGGTTCATTTCTTGTTTGATAAATTTCAGATTTTTCTTTTGTGTAGCATGATGTTGGTAGTGTTACTAATAGTTACATATAAAACAACAACGAACTCACTGCAATTCCACAAGTGGGGTCGGGAGAGACTAGGGAGGATAAGATATATCGTATTACTAGTAGTTACCTATAAAACAATAACAAACTCACTGTAATTCCGCAAATGGGGTCGGGAGAGTAAGATGTATCGTATTACTAATAGTTACATATAATAAAACAACGAACTCACTGTAATTCCGCAAGTGGGGTCGGGAGAGTCTAGGGAGGGTAAGATGTGACGAGCCTTACTCCCTACCGGCAATGTGAACGAGCTCATGCGGGAGGAGTTAGTTTCACTTCTAATACAATAAACCAAGTGTTGTCCAACAAGTAGGCTCTCGGGAGTCTAGGGAGGATAAGATGTATGCAGCCCTACCTTTATGAGGCAGAGTGATTGTTTTTGATTGACCCTTGCTAACTTCCCTCCTTTATCCAAGCTTGGGACTAGCAGTGTGAACGAGTTCACATGGATGGAGTTAGTCTCACTTCTAATATAGCTAAGTTAAATTACGTTTAAGCTCGTCGCTCATGAGACGGTACTATGTTTGGAAGGCTATAAAGGGACTATATAGACCTAAAATCACATGAGGGGAGGTTTTCTCTTAAAAGAACTAAGGCTCTTGAAATTCATCTGAACTTATGAACATAGTGGAAACGAATGGATTGGAAGAATTGATTTAAATAGTTGGTTTAAGGATATATTGGTATAATGTATAAAACATGAAATGATGAAGGAAGTGGTGGATTCTCCATTCTTGTTAAGCCATATTGTTGGTATCAAACGAATATTGTACTTTCATGGAATGCACGTGCTTTAAGCCTCTTCCGTCAATCTTCTAAGTACCTTTAGCCTCAAAATGGCTAATGGTGACGGCCACGCTAGCATATGATAAAGTTAGCAAAATGCTCAGCAACTCCTTAAAAGTACTTTACAAAATTTTGTAATTGCAAAACTAGACGACGAGTACAATTCCATCTCTTGCTTAGGCTCCAATAACCATTGAAATCTTCATCTTCTCTACAATTCCATCTCTTGCTTAGGCTCCAATAACCATTGAAATCTTCATCTTCTCTTCTGATCACTGATATGATCTTCTCCTTCTCTTAAAGGAACTATTTGAACTTCAGATGATGAGTTTACAAAAGAAACCTAATGCCAGTGCTCTCTGTAAGAGGCTACTATCTTGGCATTTTCTTCCTCTTTCCCCTACAAATATTTTGTAATCCATTTTGAAGACTTGCATGTTTACTCTCTCTAATTTTTCTATCATAGTACTTGAGATGTACTCGATAAGTTTGCTTTGTATGTAGTGTTTATGTACATAGAAATAAGTACTAAATTTGAACCAAAGGAAAAGTTTTGATTGATCAAATGACCTATGGTAATTAATTGTGTTTTAGAAGCTGAAATCTTGATAACTGCTATATACTTCAAAGGCAGGAACAAGTTTACTTAACAGAATGGCTAGACGGAATATTTTAAAGCTTATATGTTTCACATTGATTCAAAGGCAATTAACTTTGTTAAGACTTTGTATGAGAGGGATTTATGGTTAGTATGAGAAATATAAGAAAAGAATACTATTGAATTGTTGTTGTTTACATTATTACATTGAGACCCTATTTATAGACACTAGAATACAATCCTTTACCAAGTAGGATACTATTTACTATTCCTATTCTAAATAGGATTTTATAAACCTATTCCTATTCTAATAGGATTGTGTAATCCTATTCCTATTCTAATAAGATTGTATAAACCTATTCCTATTCTAAACAATTAGATTTTGAGAGGGCATTGATTAGTGATTACAAGGCTGCCTGCCGTAGTGTACTTGTATGCCTCACCAACTGCTATATATTGGAAGACATGCACACTTTTTATATTCAACCTAGTAAATGGAACTTAATGAGATAATATCGACTGGATCTCATGGATTTTGTTTGACCCATATAGGCATTGAAAGATCCGTATATCAGAGAAGGATAATATTCTTCCAAGAAAAGGAGCAAAAGAGAGCCCAAACTTATGGAATTTTTTTATAGATTTCTTTATAGGTTTAGGAGATGAAAAATTTACTGAGAATAATGTATCTTTGCTCTGTTATTGGTTAGAGTTCATGGTAGTATCATGTCAGTGATTCTTACCGTTTGGATCAAGTTAATCTAAGTAAAAGTAGTGTTGCAGGTCTTCATTCCATGCTGCTAAGCAATTTTTCTTATCTTCTGCATGACCTTTTGATATTCAATGGATAAGATACACACACATACATATAAACTGTAGAGCATATACAAATATGAATGTATGTATTTATGTATAAGAAGCTTTTATGTAATTCATTTGACAGACAAAATTTATATAACCCGGAATTTGTGCCGCCAAAGAAGCAGATGAAACTTCAAGTGACCTATCTGTGCTAAGTAAATTTTAAATTTTCTTTCTCATTAAAAAGACATGTGGCAGTTGAGTAACAAATCAGGCTTGACACTGTAAAGATATACCATTTTCTGGAATTAAATCAATATAACATTGTTTCAGACGCTTATTCTAAGAAGAAACTGTTATTCAATTTGATTGGTTGTAAGTTTTTGTACTTGTAAAGGACAGATGAGAAATCACCTAGTGTTTTTGTCTCTATTGGGATTTGAACCAGAGATCTCATGGTTTTCAACCTACTTCATTGACCACGAGGCCACACTTCTTGGAACTAGAAAGTACGACACAAATTATTACTGATTCAGAAGTATAATGTTATCTTCTTTCTAGAATGTTACGAATACAAAACGAATGAGGTTTAGTAGGGGAAGTTCTATGACATCTTATTATGAAATCTTTCCAGGAATTTTACTTTTAAGGCATTCAAACTATTCTTTTGCAGATATTCCAACTTATACTCAATAGTGTATCCAAATTTAATTTTATTGATCTGTGTGCATGAGATATGATATACACCTGATCCACCTATTCATAACTTATGCATTACAGCTAACATCACCTTGTAGGTTTCTGACCATCTTTTACAGTATGATTGATCTGCTATACACCTATACGTAGTAGTAGATTATTACTGAGTTAGAATTGATATTTATTACTTTGCAAGAATAAACTACTGCTTAAAGAAGCGTGGAAATTATGTCATTCAACTTGGCTATGTTATTAGCACCTTTTAATTCTCTGGATAAACAAATAGATACATGTATTCTCATCATTTGACCGACAGTTTTAAATGTCTTTTGAGCATTGAAAAAAATATGTTTTCTTTTTTCTTGGTTAATGCTTGCGCTATAGAGGTGACAAATTTAATTTATTGACTCCTTTCCATTTTGAACATTGCAGTTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCT</genome_strand>
        <mrna_strand>AGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTACCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424907" ref_strand="+" ref_description="SGN-E424907 [STM-44-C18]">
      <seq>taatcagtcaagttttgctaaacgatgtgaatatatgaatacaatggggtcacttctttggtggatagttggcttttactggatagtctctggtggtgaaattcttttacagaatgctccacatttatactggttggcagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcatctgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggagctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgtatatgtcttacctcgtacgaggatggggcagaactccatgctctcccctgtaatcatcatttccactccacctgcatcgtgaaatggcttaagatgaacgcgacatgtccactatgcaagtacaacatcctgaaggggaatgatcangtttaaagcagaggagaatgaaaaacattgtacattgtttcgggttattaaagccacttatggaagcttgaacactactcgctgtatcccatatcagaacagaaatctgcttttcaactagttgagcttcctctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="26944" stop="29535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27254" g_stop="27373" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="132" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="262" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="421" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28944" g_stop="29235" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="714" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E424907" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27254" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAG-GGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAAT-CCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCAT</genome_strand>
        <mrna_strand>TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAGTTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCATCTGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGAGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGTATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTCCACTCCACCTGCATCGTGAAATGGCTTAAGATGAACGCGACATGTCCACTATGCAAGTACAACATCCTGAAGGGGAATGATCANGTTTAAAGCAGAGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTG-AACACTACTCGCTGTATCCCATATCAGAACAGAAATCTGCTTTTCAACTAGTTGAGCTTCCTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453484" ref_strand="+" ref_description="SGN-E453484 [cSTS-20-M5]">
      <seq>taatcagtcaagttttgctaaacgatgtgaatatatgaatacaatggggtcacttctttggtggatagttggcttttactggatagtctctggtggtgaaattcttttacagaatgctccacatttatactggttggcagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcatctgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggagctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgtatatgtcttacctcgtacgaggatggggcagaactccatgctctcccctgtaatcatcatttccactccacctgcatcgtgaaatggcttaagatgaacgcgacatgtccactatgcaagtacaacatcctgaaggggaatgatcaggtttaaagcagaggagaatgaaaaacattgtacattgtttcgggttattaaagccacttatggaagcttgaaacactactcgctgtatcccatatcagaacagaaatctgctttccaactagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="26944" stop="29520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27254" g_stop="27373" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="132" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="262" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="421" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28944" g_stop="29222" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="702" r_length="281" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E453484" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27254" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAG-GGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAAT-CCATATCAGAACAGAAATCTGCTTTCCAACTAGTCA</genome_strand>
        <mrna_strand>TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAGTTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCATCTGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGAGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGTATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTCCACTCCACCTGCATCGTGAAATGGCTTAAGATGAACGCGACATGTCCACTATGCAAGTACAACATCCTGAAGGGGAATGATCAGGTTTAAAGCAGAGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTCGCTGTATCCCATATCAGAACAGAAATCTGCTTTCCAACTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619352" ref_strand="+" ref_description="SGN-E619352 [70040]">
      <seq>agctaaacgatgtgaatatatgaatacaatggggtcacttctttggtggatagttggcttttactggatagtctctggtggtgaaattcttttacagaatgctccacatttatactggttggcagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcatctgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggagctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgtatatgtcttacctcgtacgaggatggggcagaactccatgctctcccctgtaatcatcatttccactccacctgcatcgtgaaatggcttaagatgaacgcgacatgtccactatgcaagtacaacatcctgaaggggaatgatcaggtttaaagcagaggagaatgacacaccattgtacattgtctcgggttattaaagccacttatggaagcttgaaacactactcgtgtatccatatcagaacagaaatctgctttcaactagtttgagcttctctcatgttcgttagcatattgaggatcctctccggaagtgaattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="26958" stop="29520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27257" g_stop="27373" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="247" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="406" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28944" g_stop="29276" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="740" r_length="334" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E619352" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27257" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAG-GGAGAATGA-AAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAG-TCAAGCTTCCTCTCATGTTCGCTTAGCATATTGA-GATCTTCT-CTGTAGTGAATCGTC</genome_strand>
        <mrna_strand>AGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAGTTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCATCTGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGAGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGTATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTCCACTCCACCTGCATCGTGAAATGGCTTAAGATGAACGCGACATGTCCACTATGCAAGTACAACATCCTGAAGGGGAATGATCAGGTTTAAAGCAGAGGAGAATGACACACCATTGTACATTGTCTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTCG-TGTATCCATATCAGAACAGAAATCTGCTTT-CAACTAGTTTGAGCTT-CTCTCATGTTCG-TTAGCATATTGAGGATCCTCTCCGGAAGTGAATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210173" ref_strand="+" ref_description="SGN-E210173 [cLEC-40-A5]">
      <seq>gtgaatatatgaatacaatggggtcacttctttggtggataattggcttttactggatagtctctggtggtgaaattcttttacagaatgctccacatttatactggttggcagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgctgctgcttgccttgcataattgcagtactctatgcagagggtcaggaaggtgcgtccgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaagtgctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgcatatgtcttacctcgtacgatgatggcgcagaactccatgctctcccctgtaatcatcattctcactccacctgcatcgtgaaatggcttaaaatgaacgctacatgtccactatgcaagtacaacatcctgaacggaaatgatcaggtttaaagcagggagaatgagaaacattgtacattgtttcaggttattaaagccacttatggaagcttgaaacactacttgctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="26968" stop="29487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27268" g_stop="27373" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="236" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="395" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28944" g_stop="29187" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="639" r_length="244" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E210173" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27268" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAGGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATC</genome_strand>
        <mrna_strand>GTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGCTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGAGGGTCAG................................................................................GAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAAGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGCATATGTCTTACCTCGTACGATGATGGCGCAGAACTCCATGCTCTCCCCTGTAATCATCATTCTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAACGGAAATGATCAGGTTTAAAGCAGGGAGAATGAGAAACATTGTACATTGTTTCAGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424908" ref_strand="-" ref_description="SGN-E424908 [STM-44-C18]">
      <seq>gtggcttttactggatagtctctgtggtgaaatcttttacagaatgctccacatttatactggttggcagtngtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcatctgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggagctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgtatatgtcttacctcgtacgaggatggggcagaactccatgctctcccctgtaatcatcatttccactccacctgcatcgtgaaatggcttaagatgaacgcgacatgtccactatgcaagtacaacatcctgaaggggaatgatcaggtttaaagcagaggagaatgaaaaacattgtacattgtttcgggttattaaagccacttatggaagcttgaaacactactcgctgtatcccatatcagaacagaaatctgctttccaactagttgagcttcctctcatgttcgcttagcatattgagatcttctccgtagtgaattgtcttctgttatagaaaaaatgtagcaccccgcgaaaaattaaaaacgaagaagggtttgtccttcccccatctcatgtaaattatctttggttccattgcttaacaataggtagcgtgaaatccaactcttgaagtaaaaaaagatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="27011" stop="29679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27310" g_stop="27373" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="192" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="351" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28944" g_stop="29386" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="794" r_length="443" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E424908" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424908" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27310" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAG-GGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAAT-CCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTTGGTCCTTCCCCCCAGCTCATGTAAATTATCTTTGGTTCCATTTGTTTCCAATAG</genome_strand>
        <mrna_strand>GTGGCTTTTACTGGATAGTCTCT-GTGGTGAAA-TCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTNGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCATCTGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGAGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGTATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTCCACTCCACCTGCATCGTGAAATGGCTTAAGATGAACGCGACATGTCCACTATGCAAGTACAACATCCTGAAGGGGAATGATCAGGTTTAAAGCAGAGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTCGCTGTATCCCATATCAGAACAGAAATCTGCTTTCCAACTAGTTGAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCCGTAGTGAATTGTCTTCTGTTA-TAGAAAAAATGTAGCACCCCGCGAAAAATTAAAAACGAAGAAGGGTTTGTCCTT-CCCCCATCTCATGTAAATTATCTTTGGTTCCATTGCTTAACAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603529" ref_strand="-" ref_description="SGN-E603529 [56621]">
      <seq>ggtgaaatttcttttacagaatgctccacatttatactggttgcaagttgtatttctggcattcgatgtattctttgccatcttttgtgttgctttggcatgtctgataggagttgctctctgttgctgcttgccttgcataattgcagtactctatgcagtgggtcaggaaggtgcatctgaggaagatctcagagttctccccaagtatagattccatatttgcaagaatgaggagaaaccaagggtaggagctggtaggatggtaccaattgagacaagcagcggatacctggccactgagcgtattcttttacctgaagatgcagaatgttgtatatgtcttacctcgtacgaggatggggcagaactccatgctctcccctgtaatcatcatttccactccacctgcatcgtgaaatggcttaagatgaacgcgacatgtccactatgcaagtacaacatcctgaaggggaatgatcaggtttaaagcagaggagaatgaaaaacattgtacattgtttcgggttattaaagccacttatggaagcttgaaacactactcgctgtatcccatatcagaacagaaatctgctttccaactagttgagcttcctctcatgttcgcttagcatattgagatcttctccgtagtgaattgtcttctgttatagaaaaaatgtagcaccccgcgaaaaattaaaaacgaagaagggtttgtccttcccccatctcatgtaaattatctttggttccattgcttaacaataggtatacaggatccaactcttgtaagtatatgctattttcttgtgtgttgttttatgtccagtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="27036" stop="29752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27336" g_stop="27373" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.868" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28265" g_stop="28394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="169" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28475" g_stop="28633" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="328" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28944" g_stop="29452" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="838" r_length="510" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E603529" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603529" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27336" e_stop="27373"/>
          <exon e_start="28265" e_stop="28394"/>
          <exon e_start="28475" e_stop="28633"/>
          <exon e_start="28944" e_stop="29452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAA-TTCTTTTACAGAATGCTCCACATTTATACTGGTATGTCAAGATCTACTATCACTTCAAGCCTTTGAGTTATAATTTGTGTTAAAAGTAGTCTTACATTATAAAACTTTTATGTTTAGTTGATAGTCCTCTATGAGACTTGTATTTGTTATCTCTACTATTTTCAAATTTTGATTACAAAAATGACGATCCCCTTTAGGAATTCTCCCCTACATTTGTAGGAGTAGTCATTTTAGGACAGCTCAAAAATGTAATATTGGTCATAGCAATGATGGCATAACCTGTTACATATAGGCTCTAATTGAGTTTTTCTTAATTTCAAATTCCTTTAAACATACTAGTAATACTTGTACAGCTCAAAACAATTCCTTTAAATATACTAGTAGTACTTGCATAGCTCAAATAGACAACAGTTCTAAATCTTTATGATATATTTGTCTAAATGCAACTCTGATCTTTTCACATTTAAGGAAATGGTAGTAGTGGAAAAGATGTTATTGTTTTAGTTCATGAATTGGCCTTTTTCATTATTGTTGTTAATAACAATATAGAAGGACCAAAGATTGAAAAATAGAATTCGTTTTTTAATCTAGTTATCTAGAATTTTATATGTCCCTTAAAAGATTAAATTACTAGATTTGTTTGGTTCAGCTGCCTTTCATGTTTATGTTGCGGTCTAGCTGAATTTTGCTTAGATCTACTATCTCATTACATCTCAGAGATAGATAGAGAGGTAGGAATTTCTCGAACGAACCACACTTCTTTGTATACGTCCGTATATAAGTTGTCATCTCAAGAGAAGTTGTGGATTATTATTATCTACGCTCTCCCTTTAGAATATTGTTTCTGTTGTTTCCTTTTCTTTTCTTAAATGTTCGTGATCACCAGACAGTCATGTTTGATCACTGATGTAAAGTGATGCAGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGTAAGAGACACACACTATAAATAATTACAGGCCAGCTACTTGATATGTTTCTGGTATGATCTCTTGCCTGTAATATATAGGAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGTAAGTTAATTTTTGCGTGTCTAAAAATGCTTAAAGCCAATTATCATTTTCTTTCTCCTTTATTTTGATCCCAATAGTCTGTCTATATTGGAATAAAACTGTTTCATCGTATGCATATTCCACAACCTTACTTTGGTGTTAACATTTAACTCTACGGTACTGCAATGGTGCTAAGTGAACTTTATTTATTCACTGTTTCAGTTAGAATCCGCATTATGTGACACATGCTGAATAGTGATAGATTTAGTAGTATTTCTGAATTATTATTTGTGATAAAATAGTTACCAATATCTCAACTTTTGTTTGCTAGGAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAG-GGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAAT-CCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTTGGTCCTTCCCCCCAGCTCATGTAAATTATCTTTGGTTCCATTTGTTTCCAATAGGTATACAGGATCCAACTCTTGTAAGTATATGCTATTTTCTTGTGTG-TGGTTTATGTCCAGTTTTAC</genome_strand>
        <mrna_strand>GGTGAAATTTCTTTTACAGAATGCTCCACATTTATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG................................................................................GAAGGTGCATCTGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGAGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA......................................................................................................................................................................................................................................................................................................................GAATGTTGTATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTCCACTCCACCTGCATCGTGAAATGGCTTAAGATGAACGCGACATGTCCACTATGCAAGTACAACATCCTGAAGGGGAATGATCAGGTTTAAAGCAGAGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTCGCTGTATCCCATATCAGAACAGAAATCTGCTTTCCAACTAGTTGAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCCGTAGTGAATTGTCTTCTGTTA-TAGAAAAAATGTAGCACCCCGCGAAAAATTAAAAACGAAGAAGGGTTTGTCCTT-CCCCCATCTCATGTAAATTATCTTTGGTTCCATTGCTTAACAATAGGTATACAGGATCCAACTCTTGTAAGTATATGCTATTTTCTTGTGTGTTGTTTTATGTCCAGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423549" ref_strand="+" ref_description="SGN-E423549 [STM-42-M23]">
      <seq>tagcatatacttacaagagttggatcctgtatacctattgttaagcaattgaaccaaagataatttacatgagatgggggaaggacaaacccttcttcgtttttaatttttcgcggggtgctacattttttctataacagaagacaattcactacggagaagatctcaatatgctaagcgaacatgagaggaagctcaactagttggaaagcagatttctgttctgatatgggatacagcgagtagtgtttcaagcttccataagtggctttaataacccgaaacaatgtacaatgtttttcattctcctctgctttaaacctgatcattccccttcaggatgttgtacttgcatagtggacatgtcgcgttcatcttaagccatttcacgatgcaggtggagtggaaatgatgattacaggggagagcatggagttctgccccatcctcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="29720" stop="28668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29420" g_stop="28968" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-E423549" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29420" e_stop="28968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCATATACTTACAAGAGTTGGATCCTGTATACCTATTGGAAACAAATGGAACCAAAGATAATTTACATGAGCTGGGGGGAAGGACCAACTCTTCTTCGTTTTTAATTCTTCGCGGGGTGCTACATTTTTTTTAATCACAGAAGACGATTCACTACAGAGAAGATCTCAATATGCTAAGCGAACATGAGAGGAAGCTTGACTAGTTGGAAAGCAGATTTCTGTTCTGATAT-GGATTTAGCAAGTAGTGTTTCAAGCTTCCATAAGTGGCTTTAATAACCCGAAACAATGTACAATGTTTTTCATTCTCC-CTGCTTTAAACCTGATCATTTCCCTTCAGGATGTTGTACTTGCATAGTGGACATGTAGCGTTCATTTTAAGCCATTTCACGATGCAGGTGGAGTGAAAATGATGATTACAGGGGAGAGCATGGAGTTCTGCCCCATCCTCGTA</genome_strand>
        <mrna_strand>TAGCATATACTTACAAGAGTTGGATCCTGTATACCTATTGTTAAGCAATTGAACCAAAGATAATTTACATGAGAT-GGGGGAAGGACAAACCCTTCTTCGTTTTTAATTTTTCGCGGGGTGCTACATTTTTTCT-ATAACAGAAGACAATTCACTACGGAGAAGATCTCAATATGCTAAGCGAACATGAGAGGAAGCTCAACTAGTTGGAAAGCAGATTTCTGTTCTGATATGGGATACAGCGAGTAGTGTTTCAAGCTTCCATAAGTGGCTTTAATAACCCGAAACAATGTACAATGTTTTTCATTCTCCTCTGCTTTAAACCTGATCATTCCCCTTCAGGATGTTGTACTTGCATAGTGGACATGTCGCGTTCATCTTAAGCCATTTCACGATGCAGGTGGAGTGGAAATGATGATTACAGGGGAGAGCATGGAGTTCTGCCCCATCCTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305518" ref_strand="+" ref_description="SGN-E305518 [cLEX-15-P2]">
      <seq>tgaaatggcttaaaatgaacgctacatgtccactatgcaagtacaacatcctgaagggaaatgatcaggtttaaagcagggagaatgaaaaacattgtacattgtttcgggttattaaagccacttatggaagcttgaaacactacttgctaaatccatatcagaacagaaatctgctttccaactagtcaagcttcctctcatgttcgcttagcatattgagatcttctctgtagtgaatcgtcttctgtgattaaaaaaaatgtagcaccccgcgaagaattaaaaacgaagaagagttggtccttccccccagctcatgtaaattatctttggttccatttgtttccaataggtatacaggatccaactcttgtaagtatatgctattttcttgtgtgtggtttatgtccagttttactgtgctcttttctctaagaaaacagaaaagtgggtgataatttgatatctaagttttactcaatttgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="28732" stop="29823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29032" g_stop="29522" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="505"/>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E305518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29032" e_stop="29522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAGGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTTGGTCCTTCCCCCCAGCTCATGTAAATTATCTTTGGTTCCATTTGTTTCCAATAGGTATACAGGATCCAACTCTTGTAAGTATATGCTATTTTCTTGTGTGTGGTTTATGTCCAGTTTTACTGTGCTCTTTTCTCTAAGAAAACAGAAAAGTGGGTGATAATTTGATATCTAAGTTTTACTCAATTTGTTA</genome_strand>
        <mrna_strand>TGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAGGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTTGGTCCTTCCCCCCAGCTCATGTAAATTATCTTTGGTTCCATTTGTTTCCAATAGGTATACAGGATCCAACTCTTGTAAGTATATGCTATTTTCTTGTGTGTGGTTTATGTCCAGTTTTACTGTGCTCTTTTCTCTAAGAAAACAGAAAAGTGGGTGATAATTTGATATCTAAGTTTTACTCAATTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289246" ref_strand="+" ref_description="SGN-E289246 [cLES-18-C10]">
      <seq>cattgtacattgtttcgggttattaaagccacttatggaagcttgaaacactacttgctaaatccatatcagaacagaaatctgctttccaactagtcaagcttcctctcatgttcgcttagcatattgagatcttctctgtagtgaatcgtcttctgtgattaaaaaaaatgtagcaccccgcgaagaattaaaaacgaagaagagttggtccttccccccagctcatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="28824" stop="29656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29124" g_stop="29356" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E289246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29124" e_stop="29356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTTGGTCCTTCCCCCCAGCTCATGTAA</genome_strand>
        <mrna_strand>CATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTTGGTCCTTCCCCCCAGCTCATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740106" ref_strand="+" ref_description="SGN-E740106 [LC20AE06]">
      <seq>gcaaaataaataataataaaattacaataaaataaataaataaaaaaatttcaatcttccctctcgagtcaattttggttttaggccaaaatttttcttcaattttttagatctgttttacttcaaatttttcagtgtttacagtcatatagttgtttgagttttttcttgtgtgtgtgtctatgcacaaaaacggtttagattgatgtttgtgttgaagcttagggaagatcaaatttgattacaaaattgggcgaaaaagtgggaatttgtttcatacaatttagggtgtttgaattcttgttatgactactgcggaagcgttatctgtgattccagcagctgttcttcgtaatttatcggataagctgtacgagaagcgcaagaatgctgctttagagttggaagggattgttaagcatttgacatctgcgggtgaccatgacaagatcactgctgttatcagtttgttgtctcaggagtatacttactcacctcaggctcataaccggaaaggaggattgataggactggctgcagtaactgttggtttgacttcagatgcagcacaacaccttaagcaaattgtcccgccagtcttacactctttttcgcaccaagacagcagagttcgttattatgcctgtgaagctttgtataacatcgcaaaggttgtaagaggagatttcatcgtattcttcaatcagatctttgatgctttgtgtaagcttgcggcagattcaaatgccaacgtgcaaaagtgctgctcatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="30739" stop="33854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31039" g_stop="31439" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31440" i_stop="31599" i_length="160">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31600" g_stop="31713" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="515" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31714" i_stop="32027" i_length="314">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32028" g_stop="32093" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="581" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32094" i_stop="33281" i_length="1188">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33282" g_stop="33371" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="671" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33372" i_stop="33450" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33451" g_stop="33554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="776" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E740106" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31039" e_stop="31439"/>
          <exon e_start="31600" e_stop="31713"/>
          <exon e_start="32028" e_stop="32093"/>
          <exon e_start="33282" e_stop="33371"/>
          <exon e_start="33451" e_stop="33554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATAAATAATAATAAAATTACAATAAAATAAATAAATAAAAAAATTTCAATCTTCCCTCTCGAGTCAATTTTGGTTTTAGGCCAAAATTTTTCTTCAATTTTTTAGATCTGTTTTACTTCAAATTTTTCAGTGTTTACAGTCATATAGTTGTTTGAGTTTTTTCTTGTGTGTGTGTTTATGCACAAAAACGGTTTAGATTGATGTTTGTGTTGAAGCTTAGGGAAGATCAAATTTGATTACAAAATTGGGCGAAAAAGTGGGAATTTGTTTCATACAATTTAGGGTGTTTGAATTCTTGTTATGACTACTGCGGAAGCGTTATCTGTGATTCCAGCAGCTGTTCTTCGTAATTTATCGGATAAGCTGTACGAGAAGCGCAAGAATGCTGCTTTAGAGGTTTGTTTTAATGGGGTTTTGATGAATTTTTGTTTTTCGTCTTCATTTTTTGTGATTTGGGTTTGTTTTGGTTTTTCCAAAGCTGTGCTTTTTCACCTCCTGTTTTTGGGATTTGGGTTTTTTCAAAGTTGATATATTGATGCTTATTGATTTTGTGTAGTTGGAAGGGATTGTTAAGCATTTGACATCTGCGGGTGACCATGACAAGATCACTGCTGTTATCAGTTTGTTGTCTCAGGAGTATACTTACTCACCTCAGGCTCATAACCGGAAAGTGAGTTTGAATTTTACTCTTTTGGAGTGGTAGGCTTTGGTATATTGGGAAATGATATCCATTATATTGTGGAAAAATGATTTCTAGTGAAAAAATAATTTCTTGGTGTTTCTCGTATGGATGTGGAAGTATTTTCTTTTCAAATATCATAATTCTTACTTATATAACTTGATCAACGACATGTTTGTCAACCATTAGTAATACTGAATATCAGCAAACACTTTTTTTTTGGTACCAACTTTATACCAAACCACACACAGGCAACTTTTTTCCAGAAAGCATTCTTCTCTAACAAACACACACCTGAGCTGCAGGGAGGATTGATAGGACTGGCTGCAGTAACTGTTGGTTTGACTTCAGATGCAGCACAACACCTTAAGGTAGGGTGTTTACCTCGTGATCAACTTTGTTTCCTATCAGTTCTCAATTTTGTGGAAATGCTCTATAAATTTCTTGTTTAGCTGTGAGAAAGGGTGAGGTTATGCCCCAAGGCTTTGGTCTAGTGGTAAGAGCACAACGCGTGATGTCGAGTTAGGCACACATAATGGGTAGATGGTCCATTATCCAACAAATTTTTGATTGTGTGCCATTGGCACTCGAGAGTTTCTCGATTATCAAAGAATAAAACTGAGGGTGAGATTATATGTGCCTAGATCTGAATTTTAGGTTGGTGTTTTCAGAGAACATCATCTGCTGTTAGTAATTACTAGTAATAGATAAACCTTTGGACGAGAAGAGAGATAAAATAAAACTGAGAACATGCATGTTGAAGCTTTACTAAGGTGAATATAGGGTCAGGTATCTTTAGCCTTAGTTTCAATTAGTTTTCCTTGATTGTAAGTTAGAGTACAGAGCAAGTATTTGGGAGAATGATATAGATGTGAGTTAGTGTGTGTATTACTTTGTCCATACGGGTAATTGACTGGATATCAGTGTTTGGATTATCATAGACTTGCTCCTCAAAGAAAAAGCAAATGGCATAAAGATGTAGGTTTGTCCACCATCTTATTACTCATATCTTTCTTTCACAGGGGTAATCCTGTTTATTAGTTTTGAACAAAAGGGGAAGTTTCACTGTTTTCTTTTCATTCTCTACCTTTTATAAATTATGTTCCTATAAAGAAATCCTGTTTATTTGTTTTGTTCTAGAAATCTTCATCTCTTTACAATCGTAGTGCATTTATTCCGTGAATAGAGAACTAAGATTTTGTGCCTACTGTTGTTCTTACACTACTTCAGTGCCTGGACTAGGAAAGGCTTTAGTTTTAAGTCTTTTAAAGATAATAGAACTCCAACCCCGTTCCCGTGAGAGAGTGTATTCATTTTACTTTAGGGTTTAACCTTTTACACTTCACAATTTACTTTTTGTTTCAAATACTTCTTCCTTGACATCATATGTAGCTTTTACCTTTACTTATCCAGAGAACAAGTAGCTTTATATATGGTTCCCTTGAAAAGATTACTGATGTTGTTTCTGTGGCTGTTATTGTTATTTTGGGATGTTGCATTGAGGATTGTGCTATTTTCCCCATTATGCAACTTACCTCTCATCTGGATTTGATGTCCAGCAAATTGTCCCGCCAGTCTTACACTCTTTTTCGCACCAAGACAGCAGAGTTCGTTATTATGCCTGTGAAGCTTTGTATAACATCGCAAAGGTGAGAAAGTTAACGGAGCCTGTACAACACATGTATTTTTGATTCTTGTTGTCCGGATTTCATTTTTTCTACTTTGCAGGTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGC-AAAGTGCTGCTCATCTTTT</genome_strand>
        <mrna_strand>GCAAAATAAATAATAATAAAATTACAATAAAATAAATAAATAAAAAAATTTCAATCTTCCCTCTCGAGTCAATTTTGGTTTTAGGCCAAAATTTTTCTTCAATTTTTTAGATCTGTTTTACTTCAAATTTTTCAGTGTTTACAGTCATATAGTTGTTTGAGTTTTTTCTTGTGTGTGTGTCTATGCACAAAAACGGTTTAGATTGATGTTTGTGTTGAAGCTTAGGGAAGATCAAATTTGATTACAAAATTGGGCGAAAAAGTGGGAATTTGTTTCATACAATTTAGGGTGTTTGAATTCTTGTTATGACTACTGCGGAAGCGTTATCTGTGATTCCAGCAGCTGTTCTTCGTAATTTATCGGATAAGCTGTACGAGAAGCGCAAGAATGCTGCTTTAGAG................................................................................................................................................................TTGGAAGGGATTGTTAAGCATTTGACATCTGCGGGTGACCATGACAAGATCACTGCTGTTATCAGTTTGTTGTCTCAGGAGTATACTTACTCACCTCAGGCTCATAACCGGAAA..........................................................................................................................................................................................................................................................................................................................GGAGGATTGATAGGACTGGCTGCAGTAACTGTTGGTTTGACTTCAGATGCAGCACAACACCTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGTCCCGCCAGTCTTACACTCTTTTTCGCACCAAGACAGCAGAGTTCGTTATTATGCCTGTGAAGCTTTGTATAACATCGCAAAG...............................................................................GTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAAATGCCAACGTGCAAAAGTGCTGCTCATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331065" ref_strand="+" ref_description="SGN-E331065 [cTOD-6-E20]">
      <seq>gcttctctaattccatctctactcttccatcttcctcatctttttcgcaccaagacagcagagttcgttattatgcctgtgaagctttgtataacatcgcaaaggttgtaagaggagatttcatcgtattcttcaatcagatctttgatgctttgtgtaagcttgcggcagattcagatgccaacgtgcaaagtgctgctcatcttttagatagactggtgaaggatatcgtcacagagagtgagcaattcagcattgaagaatttattcctttgctaagagaacgaatgaatgtcctcaatcctcatgtccgccaatttcttgttgggtggatcacagttttagacagtgttccggatattgatatgctcggttttcttcctgattttcttgatggattatttaatatgctgagtgattctagccatgaaatacggcaacaggctgattctgcgctttcagagtttttgcaagagattaagaattctccatctgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="32985" stop="34703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33306" g_stop="33371" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="104" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33372" i_stop="33450" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33451" g_stop="33570" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="224" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33571" i_stop="33948" i_length="378">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33949" g_stop="33977" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="253" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33978" i_stop="34066" i_length="89">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34067" g_stop="34209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="396" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34210" i_stop="34308" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34309" g_stop="34403" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="491" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E331065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33306" e_stop="33371"/>
          <exon e_start="33451" e_stop="33570"/>
          <exon e_start="33949" e_stop="33977"/>
          <exon e_start="34067" e_stop="34209"/>
          <exon e_start="34309" e_stop="34403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCGCACCAAGACAGCAGAGTTCGTTATTATGCCTGTGAAGCTTTGTATAACATCGCAAAGGTGAGAAAGTTAACGGAGCCTGTACAACACATGTATTTTTGATTCTTGTTGTCCGGATTTCATTTTTTCTACTTTGCAGGTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGCAAAGTGCTGCTCATCTTTTAGATAGACTGGTGAAGGTAACACATCACTTCATTTGAAGGCATTGGTCAGAGAGGGAAGAGTATGCAAACATTTTAAAAAATGATGTGTTGTTTAGATGATAATGAATTCCAGTTCGATACACTACAAGGAGGAGGATAGGAGGTGTTGCAGAGGAAAGGAGAGTCTAAAGATGAGGCTTGAGTATTTTTTTCATTGAGGAGTTCAAAATGGTGTAAATTTGCTAATTTTGGGTAGAAAAGTTGGGCGTCCTTTTCTGTTATTTCCTTTCCCCAATTCTTTTTACCGCCAGTGCTTTATGGAGAGCGGGGCAAATGAGTTGCTTTAATCAAAAGATATGCACAGTTTTGGTATTTTGACTTATAACATTGTGCTTAAACTTTTGTTGGATGCAGGATATCGTCACAGAGAGTGAGCAATTCAGGTGAGTTTGGGTTGTTGGAAACCAGGATCTTCATGATGGAACCGAAGTTTGATTTTTCCACTGAATTGGACATTTTGTTTCTTACACAGCATTGAAGAATTTATTCCTTTGCTAAGAGAACGAATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATGGTAATTTCTTGTTTTTCAAAGTCAAAACCTTCTTATCACGCAACTCAATGTTCTAAATTTGTTAACTCATGTGATTTCTCTTGACTTGATGAAGTGCAGGATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCA</genome_strand>
        <mrna_strand>TCTTTTTCGCACCAAGACAGCAGAGTTCGTTATTATGCCTGTGAAGCTTTGTATAACATCGCAAAG...............................................................................GTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGCAAAGTGCTGCTCATCTTTTAGATAGACTGGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................GATATCGTCACAGAGAGTGAGCAATTCAG.........................................................................................CATTGAAGAATTTATTCCTTTGCTAAGAGAACGAATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATG...................................................................................................GATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202985" ref_strand="+" ref_description="SGN-E202985 [cLEB-1-K18]">
      <seq>gcacgaggtgaagctttgtataacatcgcaaaggttgtaagaggagatttcatcgtattcttcaatcagatctttgatgctttgtgtaagcttgcggcagattcagatgccaacgtgcaaagtgctgctcatcttttagatagactggtgaaggatatcgtcacagagagtgagcaattcagcattgaagaatttattcctttgctaagagaacgaatgaatgtcctcaatcctcatgtccgccaatttcttgttgggtggatcacagttttagacagtgttccggatattgatatgctcggttttcttcctgattttcttgatggattatttaatatgctgagtgattctagccatgaaatacggcaacaggctgattctgcgctttcagagtttttgcaagagattaagaattctccatctgtagattatggccgcatggctgaaatactagtgcaaagggcaggctcacaggatgaatttactaggctgacttctatcacttggataaatgaatttgtgaaacttggtggagatcaacttgtcccttattatgctgatattctgggagcaatattgccttgtatatctgataaagaagagaaaataagagttgtttctcgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="33046" stop="38159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33338" g_stop="33371" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33372" i_stop="33450" i_length="79">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33451" g_stop="33570" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="153" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33571" i_stop="33948" i_length="378">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33949" g_stop="33977" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="182" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33978" i_stop="34066" i_length="89">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34067" g_stop="34209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="325" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34210" i_stop="34308" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34309" g_stop="34403" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="420" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34404" i_stop="37505" i_length="3102">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37506" g_stop="37592" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="507" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37593" i_stop="37749" i_length="157">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37750" g_stop="37857" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="615" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37858" i_stop="37990" i_length="133">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37991" g_stop="38003" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="628" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E202985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33338" e_stop="33371"/>
          <exon e_start="33451" e_stop="33570"/>
          <exon e_start="33949" e_stop="33977"/>
          <exon e_start="34067" e_stop="34209"/>
          <exon e_start="34309" e_stop="34403"/>
          <exon e_start="37506" e_stop="37592"/>
          <exon e_start="37750" e_stop="37857"/>
          <exon e_start="37991" e_stop="38003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCCTGTGAAGCTTTGTATAACATCGCAAAGGTGAGAAAGTTAACGGAGCCTGTACAACACATGTATTTTTGATTCTTGTTGTCCGGATTTCATTTTTTCTACTTTGCAGGTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGCAAAGTGCTGCTCATCTTTTAGATAGACTGGTGAAGGTAACACATCACTTCATTTGAAGGCATTGGTCAGAGAGGGAAGAGTATGCAAACATTTTAAAAAATGATGTGTTGTTTAGATGATAATGAATTCCAGTTCGATACACTACAAGGAGGAGGATAGGAGGTGTTGCAGAGGAAAGGAGAGTCTAAAGATGAGGCTTGAGTATTTTTTTCATTGAGGAGTTCAAAATGGTGTAAATTTGCTAATTTTGGGTAGAAAAGTTGGGCGTCCTTTTCTGTTATTTCCTTTCCCCAATTCTTTTTACCGCCAGTGCTTTATGGAGAGCGGGGCAAATGAGTTGCTTTAATCAAAAGATATGCACAGTTTTGGTATTTTGACTTATAACATTGTGCTTAAACTTTTGTTGGATGCAGGATATCGTCACAGAGAGTGAGCAATTCAGGTGAGTTTGGGTTGTTGGAAACCAGGATCTTCATGATGGAACCGAAGTTTGATTTTTCCACTGAATTGGACATTTTGTTTCTTACACAGCATTGAAGAATTTATTCCTTTGCTAAGAGAACGAATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATGGTAATTTCTTGTTTTTCAAAGTCAAAACCTTCTTATCACGCAACTCAATGTTCTAAATTTGTTAACTCATGTGATTTCTCTTGACTTGATGAAGTGCAGGATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCAGTAAGATCTCTGTCATGTGTGGTGTGTTATATTTTTTAATGCTCCCAAAGGAAAATAAAATTTTGAACTTGCAACTTTTTTCCTCTGCTAGTATATTGAGAGTTGAGGCTCGGATGAAAGATATCTGAATATATGTTTGTCCCTCAACCTGCAACTTAAATTTACTAATTTTTGTTTAGTAATTTGTTTCGCTTTCCATTTGTATTTAAGACAGTTGTTCTTTGCTCTGCTTTTGTATCTCCATCCTTTTGGGTTAGTAAGATCCTTTTTTTTTTGACAAAAATCTTAAAGCGTTTTTAACTAGTTATTGTGCATGTGTATACCATATCATCAATATTGTTGAAGTGTGTAACCATCTCATCTAAAAACTTAAGCTAAGCTTTTAGATGAGATAGTCACACACTTTAATATGGTACCAGAGCAATATGGTATCAAAGCAGGCAGAGGTCATGAGATCAAATTTCACCGCCACCCAAATCAAAAAGAATTTCCACGTGCTTGGCCATGAAAAAAAATCAGGCCAGCACGTGAGGGGACGTGTTGAGAATATAATTAAATAATTAAAGTGTGCATCTCTAACAGCTTAAACTTTTAGCTGAGATGGTCACACACTTCAACAAATATAATAGAATTTGTAACAAAAATAAAAAAATTTCTTCTTCATCTAAAAAAACAAAACAATAAAATACATTTTCACTGATATATATATATTTATATTTGTATATATGTATTTCTGAAGACATTTGTTCAAGTTATAAAATTGAAATTGAAATTGAAATGGCGTCATTACATAATCCTTGACCTCTCCCATACATAAGGCAGAAAAGAGGAGTTTTTGACCAACTTCAGCTACACTATTGGTTATAGTAATGGAAGCAACTTCAGTCTTAGTAGCAGTATGAATATGAATATCATTTGTTAGGAAGTGTTTGTATGGTAAAAGGAGTAAGTCTAGTATTAGAATCTCTCAGACCTCATTTGTTTGCACTTAATGCAGGTATTAACTCTAATCCTTCCGATCTCGGTCATTTAGTGCTTTTGTTTTTTTAGGTTTGAATTTTTTTTTGGATGACTGTGGTGTTATGGCCAGGTTTCGCGCACTTCGACTAATTCCACGGGATACATGCCACCTCCCACTAGCAATAGGTACTAGGTAACTCTATCTAGCAAAGCTAGGACAGATAGGAAGAAATAAGAATCACCTAGTGTTTTTTTGTCTCCCTGGGAATTGAACCAAAAAGCTCATGGTTCTCAATCACTTCATTGACCTCTGGGCCACAATCTGAATGATTAGGTGTTGTAATAAGGGGCCTTGTAGTAAAGTCTTAATATCATTAAGATGTCTATTCAAGGACTACTACAAATATGAGTTCACCAATCCCATCCATTATACCTCTACCTCCATTGTCCACAATTATCAACTGCCTATGCCACCGCCTATCATTATCAGATAGCACCACCCACTACCCACAACCACCATCCTCAACCATAACCACCACCACTGTCAATCACTACAATATGTCACCATCATCAACCACTACTGCTAACAACCATCAACACTAGCTAACCACAACACCACATTAGCTAACAGCCCAACACCATAACCAATCGGCACCATAACCACCACTGCTAGCCATCAACACAACCAACCTCCATATAATTTTCTTAAAATATTTTGTTGATATCGTATTAGACTAATTTAGTATTTAATTTAATTTATATTTATTTTAAATGAAGAAGTTTTTTTTTTGAGAAGGTAATATTTGTGTATATTGACAAGCTCTATATACTCAGATGTTGCAAAAATAGTCTTAATTATATATCATTCATATCTTAATATAACATCTAAATAGTTAGTTGTGTAGTCATATTCAAACATCTAAATCTTAATCCACATCTTAATATCCAAATATTTATTCAGTTTCAAATGTCTCAATTTTAATACAAACAAATGAGACTTCAGTATAGAACTAGATGGATCACAACTAATCTTTCAAACCAGTGTCAGCCCAAACTGAATCTCTTATCTACACAAGAAAAAAAAAGGAACAAACTAAAGAGGGCTTCTGATCCATAATAATGGATATTTGGCTCCTTCAAATAGTTCAATATCATGAATATGTTGCTAATATTTACTCAATATTCTTCCAAAATATAGCACTTAATTGCCTAGCCACAATAAAATCACACTCCCTGCATCATCGTCTATATAAAATATTGATGACCAATCTAGTACTTTGTCGAAACCACTAGCCAACCTGAGCCAGCCGAAAGAGCATAGCTAATACATCCTCCTTTTGCCAGTTCAGTTTGAAATTAGGTCTTAGGAGCTCTTATATTGTTATTGCTGCACTTGAGCCGGGTTCTTTCAGAAACAACCTCTCTATCTCCATGAGGTAGTGGTAAGATCTATGTTTATTCTACCCTCCCCAGGCCAATCTTGTGGGATTTCAATGGGTATGTTGTTGTACGAGCTCTGATATAGTTGTTTTCTTTTAAAAAAATATATATGTAGGGGAGAGGGAACGGGAAATGAGGGAGGGGATTGTAATGTGGTAATCGAACCCCCTTACCAATAAGGTGAAAGTTCAAGTAACCAACCAATAGAACTACTAGATCCCTCTAGCTCTAATATAGTTGACTCTATTGCATTTCTAATTATCTTAGCTCAAGATTTAGTTTTAAAATGGCAGGACAAGTTTTATGGGACCGGATTATGTTAGAGAAAGAGAGAAATTGAAGAGGTGTCATCAATGTATACCTTATTTGTCTAATTTCTGTCCTTCCATGTGTCCAAATAATGTGTCATTAAATATATCAGTCAAGAGTGACCATTCAGATATACTCAAATGAATTTGATTCATATGGAAGTACTTTTTACCACTCTATAATTCTCGGTATTTTGAGCACAAAAAAGAGAAGATTGGTTATTGTAGTGATTTGTGGAGAAATAATATGGTTCTTGAAGGAAATATTTGTCATCAGTATTACAAGGATGTTTTTGTCTATCAATATTTAGTTTGATGCTTTCAACTTTTATAATAATGTATAGATTCTTTTTGTCCTTTGTTAGTTTCTAACTTGACGAATGCTGCTCTTAAGTCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGGGTAAGTATGTTGATATGCATGTTGCTTGTGTACCATGTTATCCTGCTTTCTATTGACCGATATTGTGTCTCTTGGCTACGATATCTTCTGGTGTTAACTATATACTAGTGTTTTAACTTGTCAAATCTGTTTGAATAGATTATTTTGTGCCATGCAGATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTTGTAAGTGGAGATGGTCCCCTTTTCCTTTTATTGTATTTGTGTTTTCCCCCCTCTAGCGCTACCTTTCTTCGTTGTTTTTGCTTCTTTGTCTGTCACTCTCACTTTCCTATTCGTCTGTGCTTCTTCCTTTTAGGTTTCTCGTGAAA</genome_strand>
        <mrna_strand>GCACG-AGGTGAAGCTTTGTATAACATCGCAAAG...............................................................................GTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGCAAAGTGCTGCTCATCTTTTAGATAGACTGGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................GATATCGTCACAGAGAGTGAGCAATTCAG.........................................................................................CATTGAAGAATTTATTCCTTTGCTAAGAGAACGAATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATG...................................................................................................GATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGG.............................................................................................................................................................ATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTT.....................................................................................................................................GTTTCTCGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281576" ref_strand="-" ref_description="SGN-E281576 [cLEL-1-L14](-)">
      <seq>gcacgaggtgaagctttgtataacatcgcaaaggttgtaagaggagatttcatcggattcttcaatcagatctttgatgctccgtgtaagcttgcggcagattcagatgccaacgtgcaaagtgctgctcatcttttagatagactggtgaaggatatcgtcacagagagtgagcaattcagcattgaagaatttattcctttgctaagagaacgaatgaatgtcctcaatcctcatgtccgccaatttcttgttgggtggatcacagttttagacagtgttccggatattgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="33046" stop="34480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33338" g_stop="33371" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33372" i_stop="33450" i_length="79">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33451" g_stop="33570" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="153" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33571" i_stop="33948" i_length="378">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33949" g_stop="33977" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="182" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33978" i_stop="34066" i_length="89">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34067" g_stop="34180" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="296" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E281576" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33338" e_stop="33371"/>
          <exon e_start="33451" e_stop="33570"/>
          <exon e_start="33949" e_stop="33977"/>
          <exon e_start="34067" e_stop="34180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCCTGTGAAGCTTTGTATAACATCGCAAAGGTGAGAAAGTTAACGGAGCCTGTACAACACATGTATTTTTGATTCTTGTTGTCCGGATTTCATTTTTTCTACTTTGCAGGTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGCAAAGTGCTGCTCATCTTTTAGATAGACTGGTGAAGGTAACACATCACTTCATTTGAAGGCATTGGTCAGAGAGGGAAGAGTATGCAAACATTTTAAAAAATGATGTGTTGTTTAGATGATAATGAATTCCAGTTCGATACACTACAAGGAGGAGGATAGGAGGTGTTGCAGAGGAAAGGAGAGTCTAAAGATGAGGCTTGAGTATTTTTTTCATTGAGGAGTTCAAAATGGTGTAAATTTGCTAATTTTGGGTAGAAAAGTTGGGCGTCCTTTTCTGTTATTTCCTTTCCCCAATTCTTTTTACCGCCAGTGCTTTATGGAGAGCGGGGCAAATGAGTTGCTTTAATCAAAAGATATGCACAGTTTTGGTATTTTGACTTATAACATTGTGCTTAAACTTTTGTTGGATGCAGGATATCGTCACAGAGAGTGAGCAATTCAGGTGAGTTTGGGTTGTTGGAAACCAGGATCTTCATGATGGAACCGAAGTTTGATTTTTCCACTGAATTGGACATTTTGTTTCTTACACAGCATTGAAGAATTTATTCCTTTGCTAAGAGAACGAATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATAT</genome_strand>
        <mrna_strand>GCACG-AGGTGAAGCTTTGTATAACATCGCAAAG...............................................................................GTTGTAAGAGGAGATTTCATCGGATTCTTCAATCAGATCTTTGATGCTCCGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGCAAAGTGCTGCTCATCTTTTAGATAGACTGGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................GATATCGTCACAGAGAGTGAGCAATTCAG.........................................................................................CATTGAAGAATTTATTCCTTTGCTAAGAGAACGAATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715776" ref_strand="+" ref_description="SGN-E715776 [FB15BA02]">
      <seq>aatgaatgtcctcaatcctcatgtccgccaatttcttgttgggtggatcacagttttagacagtgttccggatattgatatgctcggttttcttcctgattttcttgatggattatttaatatgctgagtgattctagccatgaaatacggcaacaggctgattctgcgctttcagagtttttgcaagagattaagaattctccatctgtagattatggccgcatggctgaaatactagtgcaaagggcaggctcacaggatgaatttactaggctgacttctatcacttggataaatgaatttgtgaaacttggtggagatcaacttgtcccttattatgctgatattctgggagcaatattgccttgtatatctgataaagaagagaaaataagagttgtttctcgtgaaacaaatgacgaacttcgtgcaattgaggctgatccagctgagggttttgatgtaggagcaatcctctctgttgctaggaggcagttgtctagtgaatgggaggcgacacgtattgaatcattacattggatgtggaccctgcttaatggacatcggtccgaggtcttggtttttctgaatgatgtctttgacactctcctaagggcgctatcggatccctccgatgaggtagtgctcctggttcttgaggtgcacgcatgcatagctgaagatccgcaacacttccggcagctagttgttttccttgttcacagctttcagcatgatcactcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="33800" stop="44432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34100" g_stop="34209" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34210" i_stop="34308" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34309" g_stop="34403" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="205" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34404" i_stop="37505" i_length="3102">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37506" g_stop="37592" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="292" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37593" i_stop="37749" i_length="157">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37750" g_stop="37857" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="400" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37858" i_stop="37990" i_length="133">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37991" g_stop="38082" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="492" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38083" i_stop="40400" i_length="2318">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40401" g_stop="40482" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="574" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40483" i_stop="41722" i_length="1240">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41723" g_stop="41788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="640" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41789" i_stop="44024" i_length="2236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44025" g_stop="44132" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="748" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E715776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34100" e_stop="34209"/>
          <exon e_start="34309" e_stop="34403"/>
          <exon e_start="37506" e_stop="37592"/>
          <exon e_start="37750" e_stop="37857"/>
          <exon e_start="37991" e_stop="38082"/>
          <exon e_start="40401" e_stop="40482"/>
          <exon e_start="41723" e_stop="41788"/>
          <exon e_start="44025" e_stop="44132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATGGTAATTTCTTGTTTTTCAAAGTCAAAACCTTCTTATCACGCAACTCAATGTTCTAAATTTGTTAACTCATGTGATTTCTCTTGACTTGATGAAGTGCAGGATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCAGTAAGATCTCTGTCATGTGTGGTGTGTTATATTTTTTAATGCTCCCAAAGGAAAATAAAATTTTGAACTTGCAACTTTTTTCCTCTGCTAGTATATTGAGAGTTGAGGCTCGGATGAAAGATATCTGAATATATGTTTGTCCCTCAACCTGCAACTTAAATTTACTAATTTTTGTTTAGTAATTTGTTTCGCTTTCCATTTGTATTTAAGACAGTTGTTCTTTGCTCTGCTTTTGTATCTCCATCCTTTTGGGTTAGTAAGATCCTTTTTTTTTTGACAAAAATCTTAAAGCGTTTTTAACTAGTTATTGTGCATGTGTATACCATATCATCAATATTGTTGAAGTGTGTAACCATCTCATCTAAAAACTTAAGCTAAGCTTTTAGATGAGATAGTCACACACTTTAATATGGTACCAGAGCAATATGGTATCAAAGCAGGCAGAGGTCATGAGATCAAATTTCACCGCCACCCAAATCAAAAAGAATTTCCACGTGCTTGGCCATGAAAAAAAATCAGGCCAGCACGTGAGGGGACGTGTTGAGAATATAATTAAATAATTAAAGTGTGCATCTCTAACAGCTTAAACTTTTAGCTGAGATGGTCACACACTTCAACAAATATAATAGAATTTGTAACAAAAATAAAAAAATTTCTTCTTCATCTAAAAAAACAAAACAATAAAATACATTTTCACTGATATATATATATTTATATTTGTATATATGTATTTCTGAAGACATTTGTTCAAGTTATAAAATTGAAATTGAAATTGAAATGGCGTCATTACATAATCCTTGACCTCTCCCATACATAAGGCAGAAAAGAGGAGTTTTTGACCAACTTCAGCTACACTATTGGTTATAGTAATGGAAGCAACTTCAGTCTTAGTAGCAGTATGAATATGAATATCATTTGTTAGGAAGTGTTTGTATGGTAAAAGGAGTAAGTCTAGTATTAGAATCTCTCAGACCTCATTTGTTTGCACTTAATGCAGGTATTAACTCTAATCCTTCCGATCTCGGTCATTTAGTGCTTTTGTTTTTTTAGGTTTGAATTTTTTTTTGGATGACTGTGGTGTTATGGCCAGGTTTCGCGCACTTCGACTAATTCCACGGGATACATGCCACCTCCCACTAGCAATAGGTACTAGGTAACTCTATCTAGCAAAGCTAGGACAGATAGGAAGAAATAAGAATCACCTAGTGTTTTTTTGTCTCCCTGGGAATTGAACCAAAAAGCTCATGGTTCTCAATCACTTCATTGACCTCTGGGCCACAATCTGAATGATTAGGTGTTGTAATAAGGGGCCTTGTAGTAAAGTCTTAATATCATTAAGATGTCTATTCAAGGACTACTACAAATATGAGTTCACCAATCCCATCCATTATACCTCTACCTCCATTGTCCACAATTATCAACTGCCTATGCCACCGCCTATCATTATCAGATAGCACCACCCACTACCCACAACCACCATCCTCAACCATAACCACCACCACTGTCAATCACTACAATATGTCACCATCATCAACCACTACTGCTAACAACCATCAACACTAGCTAACCACAACACCACATTAGCTAACAGCCCAACACCATAACCAATCGGCACCATAACCACCACTGCTAGCCATCAACACAACCAACCTCCATATAATTTTCTTAAAATATTTTGTTGATATCGTATTAGACTAATTTAGTATTTAATTTAATTTATATTTATTTTAAATGAAGAAGTTTTTTTTTTGAGAAGGTAATATTTGTGTATATTGACAAGCTCTATATACTCAGATGTTGCAAAAATAGTCTTAATTATATATCATTCATATCTTAATATAACATCTAAATAGTTAGTTGTGTAGTCATATTCAAACATCTAAATCTTAATCCACATCTTAATATCCAAATATTTATTCAGTTTCAAATGTCTCAATTTTAATACAAACAAATGAGACTTCAGTATAGAACTAGATGGATCACAACTAATCTTTCAAACCAGTGTCAGCCCAAACTGAATCTCTTATCTACACAAGAAAAAAAAAGGAACAAACTAAAGAGGGCTTCTGATCCATAATAATGGATATTTGGCTCCTTCAAATAGTTCAATATCATGAATATGTTGCTAATATTTACTCAATATTCTTCCAAAATATAGCACTTAATTGCCTAGCCACAATAAAATCACACTCCCTGCATCATCGTCTATATAAAATATTGATGACCAATCTAGTACTTTGTCGAAACCACTAGCCAACCTGAGCCAGCCGAAAGAGCATAGCTAATACATCCTCCTTTTGCCAGTTCAGTTTGAAATTAGGTCTTAGGAGCTCTTATATTGTTATTGCTGCACTTGAGCCGGGTTCTTTCAGAAACAACCTCTCTATCTCCATGAGGTAGTGGTAAGATCTATGTTTATTCTACCCTCCCCAGGCCAATCTTGTGGGATTTCAATGGGTATGTTGTTGTACGAGCTCTGATATAGTTGTTTTCTTTTAAAAAAATATATATGTAGGGGAGAGGGAACGGGAAATGAGGGAGGGGATTGTAATGTGGTAATCGAACCCCCTTACCAATAAGGTGAAAGTTCAAGTAACCAACCAATAGAACTACTAGATCCCTCTAGCTCTAATATAGTTGACTCTATTGCATTTCTAATTATCTTAGCTCAAGATTTAGTTTTAAAATGGCAGGACAAGTTTTATGGGACCGGATTATGTTAGAGAAAGAGAGAAATTGAAGAGGTGTCATCAATGTATACCTTATTTGTCTAATTTCTGTCCTTCCATGTGTCCAAATAATGTGTCATTAAATATATCAGTCAAGAGTGACCATTCAGATATACTCAAATGAATTTGATTCATATGGAAGTACTTTTTACCACTCTATAATTCTCGGTATTTTGAGCACAAAAAAGAGAAGATTGGTTATTGTAGTGATTTGTGGAGAAATAATATGGTTCTTGAAGGAAATATTTGTCATCAGTATTACAAGGATGTTTTTGTCTATCAATATTTAGTTTGATGCTTTCAACTTTTATAATAATGTATAGATTCTTTTTGTCCTTTGTTAGTTTCTAACTTGACGAATGCTGCTCTTAAGTCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGGGTAAGTATGTTGATATGCATGTTGCTTGTGTACCATGTTATCCTGCTTTCTATTGACCGATATTGTGTCTCTTGGCTACGATATCTTCTGGTGTTAACTATATACTAGTGTTTTAACTTGTCAAATCTGTTTGAATAGATTATTTTGTGCCATGCAGATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTTGTAAGTGGAGATGGTCCCCTTTTCCTTTTATTGTATTTGTGTTTTCCCCCCTCTAGCGCTACCTTTCTTCGTTGTTTTTGCTTCTTTGTCTGTCACTCTCACTTTCCTATTCGTCTGTGCTTCTTCCTTTTAGGTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAGGTATAAGTTACTTATTGAGGGATATTTGGATTGTGAAGATTTGAAGAAGTTGAAATGTCTGATAGTTTATAGTACAGTAGATAATCAATTAAAGAATTCACTAGTTTCATTAAATAATGGTAGTTGGCTTTTTGTTGAAATATGATTTTTATAATAGCCAAATACTTCTGACTATAGAACTATGACCTTAATACTTAAATTTTTATGTTCTTTGTGTTTGTTAAGAAATGGATCTTTGGCCTAACTCAATCCCAAAACTGATTGCCCAATATTATACAAGGAGACAACAACCTTTTGCCTTGAGCAATGTAGGACTTGACACCCTCCCTCACGCCTGGACTACTGTAGAATGGCTAACAACATGGGGGCTCAACATTGCAAAACCACATCAACAAGGATCAATGGATCCAGACCAGATACCATGTTAAGTTATGGACCTTAGGCCTATCTGGTAGGGTCTTTGATACGGATCTAGTTATGTGACGCTGCAAGATGAAATCAAATGTTCTTATGCTACGACCTATGGTGCTGGTTCGTTAAGAGAGATTTCTCGAGTTTAAGTACTCAAAAACTGGAATAGTTTTTTGCTTATCTTTCCATTGAATTCAAATAACTTTAAACACAACATTGGTGGAGTAACTACCCACCTAATAACAAGGAAATAACTTCCTACTACTACTAGAATGAGAAAGTGGAGTAATAACCTCCTATAAAGAAACAAGAAAACATAATTAATAGATAAGTTGAAGTATTCTACTTTTAATTTCTTTAAATTTTCTTTGGTAGACTAAAGGGATGCTAGCACTATATCAATCTTTAATGCTAGCTCATGAGAGGATGATTAGCCAATATCATATTAGGAAACCATAACTCAGTTCAGAAATTGACAAGCTCTGTTGGGATGTGGGCCATTTCTCTTCCCTGCCTTCCAACTAATTTCTAGCAAATAGGTTTATTTATTCTATTAGCTACTCTTCCTGATTCGGGTGTCAATCTCATGTTGATCTCTTCTATTTTCCTGATACGGTAAAGGTTTCATTAAAGGAAGTACCAAAAAGGTACCCAAAAAATCTTACAAGCTCTAGCATAGCTGTATCAGTAACATTCCCAAAACACCTAGAAATTCCATAAGCTGATCTAAGTTATCCACTATATCTCCCGTATCCTGCAAGTACAAATTTTCAGGACATGAATTCTTTGGTAAATCTAGGTAACTCCTTTGGTTCTCAAAGCATCTCTTATTTCTTTCCAACCAAATGGTTCAAGAGATCCAAAAAGGTATAGTATTTTAGATTGTCTTAAGATCTTTCTTGACTTTCTGAGATTGCCAACATTATCCTGCTAATGTCTTGTCCCTTTTTATCTCTATTGCCTCTTGTTTGATCTTCATGAGGCAACCATTGCCATGTGTAAGATCAGTGGATGTGTAAGAGTTATGTTTCAAAAGCAATTACTTAGACTGGAAAGTAGAGAGTATTCTTTTAGTTACAGGAGTTTGAACAGGTGTACTACATGGCTGATGAGAAAGACTTTCTGGCTTTTCACTGCACATAGAAGTGGCAGATTCTCAGTGAACTCCTGCTATTGGAACCTTGACTCTGGAGCCTTCAACTTCCAGCAATGACTTGGAAATTGATTTAGGGAACTAAATCTCCTCAGACAAGAGCTTATCTTTTGGTGTTAGCTCATGGTGCATGTCCAAACAAATTTGCAAAAAGCAAATGCAGTGAAACAGATGTTTTTGTGTGGAAAAGAAATCGAGAGTAGCAAACTCTTATTTTTGCTTTGTACTGTAGCTGGATAATTGCCGAACCTGCTTTTGAATAAATTTGGGTGATATGGGTGATGCCAAATACTATGATGGAACTCTTGTGCCGCTGGACGGGATACATGTGTATGAATGAACCAAGGAACTTATGGATAGAAACCCAGCTTGCCCGCGCTGGGTGGTATGGAAAGAGAGCAATCTGAGACACTTGACAGAATATACAGTTGTACATATTATTAAACATGTCGATGCCTAGATATGGTAGCTCTCGGATGTAATTTTCACAATGCATGAAAATGCCAAAATGGTACAATTCATTTGTTCTATGCAACAGTGAACATGCTTAGGAAATGTTTACGACCCTTTTCTACTGCCTGTATACTTGGCTATCAATAAATTACATATAGGAAAAGCTTACCAATTTAATAATGTGATTGGATTATTTATGAAAATCAAAACATAACAGAGTTTGTGATAAGAATAGTTATATCCAAGTAGCTATATGTTATAGTATTGCTTAGTTAACTTTCTGTCTCAATTTGTTTATCAGGCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACATCGGTCCGAGGTGAAGACCTAAAATTTAATGACGGTCATCTTGTTTATTCTTTTGTTCAATGAGAACACTCTCTTATGGGCTTACAGAATGGCATAGGAGTTGATATCTTAAACTACACTGCTTTCCAGTGGGGATACAATACCATTATCTTTTAATGCTGATTGCTGAGAATGGAGCCTGAGTTGCTAAAAGTACTAGCTCATGTGTTGTTGCTTGTTGGGATGCTTATTAAAGAACAAGGACACAAGGTTTTGAAAGTGTTATCTAAAAGAGAGGTCATGAATCATGTTTGAAACCTACAATTTGTGTGTTTCAAATTTGTATTTTTCATTTAGAAACTAATTGAATTTGTGTAGAAGAAGCAATGGGCTTTAGAAGGAGAGAAATCTCAGTTCCCTGCTCTTTGTGGTTGTACTTGTCCCTTCTATCTCTCTGGAATGAGATGGAAGATCTAGGAAATGTGGTGCCAGTTTCTGCAATAATCTTTGAGCTATATTATACTCCTGTGTGGCTGTGACATGGTTATTCTTCTACAGCTGCAAATGCTTATTGAAGAAACAAGACAAAGTTTTGAAAAGTGTTTTCTACAGGAGAGGTCATGAATCATGTTTGAAACATAGTTGTGTATTCCACAATTTGTATTTTTCATTTATTTCACAAAGCATGATGGGCTGGTACTTACAATCCATGGGCGTGTAACCATGTATTTTTCATTTAGTAACTAATCAAATCTGTGTAAAACAAGCAAAGGGCTTTAAAAGAAGAGAAGTCTCAGTTCCTTGCTCTTTGTGGTTTTCCCTTCTCTCTCTGGGATGAGATGGAGGATCTGGGAAATGAGGTGCTAGTTTCTTCAATAAATCTTAGAGCCTTATTATACTCCTGTGACATGGTTATTCCTCTACAGCTGCATCACCTAATGTTCTGCTGCATCATAGTTGCATTTGATGTTTTGTCATATTCTGTTCTATCAAAATAAAGCTCATTATTCATGCTACTATAGTTGTATTTTTAGGTAAAATCATGCATAAAAATGGATTTACTATTATTAGGACAAGTTTTTTGCATTATATTTAGGTGTATATATTACAAATTCGATTCAACTTTCACAAGTAGTATCATATATTCGGTATCGGAATAAGTTCATTGGTAACACTCAGATAATGAAAAATATCTTATTGTCAGTATTTTTTATGACTTCTAAAGTTTGATCTGGTAAGTGAATGTTCATGTTTCCAATTTTTCGAAACAGGTCTTGGTTTTTCTGAATGATGTCTTTGACACTCTCCTAAGGGCGCTATCGGATCCCTCCGATGAGGTATCTCTTATTGCTTTTATTCTTTTTCATTGAGTTTGTCATGCTGGTTTGCTTTGCTAGGTCTAGCCATTGTTCTAGCTTCTGATGGACAAGTGATAATAATAGCCAATACGACTTTTCTGGTAGCATTATGGTTGTGTTTTCCAGGCATGTGCTGACTTTCAAAAGTTCACTTAGGTTTTGTGCATTAGCTGTGGCCTTTGTTTTGTTCCCCTAGCGTAGTTTCTTGGCAAATTTTGGCCGTAATTCATCCTTCCCTTTGCACTCAATACCCGTGATTCTTTTTGGCACCCCCTTCTTGATTCTTCTGGAAATTTTACAGCTCTACATGACTCCTTCATTCTTGTTTCCAGATCATCCTTAACCTAATTATCAATCAGTTGAAAAAAAAGAAGAATAAGAATTAAAATCTTACCTCACATTAATCATTTTTTTAATCCATTGTACTATTTTAAGGCTGGCAAATATTTGCTGCTTGAATGATTTCTAAAAGTGCTCTAAACTGCATACATGATATTTGATATTTCCTGCATTCATTGCCACAAATATTCACTTGTTTTGGAGGATGAATGCGAAAAGTTTATTCTGGACTCTTATTACCTTACTAGTTTTTGGATACGCGCGATGCACATGTACTATATTTCAAGGAGTAAAAGTTTATTTAAAATTTGTGTTTGAGATATAAAATAGAAGAGTAAGTCGATGATGGATATTATTTTTCCTTATTGATGATGAATGTTAAATCCTATATAACTAACTCAGTAAAAGATGAAATTGCCCCTCAATCATCCGTCAGTTATTCAACTTATAATTTGTTCTACTTTTATAATTCCATCATTTTAATTTTACAAATTATCATACTACCTTTTTAGTTTCAGTACGAGCATATGACTCTTGAAAATCTAAAAGTTTTGGAGGATAGAACATATAAGTAGGCAACAAATATTCCACGAGCTTCAAATGAACAGACCAAACCCCACTTCGTGGGATTTCACAGGGTATGCTTCAGATGAACAGAAAATCAAAGTTCCATGAAAATCATAAAAAGACTATTGAAAGATGACGTATACACTGAGTGTAAAAAATAGTTACAAAATCAATTTATTTATTCCCTTCGCCCCATTTTATATGAAAGTATTAATGATTGGGGAGTCAGCCGATTTTTCTTTGACTATAATTTTCTCAAACTTATTTGAATTATTTTAAATCATTGACAATGTTGACTTGTAGTTCGTGTAACTTTCAAGAATATACCCGAATTCATAGTACTCCCATGCTAATTCTTCCAAAGAATTAATTAAAATTAAAAAGGAAAAGCAAAACAAAACCAATTTCATGAAAGAAAAAATGATAAGAAAATTTAGTCACAGAAATATCTGAAAGGGAGACACTTGATGGTTTATTACTCATATATAATAGTAGCTCGATCATCAAAGAACATAGGCGAGGAACTTAGAAAGGCTTAAACCAACTTAATAGCTGTAAATACAAGTAAACAAAGAGACCAAAATAGGAAATGTCTTTTTGGCATCATTAATATGACTGATCATTATCCTATATCAAGGTATTTATGTTCCCTTCGCGTTGTTTGGGATTGAGACTTACATGTTGGAGTTCAAAAAGTCTTGTCAGTGAAAGCAAGGGGTTTGCTTTTTGGGTCTAGCTCGTTGCACCGGGCTTGCCTAGTGTGGGTTATCTCTCCTATGTGGTCGAGCTATTGCATAGGAGCGGGGGTTTTACCTTGTGTACACCTAAAGGGTAGTGGCTGTGGGTTTCACTTGTCATAAAAAAAAATTAAGGTATTTATGTTTTTGTATATTATATAATTATTTAATATATATTTTAAATGGACATAAATGTCCATCAATATTATAGGGATATTATCGTTTTTCAACTTTAGACTTAAAACTTTCCCGCTTTCAGTATAGTAAGATGATTTAAAAAATGATGTTTGACCCTTATTACCTGATTTAAAGAACCATTATGCTTGACCTTTGTTAATCTGTCTTGAAATGAAAGAAAGTTAAAGATGAAATAAGATAATGGGTTAGATGTTCCAATAAACATTGCCTCTCAGTCAAACTTTTGTTTGAGATTGCTGAAGTCATCTTTCTAACTTCCAAATTTAAATGCTCGTCTCAAATGAGTCTAGACACCCACTATTCCGCAGGGTGATTTTAGAGGGTGCTTCCTGCTATTTTTGATTGTTCTGAGTCTTCTTTAAATTCTCTTCCAGGTAGTGCTCCTGGTTCTTGAGGTGCACGCATGCATAGCTGAAGATCCGCAACACTTCCGGCAGCTAGTTGTTTTCCTTGTTCACAGCTTTCAGCATGATCACTCACTC</genome_strand>
        <mrna_strand>AATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATG...................................................................................................GATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGG.............................................................................................................................................................ATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTT.....................................................................................................................................GTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACATCGGTCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGTTTTTCTGAATGATGTCTTTGACACTCTCCTAAGGGCGCTATCGGATCCCTCCGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGCTCCTGGTTCTTGAGGTGCACGCATGCATAGCTGAAGATCCGCAACACTTCCGGCAGCTAGTTGTTTTCCTTGTTCACAGCTTTCAGCATGATCACTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369547" ref_strand="+" ref_description="SGN-E369547 [TUS-25-D14]">
      <seq>tccggatattgatatgctcggttttcttcctgattttcttgatggattatttaatatgctgagtgattctagccatgaaatacggcaacaggctgattctgcgctttcagagtttttgcaagagattaagaattctccatctgtagattatggccgcatggctgaaatactagtgcaaagggcaggctcacaggatgaatttactaggctgacttctatcacttggataaatgaatttgtgaaacttggtggagatcaacttgtcccttattatgctgatattctgggagcaatattgccttgtatatctgataaagaagagaaaataagagttgtttctcgtgaaacaaatgacgaacttcgtgcaattgaggctgatccagctgagggttttgatgtaggagcaatcctctctgttgctaggaggcagttgtctagtgaatgggaggcgacacgtattgaatcattacattggatgtggaccctgcttaatggacatcggtccgaggtcttggtttttctgaatgatgtctttgacactctcctaagggcgctatcggatccctccgatgaggtagtgctcctggttcttgaggtgcacgcatgcatagctgaagatccgcaacactttcggcagctagttgttttccttgttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="33866" stop="44409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34166" g_stop="34209" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34210" i_stop="34308" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34309" g_stop="34403" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="139" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34404" i_stop="37505" i_length="3102">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37506" g_stop="37592" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37593" i_stop="37749" i_length="157">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37750" g_stop="37857" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="334" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37858" i_stop="37990" i_length="133">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37991" g_stop="38082" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="426" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38083" i_stop="40400" i_length="2318">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40401" g_stop="40482" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="508" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40483" i_stop="41722" i_length="1240">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41723" g_stop="41788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="574" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41789" i_stop="44024" i_length="2236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44025" g_stop="44109" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="659" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E369547" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34166" e_stop="34209"/>
          <exon e_start="34309" e_stop="34403"/>
          <exon e_start="37506" e_stop="37592"/>
          <exon e_start="37750" e_stop="37857"/>
          <exon e_start="37991" e_stop="38082"/>
          <exon e_start="40401" e_stop="40482"/>
          <exon e_start="41723" e_stop="41788"/>
          <exon e_start="44025" e_stop="44109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATGGTAATTTCTTGTTTTTCAAAGTCAAAACCTTCTTATCACGCAACTCAATGTTCTAAATTTGTTAACTCATGTGATTTCTCTTGACTTGATGAAGTGCAGGATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCAGTAAGATCTCTGTCATGTGTGGTGTGTTATATTTTTTAATGCTCCCAAAGGAAAATAAAATTTTGAACTTGCAACTTTTTTCCTCTGCTAGTATATTGAGAGTTGAGGCTCGGATGAAAGATATCTGAATATATGTTTGTCCCTCAACCTGCAACTTAAATTTACTAATTTTTGTTTAGTAATTTGTTTCGCTTTCCATTTGTATTTAAGACAGTTGTTCTTTGCTCTGCTTTTGTATCTCCATCCTTTTGGGTTAGTAAGATCCTTTTTTTTTTGACAAAAATCTTAAAGCGTTTTTAACTAGTTATTGTGCATGTGTATACCATATCATCAATATTGTTGAAGTGTGTAACCATCTCATCTAAAAACTTAAGCTAAGCTTTTAGATGAGATAGTCACACACTTTAATATGGTACCAGAGCAATATGGTATCAAAGCAGGCAGAGGTCATGAGATCAAATTTCACCGCCACCCAAATCAAAAAGAATTTCCACGTGCTTGGCCATGAAAAAAAATCAGGCCAGCACGTGAGGGGACGTGTTGAGAATATAATTAAATAATTAAAGTGTGCATCTCTAACAGCTTAAACTTTTAGCTGAGATGGTCACACACTTCAACAAATATAATAGAATTTGTAACAAAAATAAAAAAATTTCTTCTTCATCTAAAAAAACAAAACAATAAAATACATTTTCACTGATATATATATATTTATATTTGTATATATGTATTTCTGAAGACATTTGTTCAAGTTATAAAATTGAAATTGAAATTGAAATGGCGTCATTACATAATCCTTGACCTCTCCCATACATAAGGCAGAAAAGAGGAGTTTTTGACCAACTTCAGCTACACTATTGGTTATAGTAATGGAAGCAACTTCAGTCTTAGTAGCAGTATGAATATGAATATCATTTGTTAGGAAGTGTTTGTATGGTAAAAGGAGTAAGTCTAGTATTAGAATCTCTCAGACCTCATTTGTTTGCACTTAATGCAGGTATTAACTCTAATCCTTCCGATCTCGGTCATTTAGTGCTTTTGTTTTTTTAGGTTTGAATTTTTTTTTGGATGACTGTGGTGTTATGGCCAGGTTTCGCGCACTTCGACTAATTCCACGGGATACATGCCACCTCCCACTAGCAATAGGTACTAGGTAACTCTATCTAGCAAAGCTAGGACAGATAGGAAGAAATAAGAATCACCTAGTGTTTTTTTGTCTCCCTGGGAATTGAACCAAAAAGCTCATGGTTCTCAATCACTTCATTGACCTCTGGGCCACAATCTGAATGATTAGGTGTTGTAATAAGGGGCCTTGTAGTAAAGTCTTAATATCATTAAGATGTCTATTCAAGGACTACTACAAATATGAGTTCACCAATCCCATCCATTATACCTCTACCTCCATTGTCCACAATTATCAACTGCCTATGCCACCGCCTATCATTATCAGATAGCACCACCCACTACCCACAACCACCATCCTCAACCATAACCACCACCACTGTCAATCACTACAATATGTCACCATCATCAACCACTACTGCTAACAACCATCAACACTAGCTAACCACAACACCACATTAGCTAACAGCCCAACACCATAACCAATCGGCACCATAACCACCACTGCTAGCCATCAACACAACCAACCTCCATATAATTTTCTTAAAATATTTTGTTGATATCGTATTAGACTAATTTAGTATTTAATTTAATTTATATTTATTTTAAATGAAGAAGTTTTTTTTTTGAGAAGGTAATATTTGTGTATATTGACAAGCTCTATATACTCAGATGTTGCAAAAATAGTCTTAATTATATATCATTCATATCTTAATATAACATCTAAATAGTTAGTTGTGTAGTCATATTCAAACATCTAAATCTTAATCCACATCTTAATATCCAAATATTTATTCAGTTTCAAATGTCTCAATTTTAATACAAACAAATGAGACTTCAGTATAGAACTAGATGGATCACAACTAATCTTTCAAACCAGTGTCAGCCCAAACTGAATCTCTTATCTACACAAGAAAAAAAAAGGAACAAACTAAAGAGGGCTTCTGATCCATAATAATGGATATTTGGCTCCTTCAAATAGTTCAATATCATGAATATGTTGCTAATATTTACTCAATATTCTTCCAAAATATAGCACTTAATTGCCTAGCCACAATAAAATCACACTCCCTGCATCATCGTCTATATAAAATATTGATGACCAATCTAGTACTTTGTCGAAACCACTAGCCAACCTGAGCCAGCCGAAAGAGCATAGCTAATACATCCTCCTTTTGCCAGTTCAGTTTGAAATTAGGTCTTAGGAGCTCTTATATTGTTATTGCTGCACTTGAGCCGGGTTCTTTCAGAAACAACCTCTCTATCTCCATGAGGTAGTGGTAAGATCTATGTTTATTCTACCCTCCCCAGGCCAATCTTGTGGGATTTCAATGGGTATGTTGTTGTACGAGCTCTGATATAGTTGTTTTCTTTTAAAAAAATATATATGTAGGGGAGAGGGAACGGGAAATGAGGGAGGGGATTGTAATGTGGTAATCGAACCCCCTTACCAATAAGGTGAAAGTTCAAGTAACCAACCAATAGAACTACTAGATCCCTCTAGCTCTAATATAGTTGACTCTATTGCATTTCTAATTATCTTAGCTCAAGATTTAGTTTTAAAATGGCAGGACAAGTTTTATGGGACCGGATTATGTTAGAGAAAGAGAGAAATTGAAGAGGTGTCATCAATGTATACCTTATTTGTCTAATTTCTGTCCTTCCATGTGTCCAAATAATGTGTCATTAAATATATCAGTCAAGAGTGACCATTCAGATATACTCAAATGAATTTGATTCATATGGAAGTACTTTTTACCACTCTATAATTCTCGGTATTTTGAGCACAAAAAAGAGAAGATTGGTTATTGTAGTGATTTGTGGAGAAATAATATGGTTCTTGAAGGAAATATTTGTCATCAGTATTACAAGGATGTTTTTGTCTATCAATATTTAGTTTGATGCTTTCAACTTTTATAATAATGTATAGATTCTTTTTGTCCTTTGTTAGTTTCTAACTTGACGAATGCTGCTCTTAAGTCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGGGTAAGTATGTTGATATGCATGTTGCTTGTGTACCATGTTATCCTGCTTTCTATTGACCGATATTGTGTCTCTTGGCTACGATATCTTCTGGTGTTAACTATATACTAGTGTTTTAACTTGTCAAATCTGTTTGAATAGATTATTTTGTGCCATGCAGATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTTGTAAGTGGAGATGGTCCCCTTTTCCTTTTATTGTATTTGTGTTTTCCCCCCTCTAGCGCTACCTTTCTTCGTTGTTTTTGCTTCTTTGTCTGTCACTCTCACTTTCCTATTCGTCTGTGCTTCTTCCTTTTAGGTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAGGTATAAGTTACTTATTGAGGGATATTTGGATTGTGAAGATTTGAAGAAGTTGAAATGTCTGATAGTTTATAGTACAGTAGATAATCAATTAAAGAATTCACTAGTTTCATTAAATAATGGTAGTTGGCTTTTTGTTGAAATATGATTTTTATAATAGCCAAATACTTCTGACTATAGAACTATGACCTTAATACTTAAATTTTTATGTTCTTTGTGTTTGTTAAGAAATGGATCTTTGGCCTAACTCAATCCCAAAACTGATTGCCCAATATTATACAAGGAGACAACAACCTTTTGCCTTGAGCAATGTAGGACTTGACACCCTCCCTCACGCCTGGACTACTGTAGAATGGCTAACAACATGGGGGCTCAACATTGCAAAACCACATCAACAAGGATCAATGGATCCAGACCAGATACCATGTTAAGTTATGGACCTTAGGCCTATCTGGTAGGGTCTTTGATACGGATCTAGTTATGTGACGCTGCAAGATGAAATCAAATGTTCTTATGCTACGACCTATGGTGCTGGTTCGTTAAGAGAGATTTCTCGAGTTTAAGTACTCAAAAACTGGAATAGTTTTTTGCTTATCTTTCCATTGAATTCAAATAACTTTAAACACAACATTGGTGGAGTAACTACCCACCTAATAACAAGGAAATAACTTCCTACTACTACTAGAATGAGAAAGTGGAGTAATAACCTCCTATAAAGAAACAAGAAAACATAATTAATAGATAAGTTGAAGTATTCTACTTTTAATTTCTTTAAATTTTCTTTGGTAGACTAAAGGGATGCTAGCACTATATCAATCTTTAATGCTAGCTCATGAGAGGATGATTAGCCAATATCATATTAGGAAACCATAACTCAGTTCAGAAATTGACAAGCTCTGTTGGGATGTGGGCCATTTCTCTTCCCTGCCTTCCAACTAATTTCTAGCAAATAGGTTTATTTATTCTATTAGCTACTCTTCCTGATTCGGGTGTCAATCTCATGTTGATCTCTTCTATTTTCCTGATACGGTAAAGGTTTCATTAAAGGAAGTACCAAAAAGGTACCCAAAAAATCTTACAAGCTCTAGCATAGCTGTATCAGTAACATTCCCAAAACACCTAGAAATTCCATAAGCTGATCTAAGTTATCCACTATATCTCCCGTATCCTGCAAGTACAAATTTTCAGGACATGAATTCTTTGGTAAATCTAGGTAACTCCTTTGGTTCTCAAAGCATCTCTTATTTCTTTCCAACCAAATGGTTCAAGAGATCCAAAAAGGTATAGTATTTTAGATTGTCTTAAGATCTTTCTTGACTTTCTGAGATTGCCAACATTATCCTGCTAATGTCTTGTCCCTTTTTATCTCTATTGCCTCTTGTTTGATCTTCATGAGGCAACCATTGCCATGTGTAAGATCAGTGGATGTGTAAGAGTTATGTTTCAAAAGCAATTACTTAGACTGGAAAGTAGAGAGTATTCTTTTAGTTACAGGAGTTTGAACAGGTGTACTACATGGCTGATGAGAAAGACTTTCTGGCTTTTCACTGCACATAGAAGTGGCAGATTCTCAGTGAACTCCTGCTATTGGAACCTTGACTCTGGAGCCTTCAACTTCCAGCAATGACTTGGAAATTGATTTAGGGAACTAAATCTCCTCAGACAAGAGCTTATCTTTTGGTGTTAGCTCATGGTGCATGTCCAAACAAATTTGCAAAAAGCAAATGCAGTGAAACAGATGTTTTTGTGTGGAAAAGAAATCGAGAGTAGCAAACTCTTATTTTTGCTTTGTACTGTAGCTGGATAATTGCCGAACCTGCTTTTGAATAAATTTGGGTGATATGGGTGATGCCAAATACTATGATGGAACTCTTGTGCCGCTGGACGGGATACATGTGTATGAATGAACCAAGGAACTTATGGATAGAAACCCAGCTTGCCCGCGCTGGGTGGTATGGAAAGAGAGCAATCTGAGACACTTGACAGAATATACAGTTGTACATATTATTAAACATGTCGATGCCTAGATATGGTAGCTCTCGGATGTAATTTTCACAATGCATGAAAATGCCAAAATGGTACAATTCATTTGTTCTATGCAACAGTGAACATGCTTAGGAAATGTTTACGACCCTTTTCTACTGCCTGTATACTTGGCTATCAATAAATTACATATAGGAAAAGCTTACCAATTTAATAATGTGATTGGATTATTTATGAAAATCAAAACATAACAGAGTTTGTGATAAGAATAGTTATATCCAAGTAGCTATATGTTATAGTATTGCTTAGTTAACTTTCTGTCTCAATTTGTTTATCAGGCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACATCGGTCCGAGGTGAAGACCTAAAATTTAATGACGGTCATCTTGTTTATTCTTTTGTTCAATGAGAACACTCTCTTATGGGCTTACAGAATGGCATAGGAGTTGATATCTTAAACTACACTGCTTTCCAGTGGGGATACAATACCATTATCTTTTAATGCTGATTGCTGAGAATGGAGCCTGAGTTGCTAAAAGTACTAGCTCATGTGTTGTTGCTTGTTGGGATGCTTATTAAAGAACAAGGACACAAGGTTTTGAAAGTGTTATCTAAAAGAGAGGTCATGAATCATGTTTGAAACCTACAATTTGTGTGTTTCAAATTTGTATTTTTCATTTAGAAACTAATTGAATTTGTGTAGAAGAAGCAATGGGCTTTAGAAGGAGAGAAATCTCAGTTCCCTGCTCTTTGTGGTTGTACTTGTCCCTTCTATCTCTCTGGAATGAGATGGAAGATCTAGGAAATGTGGTGCCAGTTTCTGCAATAATCTTTGAGCTATATTATACTCCTGTGTGGCTGTGACATGGTTATTCTTCTACAGCTGCAAATGCTTATTGAAGAAACAAGACAAAGTTTTGAAAAGTGTTTTCTACAGGAGAGGTCATGAATCATGTTTGAAACATAGTTGTGTATTCCACAATTTGTATTTTTCATTTATTTCACAAAGCATGATGGGCTGGTACTTACAATCCATGGGCGTGTAACCATGTATTTTTCATTTAGTAACTAATCAAATCTGTGTAAAACAAGCAAAGGGCTTTAAAAGAAGAGAAGTCTCAGTTCCTTGCTCTTTGTGGTTTTCCCTTCTCTCTCTGGGATGAGATGGAGGATCTGGGAAATGAGGTGCTAGTTTCTTCAATAAATCTTAGAGCCTTATTATACTCCTGTGACATGGTTATTCCTCTACAGCTGCATCACCTAATGTTCTGCTGCATCATAGTTGCATTTGATGTTTTGTCATATTCTGTTCTATCAAAATAAAGCTCATTATTCATGCTACTATAGTTGTATTTTTAGGTAAAATCATGCATAAAAATGGATTTACTATTATTAGGACAAGTTTTTTGCATTATATTTAGGTGTATATATTACAAATTCGATTCAACTTTCACAAGTAGTATCATATATTCGGTATCGGAATAAGTTCATTGGTAACACTCAGATAATGAAAAATATCTTATTGTCAGTATTTTTTATGACTTCTAAAGTTTGATCTGGTAAGTGAATGTTCATGTTTCCAATTTTTCGAAACAGGTCTTGGTTTTTCTGAATGATGTCTTTGACACTCTCCTAAGGGCGCTATCGGATCCCTCCGATGAGGTATCTCTTATTGCTTTTATTCTTTTTCATTGAGTTTGTCATGCTGGTTTGCTTTGCTAGGTCTAGCCATTGTTCTAGCTTCTGATGGACAAGTGATAATAATAGCCAATACGACTTTTCTGGTAGCATTATGGTTGTGTTTTCCAGGCATGTGCTGACTTTCAAAAGTTCACTTAGGTTTTGTGCATTAGCTGTGGCCTTTGTTTTGTTCCCCTAGCGTAGTTTCTTGGCAAATTTTGGCCGTAATTCATCCTTCCCTTTGCACTCAATACCCGTGATTCTTTTTGGCACCCCCTTCTTGATTCTTCTGGAAATTTTACAGCTCTACATGACTCCTTCATTCTTGTTTCCAGATCATCCTTAACCTAATTATCAATCAGTTGAAAAAAAAGAAGAATAAGAATTAAAATCTTACCTCACATTAATCATTTTTTTAATCCATTGTACTATTTTAAGGCTGGCAAATATTTGCTGCTTGAATGATTTCTAAAAGTGCTCTAAACTGCATACATGATATTTGATATTTCCTGCATTCATTGCCACAAATATTCACTTGTTTTGGAGGATGAATGCGAAAAGTTTATTCTGGACTCTTATTACCTTACTAGTTTTTGGATACGCGCGATGCACATGTACTATATTTCAAGGAGTAAAAGTTTATTTAAAATTTGTGTTTGAGATATAAAATAGAAGAGTAAGTCGATGATGGATATTATTTTTCCTTATTGATGATGAATGTTAAATCCTATATAACTAACTCAGTAAAAGATGAAATTGCCCCTCAATCATCCGTCAGTTATTCAACTTATAATTTGTTCTACTTTTATAATTCCATCATTTTAATTTTACAAATTATCATACTACCTTTTTAGTTTCAGTACGAGCATATGACTCTTGAAAATCTAAAAGTTTTGGAGGATAGAACATATAAGTAGGCAACAAATATTCCACGAGCTTCAAATGAACAGACCAAACCCCACTTCGTGGGATTTCACAGGGTATGCTTCAGATGAACAGAAAATCAAAGTTCCATGAAAATCATAAAAAGACTATTGAAAGATGACGTATACACTGAGTGTAAAAAATAGTTACAAAATCAATTTATTTATTCCCTTCGCCCCATTTTATATGAAAGTATTAATGATTGGGGAGTCAGCCGATTTTTCTTTGACTATAATTTTCTCAAACTTATTTGAATTATTTTAAATCATTGACAATGTTGACTTGTAGTTCGTGTAACTTTCAAGAATATACCCGAATTCATAGTACTCCCATGCTAATTCTTCCAAAGAATTAATTAAAATTAAAAAGGAAAAGCAAAACAAAACCAATTTCATGAAAGAAAAAATGATAAGAAAATTTAGTCACAGAAATATCTGAAAGGGAGACACTTGATGGTTTATTACTCATATATAATAGTAGCTCGATCATCAAAGAACATAGGCGAGGAACTTAGAAAGGCTTAAACCAACTTAATAGCTGTAAATACAAGTAAACAAAGAGACCAAAATAGGAAATGTCTTTTTGGCATCATTAATATGACTGATCATTATCCTATATCAAGGTATTTATGTTCCCTTCGCGTTGTTTGGGATTGAGACTTACATGTTGGAGTTCAAAAAGTCTTGTCAGTGAAAGCAAGGGGTTTGCTTTTTGGGTCTAGCTCGTTGCACCGGGCTTGCCTAGTGTGGGTTATCTCTCCTATGTGGTCGAGCTATTGCATAGGAGCGGGGGTTTTACCTTGTGTACACCTAAAGGGTAGTGGCTGTGGGTTTCACTTGTCATAAAAAAAAATTAAGGTATTTATGTTTTTGTATATTATATAATTATTTAATATATATTTTAAATGGACATAAATGTCCATCAATATTATAGGGATATTATCGTTTTTCAACTTTAGACTTAAAACTTTCCCGCTTTCAGTATAGTAAGATGATTTAAAAAATGATGTTTGACCCTTATTACCTGATTTAAAGAACCATTATGCTTGACCTTTGTTAATCTGTCTTGAAATGAAAGAAAGTTAAAGATGAAATAAGATAATGGGTTAGATGTTCCAATAAACATTGCCTCTCAGTCAAACTTTTGTTTGAGATTGCTGAAGTCATCTTTCTAACTTCCAAATTTAAATGCTCGTCTCAAATGAGTCTAGACACCCACTATTCCGCAGGGTGATTTTAGAGGGTGCTTCCTGCTATTTTTGATTGTTCTGAGTCTTCTTTAAATTCTCTTCCAGGTAGTGCTCCTGGTTCTTGAGGTGCACGCATGCATAGCTGAAGATCCGCAACACTTCCGGCAGCTAGTTGTTTTCCTTGTTCACA</genome_strand>
        <mrna_strand>TCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATG...................................................................................................GATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGG.............................................................................................................................................................ATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTT.....................................................................................................................................GTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACATCGGTCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGTTTTTCTGAATGATGTCTTTGACACTCTCCTAAGGGCGCTATCGGATCCCTCCGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGCTCCTGGTTCTTGAGGTGCACGCATGCATAGCTGAAGATCCGCAACACTTTCGGCAGCTAGTTGTTTTCCTTGTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247428" ref_strand="+" ref_description="SGN-E247428 [cLEF-46-N22]">
      <seq>tccggatattgatatgctcggttttcttcctgattttcttgatggattatttaatatgctgagtgattctagccatgaaatacggcaacaggctgattctgcgctttcagagtttttgcaagagattaagaattctccatctgtagattatggccgcatggctgaaatactagtgcaaagggcaggctcacaggatgaatttactaggctgacttctatcacttggataaatgaatttgtgaaacttggtggagatcaacttgtcccttattatgctgatattctgggagcaatattgccttgtatatctgataaagaagagaaaataagagttgtttctcgtgaaacaaatgacgaacttcgtgcaattgaggctgatccagctgagggttttgatgtaggagcaatcctctctgttgctaagaggcagttgtctagtgaatgggaggcgacacgtattgaatcattacattggatgtggaccctgcttaatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="33866" stop="40772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34166" g_stop="34209" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34210" i_stop="34308" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34309" g_stop="34403" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="139" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34404" i_stop="37505" i_length="3102">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37506" g_stop="37592" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37593" i_stop="37749" i_length="157">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37750" g_stop="37857" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="334" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37858" i_stop="37990" i_length="133">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37991" g_stop="38082" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="426" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38083" i_stop="40400" i_length="2318">
            <donor d_prob="0.898" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40401" g_stop="40472" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="498" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E247428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34166" e_stop="34209"/>
          <exon e_start="34309" e_stop="34403"/>
          <exon e_start="37506" e_stop="37592"/>
          <exon e_start="37750" e_stop="37857"/>
          <exon e_start="37991" e_stop="38082"/>
          <exon e_start="40401" e_stop="40472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATGGTAATTTCTTGTTTTTCAAAGTCAAAACCTTCTTATCACGCAACTCAATGTTCTAAATTTGTTAACTCATGTGATTTCTCTTGACTTGATGAAGTGCAGGATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCAGTAAGATCTCTGTCATGTGTGGTGTGTTATATTTTTTAATGCTCCCAAAGGAAAATAAAATTTTGAACTTGCAACTTTTTTCCTCTGCTAGTATATTGAGAGTTGAGGCTCGGATGAAAGATATCTGAATATATGTTTGTCCCTCAACCTGCAACTTAAATTTACTAATTTTTGTTTAGTAATTTGTTTCGCTTTCCATTTGTATTTAAGACAGTTGTTCTTTGCTCTGCTTTTGTATCTCCATCCTTTTGGGTTAGTAAGATCCTTTTTTTTTTGACAAAAATCTTAAAGCGTTTTTAACTAGTTATTGTGCATGTGTATACCATATCATCAATATTGTTGAAGTGTGTAACCATCTCATCTAAAAACTTAAGCTAAGCTTTTAGATGAGATAGTCACACACTTTAATATGGTACCAGAGCAATATGGTATCAAAGCAGGCAGAGGTCATGAGATCAAATTTCACCGCCACCCAAATCAAAAAGAATTTCCACGTGCTTGGCCATGAAAAAAAATCAGGCCAGCACGTGAGGGGACGTGTTGAGAATATAATTAAATAATTAAAGTGTGCATCTCTAACAGCTTAAACTTTTAGCTGAGATGGTCACACACTTCAACAAATATAATAGAATTTGTAACAAAAATAAAAAAATTTCTTCTTCATCTAAAAAAACAAAACAATAAAATACATTTTCACTGATATATATATATTTATATTTGTATATATGTATTTCTGAAGACATTTGTTCAAGTTATAAAATTGAAATTGAAATTGAAATGGCGTCATTACATAATCCTTGACCTCTCCCATACATAAGGCAGAAAAGAGGAGTTTTTGACCAACTTCAGCTACACTATTGGTTATAGTAATGGAAGCAACTTCAGTCTTAGTAGCAGTATGAATATGAATATCATTTGTTAGGAAGTGTTTGTATGGTAAAAGGAGTAAGTCTAGTATTAGAATCTCTCAGACCTCATTTGTTTGCACTTAATGCAGGTATTAACTCTAATCCTTCCGATCTCGGTCATTTAGTGCTTTTGTTTTTTTAGGTTTGAATTTTTTTTTGGATGACTGTGGTGTTATGGCCAGGTTTCGCGCACTTCGACTAATTCCACGGGATACATGCCACCTCCCACTAGCAATAGGTACTAGGTAACTCTATCTAGCAAAGCTAGGACAGATAGGAAGAAATAAGAATCACCTAGTGTTTTTTTGTCTCCCTGGGAATTGAACCAAAAAGCTCATGGTTCTCAATCACTTCATTGACCTCTGGGCCACAATCTGAATGATTAGGTGTTGTAATAAGGGGCCTTGTAGTAAAGTCTTAATATCATTAAGATGTCTATTCAAGGACTACTACAAATATGAGTTCACCAATCCCATCCATTATACCTCTACCTCCATTGTCCACAATTATCAACTGCCTATGCCACCGCCTATCATTATCAGATAGCACCACCCACTACCCACAACCACCATCCTCAACCATAACCACCACCACTGTCAATCACTACAATATGTCACCATCATCAACCACTACTGCTAACAACCATCAACACTAGCTAACCACAACACCACATTAGCTAACAGCCCAACACCATAACCAATCGGCACCATAACCACCACTGCTAGCCATCAACACAACCAACCTCCATATAATTTTCTTAAAATATTTTGTTGATATCGTATTAGACTAATTTAGTATTTAATTTAATTTATATTTATTTTAAATGAAGAAGTTTTTTTTTTGAGAAGGTAATATTTGTGTATATTGACAAGCTCTATATACTCAGATGTTGCAAAAATAGTCTTAATTATATATCATTCATATCTTAATATAACATCTAAATAGTTAGTTGTGTAGTCATATTCAAACATCTAAATCTTAATCCACATCTTAATATCCAAATATTTATTCAGTTTCAAATGTCTCAATTTTAATACAAACAAATGAGACTTCAGTATAGAACTAGATGGATCACAACTAATCTTTCAAACCAGTGTCAGCCCAAACTGAATCTCTTATCTACACAAGAAAAAAAAAGGAACAAACTAAAGAGGGCTTCTGATCCATAATAATGGATATTTGGCTCCTTCAAATAGTTCAATATCATGAATATGTTGCTAATATTTACTCAATATTCTTCCAAAATATAGCACTTAATTGCCTAGCCACAATAAAATCACACTCCCTGCATCATCGTCTATATAAAATATTGATGACCAATCTAGTACTTTGTCGAAACCACTAGCCAACCTGAGCCAGCCGAAAGAGCATAGCTAATACATCCTCCTTTTGCCAGTTCAGTTTGAAATTAGGTCTTAGGAGCTCTTATATTGTTATTGCTGCACTTGAGCCGGGTTCTTTCAGAAACAACCTCTCTATCTCCATGAGGTAGTGGTAAGATCTATGTTTATTCTACCCTCCCCAGGCCAATCTTGTGGGATTTCAATGGGTATGTTGTTGTACGAGCTCTGATATAGTTGTTTTCTTTTAAAAAAATATATATGTAGGGGAGAGGGAACGGGAAATGAGGGAGGGGATTGTAATGTGGTAATCGAACCCCCTTACCAATAAGGTGAAAGTTCAAGTAACCAACCAATAGAACTACTAGATCCCTCTAGCTCTAATATAGTTGACTCTATTGCATTTCTAATTATCTTAGCTCAAGATTTAGTTTTAAAATGGCAGGACAAGTTTTATGGGACCGGATTATGTTAGAGAAAGAGAGAAATTGAAGAGGTGTCATCAATGTATACCTTATTTGTCTAATTTCTGTCCTTCCATGTGTCCAAATAATGTGTCATTAAATATATCAGTCAAGAGTGACCATTCAGATATACTCAAATGAATTTGATTCATATGGAAGTACTTTTTACCACTCTATAATTCTCGGTATTTTGAGCACAAAAAAGAGAAGATTGGTTATTGTAGTGATTTGTGGAGAAATAATATGGTTCTTGAAGGAAATATTTGTCATCAGTATTACAAGGATGTTTTTGTCTATCAATATTTAGTTTGATGCTTTCAACTTTTATAATAATGTATAGATTCTTTTTGTCCTTTGTTAGTTTCTAACTTGACGAATGCTGCTCTTAAGTCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGGGTAAGTATGTTGATATGCATGTTGCTTGTGTACCATGTTATCCTGCTTTCTATTGACCGATATTGTGTCTCTTGGCTACGATATCTTCTGGTGTTAACTATATACTAGTGTTTTAACTTGTCAAATCTGTTTGAATAGATTATTTTGTGCCATGCAGATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTTGTAAGTGGAGATGGTCCCCTTTTCCTTTTATTGTATTTGTGTTTTCCCCCCTCTAGCGCTACCTTTCTTCGTTGTTTTTGCTTCTTTGTCTGTCACTCTCACTTTCCTATTCGTCTGTGCTTCTTCCTTTTAGGTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAGGTATAAGTTACTTATTGAGGGATATTTGGATTGTGAAGATTTGAAGAAGTTGAAATGTCTGATAGTTTATAGTACAGTAGATAATCAATTAAAGAATTCACTAGTTTCATTAAATAATGGTAGTTGGCTTTTTGTTGAAATATGATTTTTATAATAGCCAAATACTTCTGACTATAGAACTATGACCTTAATACTTAAATTTTTATGTTCTTTGTGTTTGTTAAGAAATGGATCTTTGGCCTAACTCAATCCCAAAACTGATTGCCCAATATTATACAAGGAGACAACAACCTTTTGCCTTGAGCAATGTAGGACTTGACACCCTCCCTCACGCCTGGACTACTGTAGAATGGCTAACAACATGGGGGCTCAACATTGCAAAACCACATCAACAAGGATCAATGGATCCAGACCAGATACCATGTTAAGTTATGGACCTTAGGCCTATCTGGTAGGGTCTTTGATACGGATCTAGTTATGTGACGCTGCAAGATGAAATCAAATGTTCTTATGCTACGACCTATGGTGCTGGTTCGTTAAGAGAGATTTCTCGAGTTTAAGTACTCAAAAACTGGAATAGTTTTTTGCTTATCTTTCCATTGAATTCAAATAACTTTAAACACAACATTGGTGGAGTAACTACCCACCTAATAACAAGGAAATAACTTCCTACTACTACTAGAATGAGAAAGTGGAGTAATAACCTCCTATAAAGAAACAAGAAAACATAATTAATAGATAAGTTGAAGTATTCTACTTTTAATTTCTTTAAATTTTCTTTGGTAGACTAAAGGGATGCTAGCACTATATCAATCTTTAATGCTAGCTCATGAGAGGATGATTAGCCAATATCATATTAGGAAACCATAACTCAGTTCAGAAATTGACAAGCTCTGTTGGGATGTGGGCCATTTCTCTTCCCTGCCTTCCAACTAATTTCTAGCAAATAGGTTTATTTATTCTATTAGCTACTCTTCCTGATTCGGGTGTCAATCTCATGTTGATCTCTTCTATTTTCCTGATACGGTAAAGGTTTCATTAAAGGAAGTACCAAAAAGGTACCCAAAAAATCTTACAAGCTCTAGCATAGCTGTATCAGTAACATTCCCAAAACACCTAGAAATTCCATAAGCTGATCTAAGTTATCCACTATATCTCCCGTATCCTGCAAGTACAAATTTTCAGGACATGAATTCTTTGGTAAATCTAGGTAACTCCTTTGGTTCTCAAAGCATCTCTTATTTCTTTCCAACCAAATGGTTCAAGAGATCCAAAAAGGTATAGTATTTTAGATTGTCTTAAGATCTTTCTTGACTTTCTGAGATTGCCAACATTATCCTGCTAATGTCTTGTCCCTTTTTATCTCTATTGCCTCTTGTTTGATCTTCATGAGGCAACCATTGCCATGTGTAAGATCAGTGGATGTGTAAGAGTTATGTTTCAAAAGCAATTACTTAGACTGGAAAGTAGAGAGTATTCTTTTAGTTACAGGAGTTTGAACAGGTGTACTACATGGCTGATGAGAAAGACTTTCTGGCTTTTCACTGCACATAGAAGTGGCAGATTCTCAGTGAACTCCTGCTATTGGAACCTTGACTCTGGAGCCTTCAACTTCCAGCAATGACTTGGAAATTGATTTAGGGAACTAAATCTCCTCAGACAAGAGCTTATCTTTTGGTGTTAGCTCATGGTGCATGTCCAAACAAATTTGCAAAAAGCAAATGCAGTGAAACAGATGTTTTTGTGTGGAAAAGAAATCGAGAGTAGCAAACTCTTATTTTTGCTTTGTACTGTAGCTGGATAATTGCCGAACCTGCTTTTGAATAAATTTGGGTGATATGGGTGATGCCAAATACTATGATGGAACTCTTGTGCCGCTGGACGGGATACATGTGTATGAATGAACCAAGGAACTTATGGATAGAAACCCAGCTTGCCCGCGCTGGGTGGTATGGAAAGAGAGCAATCTGAGACACTTGACAGAATATACAGTTGTACATATTATTAAACATGTCGATGCCTAGATATGGTAGCTCTCGGATGTAATTTTCACAATGCATGAAAATGCCAAAATGGTACAATTCATTTGTTCTATGCAACAGTGAACATGCTTAGGAAATGTTTACGACCCTTTTCTACTGCCTGTATACTTGGCTATCAATAAATTACATATAGGAAAAGCTTACCAATTTAATAATGTGATTGGATTATTTATGAAAATCAAAACATAACAGAGTTTGTGATAAGAATAGTTATATCCAAGTAGCTATATGTTATAGTATTGCTTAGTTAACTTTCTGTCTCAATTTGTTTATCAGGCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACA</genome_strand>
        <mrna_strand>TCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATG...................................................................................................GATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGG.............................................................................................................................................................ATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTT.....................................................................................................................................GTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251355" ref_strand="+" ref_description="SGN-E251355 [cLEG-23-B2]">
      <seq>tgaaacttggtggagatcaacttgtcccttattatgctgatattctgggagcaatattgccttgtatatctgataaagaagagaaaataagagttgtttctcgtgaaacaaatgacgaacttcgtgcaattgaggctgatccagctgagggttttgatgtaggagcaatcctctctgttgctaggaggcagttgtctagtgaatgggaggcgacacgtattgaatcattacattggatgtggaccctgcttaatggacatcggtccgaggtcttggtttttctgaatgatgtctttgacactctcctaagggcgctatcggatccctccgatgaggtagtgctcctggttcttgaggtgcacgcatgcatagctgaagatccgcaacacttccggcagctagttgttttccttgttcacagctttcagcatgatcactcactcctcgagaaacgtggggctttgataattcgacggctatgtgtacttctaaatgctgaaagagtttaccgtgaactgtccacaatacttgaaggagaatcagatttggactttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="37463" stop="44659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37763" g_stop="37857" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37858" i_stop="37990" i_length="133">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37991" g_stop="38082" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="187" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38083" i_stop="40400" i_length="2318">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40401" g_stop="40482" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="269" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40483" i_stop="41722" i_length="1240">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41723" g_stop="41788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="335" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41789" i_stop="44024" i_length="2236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44025" g_stop="44140" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="451" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44141" i_stop="44253" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44254" g_stop="44359" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="557" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E251355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37763" e_stop="37857"/>
          <exon e_start="37991" e_stop="38082"/>
          <exon e_start="40401" e_stop="40482"/>
          <exon e_start="41723" e_stop="41788"/>
          <exon e_start="44025" e_stop="44140"/>
          <exon e_start="44254" e_stop="44359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTTGTAAGTGGAGATGGTCCCCTTTTCCTTTTATTGTATTTGTGTTTTCCCCCCTCTAGCGCTACCTTTCTTCGTTGTTTTTGCTTCTTTGTCTGTCACTCTCACTTTCCTATTCGTCTGTGCTTCTTCCTTTTAGGTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAGGTATAAGTTACTTATTGAGGGATATTTGGATTGTGAAGATTTGAAGAAGTTGAAATGTCTGATAGTTTATAGTACAGTAGATAATCAATTAAAGAATTCACTAGTTTCATTAAATAATGGTAGTTGGCTTTTTGTTGAAATATGATTTTTATAATAGCCAAATACTTCTGACTATAGAACTATGACCTTAATACTTAAATTTTTATGTTCTTTGTGTTTGTTAAGAAATGGATCTTTGGCCTAACTCAATCCCAAAACTGATTGCCCAATATTATACAAGGAGACAACAACCTTTTGCCTTGAGCAATGTAGGACTTGACACCCTCCCTCACGCCTGGACTACTGTAGAATGGCTAACAACATGGGGGCTCAACATTGCAAAACCACATCAACAAGGATCAATGGATCCAGACCAGATACCATGTTAAGTTATGGACCTTAGGCCTATCTGGTAGGGTCTTTGATACGGATCTAGTTATGTGACGCTGCAAGATGAAATCAAATGTTCTTATGCTACGACCTATGGTGCTGGTTCGTTAAGAGAGATTTCTCGAGTTTAAGTACTCAAAAACTGGAATAGTTTTTTGCTTATCTTTCCATTGAATTCAAATAACTTTAAACACAACATTGGTGGAGTAACTACCCACCTAATAACAAGGAAATAACTTCCTACTACTACTAGAATGAGAAAGTGGAGTAATAACCTCCTATAAAGAAACAAGAAAACATAATTAATAGATAAGTTGAAGTATTCTACTTTTAATTTCTTTAAATTTTCTTTGGTAGACTAAAGGGATGCTAGCACTATATCAATCTTTAATGCTAGCTCATGAGAGGATGATTAGCCAATATCATATTAGGAAACCATAACTCAGTTCAGAAATTGACAAGCTCTGTTGGGATGTGGGCCATTTCTCTTCCCTGCCTTCCAACTAATTTCTAGCAAATAGGTTTATTTATTCTATTAGCTACTCTTCCTGATTCGGGTGTCAATCTCATGTTGATCTCTTCTATTTTCCTGATACGGTAAAGGTTTCATTAAAGGAAGTACCAAAAAGGTACCCAAAAAATCTTACAAGCTCTAGCATAGCTGTATCAGTAACATTCCCAAAACACCTAGAAATTCCATAAGCTGATCTAAGTTATCCACTATATCTCCCGTATCCTGCAAGTACAAATTTTCAGGACATGAATTCTTTGGTAAATCTAGGTAACTCCTTTGGTTCTCAAAGCATCTCTTATTTCTTTCCAACCAAATGGTTCAAGAGATCCAAAAAGGTATAGTATTTTAGATTGTCTTAAGATCTTTCTTGACTTTCTGAGATTGCCAACATTATCCTGCTAATGTCTTGTCCCTTTTTATCTCTATTGCCTCTTGTTTGATCTTCATGAGGCAACCATTGCCATGTGTAAGATCAGTGGATGTGTAAGAGTTATGTTTCAAAAGCAATTACTTAGACTGGAAAGTAGAGAGTATTCTTTTAGTTACAGGAGTTTGAACAGGTGTACTACATGGCTGATGAGAAAGACTTTCTGGCTTTTCACTGCACATAGAAGTGGCAGATTCTCAGTGAACTCCTGCTATTGGAACCTTGACTCTGGAGCCTTCAACTTCCAGCAATGACTTGGAAATTGATTTAGGGAACTAAATCTCCTCAGACAAGAGCTTATCTTTTGGTGTTAGCTCATGGTGCATGTCCAAACAAATTTGCAAAAAGCAAATGCAGTGAAACAGATGTTTTTGTGTGGAAAAGAAATCGAGAGTAGCAAACTCTTATTTTTGCTTTGTACTGTAGCTGGATAATTGCCGAACCTGCTTTTGAATAAATTTGGGTGATATGGGTGATGCCAAATACTATGATGGAACTCTTGTGCCGCTGGACGGGATACATGTGTATGAATGAACCAAGGAACTTATGGATAGAAACCCAGCTTGCCCGCGCTGGGTGGTATGGAAAGAGAGCAATCTGAGACACTTGACAGAATATACAGTTGTACATATTATTAAACATGTCGATGCCTAGATATGGTAGCTCTCGGATGTAATTTTCACAATGCATGAAAATGCCAAAATGGTACAATTCATTTGTTCTATGCAACAGTGAACATGCTTAGGAAATGTTTACGACCCTTTTCTACTGCCTGTATACTTGGCTATCAATAAATTACATATAGGAAAAGCTTACCAATTTAATAATGTGATTGGATTATTTATGAAAATCAAAACATAACAGAGTTTGTGATAAGAATAGTTATATCCAAGTAGCTATATGTTATAGTATTGCTTAGTTAACTTTCTGTCTCAATTTGTTTATCAGGCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACATCGGTCCGAGGTGAAGACCTAAAATTTAATGACGGTCATCTTGTTTATTCTTTTGTTCAATGAGAACACTCTCTTATGGGCTTACAGAATGGCATAGGAGTTGATATCTTAAACTACACTGCTTTCCAGTGGGGATACAATACCATTATCTTTTAATGCTGATTGCTGAGAATGGAGCCTGAGTTGCTAAAAGTACTAGCTCATGTGTTGTTGCTTGTTGGGATGCTTATTAAAGAACAAGGACACAAGGTTTTGAAAGTGTTATCTAAAAGAGAGGTCATGAATCATGTTTGAAACCTACAATTTGTGTGTTTCAAATTTGTATTTTTCATTTAGAAACTAATTGAATTTGTGTAGAAGAAGCAATGGGCTTTAGAAGGAGAGAAATCTCAGTTCCCTGCTCTTTGTGGTTGTACTTGTCCCTTCTATCTCTCTGGAATGAGATGGAAGATCTAGGAAATGTGGTGCCAGTTTCTGCAATAATCTTTGAGCTATATTATACTCCTGTGTGGCTGTGACATGGTTATTCTTCTACAGCTGCAAATGCTTATTGAAGAAACAAGACAAAGTTTTGAAAAGTGTTTTCTACAGGAGAGGTCATGAATCATGTTTGAAACATAGTTGTGTATTCCACAATTTGTATTTTTCATTTATTTCACAAAGCATGATGGGCTGGTACTTACAATCCATGGGCGTGTAACCATGTATTTTTCATTTAGTAACTAATCAAATCTGTGTAAAACAAGCAAAGGGCTTTAAAAGAAGAGAAGTCTCAGTTCCTTGCTCTTTGTGGTTTTCCCTTCTCTCTCTGGGATGAGATGGAGGATCTGGGAAATGAGGTGCTAGTTTCTTCAATAAATCTTAGAGCCTTATTATACTCCTGTGACATGGTTATTCCTCTACAGCTGCATCACCTAATGTTCTGCTGCATCATAGTTGCATTTGATGTTTTGTCATATTCTGTTCTATCAAAATAAAGCTCATTATTCATGCTACTATAGTTGTATTTTTAGGTAAAATCATGCATAAAAATGGATTTACTATTATTAGGACAAGTTTTTTGCATTATATTTAGGTGTATATATTACAAATTCGATTCAACTTTCACAAGTAGTATCATATATTCGGTATCGGAATAAGTTCATTGGTAACACTCAGATAATGAAAAATATCTTATTGTCAGTATTTTTTATGACTTCTAAAGTTTGATCTGGTAAGTGAATGTTCATGTTTCCAATTTTTCGAAACAGGTCTTGGTTTTTCTGAATGATGTCTTTGACACTCTCCTAAGGGCGCTATCGGATCCCTCCGATGAGGTATCTCTTATTGCTTTTATTCTTTTTCATTGAGTTTGTCATGCTGGTTTGCTTTGCTAGGTCTAGCCATTGTTCTAGCTTCTGATGGACAAGTGATAATAATAGCCAATACGACTTTTCTGGTAGCATTATGGTTGTGTTTTCCAGGCATGTGCTGACTTTCAAAAGTTCACTTAGGTTTTGTGCATTAGCTGTGGCCTTTGTTTTGTTCCCCTAGCGTAGTTTCTTGGCAAATTTTGGCCGTAATTCATCCTTCCCTTTGCACTCAATACCCGTGATTCTTTTTGGCACCCCCTTCTTGATTCTTCTGGAAATTTTACAGCTCTACATGACTCCTTCATTCTTGTTTCCAGATCATCCTTAACCTAATTATCAATCAGTTGAAAAAAAAGAAGAATAAGAATTAAAATCTTACCTCACATTAATCATTTTTTTAATCCATTGTACTATTTTAAGGCTGGCAAATATTTGCTGCTTGAATGATTTCTAAAAGTGCTCTAAACTGCATACATGATATTTGATATTTCCTGCATTCATTGCCACAAATATTCACTTGTTTTGGAGGATGAATGCGAAAAGTTTATTCTGGACTCTTATTACCTTACTAGTTTTTGGATACGCGCGATGCACATGTACTATATTTCAAGGAGTAAAAGTTTATTTAAAATTTGTGTTTGAGATATAAAATAGAAGAGTAAGTCGATGATGGATATTATTTTTCCTTATTGATGATGAATGTTAAATCCTATATAACTAACTCAGTAAAAGATGAAATTGCCCCTCAATCATCCGTCAGTTATTCAACTTATAATTTGTTCTACTTTTATAATTCCATCATTTTAATTTTACAAATTATCATACTACCTTTTTAGTTTCAGTACGAGCATATGACTCTTGAAAATCTAAAAGTTTTGGAGGATAGAACATATAAGTAGGCAACAAATATTCCACGAGCTTCAAATGAACAGACCAAACCCCACTTCGTGGGATTTCACAGGGTATGCTTCAGATGAACAGAAAATCAAAGTTCCATGAAAATCATAAAAAGACTATTGAAAGATGACGTATACACTGAGTGTAAAAAATAGTTACAAAATCAATTTATTTATTCCCTTCGCCCCATTTTATATGAAAGTATTAATGATTGGGGAGTCAGCCGATTTTTCTTTGACTATAATTTTCTCAAACTTATTTGAATTATTTTAAATCATTGACAATGTTGACTTGTAGTTCGTGTAACTTTCAAGAATATACCCGAATTCATAGTACTCCCATGCTAATTCTTCCAAAGAATTAATTAAAATTAAAAAGGAAAAGCAAAACAAAACCAATTTCATGAAAGAAAAAATGATAAGAAAATTTAGTCACAGAAATATCTGAAAGGGAGACACTTGATGGTTTATTACTCATATATAATAGTAGCTCGATCATCAAAGAACATAGGCGAGGAACTTAGAAAGGCTTAAACCAACTTAATAGCTGTAAATACAAGTAAACAAAGAGACCAAAATAGGAAATGTCTTTTTGGCATCATTAATATGACTGATCATTATCCTATATCAAGGTATTTATGTTCCCTTCGCGTTGTTTGGGATTGAGACTTACATGTTGGAGTTCAAAAAGTCTTGTCAGTGAAAGCAAGGGGTTTGCTTTTTGGGTCTAGCTCGTTGCACCGGGCTTGCCTAGTGTGGGTTATCTCTCCTATGTGGTCGAGCTATTGCATAGGAGCGGGGGTTTTACCTTGTGTACACCTAAAGGGTAGTGGCTGTGGGTTTCACTTGTCATAAAAAAAAATTAAGGTATTTATGTTTTTGTATATTATATAATTATTTAATATATATTTTAAATGGACATAAATGTCCATCAATATTATAGGGATATTATCGTTTTTCAACTTTAGACTTAAAACTTTCCCGCTTTCAGTATAGTAAGATGATTTAAAAAATGATGTTTGACCCTTATTACCTGATTTAAAGAACCATTATGCTTGACCTTTGTTAATCTGTCTTGAAATGAAAGAAAGTTAAAGATGAAATAAGATAATGGGTTAGATGTTCCAATAAACATTGCCTCTCAGTCAAACTTTTGTTTGAGATTGCTGAAGTCATCTTTCTAACTTCCAAATTTAAATGCTCGTCTCAAATGAGTCTAGACACCCACTATTCCGCAGGGTGATTTTAGAGGGTGCTTCCTGCTATTTTTGATTGTTCTGAGTCTTCTTTAAATTCTCTTCCAGGTAGTGCTCCTGGTTCTTGAGGTGCACGCATGCATAGCTGAAGATCCGCAACACTTCCGGCAGCTAGTTGTTTTCCTTGTTCACAGCTTTCAGCATGATCACTCACTCCTCGAGAAGTAAATGCTATATTCTTTTTTCGTTTCTTGGGGAAAATTTATTGGTATGCTTTTGTTGTTTGGTTTATTGAAGATTTCTCTGCTGATATCTTAGCTTTCCTAATCTCTTTCAGACGTGGGGCTTTGATAATTCGACGGCTATGTGTACTTCTAAATGCTGAAAGAGTTTACCGTGAACTGTCCACAATACTTGAAGGAGAATCAGATTTGGACTTTGCT</genome_strand>
        <mrna_strand>TGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTT.....................................................................................................................................GTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACATCGGTCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGTTTTTCTGAATGATGTCTTTGACACTCTCCTAAGGGCGCTATCGGATCCCTCCGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGCTCCTGGTTCTTGAGGTGCACGCATGCATAGCTGAAGATCCGCAACACTTCCGGCAGCTAGTTGTTTTCCTTGTTCACAGCTTTCAGCATGATCACTCACTCCTCGAGAA.................................................................................................................ACGTGGGGCTTTGATAATTCGACGGCTATGTGTACTTCTAAATGCTGAAAGAGTTTACCGTGAACTGTCCACAATACTTGAAGGAGAATCAGATTTGGACTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604647" ref_strand="-" ref_description="SGN-E604647 [74784]">
      <seq>ccaattggcaatggataagcctctgcctgttagctcagtcataccaggcatgcaagttctggtagttcacgtctttgttgaaagaagacatcaatgtgaagtttcttagtgcaactacataagttgatccaccttctggagactccaacctttgcttaccttaggcttcagcttcttgaacctggaagatacatatggttattaaaagcatatatggtctttgatgttgttgccgcagcaaagtgcagccttcaagattcttcgtactcggttgaaaactgttccttcatactccttcaaggaagagaaagttgcacgaacatcgtctgggattccatttttcaatgncggaggtggattacaaatttccgatgatggcaacccaaatgagaattcacatgatatgcataacggaataaactttggttctaggctgaagcattttaagcaaattcagcagcagcatcgtttgcacttaaagtcagagactcaatcacgatttagttctgcttcatcaatgaaggagttatgaagaccagaagaatcaaaacaatctgccgcagcaacagacttgaacgggccttcttcaagcgtatggcgtagagccccagtacagttgcaactttgattgtttactctttctcctaatcaaggtttcttatacagcaatcttgatttgctttctttttctttttttggaaagcatagtcaagctccgctaagttgtaaattgtatatctagttatttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="44421" stop="48241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44721" g_stop="44756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44757" i_stop="44874" i_length="118">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44875" g_stop="45003" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="171" r_length="133" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45004" i_stop="46132" i_length="1129">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.151" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46133" g_stop="46201" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="238" r_length="67" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46202" i_stop="46802" i_length="601">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46803" g_stop="47087" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="523" r_length="285" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47088" i_stop="47709" i_length="622">
            <donor d_prob="0.930" d_score="0.96"/>
            <acceptor a_prob="0.823" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47710" g_stop="47941" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="753" r_length="230" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E604647" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604647" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44721" e_stop="44756"/>
          <exon e_start="44875" e_stop="45003"/>
          <exon e_start="46133" e_stop="46201"/>
          <exon e_start="46803" e_stop="47087"/>
          <exon e_start="47710" e_stop="47941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAA-TGGCAATG-ATAAGCCTCTGCCTGTTAGCTCAGGTAAGCCTTACATCCTGCAAGTTTTAAGGCATTCCTCATTCCTCATGCCTGTAGCAACTATCAAGCATTTGTTACTGTTTTTTCACAGTGAATATAATGAGCTCTGTCTTTGTTACAGTCATACCA-GCATGCAAGTTCTGTTA-TTCA-GTCTTTGGTTGAAGAAGATATCAATGTGAAG-TTCTTAGTGCAACTACATAAGTTGATCCACCTTCTGGAGACTCCAACCTTTGCTTACCTTAGGCTTCAGGTGTTTTGAATTTCTCCTTTTATTGATTGTGAAACCTAGAATTTTGAATTTATTTTATCATTTAAGATTCTTTATGATCCAGAAAATAAACATATGTATGTTCGTAATTCCTTTTGCGCTGGAGTTCTCCCGGAAAAGGGAATCTAGTACCAGAGAAACCTGAGTGTCTCATAACTTCTAAGAATATATGCTTATCTTTTAAGCGGTAGATTGAGGGAAAAGGAAATACATATTCTTTTTAGAGTAGATCAATTCAATTTTTGGTCGTGAAAGCTCTGTTCTTTTCTTATAGCCGACCCCACCTAGTTGATTGAAGTGTAACTGTTAGTTGTTTTTAAAAGCGGTCTTCTTTGCATTTAGCGTCTTTTGTGTAGTGTGCAAACAAGGCTTGTGAAGAAATTGCTGCTCCAATTTCCATTTGCATACATGTTAAGAAGGCAAACCAGATTGAAATTTTGAAGCTCAATGCATTACTACCAAACTATCTCGACAATCTGCTTTACTGCACCAATGAGAGAAATCGTGTATGAAATTCTGACATCGCTGTTAACAGACTTCAAATTGATGACCTGCCAATGGGCAGAAATAAATATTAAGGTTGGGTGTTGTGTGGTGGTGGTAATGTTATATAGTTGAATGTTATATGCATTAGTTCTGATGATTTGTTCCACAGTTGGGATTTTCATTGTGCCTTTTATGAATTGCCAGCTTTTCCGTGTCTTTTTGAGGAGGCTGCAAACTCATAATTGCTTGTCTTGATACCCTATACTGATTTCTCTTTGTAAGAGGGACATGCATTTTACCTACAAATTGTTGCTGCATTTCTATTTGAAGTCCCTTTCCTCTAGTCATTTGTTGGTGCTCAAAGAACTCTTGGTACTAACTGCAAATATCAGGGTTGCTAAGATTAACTCTTTATATAATATCTTTTTCTATTGCTGTTGATTTATTTGACAAATTGGATTATTTTTGTTTATGTATTTATTTTTAAAAAACCTCTATTGTATTCTGCTTTTTACCTGTTTTATGAAGTTGGTGGTGTTATGATGTACAAGCAATTTTATTGGGTTTCTCTCTTTTTCACGAACAAGTTCTTTTAGGAGTATCTTAGTGGCTCTATTTCTTGCAGCTTCTTGAACCTGGAAGATACATATGGTTATTAAAAGCATTATATGGTCTGCTGATGCTGTTGCCGCAGGTATGTTATGGATTATTTTCTCCATTGGTAACTTAAGTTGAAGGTTATTGCTATCAACCGCATATCAATTCTGATGCATGCCAGGAAAAGTTTGCAGTTGTGCATTTGCTTGTGCAAGTTGAGTTTCTGTTGAATCATATGTTTAAGAGTACTGACAAAAAGCAATCGCCGGGTTGCATTATTTATTCAATCCATTTAGTATTATTATATCCTAAGAGTTAGTATGTCATGGTTATTATTTCGTGAGTTGTTTCCCTTTTTTTTTAATTACAATTTTGGTGTTAGGACTTAGGCTCAAATTGGAAAAACCTTGATCATTCGACCGATACCTGCTACCTACCATCAACAAGGTACTGGGTAACGCCTCATCTCCACTCACCAAGGCTGAGGCAAATTGGAAAAAACGCCTATTGTCATTTCTCTCTACTGGGATTTGCTCATTAGTTGGTTTTTATGTTAGTAACATAGTGAACTACTGAACTCTTTACAAGAGTTTATCTAAAAAAAAAATTCCTGATTATCACTCTTATATGCACCACTTATATGTATTAAGCTGCATATCAAGTTTGCTGATGTAGATATTCTTTATCAATTCATGTAGCAAAGTGCAGCCTTCAAGATTCTTCGTACTCGGTTGAAAACTGTTCCTTCATACTCTTTCAAGGAAGAGAAAGTTGCACGAACATCGTCTGGGATTCCATTTTTCAACGGCGGAGGTGGATTACAAATCTCTGAGGATGGCAACCCAAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAGGTTTGTGTGCTTCATAGTGTCTACTTATTTTGCTGATAATATTTTGGTTGCATATTGCACTCTGATACTTGTCCAAGAGTTAAATACCTGAGGCTAGAAATATCCTATATGTTAAGGTAGTTAATTATTTCCACCGTGATAACTGCTTGTCTCTCTATCTGGGTTGAGTATGGAGAAAAAGAGTTCTTGGACTTTTGGGTTGTGCTTTTTATGTGTCAATGACAAATGATGGGTATATTGGTGTGGGTTTGCATTTGCGATAAACAAGTGCTTTGTAATGAGGATTGTATGTGTTTCAATATTGTGAAATTCCATATCTCTATTATGTGTGCGCCTTTTTTATATCTGGGAAATTCCCGGTGGGCTTCTATCCAACTCCAGTTGGTGCACCAGTTCAGAACTGCTCCTCTACCCTTTTCCCAACTCAAATACTAAACTTTGAGTTTGAGTCCATGATGTGCCTCAACTCACAGATCACATACTTGTGATTCTTTCATCACTGAGCCGAAGCTCTGAGACCCATATACTCTATTATATTGATCATTGAATAAACCTTCCTTTCTTTCCTAAACTTTGCTCTTTGAGTGCGGTAGAATCTTAGCTTGAACCTATCTTAATTCAGGAGTTATGAAGACCAGAGGAATC-AAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTT</genome_strand>
        <mrna_strand>CCAATTGGCAATGGATAAGCCTCTGCCTGTTAGCTCAG......................................................................................................................TCATACCAGGCATGCAAGTTCTGGTAGTTCACGTCTTTGTTGAAAGAAGACATCAATGTGAAGTTTCTTAGTGCAACTACATAAGTTGATCCACCTTCTGGAGACTCCAACCTTTGCTTACCTTAGGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGAACCTGGAAGATACATATGGTTATTAAAAGCA-TATATGGTCT-TTGATGTTGTTGCCGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGCAGCCTTCAAGATTCTTCGTACTCGGTTGAAAACTGTTCCTTCATACTCCTTCAAGGAAGAGAAAGTTGCACGAACATCGTCTGGGATTCCATTTTTCAATGNCGGAGGTGGATTACAAATTTCCGATGATGGCAACCCAAATGAGAATTCACATGATATGCATAACGGAATAAACTTTGGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACTTAAAGTCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTATGAAGACCAGAAGAATCAAAACAATCTGCCGCAGCAACAGACTTGAACGG---GCCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTCTTTCTCCTAATCAAGGTTTCTTATACAGCAATCTTGATTTGCTTTCTTTTTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTAAATTGTATATCTAGTTATTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691944" ref_strand="-" ref_description="SGN-E691944 [LH_Ea07G22]">
      <seq>ttattcagtctttggttgaagaagacatcaatgtgaagttcttagtgcaactacataagttgatccaccttctggagactccaacctttgcttaccttaggcttcagcttcttgaacctggaagatacatatggttattaaaagcattatatggtctgctgatgctgttgccgcagcaaagtgcagccttcaagattcttcgtactcggttgaaaactgttccttcatactctttcaaggaagagaaagttgcacgaacatcgtctgggattccatttttcaacggcggaggtggattacaaatctctgaggatggcaacccaaatgagagttcacatgatatgcataacggaataaactttagttctaggctgaagcattttaagcaaattcagcagcagcatcgtttgcacctaaagtcagagactcaatcacgatttagttctgcttcatcaatgaaggagttatgaagaccagaggaatcaaataatctgtcgcagcaacagacttgaacggggaccaccttcttcaagcgtatggcgtagagccccagtacagttgcaactttgattgtttacttttgctcctaatcaaggtttcttatacagcaatcttgatttgctttcttattctttttttggaaagcatagtcaagctccgctaagttgtatattgtatatctagttatttgttttgtcaaaattcattgagttggaaaaagtggagaaagggatattacttttagcttggatattccaaagctattttaaaaggaaaaaaaaaaaaaccctcgtgccgaattcggcacgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="44597" stop="48320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44897" g_stop="45003" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45004" i_stop="46132" i_length="1129">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.151" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46133" g_stop="46201" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="176" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46202" i_stop="46802" i_length="601">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46803" g_stop="47087" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="461" r_length="285" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47088" i_stop="47709" i_length="622">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47710" g_stop="48019" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="773" r_length="312" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="788"/>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E691944" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691944" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44897" e_stop="45003"/>
          <exon e_start="46133" e_stop="46201"/>
          <exon e_start="46803" e_stop="47087"/>
          <exon e_start="47710" e_stop="48019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCAGTCTTTGGTTGAAGAAGATATCAATGTGAAGTTCTTAGTGCAACTACATAAGTTGATCCACCTTCTGGAGACTCCAACCTTTGCTTACCTTAGGCTTCAGGTGTTTTGAATTTCTCCTTTTATTGATTGTGAAACCTAGAATTTTGAATTTATTTTATCATTTAAGATTCTTTATGATCCAGAAAATAAACATATGTATGTTCGTAATTCCTTTTGCGCTGGAGTTCTCCCGGAAAAGGGAATCTAGTACCAGAGAAACCTGAGTGTCTCATAACTTCTAAGAATATATGCTTATCTTTTAAGCGGTAGATTGAGGGAAAAGGAAATACATATTCTTTTTAGAGTAGATCAATTCAATTTTTGGTCGTGAAAGCTCTGTTCTTTTCTTATAGCCGACCCCACCTAGTTGATTGAAGTGTAACTGTTAGTTGTTTTTAAAAGCGGTCTTCTTTGCATTTAGCGTCTTTTGTGTAGTGTGCAAACAAGGCTTGTGAAGAAATTGCTGCTCCAATTTCCATTTGCATACATGTTAAGAAGGCAAACCAGATTGAAATTTTGAAGCTCAATGCATTACTACCAAACTATCTCGACAATCTGCTTTACTGCACCAATGAGAGAAATCGTGTATGAAATTCTGACATCGCTGTTAACAGACTTCAAATTGATGACCTGCCAATGGGCAGAAATAAATATTAAGGTTGGGTGTTGTGTGGTGGTGGTAATGTTATATAGTTGAATGTTATATGCATTAGTTCTGATGATTTGTTCCACAGTTGGGATTTTCATTGTGCCTTTTATGAATTGCCAGCTTTTCCGTGTCTTTTTGAGGAGGCTGCAAACTCATAATTGCTTGTCTTGATACCCTATACTGATTTCTCTTTGTAAGAGGGACATGCATTTTACCTACAAATTGTTGCTGCATTTCTATTTGAAGTCCCTTTCCTCTAGTCATTTGTTGGTGCTCAAAGAACTCTTGGTACTAACTGCAAATATCAGGGTTGCTAAGATTAACTCTTTATATAATATCTTTTTCTATTGCTGTTGATTTATTTGACAAATTGGATTATTTTTGTTTATGTATTTATTTTTAAAAAACCTCTATTGTATTCTGCTTTTTACCTGTTTTATGAAGTTGGTGGTGTTATGATGTACAAGCAATTTTATTGGGTTTCTCTCTTTTTCACGAACAAGTTCTTTTAGGAGTATCTTAGTGGCTCTATTTCTTGCAGCTTCTTGAACCTGGAAGATACATATGGTTATTAAAAGCATTATATGGTCTGCTGATGCTGTTGCCGCAGGTATGTTATGGATTATTTTCTCCATTGGTAACTTAAGTTGAAGGTTATTGCTATCAACCGCATATCAATTCTGATGCATGCCAGGAAAAGTTTGCAGTTGTGCATTTGCTTGTGCAAGTTGAGTTTCTGTTGAATCATATGTTTAAGAGTACTGACAAAAAGCAATCGCCGGGTTGCATTATTTATTCAATCCATTTAGTATTATTATATCCTAAGAGTTAGTATGTCATGGTTATTATTTCGTGAGTTGTTTCCCTTTTTTTTTAATTACAATTTTGGTGTTAGGACTTAGGCTCAAATTGGAAAAACCTTGATCATTCGACCGATACCTGCTACCTACCATCAACAAGGTACTGGGTAACGCCTCATCTCCACTCACCAAGGCTGAGGCAAATTGGAAAAAACGCCTATTGTCATTTCTCTCTACTGGGATTTGCTCATTAGTTGGTTTTTATGTTAGTAACATAGTGAACTACTGAACTCTTTACAAGAGTTTATCTAAAAAAAAAATTCCTGATTATCACTCTTATATGCACCACTTATATGTATTAAGCTGCATATCAAGTTTGCTGATGTAGATATTCTTTATCAATTCATGTAGCAAAGTGCAGCCTTCAAGATTCTTCGTACTCGGTTGAAAACTGTTCCTTCATACTCTTTCAAGGAAGAGAAAGTTGCACGAACATCGTCTGGGATTCCATTTTTCAACGGCGGAGGTGGATTACAAATCTCTGAGGATGGCAACCCAAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAGGTTTGTGTGCTTCATAGTGTCTACTTATTTTGCTGATAATATTTTGGTTGCATATTGCACTCTGATACTTGTCCAAGAGTTAAATACCTGAGGCTAGAAATATCCTATATGTTAAGGTAGTTAATTATTTCCACCGTGATAACTGCTTGTCTCTCTATCTGGGTTGAGTATGGAGAAAAAGAGTTCTTGGACTTTTGGGTTGTGCTTTTTATGTGTCAATGACAAATGATGGGTATATTGGTGTGGGTTTGCATTTGCGATAAACAAGTGCTTTGTAATGAGGATTGTATGTGTTTCAATATTGTGAAATTCCATATCTCTATTATGTGTGCGCCTTTTTTATATCTGGGAAATTCCCGGTGGGCTTCTATCCAACTCCAGTTGGTGCACCAGTTCAGAACTGCTCCTCTACCCTTTTCCCAACTCAAATACTAAACTTTGAGTTTGAGTCCATGATGTGCCTCAACTCACAGATCACATACTTGTGATTCTTTCATCACTGAGCCGAAGCTCTGAGACCCATATACTCTATTATATTGATCATTGAATAAACCTTCCTTTCTTTCCTAAACTTTGCTCTTTGAGTGCGGTAGAATCTTAGCTTGAACCTATCTTAATTCAGGAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAAC--GGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATTTTAAAAA</genome_strand>
        <mrna_strand>TTATTCAGTCTTTGGTTGAAGAAGACATCAATGTGAAGTTCTTAGTGCAACTACATAAGTTGATCCACCTTCTGGAGACTCCAACCTTTGCTTACCTTAGGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGAACCTGGAAGATACATATGGTTATTAAAAGCATTATATGGTCTGCTGATGCTGTTGCCGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGCAGCCTTCAAGATTCTTCGTACTCGGTTGAAAACTGTTCCTTCATACTCTTTCAAGGAAGAGAAAGTTGCACGAACATCGTCTGGGATTCCATTTTTCAACGGCGGAGGTGGATTACAAATCTCTGAGGATGGCAACCCAAATGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAGTCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTATGAAGACCAGAGGAATCAAATAATCTGTCGCAGCAACAGACTTGAACGGGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAATCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATTTTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369546" ref_strand="+" ref_description="SGN-E369546 [TUS-25-D14](-)">
      <seq>agcattatatggtctgctgatgctgttgccgcagcaaagtgcagccttcaagattcttcgtactcggttgaaaactgttccttcatactctttcaaggaagagaaagttgcacgaacatcgtctgggattccatttttcaacggcggaggtggattacaaatctctgaggatggcaacccaagtgagagttcacatgatatgcataacggaataaactttagttctaggctgaagcattttaagcaaattcagcagcagcatcgtttgcacctaaaatcagagactcaatcacgatttagttctgcttcatcaatgaaggagttatgaagaccagaggaatcaaacaatctgtcgcagcaacagacttgaacggaccaccttcttcaagcgtatggcgtagagccccagtacagttgcaactttgattgtttacttttgctcctaatcaaggtttcttatacagcaaccttgatttgctttcttattctttttttggaaagcatagtcaagctccgctaagttgtatattgtatatctagttatttgttttgtcaaaattcattgagttggaaaaagtggagaaagggatattacttttagcttggatattccaaagctattttaaaaagtttttgaaagatattagaagataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="45868" stop="48346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46168" g_stop="46201" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46202" i_stop="46802" i_length="601">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46803" g_stop="47087" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="319" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47088" i_stop="47709" i_length="622">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="48045" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="655" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="672"/>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E369546" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46168" e_stop="46201"/>
          <exon e_start="46803" e_stop="47087"/>
          <exon e_start="47710" e_stop="48045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTATATGGTCTGCTGATGCTGTTGCCGCAGGTATGTTATGGATTATTTTCTCCATTGGTAACTTAAGTTGAAGGTTATTGCTATCAACCGCATATCAATTCTGATGCATGCCAGGAAAAGTTTGCAGTTGTGCATTTGCTTGTGCAAGTTGAGTTTCTGTTGAATCATATGTTTAAGAGTACTGACAAAAAGCAATCGCCGGGTTGCATTATTTATTCAATCCATTTAGTATTATTATATCCTAAGAGTTAGTATGTCATGGTTATTATTTCGTGAGTTGTTTCCCTTTTTTTTTAATTACAATTTTGGTGTTAGGACTTAGGCTCAAATTGGAAAAACCTTGATCATTCGACCGATACCTGCTACCTACCATCAACAAGGTACTGGGTAACGCCTCATCTCCACTCACCAAGGCTGAGGCAAATTGGAAAAAACGCCTATTGTCATTTCTCTCTACTGGGATTTGCTCATTAGTTGGTTTTTATGTTAGTAACATAGTGAACTACTGAACTCTTTACAAGAGTTTATCTAAAAAAAAAATTCCTGATTATCACTCTTATATGCACCACTTATATGTATTAAGCTGCATATCAAGTTTGCTGATGTAGATATTCTTTATCAATTCATGTAGCAAAGTGCAGCCTTCAAGATTCTTCGTACTCGGTTGAAAACTGTTCCTTCATACTCTTTCAAGGAAGAGAAAGTTGCACGAACATCGTCTGGGATTCCATTTTTCAACGGCGGAGGTGGATTACAAATCTCTGAGGATGGCAACCCAAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAGGTTTGTGTGCTTCATAGTGTCTACTTATTTTGCTGATAATATTTTGGTTGCATATTGCACTCTGATACTTGTCCAAGAGTTAAATACCTGAGGCTAGAAATATCCTATATGTTAAGGTAGTTAATTATTTCCACCGTGATAACTGCTTGTCTCTCTATCTGGGTTGAGTATGGAGAAAAAGAGTTCTTGGACTTTTGGGTTGTGCTTTTTATGTGTCAATGACAAATGATGGGTATATTGGTGTGGGTTTGCATTTGCGATAAACAAGTGCTTTGTAATGAGGATTGTATGTGTTTCAATATTGTGAAATTCCATATCTCTATTATGTGTGCGCCTTTTTTATATCTGGGAAATTCCCGGTGGGCTTCTATCCAACTCCAGTTGGTGCACCAGTTCAGAACTGCTCCTCTACCCTTTTCCCAACTCAAATACTAAACTTTGAGTTTGAGTCCATGATGTGCCTCAACTCACAGATCACATACTTGTGATTCTTTCATCACTGAGCCGAAGCTCTGAGACCCATATACTCTATTATATTGATCATTGAATAAACCTTCCTTTCTTTCCTAAACTTTGCTCTTTGAGTGCGGTAGAATCTTAGCTTGAACCTATCTTAATTCAGGAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATTTTAAAAAGTTTTTGAAAGATATTAGAAGGTAAA</genome_strand>
        <mrna_strand>AGCATTATATGGTCTGCTGATGCTGTTGCCGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGCAGCCTTCAAGATTCTTCGTACTCGGTTGAAAACTGTTCCTTCATACTCTTTCAAGGAAGAGAAAGTTGCACGAACATCGTCTGGGATTCCATTTTTCAACGGCGGAGGTGGATTACAAATCTCTGAGGATGGCAACCCAAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATTTTAAAAAGTTTTTGAAAGATATTAGAAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281365" ref_strand="-" ref_description="SGN-E281365 [cLEL-1-L14]">
      <seq>atggcaacccaagtgagagttcacatgatatgcataacggaataaactttagttctaggctgaagcattttaagcaaattcagcagcagcatcgtttgcacctaaaatcagagactcaatcacgatttagttctgcttcatcaatgaaggagttatgaagaccagaggaatcaaacaatctgtcgcagcaacagacttgaacggaccaccttcttcaagcgtatggcgtagagccccagtacagttgcaactttgattgtttacttttgctcctaatcaaggtttcttatacagcaaccttgatttgctttcttattctttttttggaaagcatagtcaagctccgctaagttgtatattgtatatctagttatttgttttgtcaaaattcattgagttggaaaaagtggagaaagggatattactgggagcttggatattccaaagctattcttaaaaagtttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="46639" stop="48339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46939" g_stop="47087" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47088" i_stop="47709" i_length="622">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47710" g_stop="48043" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="484" r_length="335" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E281365" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46939" e_stop="47087"/>
          <exon e_start="47710" e_stop="48043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAACCCAAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAGGTTTGTGTGCTTCATAGTGTCTACTTATTTTGCTGATAATATTTTGGTTGCATATTGCACTCTGATACTTGTCCAAGAGTTAAATACCTGAGGCTAGAAATATCCTATATGTTAAGGTAGTTAATTATTTCCACCGTGATAACTGCTTGTCTCTCTATCTGGGTTGAGTATGGAGAAAAAGAGTTCTTGGACTTTTGGGTTGTGCTTTTTATGTGTCAATGACAAATGATGGGTATATTGGTGTGGGTTTGCATTTGCGATAAACAAGTGCTTTGTAATGAGGATTGTATGTGTTTCAATATTGTGAAATTCCATATCTCTATTATGTGTGCGCCTTTTTTATATCTGGGAAATTCCCGGTGGGCTTCTATCCAACTCCAGTTGGTGCACCAGTTCAGAACTGCTCCTCTACCCTTTTCCCAACTCAAATACTAAACTTTGAGTTTGAGTCCATGATGTGCCTCAACTCACAGATCACATACTTGTGATTCTTTCATCACTGAGCCGAAGCTCTGAGACCCATATACTCTATTATATTGATCATTGAATAAACCTTCCTTTCTTTCCTAAACTTTGCTCTTTGAGTGCGGTAGAATCTTAGCTTGAACCTATCTTAATTCAGGAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATT-TTAAAAAGTTTTTGAAAGATATTAGAAGGTA</genome_strand>
        <mrna_strand>ATGGCAACCCAAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTGGGAGCTTGGATATTCCAAAGCTATTCTTAAAAAGTTTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273313" ref_strand="-" ref_description="SGN-E273313 [cLEM-24-P10]">
      <seq>aagtgagagttcacatgatatgcataacggaataaactttagttctaggctgaagcattttaagcaaattcagcagcagcatcgtttgcacctaaaatcagagactcaatcacgatttagttctgcttcatcaatgaaggagttatgaagaccagaggaatcaaacaatctgtcgcagcaacagacttgaacggaccaccttcttcaagcgtatggcgtagagccccagtacagttgcaactttgattgtttacttttgctcctaatcaaggtttcttatacagcaaccttgatttgctttcttattctttttttggaaagcatagtcaagctccgctaagttgtatattgtatatctagttatttgttttgtcaaaattcattgagttggaaaaagtggagaaagggatattacttttagcttggatattccaaagctattttaaaaagtttttgaaagatattagcaggtaaaattagcccatgtggttatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="46649" stop="48367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46949" g_stop="47087" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47088" i_stop="47709" i_length="622">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47710" g_stop="48066" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="496" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="506"/>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-E273313" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46949" e_stop="47087"/>
          <exon e_start="47710" e_stop="48066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAGGTTTGTGTGCTTCATAGTGTCTACTTATTTTGCTGATAATATTTTGGTTGCATATTGCACTCTGATACTTGTCCAAGAGTTAAATACCTGAGGCTAGAAATATCCTATATGTTAAGGTAGTTAATTATTTCCACCGTGATAACTGCTTGTCTCTCTATCTGGGTTGAGTATGGAGAAAAAGAGTTCTTGGACTTTTGGGTTGTGCTTTTTATGTGTCAATGACAAATGATGGGTATATTGGTGTGGGTTTGCATTTGCGATAAACAAGTGCTTTGTAATGAGGATTGTATGTGTTTCAATATTGTGAAATTCCATATCTCTATTATGTGTGCGCCTTTTTTATATCTGGGAAATTCCCGGTGGGCTTCTATCCAACTCCAGTTGGTGCACCAGTTCAGAACTGCTCCTCTACCCTTTTCCCAACTCAAATACTAAACTTTGAGTTTGAGTCCATGATGTGCCTCAACTCACAGATCACATACTTGTGATTCTTTCATCACTGAGCCGAAGCTCTGAGACCCATATACTCTATTATATTGATCATTGAATAAACCTTCCTTTCTTTCCTAAACTTTGCTCTTTGAGTGCGGTAGAATCTTAGCTTGAACCTATCTTAATTCAGGAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATTTTAAAAAGTTTTTGAAAGATATTAGAAGGTAAAATTAGCCCATGTGGTTATGTT</genome_strand>
        <mrna_strand>AAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATTTTAAAAAGTTTTTGAAAGATATTAGCAGGTAAAATTAGCCCATGTGGTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>35</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1015" PGL_stop="73"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1015" e_stop="872"/>
            <exon e_start="758" e_stop="687"/>
            <exon e_start="594" e_stop="73"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1015" e_stop="872" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.959">
            <gDNA_intron_boundary i_start="871" i_stop="759" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="758" e_stop="687" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.950">
            <gDNA_intron_boundary i_start="686" i_stop="595" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="594" e_stop="73" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1015" stop="872"/>
              <exon start="758" stop="687"/>
              <exon start="594" stop="156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="588" stop="73"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACGAAAAACTCTTGACCGGGAGCTAGCACGTGCCAAGGTTACAGCTAATAGGGTAGCAACCGTGGTTGCTAATGAATGGAAAGATGCCAGTGATAAAGTAATGCCTGTTAAACAGTGGCTTGAAGAAAGGAAGTTTCTGCAG : GGTGAGTTGCAACAGTTACGCGACAAGCTTGCAATCTCTGAACGAACTGCGAAATCTGAAGCCCAGTTGAAA : GAGAAATATCATTTAAGGCTCAAGGTCCTTGAAGAGACATTAAAATCAACTAGCACAGGCGCCCGCACTATACCAGATGGAAGAAGTTCAAGCAACGGTCCTTCGCGTCGGCGATCACTGGGTGGTGCTGACAACATCTCCAAATTGACCTCCAATGGTATCTTACCCAAGAGATCACCATCATTTCAGCTGAGATCTTCTGGGGCCAGTACAGTGTTGAAGCATGCTAAAGGGACATCTAAGTCGTTTGATGGTGGTTCAAGATCTTTGGACAGGAGTAAAAAACTTCTGAATGGAACAGGTCCAAATTTCAACAGCAGCAAGTCATGTGATGTGTCCAAAGACAATGAGACTGAAAGCAATTCATGGAAAGCGAATCAAGATGAAAAACACAATGACTCGCAAATGGCAAGAACAGAGGATACTGTGCCAGGAGTTTTATATGATTTGCTGCAAAAAGAAGTAATTGCCTTGAGGAAAGCTGGTCATGAGAAGGATCAAAGTCTTAATGACAAAGACGAC</gDNA_template>
            <first_frame> E  R  K  T  L  D  R  E  L  A  R  A  K  V  T  A  N  R  V  A  T  V  V  A  N  E  W  K  D  A  S  D  K  V  M  P  V  K  Q  W  L  E  E  R  K  F  L  Q  :  G  E  L  Q  Q  L  R  D  K  L  A  I  S  E  R  T  A  K  S  E  A  Q  L  K  :  E  K  Y  H  L  R  L  K  V  L  E  E  T  L  K  S  T  S  T  G  A  R  T  I  P  D  G  R  S  S  S  N  G  P  S  R  R  R  S  L  G  G  A  D  N  I  S  K  L  T  S  N  G  I  L  P  K  R  S  P  S  F  Q  L  R  S  S  G  A  S  T  V  L  K  H  A  K  G  T  S  K  S  F  D  G  G  S  R  S  L  D  R  S  K  K  L  L  N  G  T  G  P  N  F  N  S  S  K  S  C  D  V  S  K  D  N  E  T  E  S  N  S  W  K  A  N  Q  D  E  K  H  N  D  S  Q  M  A  R  T  E  D  T  V  P  G  V  L  Y  D  L  L  Q  K  E  V  I  A  L  R  K  A  G  H  E  K  D  Q  S  L  N  D  K  D  D </first_frame>
            <second_frame>  N  E  K  L  L  T  G  S  *  H  V  P  R  L  Q  L  I  G  *  Q  P  W  L  L  M  N  G  K  M  P  V  I  K  *  C  L  L  N  S  G  L  K  K  G  S  F  C  R :   V  S  C  N  S  Y  A  T  S  L  Q  S  L  N  E  L  R  N  L  K  P  S  *  K :   R  N  I  I  *  G  S  R  S  L  K  R  H  *  N  Q  L  A  Q  A  P  A  L  Y  Q  M  E  E  V  Q  A  T  V  L  R  V  G  D  H  W  V  V  L  T  T  S  P  N  *  P  P  M  V  S  Y  P  R  D  H  H  H  F  S  *  D  L  L  G  P  V  Q  C  *  S  M  L  K  G  H  L  S  R  L  M  V  V  Q  D  L  W  T  G  V  K  N  F  *  M  E  Q  V  Q  I  S  T  A  A  S  H  V  M  C  P  K  T  M  R  L  K  A  I  H  G  K  R  I  K  M  K  N  T  M  T  R  K  W  Q  E  Q  R  I  L  C  Q  E  F  Y  M  I  C  C  K  K  K  *  L  P  *  G  K  L  V  M  R  R  I  K  V  L  M  T  K  T   </second_frame>
            <third_frame>   T  K  N  S  *  P  G  A  S  T  C  Q  G  Y  S  *  *  G  S  N  R  G  C  *  *  M  E  R  C  Q  *  *  S  N  A  C  *  T  V  A  *  R  K  E  V  S  A   : G  *  V  A  T  V  T  R  Q  A  C  N  L  *  T  N  C  E  I  *  S  P  V  E   : R  E  I  S  F  K  A  Q  G  P  *  R  D  I  K  I  N  *  H  R  R  P  H  Y  T  R  W  K  K  F  K  Q  R  S  F  A  S  A  I  T  G  W  C  *  Q  H  L  Q  I  D  L  Q  W  Y  L  T  Q  E  I  T  I  I  S  A  E  I  F  W  G  Q  Y  S  V  E  A  C  *  R  D  I  *  V  V  *  W  W  F  K  I  F  G  Q  E  *  K  T  S  E  W  N  R  S  K  F  Q  Q  Q  Q  V  M  *  C  V  Q  R  Q  *  D  *  K  Q  F  M  E  S  E  S  R  *  K  T  Q  *  L  A  N  G  K  N  R  G  Y  C  A  R  S  F  I  *  F  A  A  K  R  S  N  C  L  E  E  S  W  S  *  E  G  S  K  S  *  *  Q  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1015" stop="872"/>
                    <exon start="758" stop="687"/>
                    <exon start="594" stop="73"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERKTLDRELARAKVTANRVATVVANEWKDASDKVMPVKQWLEERKFLQGELQQLRDKLAISERTAKSEAQLKEKYHLRLKVLEETLKSTSTGARTIPDGRSSSNGPSRRRSLGGADNISKLTSNGILPKRSPSFQLRSSGASTVLKHAKGTSKSFDGGSRSLDRSKKLLNGTGPNFNSSKSCDVSKDNETESNSWKANQDEKHNDSQMARTEDTVPGVLYDLLQKEVIALRKAGHEKDQSLNDKDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3302" PGL_stop="1797"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3302" e_stop="3018"/>
            <exon e_start="2926" e_stop="2532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.999" e_score="0.979"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="3302" e_stop="3018" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3017" i_stop="2927" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="2926" e_stop="2532" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3302" stop="3018"/>
              <exon start="2926" stop="2841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3258" stop="3018"/>
              <exon start="2926" stop="2532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3258" stop="3018"/>
              <exon start="2926" stop="2571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTAAATATGAATTATTCATTGAAAGTGAGCTTACCGTAGAAGTTTATAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACAGCAGGTTATACAACGCCGTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAGGACGTCCATGAGGCCAAGCCTTGACGCCGATGAGTTCTTAAACCTTCTCCACGGATCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTTAGAG : ATAAGGACCGAGAATTGTCTGAGGCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGAGAAAAGGCTGTTGAAGAGGTTCTGCTAACTTCTTACTATATGGCATGCTATGAAATTATCTATTTTATGCTTTCTGATATATTGATTTAATTTGTCTATCGTCTGCTAAGTGTTAATAGAGTATGATTTTGAGTTACTGAGGATAAGACGAAGTAAGAAGGTGATATCATTTTCAATTTTGACATCTAGAAAATTGAGTTCAAAGGTCAAGTATAATCACATTTGGAACTGTTGAAAAAGACTGGGTTTGACTAGGAGAAGCATTGAGTGTGAAATGGAAAATGACTTCCATCGCGGAGTATGGAAAGAAATGTAGGAGTTATGAAA</gDNA_template>
            <first_frame> V  V  N  M  N  Y  S  L  K  V  S  L  P  *  K  F  I  D  R  R  W  R  R  F  P  A  I  T  A  T  M  C  D  S  R  R  V  T  Q  Q  V  I  Q  R  R  *  R  Y  Q  L  R  S  R  K  G  R  L  T  G  E  G  R  P  *  G  Q  A  L  T  P  M  S  S  *  T  F  S  T  D  R  I  R  *  N  W  S  L  I  D  W  R  M  N  L  E  :  I  R  T  E  N  C  L  R  L  R  R  R  S  S  H  *  D  C  Q  S  A  Y  E  K  R  L  L  K  R  F  C  *  L  L  T  I  W  H  A  M  K  L  S  I  L  C  F  L  I  Y  *  F  N  L  S  I  V  C  *  V  L  I  E  Y  D  F  E  L  L  R  I  R  R  S  K  K  V  I  S  F  S  I  L  T  S  R  K  L  S  S  K  V  K  Y  N  H  I  W  N  C  *  K  R  L  G  L  T  R  R  S  I  E  C  E  M  E  N  D  F  H  R  G  V  W  K  E  M  *  E  L  *   </first_frame>
            <second_frame>  L  *  I  *  I  I  H  *  K  *  A  Y  R  R  S  L  *  I  G  D  G  G  G  F  R  R  *  Q  L  Q  C  A  T  A  D  E  *  H  S  R  L  Y  N  A  V  D  G  I  S  F  V  Q  G  R  E  D  L  P  E  K  D  V  H  E  A  K  P  *  R  R  *  V  L  K  P  S  P  R  I  G  S  G  E  I  G  A  *  S  T  G  E  *  T  *  R :   *  G  P  R  I  V  *  G  S  G  G  D  Q  V  I  E  I  V  R  A  L  T  R  K  G  C  *  R  G  S  A  N  F  L  L  Y  G  M  L  *  N  Y  L  F  Y  A  F  *  Y  I  D  L  I  C  L  S  S  A  K  C  *  *  S  M  I  L  S  Y  *  G  *  D  E  V  R  R  *  Y  H  F  Q  F  *  H  L  E  N  *  V  Q  R  S  S  I  I  T  F  G  T  V  E  K  D  W  V  *  L  G  E  A  L  S  V  K  W  K  M  T  S  I  A  E  Y  G  K  K  C  R  S  Y  E  </second_frame>
            <third_frame>   C  K  Y  E  L  F  I  E  S  E  L  T  V  E  V  Y  R  S  E  M  A  E  V  S  G  D  N  S  Y  N  V  R  Q  P  T  S  D  T  A  G  Y  T  T  P  L  T  V  S  A  S  F  K  E  G  K  T  Y  R  R  R  T  S  M  R  P  S  L  D  A  D  E  F  L  N  L  L  H  G  S  D  P  V  K  L  E  L  N  R  L  E  N  E  L  R   : D  K  D  R  E  L  S  E  A  Q  A  E  I  K  S  L  R  L  S  E  R  L  R  E  K  A  V  E  E  V  L  L  T  S  Y  Y  M  A  C  Y  E  I  I  Y  F  M  L  S  D  I  L  I  *  F  V  Y  R  L  L  S  V  N  R  V  *  F  *  V  T  E  D  K  T  K  *  E  G  D  I  I  F  N  F  D  I  *  K  I  E  F  K  G  Q  V  *  S  H  L  E  L  L  K  K  T  G  F  D  *  E  K  H  *  V  *  N  G  K  *  L  P  S  R  S  M  E  R  N  V  G  V  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3300" stop="3018"/>
                    <exon start="2926" stop="2769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKYELFIESELTVEVYRSEMAEVSGDNSYNVRQPTSDTAGYTTPLTVSASFKEGKTYRRRTSMRPSLDADEFLNLLHGSDPVKLELNRLENELRDKDRELSEAQAEIKSLRLSERLREKAVEEVLLTSYYMACYEIIYFMLSDILI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3302" e_stop="3018"/>
            <exon e_start="2926" e_stop="2841"/>
            <exon e_start="1975" e_stop="1910"/>
            <exon e_start="1823" e_stop="1797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.991" acc_prob="0.982" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.970"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="3302" e_stop="3018" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3017" i_stop="2927" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="2926" e_stop="2841" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.982">
            <gDNA_intron_boundary i_start="2840" i_stop="1976" i_length="865"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="1975" e_stop="1910" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1909" i_stop="1824" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="1823" e_stop="1797" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3302" stop="3018"/>
              <exon start="2926" stop="2841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3301" stop="3018"/>
              <exon start="2926" stop="2841"/>
              <exon start="1975" stop="1910"/>
              <exon start="1823" stop="1797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTAAATATGAATTATTCATTGAAAGTGAGCTTACCGTAGAAGTTTATAGATCGGAGATGGCGGAGGTTTCCGGCGATAACAGCTACAATGTGCGACAGCCGACGAGTGACACAGCAGGTTATACAACGCCGTTGACGGTATCAGCTTCGTTCAAGGAAGGGAAGACTTACCGGAGAAGGACGTCCATGAGGCCAAGCCTTGACGCCGATGAGTTCTTAAACCTTCTCCACGGATCGGATCCGGTGAAATTGGAGCTTAATCGACTGGAGAATGAACTTAGAG : ATAAGGACCGAGAATTGTCTGAGGCTCAGGCGGAGATCAAGTCATTGAGATTGTCAGAGCGCTTACGAGAAAAGGCTGTTGAAGAG : CTTACGGACGAGTGGTCAAGGGTTGACGAGAAGCTCAAGCTGACTGAGTCTCTTTTGGAAAGCAAG : AATCTTGAAATTAAGAAAATTAATGAA</gDNA_template>
            <first_frame> V  V  N  M  N  Y  S  L  K  V  S  L  P  *  K  F  I  D  R  R  W  R  R  F  P  A  I  T  A  T  M  C  D  S  R  R  V  T  Q  Q  V  I  Q  R  R  *  R  Y  Q  L  R  S  R  K  G  R  L  T  G  E  G  R  P  *  G  Q  A  L  T  P  M  S  S  *  T  F  S  T  D  R  I  R  *  N  W  S  L  I  D  W  R  M  N  L  E  :  I  R  T  E  N  C  L  R  L  R  R  R  S  S  H  *  D  C  Q  S  A  Y  E  K  R  L  L  K  S :   L  R  T  S  G  Q  G  L  T  R  S  S  S  *  L  S  L  F  W  K  A  R :   I  L  K  L  R  K  L  M   </first_frame>
            <second_frame>  L  *  I  *  I  I  H  *  K  *  A  Y  R  R  S  L  *  I  G  D  G  G  G  F  R  R  *  Q  L  Q  C  A  T  A  D  E  *  H  S  R  L  Y  N  A  V  D  G  I  S  F  V  Q  G  R  E  D  L  P  E  K  D  V  H  E  A  K  P  *  R  R  *  V  L  K  P  S  P  R  I  G  S  G  E  I  G  A  *  S  T  G  E  *  T  *  R :   *  G  P  R  I  V  *  G  S  G  G  D  Q  V  I  E  I  V  R  A  L  T  R  K  G  C  *  R   : A  Y  G  R  V  V  K  G  *  R  E  A  Q  A  D  *  V  S  F  G  K  Q   : E  S  *  N  *  E  N  *  *  </second_frame>
            <third_frame>   C  K  Y  E  L  F  I  E  S  E  L  T  V  E  V  Y  R  S  E  M  A  E  V  S  G  D  N  S  Y  N  V  R  Q  P  T  S  D  T  A  G  Y  T  T  P  L  T  V  S  A  S  F  K  E  G  K  T  Y  R  R  R  T  S  M  R  P  S  L  D  A  D  E  F  L  N  L  L  H  G  S  D  P  V  K  L  E  L  N  R  L  E  N  E  L  R   : D  K  D  R  E  L  S  E  A  Q  A  E  I  K  S  L  R  L  S  E  R  L  R  E  K  A  V  E  E  :  L  T  D  E  W  S  R  V  D  E  K  L  K  L  T  E  S  L  L  E  S  K  :  N  L  E  I  K  K  I  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3300" stop="3018"/>
                    <exon start="2926" stop="2841"/>
                    <exon start="1975" stop="1910"/>
                    <exon start="1823" stop="1797"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKYELFIESELTVEVYRSEMAEVSGDNSYNVRQPTSDTAGYTTPLTVSASFKEGKTYRRRTSMRPSLDADEFLNLLHGSDPVKLELNRLENELRDKDRELSEAQAEIKSLRLSERLREKAVEELTDEWSRVDEKLKLTESLLESKNLEIKKINE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23142" PGL_stop="29522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23165" e_stop="23835"/>
            <exon e_start="27254" e_stop="27373"/>
            <exon e_start="28265" e_stop="28394"/>
            <exon e_start="28475" e_stop="28633"/>
            <exon e_start="28944" e_stop="29522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.750" e_score="0.934"/>
          <exon-intron don_prob="0.986" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="23165" e_stop="23835" e_length="671"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.750">
            <gDNA_intron_boundary i_start="23836" i_stop="27253" i_length="3418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27254" e_stop="27373" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.868">
            <gDNA_intron_boundary i_start="27374" i_stop="28264" i_length="891"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28265" e_stop="28394" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="28395" i_stop="28474" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28475" e_stop="28633" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="28634" i_stop="28943" i_length="310"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28944" e_stop="29522" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23165" stop="23835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23165" stop="23733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23233" stop="23457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23644" stop="23835"/>
              <exon start="27254" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23746" stop="23835"/>
              <exon start="27254" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23801" stop="23835"/>
              <exon start="27254" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27254" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27254" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27257" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27268" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27310" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424908" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27336" stop="27373"/>
              <exon start="28265" stop="28394"/>
              <exon start="28475" stop="28633"/>
              <exon start="28944" stop="29452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603529" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="29522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29124" stop="29356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCCACCCCCACAGTGACACCAAATTCATCAAAAGTTTCAGCAAAAGCTCAAAAACGTCAGCTAAATCAACGCTTATCGATGAGGTAATTTATAGAGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGTTGAAAGATTGAATTTTTATCCATATTTTGAACCTTCAAGAAAAAATGGCAACTGAGCCACCAAATTTGATTTCCTCTGACCCCACAACTCCACTTCTACACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCGGTACTTCTTGGTCGGGTCACCGGAAGGCGCGGTGGCGGAGGAGGTGGCGCGTCGTTGTTGGTGAGGGAGACGGCGGCGCGTGAGCTGGATGAGCGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTTTTGTGATTTTGTCATGTGCGGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAG : TTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTCTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTG : GTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAG : GAAGGTGCGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGTACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCA : GAATGTTGCATATGTCTTACCTCGTACGAGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCCACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAGGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGCCACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCTTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTTGGTCCTTCCCCCCAGCTCATGTAAATTATCTTTGGTTCCATTTGTTTCCAATAGGTATACAGGATCCAACTCTTGTAAGTATATGCTATTTTCTTGTGTGTGGTTTATGTCCAGTTTTACTGTGCTCTTTTCTCTAAGAAAACAGAAAAGTGGGTGATAATTTGATATCTAAGTTTTACTCAATTTGTTA</gDNA_template>
            <first_frame> P  T  P  T  P  T  V  T  P  N  S  S  K  V  S  A  K  A  Q  K  R  Q  L  N  Q  R  L  S  M  R  *  F  I  E  I  I  K  I  Q  F  L  L  S  K  K  E  L  K  D  *  I  F  I  H  I  L  N  L  Q  E  K  M  A  T  E  P  P  N  L  I  S  S  D  P  T  T  P  L  L  H  R  R  L  E  N  G  G  R  G  G  R  Q  S  S  L  A  V  L  L  G  R  V  T  G  R  R  G  G  G  G  G  G  A  S  L  L  V  R  E  T  A  A  R  E  L  D  E  R  R  A  D  W  G  Y  S  K  P  V  V  A  L  D  M  M  W  N  L  G  F  V  I  V  S  F  V  I  L  S  C  A  V  D  E  S  P  N  V  P  I  R  L  W  I  C  G  Y  A  L  Q  C  V  V  H  V  V  L  V  W  L  E  Y  R  R  R  S  L  Q  G  G  T  D  V  E  G  N  D  G  E  G  G  E  E  R  N  G  V  L  G  I  G  N  Q  S  S :   F  A  K  R  C  E  Y  M  N  T  M  G  S  L  L  W  W  I  I  G  F  Y  W  I  V  S  G  G  E  I  L  L  Q  N  A  P  H  L  Y  W :   L  A  V  V  F  L  A  F  D  V  F  F  A  I  F  C  V  A  L  A  C  L  I  G  V  A  L  C  C  C  L  P  C  I  I  A  V  L  Y  A  V  G  Q  :  E  G  A  S  E  E  D  L  R  V  L  P  K  Y  R  F  H  I  C  K  N  E  E  K  P  R  V  G  A  G  R  M  V  P  I  E  T  S  S  G  Y  L  A  T  E  R  I  L  L  P  E  D  A  :  E  C  C  I  C  L  T  S  Y  E  D  G  A  E  L  H  A  L  P  C  N  H  H  F  H  S  T  C  I  V  K  W  L  K  M  N  A  T  C  P  L  C  K  Y  N  I  L  K  G  N  D  Q  V  *  S  R  E  N  E  K  H  C  T  L  F  R  V  I  K  A  T  Y  G  S  L  K  H  Y  L  L  N  P  Y  Q  N  R  N  L  L  S  N  *  S  S  F  L  S  C  S  L  S  I  L  R  S  S  L  *  *  I  V  F  C  D  *  K  K  C  S  T  P  R  R  I  K  N  E  E  E  L  V  L  P  P  S  S  C  K  L  S  L  V  P  F  V  S  N  R  Y  T  G  S  N  S  C  K  Y  M  L  F  S  C  V  W  F  M  S  S  F  T  V  L  F  S  L  R  K  Q  K  S  G  *  *  F  D  I  *  V  L  L  N  L  L </first_frame>
            <second_frame>  P  P  P  P  P  Q  *  H  Q  I  H  Q  K  F  Q  Q  K  L  K  N  V  S  *  I  N  A  Y  R  *  G  N  L  *  R  *  S  R  F  S  F  C  *  A  K  R  S  *  K  I  E  F  L  S  I  F  *  T  F  K  K  K  W  Q  L  S  H  Q  I  *  F  P  L  T  P  Q  L  H  F  Y  T  G  D  S  K  T  A  A  E  G  V  V  S  H  H  L  R  Y  F  L  V  G  S  P  E  G  A  V  A  E  E  V  A  R  R  C  W  *  G  R  R  R  R  V  S  W  M  S  E  E  L  I  G  V  I  R  S  R  W  W  R  W  I  *  C  G  I  W  G  L  *  L  C  L  L  *  F  C  H  V  R  W  M  S  R  R  M  F  R  L  G  F  G  F  V  G  M  L  C  S  V  W  C  M  W  C  L  C  G  W  N  I  G  G  G  V  C  K  E  E  L  M  *  R  E  M  M  V  R  V  V  K  R  G  T  G  F  W  V  L  V  I  S  Q   : V  L  L  N  D  V  N  I  *  I  Q  W  G  H  F  F  G  G  *  L  A  F  T  G  *  S  L  V  V  K  F  F  Y  R  M  L  H  I  Y  T   : G  W  Q  L  Y  F  W  H  S  M  Y  S  L  P  S  F  V  L  L  W  H  V  *  *  E  L  L  S  V  A  A  C  L  A  *  L  Q  Y  S  M  Q  W  V  R :   K  V  R  P  R  K  I  S  E  F  S  P  S  I  D  S  I  F  A  R  M  R  R  N  Q  G  *  V  L  V  G  W  Y  Q  L  R  Q  A  A  D  T  W  P  L  S  V  F  F  Y  L  K  M  Q :   N  V  A  Y  V  L  P  R  T  R  M  G  Q  N  S  M  L  S  P  V  I  I  I  F  T  P  P  A  S  *  N  G  L  K  *  T  L  H  V  H  Y  A  S  T  T  S  *  R  E  M  I  R  F  K  A  G  R  M  K  N  I  V  H  C  F  G  L  L  K  P  L  M  E  A  *  N  T  T  C  *  I  H  I  R  T  E  I  C  F  P  T  S  Q  A  S  S  H  V  R  L  A  Y  *  D  L  L  C  S  E  S  S  S  V  I  K  K  N  V  A  P  R  E  E  L  K  T  K  K  S  W  S  F  P  P  A  H  V  N  Y  L  W  F  H  L  F  P  I  G  I  Q  D  P  T  L  V  S  I  C  Y  F  L  V  C  G  L  C  P  V  L  L  C  S  F  L  *  E  N  R  K  V  G  D  N  L  I  S  K  F  Y  S  I  C   </second_frame>
            <third_frame>   H  P  H  P  H  S  D  T  K  F  I  K  S  F  S  K  S  S  K  T  S  A  K  S  T  L  I  D  E  V  I  Y  R  D  N  Q  D  S  V  F  V  E  Q  K  G  V  E  R  L  N  F  Y  P  Y  F  E  P  S  R  K  N  G  N  *  A  T  K  F  D  F  L  *  P  H  N  S  T  S  T  P  A  T  R  K  R  R  Q  R  G  S  S  V  I  T  C  G  T  S  W  S  G  H  R  K  A  R  W  R  R  R  W  R  V  V  V  G  E  G  D  G  G  A  *  A  G  *  A  K  S  *  L  G  L  F  E  A  G  G  G  V  G  Y  D  V  E  F  G  V  C  D  C  V  F  C  D  F  V  M  C  G  G  *  V  A  E  C  S  D  *  A  L  D  L  W  V  C  F  A  V  C  G  A  C  G  A  C  V  V  G  I  *  E  E  E  F  A  R  R  N  *  C  R  G  K  *  W  *  G  W  *  R  E  E  R  G  F  G  Y  W  *  S  V  K  :  F  C  *  T  M  *  I  Y  E  Y  N  G  V  T  S  L  V  D  N  W  L  L  L  D  S  L  W  W  *  N  S  F  T  E  C  S  T  F  I  L  :  V  G  S  C  I  S  G  I  R  C  I  L  C  H  L  L  C  C  F  G  M  S  D  R  S  C  S  L  L  L  L  A  L  H  N  C  S  T  L  C  S  G  S   : G  R  C  V  R  G  R  S  Q  S  S  P  Q  V  *  I  P  Y  L  Q  E  *  G  E  T  K  G  R  C  W  *  D  G  T  N  *  D  K  Q  R  I  P  G  H  *  A  Y  S  F  T  *  R  C   : R  M  L  H  M  S  Y  L  V  R  G  W  G  R  T  P  C  S  P  L  *  S  S  F  S  L  H  L  H  R  E  M  A  *  N  E  R  Y  M  S  T  M  Q  V  Q  H  P  E  G  K  *  S  G  L  K  Q  G  E  *  K  T  L  Y  I  V  S  G  Y  *  S  H  L  W  K  L  E  T  L  L  A  K  S  I  S  E  Q  K  S  A  F  Q  L  V  K  L  P  L  M  F  A  *  H  I  E  I  F  S  V  V  N  R  L  L  *  L  K  K  M  *  H  P  A  K  N  *  K  R  R  R  V  G  P  S  P  Q  L  M  *  I  I  F  G  S  I  C  F  Q  *  V  Y  R  I  Q  L  L  *  V  Y  A  I  F  L  C  V  V  Y  V  Q  F  Y  C  A  L  F  S  K  K  T  E  K  W  V  I  I  *  Y  L  S  F  T  Q  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23315" stop="23835"/>
                    <exon start="27254" stop="27373"/>
                    <exon start="28265" stop="28394"/>
                    <exon start="28475" stop="28633"/>
                    <exon start="28944" stop="29105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFIHILNLQEKMATEPPNLISSDPTTPLLHRRLENGGRGGRQSSLAVLLGRVTGRRGGGGGGASLLVRETAARELDERRADWGYSKPVVALDMMWNLGFVIVSFVILSCAVDESPNVPIRLWICGYALQCVVHVVLVWLEYRRRSLQGGTDVEGNDGEGGEERNGVLGIGNQSSFAKRCEYMNTMGSLLWWIIGFYWIVSGGEILLQNAPHLYWLAVVFLAFDVFFAIFCVALACLIGVALCCCLPCIIAVLYAVGQEGASEEDLRVLPKYRFHICKNEEKPRVGAGRMVPIETSSGYLATERILLPEDAECCICLTSYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNDQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29254" stop="29469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLLCSESSSVIKKNVAPREELKTKKSWSFPPAHVNYLWFHLFPIGIQDPTLVSICYFLVCGLCPVLLCSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23142" e_stop="23835"/>
            <exon e_start="23899" e_stop="23905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.766" e_score="0.934"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="23142" e_stop="23835" e_length="694"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.766">
            <gDNA_intron_boundary i_start="23836" i_stop="23898" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="23899" e_stop="23905" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23142" stop="23835"/>
              <exon start="23899" stop="23905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23165" stop="23835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23165" stop="23733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23233" stop="23457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACACAGCTCCCCACCCCCACCCCCCACCCCCACCCCCACAGTGACACCAAATTCATCAAAAGTTTCAGCAAAAGCTCAAAAACGTCAGCTAAATCAACGCTTATCGATGAGGTAATTTATAGAGATAATCAAGATTCAGTTTTTGTTGAGCAAAAAGGAGTTGAAAGATTGAATTTTTATCCATATTTTGAACCTTCAAGAAAAAATGGCAACTGAGCCACCAAATTTGATTTCCTCTGACCCCACAACTCCACTTCTACACCGGCGACTCGAAAACGGCGGCAGAGGGGGTCGTCAGTCATCACTTGCGGTACTTCTTGGTCGGGTCACCGGAAGGCGCGGTGGCGGAGGAGGTGGCGCGTCGTTGTTGGTGAGGGAGACGGCGGCGCGTGAGCTGGATGAGCGAAGAGCTGATTGGGGTTATTCGAAGCCGGTGGTGGCGTTGGATATGATGTGGAATTTGGGGTTTGTGATTGTGTCTTTTGTGATTTTGTCATGTGCGGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGAATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGGTAATCAGTCAAG : TGTTACT</gDNA_template>
            <first_frame> D  T  A  P  H  P  H  P  P  P  P  P  P  Q  *  H  Q  I  H  Q  K  F  Q  Q  K  L  K  N  V  S  *  I  N  A  Y  R  *  G  N  L  *  R  *  S  R  F  S  F  C  *  A  K  R  S  *  K  I  E  F  L  S  I  F  *  T  F  K  K  K  W  Q  L  S  H  Q  I  *  F  P  L  T  P  Q  L  H  F  Y  T  G  D  S  K  T  A  A  E  G  V  V  S  H  H  L  R  Y  F  L  V  G  S  P  E  G  A  V  A  E  E  V  A  R  R  C  W  *  G  R  R  R  R  V  S  W  M  S  E  E  L  I  G  V  I  R  S  R  W  W  R  W  I  *  C  G  I  W  G  L  *  L  C  L  L  *  F  C  H  V  R  W  M  S  R  R  M  F  R  L  G  F  G  F  V  G  M  L  C  S  V  W  C  M  W  C  L  C  G  W  N  I  G  G  G  V  C  K  E  E  L  M  *  R  E  M  M  V  R  V  V  K  R  G  T  G  F  W  V  L  V  I  S  Q   : V  L   </first_frame>
            <second_frame>  T  Q  L  P  T  P  T  P  H  P  H  P  H  S  D  T  K  F  I  K  S  F  S  K  S  S  K  T  S  A  K  S  T  L  I  D  E  V  I  Y  R  D  N  Q  D  S  V  F  V  E  Q  K  G  V  E  R  L  N  F  Y  P  Y  F  E  P  S  R  K  N  G  N  *  A  T  K  F  D  F  L  *  P  H  N  S  T  S  T  P  A  T  R  K  R  R  Q  R  G  S  S  V  I  T  C  G  T  S  W  S  G  H  R  K  A  R  W  R  R  R  W  R  V  V  V  G  E  G  D  G  G  A  *  A  G  *  A  K  S  *  L  G  L  F  E  A  G  G  G  V  G  Y  D  V  E  F  G  V  C  D  C  V  F  C  D  F  V  M  C  G  G  *  V  A  E  C  S  D  *  A  L  D  L  W  V  C  F  A  V  C  G  A  C  G  A  C  V  V  G  I  *  E  E  E  F  A  R  R  N  *  C  R  G  K  *  W  *  G  W  *  R  E  E  R  G  F  G  Y  W  *  S  V  K  :  C  Y  </second_frame>
            <third_frame>   H  S  S  P  P  P  P  P  T  P  T  P  T  V  T  P  N  S  S  K  V  S  A  K  A  Q  K  R  Q  L  N  Q  R  L  S  M  R  *  F  I  E  I  I  K  I  Q  F  L  L  S  K  K  E  L  K  D  *  I  F  I  H  I  L  N  L  Q  E  K  M  A  T  E  P  P  N  L  I  S  S  D  P  T  T  P  L  L  H  R  R  L  E  N  G  G  R  G  G  R  Q  S  S  L  A  V  L  L  G  R  V  T  G  R  R  G  G  G  G  G  G  A  S  L  L  V  R  E  T  A  A  R  E  L  D  E  R  R  A  D  W  G  Y  S  K  P  V  V  A  L  D  M  M  W  N  L  G  F  V  I  V  S  F  V  I  L  S  C  A  V  D  E  S  P  N  V  P  I  R  L  W  I  C  G  Y  A  L  Q  C  V  V  H  V  V  L  V  W  L  E  Y  R  R  R  S  L  Q  G  G  T  D  V  E  G  N  D  G  E  G  G  E  E  R  N  G  V  L  G  I  G  N  Q  S  S :   V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23315" stop="23835"/>
                    <exon start="23899" stop="23905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFIHILNLQEKMATEPPNLISSDPTTPLLHRRLENGGRGGRQSSLAVLLGRVTGRRGGGGGGASLLVRETAARELDERRADWGYSKPVVALDMMWNLGFVIVSFVILSCAVDESPNVPIRLWICGYALQCVVHVVLVWLEYRRRSLQGGTDVEGNDGEGGEERNGVLGIGNQSSVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29420" PGL_stop="28968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29420" e_stop="28968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="29420" e_stop="28968" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29420" stop="28968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCATATACTTACAAGAGTTGGATCCTGTATACCTATTGGAAACAAATGGAACCAAAGATAATTTACATGAGCTGGGGGGAAGGACCAACTCTTCTTCGTTTTTAATTCTTCGCGGGGTGCTACATTTTTTTTAATCACAGAAGACGATTCACTACAGAGAAGATCTCAATATGCTAAGCGAACATGAGAGGAAGCTTGACTAGTTGGAAAGCAGATTTCTGTTCTGATATGGATTTAGCAAGTAGTGTTTCAAGCTTCCATAAGTGGCTTTAATAACCCGAAACAATGTACAATGTTTTTCATTCTCCCTGCTTTAAACCTGATCATTTCCCTTCAGGATGTTGTACTTGCATAGTGGACATGTAGCGTTCATTTTAAGCCATTTCACGATGCAGGTGGAGTGAAAATGATGATTACAGGGGAGAGCATGGAGTTCTGCCCCATCCTCGTA</gDNA_template>
            <first_frame> *  H  I  L  T  R  V  G  S  C  I  P  I  G  N  K  W  N  Q  R  *  F  T  *  A  G  G  K  D  Q  L  F  F  V  F  N  S  S  R  G  A  T  F  F  L  I  T  E  D  D  S  L  Q  R  R  S  Q  Y  A  K  R  T  *  E  E  A  *  L  V  G  K  Q  I  S  V  L  I  W  I  *  Q  V  V  F  Q  A  S  I  S  G  F  N  N  P  K  Q  C  T  M  F  F  I  L  P  A  L  N  L  I  I  S  L  Q  D  V  V  L  A  *  W  T  C  S  V  H  F  K  P  F  H  D  A  G  G  V  K  M  M  I  T  G  E  S  M  E  F  C  P  I  L  V </first_frame>
            <second_frame>  S  I  Y  L  Q  E  L  D  P  V  Y  L  L  E  T  N  G  T  K  D  N  L  H  E  L  G  G  R  T  N  S  S  S  F  L  I  L  R  G  V  L  H  F  F  *  S  Q  K  T  I  H  Y  R  E  D  L  N  M  L  S  E  H  E  R  K  L  D  *  L  E  S  R  F  L  F  *  Y  G  F  S  K  *  C  F  K  L  P  *  V  A  L  I  T  R  N  N  V  Q  C  F  S  F  S  L  L  *  T  *  S  F  P  F  R  M  L  Y  L  H  S  G  H  V  A  F  I  L  S  H  F  T  M  Q  V  E  *  K  *  *  L  Q  G  R  A  W  S  S  A  P  S  S   </second_frame>
            <third_frame>   A  Y  T  Y  K  S  W  I  L  Y  T  Y  W  K  Q  M  E  P  K  I  I  Y  M  S  W  G  E  G  P  T  L  L  R  F  *  F  F  A  G  C  Y  I  F  F  N  H  R  R  R  F  T  T  E  K  I  S  I  C  *  A  N  M  R  G  S  L  T  S  W  K  A  D  F  C  S  D  M  D  L  A  S  S  V  S  S  F  H  K  W  L  *  *  P  E  T  M  Y  N  V  F  H  S  P  C  F  K  P  D  H  F  P  S  G  C  C  T  C  I  V  D  M  *  R  S  F  *  A  I  S  R  C  R  W  S  E  N  D  D  Y  R  G  E  H  G  V  L  P  H  P  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0078J04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31039" PGL_stop="44359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31039" e_stop="31439"/>
            <exon e_start="31600" e_stop="31713"/>
            <exon e_start="32028" e_stop="32093"/>
            <exon e_start="33282" e_stop="33371"/>
            <exon e_start="33451" e_stop="33570"/>
            <exon e_start="33949" e_stop="33977"/>
            <exon e_start="34067" e_stop="34209"/>
            <exon e_start="34309" e_stop="34403"/>
            <exon e_start="37506" e_stop="37592"/>
            <exon e_start="37750" e_stop="37857"/>
            <exon e_start="37991" e_stop="38082"/>
            <exon e_start="40401" e_stop="40482"/>
            <exon e_start="41723" e_stop="41788"/>
            <exon e_start="44025" e_stop="44140"/>
            <exon e_start="44254" e_stop="44359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="0.757" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.479" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.177" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.152" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.638" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.739" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="31039" e_stop="31439" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31440" i_stop="31599" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31600" e_stop="31713" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.757" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31714" i_stop="32027" i_length="314"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32028" e_stop="32093" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.479">
            <gDNA_intron_boundary i_start="32094" i_stop="33281" i_length="1188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33282" e_stop="33371" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33372" i_stop="33450" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33451" e_stop="33570" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33571" i_stop="33948" i_length="378"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33949" e_stop="33977" e_length="29"/>
          </exon>
          <intron i_serial="6" don_prob="0.177" acc_prob="0.967">
            <gDNA_intron_boundary i_start="33978" i_stop="34066" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34067" e_stop="34209" e_length="143"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="34210" i_stop="34308" i_length="99"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34309" e_stop="34403" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.152">
            <gDNA_intron_boundary i_start="34404" i_stop="37505" i_length="3102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="37506" e_stop="37592" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37593" i_stop="37749" i_length="157"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="37750" e_stop="37857" e_length="108"/>
          </exon>
          <intron i_serial="10" don_prob="0.638" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37858" i_stop="37990" i_length="133"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37991" e_stop="38082" e_length="92"/>
          </exon>
          <intron i_serial="11" don_prob="0.898" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38083" i_stop="40400" i_length="2318"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="40401" e_stop="40482" e_length="82"/>
          </exon>
          <intron i_serial="12" don_prob="0.946" acc_prob="0.982">
            <gDNA_intron_boundary i_start="40483" i_stop="41722" i_length="1240"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41723" e_stop="41788" e_length="66"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41789" i_stop="44024" i_length="2236"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="44025" e_stop="44140" e_length="116"/>
          </exon>
          <intron i_serial="14" don_prob="0.993" acc_prob="0.739">
            <gDNA_intron_boundary i_start="44141" i_stop="44253" i_length="113"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="44254" e_stop="44359" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31039" stop="31439"/>
              <exon start="31600" stop="31713"/>
              <exon start="32028" stop="32093"/>
              <exon start="33282" stop="33371"/>
              <exon start="33451" stop="33554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33306" stop="33371"/>
              <exon start="33451" stop="33570"/>
              <exon start="33949" stop="33977"/>
              <exon start="34067" stop="34209"/>
              <exon start="34309" stop="34403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33338" stop="33371"/>
              <exon start="33451" stop="33570"/>
              <exon start="33949" stop="33977"/>
              <exon start="34067" stop="34209"/>
              <exon start="34309" stop="34403"/>
              <exon start="37506" stop="37592"/>
              <exon start="37750" stop="37857"/>
              <exon start="37991" stop="38003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33338" stop="33371"/>
              <exon start="33451" stop="33570"/>
              <exon start="33949" stop="33977"/>
              <exon start="34067" stop="34180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281576" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34100" stop="34209"/>
              <exon start="34309" stop="34403"/>
              <exon start="37506" stop="37592"/>
              <exon start="37750" stop="37857"/>
              <exon start="37991" stop="38082"/>
              <exon start="40401" stop="40482"/>
              <exon start="41723" stop="41788"/>
              <exon start="44025" stop="44132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34166" stop="34209"/>
              <exon start="34309" stop="34403"/>
              <exon start="37506" stop="37592"/>
              <exon start="37750" stop="37857"/>
              <exon start="37991" stop="38082"/>
              <exon start="40401" stop="40482"/>
              <exon start="41723" stop="41788"/>
              <exon start="44025" stop="44109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34166" stop="34209"/>
              <exon start="34309" stop="34403"/>
              <exon start="37506" stop="37592"/>
              <exon start="37750" stop="37857"/>
              <exon start="37991" stop="38082"/>
              <exon start="40401" stop="40472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37763" stop="37857"/>
              <exon start="37991" stop="38082"/>
              <exon start="40401" stop="40482"/>
              <exon start="41723" stop="41788"/>
              <exon start="44025" stop="44140"/>
              <exon start="44254" stop="44359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAATAAATAATAATAAAATTACAATAAAATAAATAAATAAAAAAATTTCAATCTTCCCTCTCGAGTCAATTTTGGTTTTAGGCCAAAATTTTTCTTCAATTTTTTAGATCTGTTTTACTTCAAATTTTTCAGTGTTTACAGTCATATAGTTGTTTGAGTTTTTTCTTGTGTGTGTGTTTATGCACAAAAACGGTTTAGATTGATGTTTGTGTTGAAGCTTAGGGAAGATCAAATTTGATTACAAAATTGGGCGAAAAAGTGGGAATTTGTTTCATACAATTTAGGGTGTTTGAATTCTTGTTATGACTACTGCGGAAGCGTTATCTGTGATTCCAGCAGCTGTTCTTCGTAATTTATCGGATAAGCTGTACGAGAAGCGCAAGAATGCTGCTTTAGAG : TTGGAAGGGATTGTTAAGCATTTGACATCTGCGGGTGACCATGACAAGATCACTGCTGTTATCAGTTTGTTGTCTCAGGAGTATACTTACTCACCTCAGGCTCATAACCGGAAA : GGAGGATTGATAGGACTGGCTGCAGTAACTGTTGGTTTGACTTCAGATGCAGCACAACACCTTAAG : CAAATTGTCCCGCCAGTCTTACACTCTTTTTCGCACCAAGACAGCAGAGTTCGTTATTATGCCTGTGAAGCTTTGTATAACATCGCAAAG : GTTGTAAGAGGAGATTTCATCGTATTCTTCAATCAGATCTTTGATGCTTTGTGTAAGCTTGCGGCAGATTCAGATGCCAACGTGCAAAGTGCTGCTCATCTTTTAGATAGACTGGTGAAG : GATATCGTCACAGAGAGTGAGCAATTCAG : CATTGAAGAATTTATTCCTTTGCTAAGAGAACGAATGAATGTCCTCAATCCTCATGTCCGCCAATTTCTTGTTGGGTGGATCACAGTTTTAGACAGTGTTCCGGATATTGATATGCTCGGTTTTCTTCCTGATTTTCTTGATG : GATTATTTAATATGCTGAGTGATTCTAGCCATGAAATACGGCAACAGGCTGATTCTGCGCTTTCAGAGTTTTTGCAAGAGATTAAGAATTCTCCA : TCTGTAGATTATGGCCGCATGGCTGAAATACTAGTGCAAAGGGCAGGCTCACAGGATGAATTTACTAGGCTGACTTCTATCACTTGG : ATAAATGAATTTGTGAAACTTGGTGGAGATCAACTTGTCCCTTATTATGCTGATATTCTGGGAGCAATATTGCCTTGTATATCTGATAAAGAAGAGAAAATAAGAGTT : GTTTCTCGTGAAACAAATGACGAACTTCGTGCAATTGAGGCTGATCCAGCTGAGGGTTTTGATGTAGGAGCAATCCTCTCTGTTGCTAGGAG : GCAGTTGTCTAGTGAATGGGAGGCGACACGTATTGAATCATTACATTGGATGTGGACCCTGCTTAATGGACATCGGTCCGAG : GTCTTGGTTTTTCTGAATGATGTCTTTGACACTCTCCTAAGGGCGCTATCGGATCCCTCCGATGAG : GTAGTGCTCCTGGTTCTTGAGGTGCACGCATGCATAGCTGAAGATCCGCAACACTTCCGGCAGCTAGTTGTTTTCCTTGTTCACAGCTTTCAGCATGATCACTCACTCCTCGAGAA : ACGTGGGGCTTTGATAATTCGACGGCTATGTGTACTTCTAAATGCTGAAAGAGTTTACCGTGAACTGTCCACAATACTTGAAGGAGAATCAGATTTGGACTTTGCT</gDNA_template>
            <first_frame> A  K  *  I  I  I  K  L  Q  *  N  K  *  I  K  K  F  Q  S  S  L  S  S  Q  F  W  F  *  A  K  I  F  L  Q  F  F  R  S  V  L  L  Q  I  F  Q  C  L  Q  S  Y  S  C  L  S  F  F  L  C  V  C  L  C  T  K  T  V  *  I  D  V  C  V  E  A  *  G  R  S  N  L  I  T  K  L  G  E  K  V  G  I  C  F  I  Q  F  R  V  F  E  F  L  L  *  L  L  R  K  R  Y  L  *  F  Q  Q  L  F  F  V  I  Y  R  I  S  C  T  R  S  A  R  M  L  L  *  S :   W  K  G  L  L  S  I  *  H  L  R  V  T  M  T  R  S  L  L  L  S  V  C  C  L  R  S  I  L  T  H  L  R  L  I  T  G  K :   E  D  *  *  D  W  L  Q  *  L  L  V  *  L  Q  M  Q  H  N  T  L  S :   K  L  S  R  Q  S  Y  T  L  F  R  T  K  T  A  E  F  V  I  M  P  V  K  L  C  I  T  S  Q  R :   L  *  E  E  I  S  S  Y  S  S  I  R  S  L  M  L  C  V  S  L  R  Q  I  Q  M  P  T  C  K  V  L  L  I  F  *  I  D  W  *  R :   I  S  S  Q  R  V  S  N  S   : A  L  K  N  L  F  L  C  *  E  N  E  *  M  S  S  I  L  M  S  A  N  F  L  L  G  G  S  Q  F  *  T  V  F  R  I  L  I  C  S  V  F  F  L  I  F  L  M  :  D  Y  L  I  C  *  V  I  L  A  M  K  Y  G  N  R  L  I  L  R  F  Q  S  F  C  K  R  L  R  I  L  H :   L  *  I  M  A  A  W  L  K  Y  *  C  K  G  Q  A  H  R  M  N  L  L  G  *  L  L  S  L  G :   *  M  N  L  *  N  L  V  E  I  N  L  S  L  I  M  L  I  F  W  E  Q  Y  C  L  V  Y  L  I  K  K  R  K  *  E  L :   F  L  V  K  Q  M  T  N  F  V  Q  L  R  L  I  Q  L  R  V  L  M  *  E  Q  S  S  L  L  L  G   : G  S  C  L  V  N  G  R  R  H  V  L  N  H  Y  I  G  C  G  P  C  L  M  D  I  G  P  R :   S  W  F  F  *  M  M  S  L  T  L  S  *  G  R  Y  R  I  P  P  M  R :   *  C  S  W  F  L  R  C  T  H  A  *  L  K  I  R  N  T  S  G  S  *  L  F  S  L  F  T  A  F  S  M  I  T  H  S  S  R   : N  V  G  L  *  *  F  D  G  Y  V  Y  F  *  M  L  K  E  F  T  V  N  C  P  Q  Y  L  K  E  N  Q  I  W  T  L   </first_frame>
            <second_frame>  Q  N  K  *  *  *  N  Y  N  K  I  N  K  *  K  N  F  N  L  P  S  R  V  N  F  G  F  R  P  K  F  F  F  N  F  L  D  L  F  Y  F  K  F  F  S  V  Y  S  H  I  V  V  *  V  F  S  C  V  C  V  Y  A  Q  K  R  F  R  L  M  F  V  L  K  L  R  E  D  Q  I  *  L  Q  N  W  A  K  K  W  E  F  V  S  Y  N  L  G  C  L  N  S  C  Y  D  Y  C  G  S  V  I  C  D  S  S  S  C  S  S  *  F  I  G  *  A  V  R  E  A  Q  E  C  C  F  R   : V  G  R  D  C  *  A  F  D  I  C  G  *  P  *  Q  D  H  C  C  Y  Q  F  V  V  S  G  V  Y  L  L  T  S  G  S  *  P  E   : R  R  I  D  R  T  G  C  S  N  C  W  F  D  F  R  C  S  T  T  P  *   : A  N  C  P  A  S  L  T  L  F  F  A  P  R  Q  Q  S  S  L  L  C  L  *  S  F  V  *  H  R  K   : G  C  K  R  R  F  H  R  I  L  Q  S  D  L  *  C  F  V  *  A  C  G  R  F  R  C  Q  R  A  K  C  C  S  S  F  R  *  T  G  E   : G  Y  R  H  R  E  *  A  I  Q  :  H  *  R  I  Y  S  F  A  K  R  T  N  E  C  P  Q  S  S  C  P  P  I  S  C  W  V  D  H  S  F  R  Q  C  S  G  Y  *  Y  A  R  F  S  S  *  F  S  *  W :   I  I  *  Y  A  E  *  F  *  P  *  N  T  A  T  G  *  F  C  A  F  R  V  F  A  R  D  *  E  F  S   : I  C  R  L  W  P  H  G  *  N  T  S  A  K  G  R  L  T  G  *  I  Y  *  A  D  F  Y  H  L   : D  K  *  I  C  E  T  W  W  R  S  T  C  P  L  L  C  *  Y  S  G  S  N  I  A  L  Y  I  *  *  R  R  E  N  K  S   : C  F  S  *  N  K  *  R  T  S  C  N  *  G  *  S  S  *  G  F  *  C  R  S  N  P  L  C  C  *  E  :  A  V  V  *  *  M  G  G  D  T  Y  *  I  I  T  L  D  V  D  P  A  *  W  T  S  V  R   : G  L  G  F  S  E  *  C  L  *  H  S  P  K  G  A  I  G  S  L  R  *   : G  S  A  P  G  S  *  G  A  R  M  H  S  *  R  S  A  T  L  P  A  A  S  C  F  P  C  S  Q  L  S  A  *  S  L  T  P  R  E  :  T  W  G  F  D  N  S  T  A  M  C  T  S  K  C  *  K  S  L  P  *  T  V  H  N  T  *  R  R  I  R  F  G  L  C  </second_frame>
            <third_frame>   K  I  N  N  N  K  I  T  I  K  *  I  N  K  K  I  S  I  F  P  L  E  S  I  L  V  L  G  Q  N  F  S  S  I  F  *  I  C  F  T  S  N  F  S  V  F  T  V  I  *  L  F  E  F  F  L  V  C  V  F  M  H  K  N  G  L  D  *  C  L  C  *  S  L  G  K  I  K  F  D  Y  K  I  G  R  K  S  G  N  L  F  H  T  I  *  G  V  *  I  L  V  M  T  T  A  E  A  L  S  V  I  P  A  A  V  L  R  N  L  S  D  K  L  Y  E  K  R  K  N  A  A  L  E  :  L  E  G  I  V  K  H  L  T  S  A  G  D  H  D  K  I  T  A  V  I  S  L  L  S  Q  E  Y  T  Y  S  P  Q  A  H  N  R  K  :  G  G  L  I  G  L  A  A  V  T  V  G  L  T  S  D  A  A  Q  H  L  K  :  Q  I  V  P  P  V  L  H  S  F  S  H  Q  D  S  R  V  R  Y  Y  A  C  E  A  L  Y  N  I  A  K  :  V  V  R  G  D  F  I  V  F  F  N  Q  I  F  D  A  L  C  K  L  A  A  D  S  D  A  N  V  Q  S  A  A  H  L  L  D  R  L  V  K  :  D  I  V  T  E  S  E  Q  F  S :   I  E  E  F  I  P  L  L  R  E  R  M  N  V  L  N  P  H  V  R  Q  F  L  V  G  W  I  T  V  L  D  S  V  P  D  I  D  M  L  G  F  L  P  D  F  L  D   : G  L  F  N  M  L  S  D  S  S  H  E  I  R  Q  Q  A  D  S  A  L  S  E  F  L  Q  E  I  K  N  S  P  :  S  V  D  Y  G  R  M  A  E  I  L  V  Q  R  A  G  S  Q  D  E  F  T  R  L  T  S  I  T  W  :  I  N  E  F  V  K  L  G  G  D  Q  L  V  P  Y  Y  A  D  I  L  G  A  I  L  P  C  I  S  D  K  E  E  K  I  R  V  :  V  S  R  E  T  N  D  E  L  R  A  I  E  A  D  P  A  E  G  F  D  V  G  A  I  L  S  V  A  R  R :   Q  L  S  S  E  W  E  A  T  R  I  E  S  L  H  W  M  W  T  L  L  N  G  H  R  S  E  :  V  L  V  F  L  N  D  V  F  D  T  L  L  R  A  L  S  D  P  S  D  E  :  V  V  L  L  V  L  E  V  H  A  C  I  A  E  D  P  Q  H  F  R  Q  L  V  V  F  L  V  H  S  F  Q  H  D  H  S  L  L  E  K :   R  G  A  L  I  I  R  R  L  C  V  L  L  N  A  E  R  V  Y  R  E  L  S  T  I  L  E  G  E  S  D  L  D  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31335" stop="31439"/>
                    <exon start="31600" stop="31713"/>
                    <exon start="32028" stop="32093"/>
                    <exon start="33282" stop="33371"/>
                    <exon start="33451" stop="33570"/>
                    <exon start="33949" stop="33977"/>
                    <exon start="34067" stop="34209"/>
                    <exon start="34309" stop="34403"/>
                    <exon start="37506" stop="37592"/>
                    <exon start="37750" stop="37857"/>
                    <exon start="37991" stop="38082"/>
                    <exon start="40401" stop="40482"/>
                    <exon start="41723" stop="41788"/>
                    <exon start="44025" stop="44140"/>
                    <exon start="44254" stop="44359"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1419</number_coding_nucleotides>
                  <number_encoded_amino_acids>473</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVMTTAEALSVIPAAVLRNLSDKLYEKRKNAALELEGIVKHLTSAGDHDKITAVISLLSQEYTYSPQAHNRKGGLIGLAAVTVGLTSDAAQHLKQIVPPVLHSFSHQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLAADSDANVQSAAHLLDRLVKDIVTESEQFSIEEFIPLLRERMNVLNPHVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAGSQDEFTRLTSITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVSRETNDELRAIEADPAEGFDVGAILSVARRQLSSEWEATRIESLHWMWTLLNGHRSEVLVFLNDVFDTLLRALSDPSDEVVLLVLEVHACIAEDPQHFRQLVVFLVHSFQHDHSLLEKRGALIIRRLCVLLNAERVYRELSTILEGESDLDFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44721" PGL_stop="48066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44721" e_stop="44756"/>
            <exon e_start="44875" e_stop="45003"/>
            <exon e_start="46133" e_stop="46201"/>
            <exon e_start="46803" e_stop="47087"/>
            <exon e_start="47710" e_stop="48066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="0.889"/>
          <exon-intron don_prob="0.984" acc_prob="0.151" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.823" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="44721" e_stop="44756" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="44757" i_stop="44874" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="44875" e_stop="45003" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.151">
            <gDNA_intron_boundary i_start="45004" i_stop="46132" i_length="1129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46133" e_stop="46201" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.902">
            <gDNA_intron_boundary i_start="46202" i_stop="46802" i_length="601"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46803" e_stop="47087" e_length="285"/>
          </exon>
          <intron i_serial="4" don_prob="0.930" acc_prob="0.823">
            <gDNA_intron_boundary i_start="47088" i_stop="47709" i_length="622"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="47710" e_stop="48066" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44721" stop="44756"/>
              <exon start="44875" stop="45003"/>
              <exon start="46133" stop="46201"/>
              <exon start="46803" stop="47087"/>
              <exon start="47710" stop="47941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44897" stop="45003"/>
              <exon start="46133" stop="46201"/>
              <exon start="46803" stop="47087"/>
              <exon start="47710" stop="48019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691944" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46168" stop="46201"/>
              <exon start="46803" stop="47087"/>
              <exon start="47710" stop="48045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46939" stop="47087"/>
              <exon start="47710" stop="48043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281365" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46949" stop="47087"/>
              <exon start="47710" stop="48066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273313" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATGGCAATGATAAGCCTCTGCCTGTTAGCTCAG : TCATACCAGCATGCAAGTTCTGTTATTCAGTCTTTGGTTGAAGAAGATATCAATGTGAAGTTCTTAGTGCAACTACATAAGTTGATCCACCTTCTGGAGACTCCAACCTTTGCTTACCTTAGGCTTCAG : CTTCTTGAACCTGGAAGATACATATGGTTATTAAAAGCATTATATGGTCTGCTGATGCTGTTGCCGCAG : CAAAGTGCAGCCTTCAAGATTCTTCGTACTCGGTTGAAAACTGTTCCTTCATACTCTTTCAAGGAAGAGAAAGTTGCACGAACATCGTCTGGGATTCCATTTTTCAACGGCGGAGGTGGATTACAAATCTCTGAGGATGGCAACCCAAGTGAGAGTTCACATGATATGCATAACGGAATAAACTTTAGTTCTAGGCTGAAGCATTTTAAGCAAATTCAGCAGCAGCATCGTTTGCACCTAAAATCAGAGACTCAATCACGATTTAGTTCTGCTTCATCAATGAAG : GAGTTATGAAGACCAGAGGAATCAAACAATCTGTCGCAGCAACAGACTTGAACGGACCACCTTCTTCAAGCGTATGGCGTAGAGCCCCAGTACAGTTGCAACTTTGATTGTTTACTTTTGCTCCTAATCAAGGTTTCTTATACAGCAACCTTGATTTGCTTTCTTATTCTTTTTTTGGAAAGCATAGTCAAGCTCCGCTAAGTTGTATATTGTATATCTAGTTATTTGTTTTGTCAAAATTCATTGAGTTGGAAAAAGTGGAGAAAGGGATATTACTTTTAGCTTGGATATTCCAAAGCTATTTTAAAAAGTTTTTGAAAGATATTAGAAGGTAAAATTAGCCCATGTGGTTATGTT</gDNA_template>
            <first_frame> P  M  A  M  I  S  L  C  L  L  A  Q  :  S  Y  Q  H  A  S  S  V  I  Q  S  L  V  E  E  D  I  N  V  K  F  L  V  Q  L  H  K  L  I  H  L  L  E  T  P  T  F  A  Y  L  R  L  Q  :  L  L  E  P  G  R  Y  I  W  L  L  K  A  L  Y  G  L  L  M  L  L  P  Q  :  Q  S  A  A  F  K  I  L  R  T  R  L  K  T  V  P  S  Y  S  F  K  E  E  K  V  A  R  T  S  S  G  I  P  F  F  N  G  G  G  G  L  Q  I  S  E  D  G  N  P  S  E  S  S  H  D  M  H  N  G  I  N  F  S  S  R  L  K  H  F  K  Q  I  Q  Q  Q  H  R  L  H  L  K  S  E  T  Q  S  R  F  S  S  A  S  S  M  K  :  E  L  *  R  P  E  E  S  N  N  L  S  Q  Q  Q  T  *  T  D  H  L  L  Q  A  Y  G  V  E  P  Q  Y  S  C  N  F  D  C  L  L  L  L  L  I  K  V  S  Y  T  A  T  L  I  C  F  L  I  L  F  L  E  S  I  V  K  L  R  *  V  V  Y  C  I  S  S  Y  L  F  C  Q  N  S  L  S  W  K  K  W  R  K  G  Y  Y  F  *  L  G  Y  S  K  A  I  L  K  S  F  *  K  I  L  E  G  K  I  S  P  C  G  Y  V </first_frame>
            <second_frame>  Q  W  Q  *  *  A  S  A  C  *  L  S :   H  T  S  M  Q  V  L  L  F  S  L  W  L  K  K  I  S  M  *  S  S  *  C  N  Y  I  S  *  S  T  F  W  R  L  Q  P  L  L  T  L  G  F  S :   F  L  N  L  E  D  T  Y  G  Y  *  K  H  Y  M  V  C  *  C  C  C  R  S :   K  V  Q  P  S  R  F  F  V  L  G  *  K  L  F  L  H  T  L  S  R  K  R  K  L  H  E  H  R  L  G  F  H  F  S  T  A  E  V  D  Y  K  S  L  R  M  A  T  Q  V  R  V  H  M  I  C  I  T  E  *  T  L  V  L  G  *  S  I  L  S  K  F  S  S  S  I  V  C  T  *  N  Q  R  L  N  H  D  L  V  L  L  H  Q  *  R :   S  Y  E  D  Q  R  N  Q  T  I  C  R  S  N  R  L  E  R  T  T  F  F  K  R  M  A  *  S  P  S  T  V  A  T  L  I  V  Y  F  C  S  *  S  R  F  L  I  Q  Q  P  *  F  A  F  L  F  F  F  W  K  A  *  S  S  S  A  K  L  Y  I  V  Y  L  V  I  C  F  V  K  I  H  *  V  G  K  S  G  E  R  D  I  T  F  S  L  D  I  P  K  L  F  *  K  V  F  E  R  Y  *  K  V  K  L  A  H  V  V  M   </second_frame>
            <third_frame>   N  G  N  D  K  P  L  P  V  S  S   : V  I  P  A  C  K  F  C  Y  S  V  F  G  *  R  R  Y  Q  C  E  V  L  S  A  T  T  *  V  D  P  P  S  G  D  S  N  L  C  L  P  *  A  S   : A  S  *  T  W  K  I  H  M  V  I  K  S  I  I  W  S  A  D  A  V  A  A   : A  K  C  S  L  Q  D  S  S  Y  S  V  E  N  C  S  F  I  L  F  Q  G  R  E  S  C  T  N  I  V  W  D  S  I  F  Q  R  R  R  W  I  T  N  L  *  G  W  Q  P  K  *  E  F  T  *  Y  A  *  R  N  K  L  *  F  *  A  E  A  F  *  A  N  S  A  A  A  S  F  A  P  K  I  R  D  S  I  T  I  *  F  C  F  I  N  E   : G  V  M  K  T  R  G  I  K  Q  S  V  A  A  T  D  L  N  G  P  P  S  S  S  V  W  R  R  A  P  V  Q  L  Q  L  *  L  F  T  F  A  P  N  Q  G  F  L  Y  S  N  L  D  L  L  S  Y  S  F  F  G  K  H  S  Q  A  P  L  S  C  I  L  Y  I  *  L  F  V  L  S  K  F  I  E  L  E  K  V  E  K  G  I  L  L  L  A  W  I  F  Q  S  Y  F  K  K  F  L  K  D  I  R  R  *  N  *  P  M  W  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078J04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44721" stop="44756"/>
                    <exon start="44875" stop="45003"/>
                    <exon start="46133" stop="46201"/>
                    <exon start="46803" stop="47087"/>
                    <exon start="47710" stop="47718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMAMISLCLLAQSYQHASSVIQSLVEEDINVKFLVQLHKLIHLLETPTFAYLRLQLLEPGRYIWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSYSFKEEKVARTSSGIPFFNGGGGLQISEDGNPSESSHDMHNGINFSSRLKHFKQIQQQHRLHLKSETQSRFSSASSMKEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 60 chains have been computed
$ 
$ memory statistics:
$ 73512 bytes spliced alignments in total
$ 35 spliced alignments have been stored
$ 2100 bytes was the average size of a spliced alignment
$ 12576 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2096 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 72 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:20:26
-->
