<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:38:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271189" ref_strand="+" ref_description="SGN-E271189 [cLEM-5-I17]">
      <seq>gaactaggaactgagaggttgagtggtggaatttttgcattcgattccccatacatggccatgccgcagcagagcgtgcaaggatatggaaatggaatagatgtgattggaggtggaagagggaagaggaaagccattttggaacctttagataaggcggctctgcagaggcaacgtaggatgattaaaaacagagaatcagctgcccggtctagagaacggaaacaggcttatcaagtggaacttgagtcaatagcagttagattagaggaggagaatgaacagctgttgaaagagaaggaagagcgaaccagagcacattataaacagataatagagaaggtaattccagttgtggagaagcgaaaaccgcctcgtgtcctgcgaagagtgtgctccatgcagtggtaatatatcgttttgccacaggcatagtttaaaattaatgccttctgatatagatacagaataaaggagcctagccatgctggggttaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13214" stop="6283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12914" g_stop="12687" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12686" i_stop="12582" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12581" g_stop="12510" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="300" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12509" i_stop="9918" i_length="2592">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9917" g_stop="9888" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="330" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9887" i_stop="6754" i_length="3134">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6753" g_stop="6583" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="501" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E271189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12914" e_stop="12687"/>
          <exon e_start="12581" e_stop="12510"/>
          <exon e_start="9917" e_stop="9888"/>
          <exon e_start="6753" e_stop="6583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAGGTAAAAAGTATTCTTTGCTGATAGTAGTGATCACTATTAGCCTTTCAATCTATTTTAGCTTTTTGATTGTGTGAACTGAATTTAGATTTTTGTTTATGGGCATAGGCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAGGTAATGTATTTTAATACTTTCCGGCAGTTAGACCTGTGTTTTAAATTAAGATTGACAATTGAATTATTTGAATAAAAGGTATATGACAAAATAGCTGTTTGCATTGCTTGTACTGAGACTTTGAATTGATTCAGAGAATGAAGGTTCAATGCTAATTCAATTGGTTAAGTATATCATATATCAGCTTCTTAGCATAGCGAATAAGAGATTGTCTTTTGTCTACTGCCACATCTCTTACCATTTTAAAGACAACACACCAATAATCTAATTTTGCAGCTGCAAGTTTCGATTTTTTCTATAATTTTTCAAATTTGTATGTGTTGTTTCGATAGGCTCGCTGAAGAACTTTGTTTTAGAACTAATAAAAGTGCACTAACAAAGAAATATGTGAACAAGGAGAATGATTGAGGAGGGGAAAGTCTTCCTTATGTGAACTTGATGAAAATTAATCTTCGTGACTTTTGGTAAATAAAGATGAGCACTTTATTATAAACACATCGTAAGTAAAAAGGAAAATTGAGAGTGGGGTTCTCCAGTAGTGCTGCAGGTGCACTACACACTGTTATTCCACTTTCTATTCACATATGTAAGTTATGGCAATATTAATATACAATTTTTGATGCTGGAAACCAATATATGCTGTGTAAGGTTTACCATAAATTAAACCTTGTATTAGACTATACTTGTTTGGATGGTTGTTAAGTATTGTTTCATCATGTATCATATTGTATTTTACTATATTGTTTTAATGAATACAACATTTGGATAGATTTTGTATTGTTTTCCATCATTACATAATGTCACACATCAACATTAACCTACTAGAAAAGCAGGGGATACAGTAGAGCTACTATAGTAAGGTATGGTTAAAGGATAAAATAGGTTTTATCAAATAATAAGTAAAGACAAAATGAGAGAAAAAACAGTAGTGACATGCTCACATCAAATCTGACGTTTCACAAAAGAAGACTTTTCATGGTTACCTAATTGATGGATTTAATGATACGATAAAATTTAACTCAAGTAACAAACAAAACAAACATTGTATTTAAACTAAGAAACATGTAACAACCATTTTAAAACAAGCTGTGAGATATTCAGAGATTACCTTAGTGATGCAAACTTTTATCTTGCAAATGGAACATTGCACTATAAATCATAAGTAATTTTCTACGAGCTTTATTTTTCCTTTTGCATCCCATTAAAAATCCCTTACTTGATTATGAGCGACTCCAAAGACACAGGAAAGGACCCGTATATGCAAGTGGAATATTAGTATGACTGTAAAAATACCTTGGAAATATCTTGAAGTGGAAGTTCGATGATTATTTTTTATTCTTCTTTGACTGTCTAAAAACTATTTACTTACTATTTTTGGGATAGCTAGCCTTCCATAAAATGGCATGAGTATCAAATAGTAAATCCTATTCTGTTGTTAGTTGGATAGTAGCTGAAAGCATATAATTTTGTACTGTTTGTTTTCATATTGTAAGCTGTCCCATGAAAATCAAAGTTGCTTTGTTTGGATTTTTTTCTCTCTAAAATCATTTTTTGACTAGATAGAAGTAATTGGTGATTTCCTTGTAAACATGGGTGGGTTTACCTTAGGTCAAGGCATCAAGTAGTTTCACGTGACACCACTTTGTCGGAATTTTTTTTACTAAATATCTATATATAATTAAAAGCCAAGACAAAAATAGAGGATTAATTGAGTAAAATGACACTTTTTGACACAAAGAGCCACACAACTCATTTGGTCAGTGCGTTTTCAACATAGGTTCAGGAGTTTTAATCTCGGTGTTCTCGTTTAGTGTTTAAAGTTTTTGCTCTTTAATCTACAAAGTGATACACGTCCAGGTTCGAACCTTCGACCTCTTAGTAGTTAACAAAACGTTGAACCAATTACTCCAGTGTCACATCAGTAGACTTTACCGTATATGACGTATTGAGAAGGATGTTGCTTCTTCCCTGATTAGTTGAGGTGCTGCATGTTTTCTCTTTTCTTCTTTCGTTTCATCTTGCTCGCCAATGATATGATTTGTAGAATTCAATGAATTATTTTGGGATCATTTGATGCCCTATATAAAAGTGTTCAGTAATATTTTTGATGAGGTTATTTTAATTTTTAATACTGTTAAAAAAATGAAAACTCATCAAGAAGAGTTGGTAGTAATATATGAGTTGTCTTTTATTTATAATTTTGTTCCTTTTTAATATGATGTTACATTATTTTATTTACTTCTCATTTTAAAATGTGACACTGTTTACGAAAAATCTTGCGAATGCCATTGCTTATAAAGGGTAATTGTTTACTGATGCATTAAGTAACCGTTGCTTCTTCATGGTCCTTCACTAGGCATTTTGATTAGTAGTAAAGGGGGTTCTTGGTGGGGTGGGCATGTGCTTGGTGATGAGGTGGGAACTTAGCTTCGCTAGAAAAGGTTTACTGTAGCATTTGATAATCAAGTTAAGCAATGCTGTAACATTTTGTAAGCACCTAAATAATTCCAATATGTGTTCGTCTGCATTTCTATATGTAATTGTTTTGTTGATTTAATTCTTTGAGTAACACAAGTACTTTGTAATTTTCAGGAAGAGCGAACCAGAGCACATTATAAACAGGTAACTTCTTTTGCTATTTTATTCCCTATATGTTGTGTCTGAGTGGTTCATTTTTTCCTCATGTCAAGCACTTTAATTAGAGAGTTTTTGCAAAGATTTACCCGAACGATCCCTTTGTTTCTAGCTATATATCACGTAATTCACATTTATGCCAGCAAAAATATCTGAATGGTTGAAGAACCGCTAGGTTGATACTTGAAATAATGAGGTAGTCAAGCGTTCAATTCTTCAGTTATTTATCAGTGCATACAGTATACTGAACCAATGTTCATTTGTTTCCAATTTTGTTCTTCAGTATGGGCCTGATTAATGCGCTATTAATGCATAACTAGCTGGTTCTGGCAAGTTACACTGAAAGGTGCGACTCATCCAAAAGCTGCAATAAATTAACTGTAGCTAAAGATTAGGTCCCTCCTACCAATTCATCAATTTATGCATCATTTTATTAATATGTACTACAATTTTTTTTAATATTACAAAATAGTGGTGGCAAATGAGCGGGATTAGATCAGATTTGGGCAGATTGAGCTATAAAATGGTTTGGATAGCAATTCACCCATATTAATATGGGTTAAAAGTGGATTGCGTAAAATGGCTCTTAGTGCTAACCCACTTTAATCTCCTAAAGCCAAAATTCTTAAAATCTTTGTTTCTTTTTTTGTAGTTACTACTTGACACCGGTGATATTTCTTTTTGTAATTATTCTTTTTACTTTGTCTTTCTTAATGTTACATTATTCCAGTTTGAGCCAAGATGGATTAGATTGCAATCCTCCCATATTAATATGGTGGATTGGGTAAAATGGTTCAAACCCACTATAATCTCCTAAAGCCAAAATACTGTAAATTTATAGATACCCATATTATTTTCATGATTTAAAAGTAGATTGAAATCCATATTTACCCATTTGAAATATAAATGATCCATCTCATTATAATTAGTTTAATGGACTGATTTTATAAATATGAGCTGAAATTGTCGGTTCTTATAATCTTCTCATACTATAAACTAAACAAACTACTCACTGTACCCCATGTGTTCTCTAATCTTCTCATATACAAAGGATATAAAAATTGCACAATGAATCAGCTTTTGATAAACGGATGTGGACTTCCCCTTATTTTTTTCATTATATGGAGAGGTCAAGAAGGCTTAGTTCTCATTTCCTTTAGTGTAATATCTATTTGATGTTTTGGAATTGCTTTCATCTTCCAATACCTGAATGTCGTATGAACTATTAAAATCTCTATATTCATCTAATCAATCAAGTTAATTATCTTAATGAATACCAACATTTCATCCCTTCTCTCAAATAGTGGGGAGTCGTAATTTTAGTAGTTATTTGCTAGAAATAAAATTGTGCTCTTTATGATGTGGTGATCAAGCAGCAAGAAGATGTACTCTTGCTATGCAGATCACTTTTGAACTAATCTGAAATCATATATTACTTTCTTATTAAATGATCAATTTTTCTCAAGACAATTTGTTGGACGGTCCAACTTGGACCTGTCAATTAAGATGCTATATTTATTATGTTTACTTTGTATGTGGAATACCATTAGATCCTATTTAATGCTTCGACAATTAAAAGTTTGGTGGTACCATATAACTGAGAACCGAATACCGAAGTTTAGAAAAAAAATAGATCTGAAACTGAATCATAGAACCAAATTAGTTCGGTTCTGTTTTGGTTTTTCGATATTTAAAAAACTTATGTCCACCCCTGGTCATTCATCTTGCATTACCGTACAACAATATCCTATGCGGTAAAAGGACGTCAAATATGTTTTTAAGTGATAATATAGCTCTAATCATATAAGAGAATGAAAAAAAGAAGTTAGAATATAGGAATGATAAATAATGAATGCCAGTTCAAAATTCTCAGTAACAAGCAGGTAAACACGCCTAAAAGAGAATAGGAAACAGAAAGAGGTCATCGACAGATTTCTCAATTATAATGGTACTGTTTCAACTTGTACATCCATTCACATCAAGATCTCCTTAATGCTCATACATTCCAATCCAACTGGATCTGGTATAACTTTGATATACTGACTAGCCATTATAAGATTATGATTATCCAAGAACCCAAGTGTGTGATCCACCTTCTCTTCCTGCTTGCTCATTCAACCTTTTAACTGAAAAATTATCTGTTGACATTGGTGTCATTTGCTTTTCTGAAAGATCATTTGAAGTGTCAGGAAATGCGCTTTAAGGCCTAATGATGTTCAGATAAATTGTTTTCCGAAGAATCCTATAATATTACATATTTCTGAAATTCACAAGCTCCGTTTGAATTGGTTTACATCTTAACAAAATATGTAGGTATTTTTCTAAAAGAGAGAAGTAACAATTTCTTTAGGAAAACATGTTCATTGAGTTGTGATGATAGACTCTTTCCACTTTTTAGGTGTGCAATATAGTTACGGTCTGCCTTTCTTTCTCCTAGTATTGAAGGCCCGGTAGTAAAAAGAAGTTATAATCATGTCATTCGCAGAATTGCATCTTCTATTCGGCTTGAGGAAATACATATAGCAACGAGCCATAATTTCTTTCCTTTTCATTTTTTGTAATTAGAAGTCTAAATTCCGATGTTTGCTAATAACAAACAACAAAAAATGGTCATGCTAGATGTGTGACGAACATCAAAAAGAGCGATAGTTCCATAGTGGAAGCGTATCTTGGTTTTCTTCTAGTTTTCATGCATAAAGCAGTTCTACTTTGTGCTATGGTCCTATATTTCACCCCTAGTTATTTATTGTATTGTGATGGGTAAAAGCAACTGCATGGAATTATATAGCAATTGTTACCTGTATTATGGTGGTTGTTTTTCCTTATTAATAGATCCATTGCGTAATTTGTCAGTTGTGACTGTAAGGTAAAGTTAAGTTAATATTGTGTGACACTGCTTCCCTGTTTGAGTATGCATGAGAATCTATGGCTTGCTTAAGCAGCTAATTTTTGACATTGTCATTAAGCTTATTAGTGCTTCGAAAAATAACATTAGCAATATACTTGTATAAAAAAATATACATTAGCAACATGGCCTACAAAGTGAAATTCTCCTCTGCTTTGGTAGACTAGCAGTGTAATGGTAGTACATTTAACATTTCTTGATGTTGTTTTTCCTTCAGATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATATCGTTTTGCCACAGGCATAGTTTAAAATTAATGCCTTCTGATATAGATACAGAATAAAGGAGCCTAGCCATGCTGGGGTTAAGTGA</genome_strand>
        <mrna_strand>GAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAG.........................................................................................................GCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCGAACCAGAGCACATTATAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATATCGTTTTGCCACAGGCATAGTTTAAAATTAATGCCTTCTGATATAGATACAGAATAAAGGAGCCTAGCCATGCTGGGGTTAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304091" ref_strand="+" ref_description="SGN-E304091 [cLEX-6-L1]">
      <seq>agcagagaagggccgcagttgcgggatgtaaggaggaggcagtggatgaaatcatgacgttggaggattttttggtgaaagctggagcagttgaggaggaggcactggctggggaggggccagtgcaaggtgaggtgaaggttgaactaggaactgagaggttgagtggtggaatttttgcattcgattccccatacatggccatgccgcagcagagcgtgcaaggatatggaaatggaatagatgtgattggaggtggaagagggaagaggaaagccattttggaacctttagataaggcggctctgcagaggcaacgtaggatgattaaaaacagagaatcagctgcccggtctagagaacggaaacaggcttatcaagtggaacttgagtcaatagcagttagattagaggaggagaatgaacagctgttgaaagagaaggaagagcgaaccagagcacattataaacagataatagagaaggtaattccagttgtggagaagcgaaaaccgcctcgtgtcctgcgaagagtgtgctccatgcagtggtaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13357" stop="6369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13057" g_stop="12687" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12686" i_stop="12582" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12581" g_stop="12510" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="443" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12509" i_stop="9918" i_length="2592">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9917" g_stop="9888" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="473" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9887" i_stop="6754" i_length="3134">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6753" g_stop="6669" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="558" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E304091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13057" e_stop="12687"/>
          <exon e_start="12581" e_stop="12510"/>
          <exon e_start="9917" e_stop="9888"/>
          <exon e_start="6753" e_stop="6669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAGGTAAAAAGTATTCTTTGCTGATAGTAGTGATCACTATTAGCCTTTCAATCTATTTTAGCTTTTTGATTGTGTGAACTGAATTTAGATTTTTGTTTATGGGCATAGGCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAGGTAATGTATTTTAATACTTTCCGGCAGTTAGACCTGTGTTTTAAATTAAGATTGACAATTGAATTATTTGAATAAAAGGTATATGACAAAATAGCTGTTTGCATTGCTTGTACTGAGACTTTGAATTGATTCAGAGAATGAAGGTTCAATGCTAATTCAATTGGTTAAGTATATCATATATCAGCTTCTTAGCATAGCGAATAAGAGATTGTCTTTTGTCTACTGCCACATCTCTTACCATTTTAAAGACAACACACCAATAATCTAATTTTGCAGCTGCAAGTTTCGATTTTTTCTATAATTTTTCAAATTTGTATGTGTTGTTTCGATAGGCTCGCTGAAGAACTTTGTTTTAGAACTAATAAAAGTGCACTAACAAAGAAATATGTGAACAAGGAGAATGATTGAGGAGGGGAAAGTCTTCCTTATGTGAACTTGATGAAAATTAATCTTCGTGACTTTTGGTAAATAAAGATGAGCACTTTATTATAAACACATCGTAAGTAAAAAGGAAAATTGAGAGTGGGGTTCTCCAGTAGTGCTGCAGGTGCACTACACACTGTTATTCCACTTTCTATTCACATATGTAAGTTATGGCAATATTAATATACAATTTTTGATGCTGGAAACCAATATATGCTGTGTAAGGTTTACCATAAATTAAACCTTGTATTAGACTATACTTGTTTGGATGGTTGTTAAGTATTGTTTCATCATGTATCATATTGTATTTTACTATATTGTTTTAATGAATACAACATTTGGATAGATTTTGTATTGTTTTCCATCATTACATAATGTCACACATCAACATTAACCTACTAGAAAAGCAGGGGATACAGTAGAGCTACTATAGTAAGGTATGGTTAAAGGATAAAATAGGTTTTATCAAATAATAAGTAAAGACAAAATGAGAGAAAAAACAGTAGTGACATGCTCACATCAAATCTGACGTTTCACAAAAGAAGACTTTTCATGGTTACCTAATTGATGGATTTAATGATACGATAAAATTTAACTCAAGTAACAAACAAAACAAACATTGTATTTAAACTAAGAAACATGTAACAACCATTTTAAAACAAGCTGTGAGATATTCAGAGATTACCTTAGTGATGCAAACTTTTATCTTGCAAATGGAACATTGCACTATAAATCATAAGTAATTTTCTACGAGCTTTATTTTTCCTTTTGCATCCCATTAAAAATCCCTTACTTGATTATGAGCGACTCCAAAGACACAGGAAAGGACCCGTATATGCAAGTGGAATATTAGTATGACTGTAAAAATACCTTGGAAATATCTTGAAGTGGAAGTTCGATGATTATTTTTTATTCTTCTTTGACTGTCTAAAAACTATTTACTTACTATTTTTGGGATAGCTAGCCTTCCATAAAATGGCATGAGTATCAAATAGTAAATCCTATTCTGTTGTTAGTTGGATAGTAGCTGAAAGCATATAATTTTGTACTGTTTGTTTTCATATTGTAAGCTGTCCCATGAAAATCAAAGTTGCTTTGTTTGGATTTTTTTCTCTCTAAAATCATTTTTTGACTAGATAGAAGTAATTGGTGATTTCCTTGTAAACATGGGTGGGTTTACCTTAGGTCAAGGCATCAAGTAGTTTCACGTGACACCACTTTGTCGGAATTTTTTTTACTAAATATCTATATATAATTAAAAGCCAAGACAAAAATAGAGGATTAATTGAGTAAAATGACACTTTTTGACACAAAGAGCCACACAACTCATTTGGTCAGTGCGTTTTCAACATAGGTTCAGGAGTTTTAATCTCGGTGTTCTCGTTTAGTGTTTAAAGTTTTTGCTCTTTAATCTACAAAGTGATACACGTCCAGGTTCGAACCTTCGACCTCTTAGTAGTTAACAAAACGTTGAACCAATTACTCCAGTGTCACATCAGTAGACTTTACCGTATATGACGTATTGAGAAGGATGTTGCTTCTTCCCTGATTAGTTGAGGTGCTGCATGTTTTCTCTTTTCTTCTTTCGTTTCATCTTGCTCGCCAATGATATGATTTGTAGAATTCAATGAATTATTTTGGGATCATTTGATGCCCTATATAAAAGTGTTCAGTAATATTTTTGATGAGGTTATTTTAATTTTTAATACTGTTAAAAAAATGAAAACTCATCAAGAAGAGTTGGTAGTAATATATGAGTTGTCTTTTATTTATAATTTTGTTCCTTTTTAATATGATGTTACATTATTTTATTTACTTCTCATTTTAAAATGTGACACTGTTTACGAAAAATCTTGCGAATGCCATTGCTTATAAAGGGTAATTGTTTACTGATGCATTAAGTAACCGTTGCTTCTTCATGGTCCTTCACTAGGCATTTTGATTAGTAGTAAAGGGGGTTCTTGGTGGGGTGGGCATGTGCTTGGTGATGAGGTGGGAACTTAGCTTCGCTAGAAAAGGTTTACTGTAGCATTTGATAATCAAGTTAAGCAATGCTGTAACATTTTGTAAGCACCTAAATAATTCCAATATGTGTTCGTCTGCATTTCTATATGTAATTGTTTTGTTGATTTAATTCTTTGAGTAACACAAGTACTTTGTAATTTTCAGGAAGAGCGAACCAGAGCACATTATAAACAGGTAACTTCTTTTGCTATTTTATTCCCTATATGTTGTGTCTGAGTGGTTCATTTTTTCCTCATGTCAAGCACTTTAATTAGAGAGTTTTTGCAAAGATTTACCCGAACGATCCCTTTGTTTCTAGCTATATATCACGTAATTCACATTTATGCCAGCAAAAATATCTGAATGGTTGAAGAACCGCTAGGTTGATACTTGAAATAATGAGGTAGTCAAGCGTTCAATTCTTCAGTTATTTATCAGTGCATACAGTATACTGAACCAATGTTCATTTGTTTCCAATTTTGTTCTTCAGTATGGGCCTGATTAATGCGCTATTAATGCATAACTAGCTGGTTCTGGCAAGTTACACTGAAAGGTGCGACTCATCCAAAAGCTGCAATAAATTAACTGTAGCTAAAGATTAGGTCCCTCCTACCAATTCATCAATTTATGCATCATTTTATTAATATGTACTACAATTTTTTTTAATATTACAAAATAGTGGTGGCAAATGAGCGGGATTAGATCAGATTTGGGCAGATTGAGCTATAAAATGGTTTGGATAGCAATTCACCCATATTAATATGGGTTAAAAGTGGATTGCGTAAAATGGCTCTTAGTGCTAACCCACTTTAATCTCCTAAAGCCAAAATTCTTAAAATCTTTGTTTCTTTTTTTGTAGTTACTACTTGACACCGGTGATATTTCTTTTTGTAATTATTCTTTTTACTTTGTCTTTCTTAATGTTACATTATTCCAGTTTGAGCCAAGATGGATTAGATTGCAATCCTCCCATATTAATATGGTGGATTGGGTAAAATGGTTCAAACCCACTATAATCTCCTAAAGCCAAAATACTGTAAATTTATAGATACCCATATTATTTTCATGATTTAAAAGTAGATTGAAATCCATATTTACCCATTTGAAATATAAATGATCCATCTCATTATAATTAGTTTAATGGACTGATTTTATAAATATGAGCTGAAATTGTCGGTTCTTATAATCTTCTCATACTATAAACTAAACAAACTACTCACTGTACCCCATGTGTTCTCTAATCTTCTCATATACAAAGGATATAAAAATTGCACAATGAATCAGCTTTTGATAAACGGATGTGGACTTCCCCTTATTTTTTTCATTATATGGAGAGGTCAAGAAGGCTTAGTTCTCATTTCCTTTAGTGTAATATCTATTTGATGTTTTGGAATTGCTTTCATCTTCCAATACCTGAATGTCGTATGAACTATTAAAATCTCTATATTCATCTAATCAATCAAGTTAATTATCTTAATGAATACCAACATTTCATCCCTTCTCTCAAATAGTGGGGAGTCGTAATTTTAGTAGTTATTTGCTAGAAATAAAATTGTGCTCTTTATGATGTGGTGATCAAGCAGCAAGAAGATGTACTCTTGCTATGCAGATCACTTTTGAACTAATCTGAAATCATATATTACTTTCTTATTAAATGATCAATTTTTCTCAAGACAATTTGTTGGACGGTCCAACTTGGACCTGTCAATTAAGATGCTATATTTATTATGTTTACTTTGTATGTGGAATACCATTAGATCCTATTTAATGCTTCGACAATTAAAAGTTTGGTGGTACCATATAACTGAGAACCGAATACCGAAGTTTAGAAAAAAAATAGATCTGAAACTGAATCATAGAACCAAATTAGTTCGGTTCTGTTTTGGTTTTTCGATATTTAAAAAACTTATGTCCACCCCTGGTCATTCATCTTGCATTACCGTACAACAATATCCTATGCGGTAAAAGGACGTCAAATATGTTTTTAAGTGATAATATAGCTCTAATCATATAAGAGAATGAAAAAAAGAAGTTAGAATATAGGAATGATAAATAATGAATGCCAGTTCAAAATTCTCAGTAACAAGCAGGTAAACACGCCTAAAAGAGAATAGGAAACAGAAAGAGGTCATCGACAGATTTCTCAATTATAATGGTACTGTTTCAACTTGTACATCCATTCACATCAAGATCTCCTTAATGCTCATACATTCCAATCCAACTGGATCTGGTATAACTTTGATATACTGACTAGCCATTATAAGATTATGATTATCCAAGAACCCAAGTGTGTGATCCACCTTCTCTTCCTGCTTGCTCATTCAACCTTTTAACTGAAAAATTATCTGTTGACATTGGTGTCATTTGCTTTTCTGAAAGATCATTTGAAGTGTCAGGAAATGCGCTTTAAGGCCTAATGATGTTCAGATAAATTGTTTTCCGAAGAATCCTATAATATTACATATTTCTGAAATTCACAAGCTCCGTTTGAATTGGTTTACATCTTAACAAAATATGTAGGTATTTTTCTAAAAGAGAGAAGTAACAATTTCTTTAGGAAAACATGTTCATTGAGTTGTGATGATAGACTCTTTCCACTTTTTAGGTGTGCAATATAGTTACGGTCTGCCTTTCTTTCTCCTAGTATTGAAGGCCCGGTAGTAAAAAGAAGTTATAATCATGTCATTCGCAGAATTGCATCTTCTATTCGGCTTGAGGAAATACATATAGCAACGAGCCATAATTTCTTTCCTTTTCATTTTTTGTAATTAGAAGTCTAAATTCCGATGTTTGCTAATAACAAACAACAAAAAATGGTCATGCTAGATGTGTGACGAACATCAAAAAGAGCGATAGTTCCATAGTGGAAGCGTATCTTGGTTTTCTTCTAGTTTTCATGCATAAAGCAGTTCTACTTTGTGCTATGGTCCTATATTTCACCCCTAGTTATTTATTGTATTGTGATGGGTAAAAGCAACTGCATGGAATTATATAGCAATTGTTACCTGTATTATGGTGGTTGTTTTTCCTTATTAATAGATCCATTGCGTAATTTGTCAGTTGTGACTGTAAGGTAAAGTTAAGTTAATATTGTGTGACACTGCTTCCCTGTTTGAGTATGCATGAGAATCTATGGCTTGCTTAAGCAGCTAATTTTTGACATTGTCATTAAGCTTATTAGTGCTTCGAAAAATAACATTAGCAATATACTTGTATAAAAAAATATACATTAGCAACATGGCCTACAAAGTGAAATTCTCCTCTGCTTTGGTAGACTAGCAGTGTAATGGTAGTACATTTAACATTTCTTGATGTTGTTTTTCCTTCAGATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATA</genome_strand>
        <mrna_strand>AGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAG.........................................................................................................GCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCGAACCAGAGCACATTATAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319057" ref_strand="+" ref_description="SGN-E319057 [cTOB-14-L3]">
      <seq>cagttgcgggatgtaaggaggaggcagtggatgaaatcatgacgttggaggattttttggtgaaagctggagcagttgacgaggaggcactggctggggaggggccagtgcaaggtgaggtgaaggttgaactaagaactgagaggttgagtggtggaatttttgcattccattccccatacatggccatgccgcagcagagcgtgcaaggatatggaaatggaatatatgtgattggacgtggaagagggaagaggaaagccattttggaacctttagataaggcggctctgctgaggcaacgtacgatgattaaaaacagagaatcagctgcccggtctagagaacggaaacaggcttatcaagtggaacttgagtcaatagcagttagattagaggaggagaatgaacagctgttgaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13342" stop="12214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13042" g_stop="12687" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12686" i_stop="12582" i_length="105">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12581" g_stop="12514" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="424" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E319057" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13042" e_stop="12687"/>
          <exon e_start="12581" e_stop="12514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAGGTAAAAAGTATTCTTTGCTGATAGTAGTGATCACTATTAGCCTTTCAATCTATTTTAGCTTTTTGATTGTGTGAACTGAATTTAGATTTTTGTTTATGGGCATAGGCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGA</genome_strand>
        <mrna_strand>CAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGACGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAAGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCCATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATATATGTGATTGGACGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCTGAGGCAACGTACGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAG.........................................................................................................GCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272953" ref_strand="+" ref_description="SGN-E272953 [cLEM-25-G3]">
      <seq>gaaatcgtctgtggcttcgtcgtcttcatcctctacgatgccgaatgatttgctgaatcagcagtattctaataacgggagtaataatagtagtaatttggaggcgacttccatgacggttgatggatttttacggaatgtgtatggggaaggtcaggggacggaggctaatactttgttgaatgcgaatattacgttacttgatgctgctggagcgataacgccgatcagtgattccgagacagcgacggttagtgggatacctttggttaggaggacggtggatgatgtgtggagggaaattgtggaggggaagagggagcagacaatggccgaacttgcgggatgtaaggaggaggcagtggatgaaatcatgacgttggaggatttattggtgaaagctggagcagttgatgaggaggcactggctggggagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13677" stop="12639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13377" g_stop="12939" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E272953" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13377" e_stop="12939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGG</genome_strand>
        <mrna_strand>GAAATCGTCTGTGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGACAATGGCCGAACTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTATTGGTGAAAGCTGGAGCAGTTGATGAGGAGGCACTGGCTGGGGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411590" ref_strand="+" ref_description="SGN-E411590 [STM-14-N18]">
      <seq>actccatttttgaaaatcccacttttctccctcaaatccccaaaacccccaaattattcgaaaccctaggcatttctcttctccccatcgcacattacacaacacaatcatcacctacacagacctctatgtatatacacatttgatgatttgatccaaccagaacaattttacgatattgccccgccggaaaatggcgtcaacgaagctgatggcttcatcggtctcgcgaaattccgatcgaaggacatcgtcggctgcctcgtcgtcttcatcctctacgataccgaatgatttgcacaatcagcagtattcgaataacgggagtaataatagtagtaatttggaggcgacttccatgacggttgatggaattttccgtaatgtgtatggggaaggtcaggggacggagactaatactttgttgaatgcgaatattacgttacttgatgctgttggagcgataacgccgatcagtgattccgagacagcgacggtgagtgtggtacctttggttaggaggacggtggatgatgtgtggagggaaattgtggaggggaagagggagcanagaagagcggaagttgccggctgtaaggaggaggcagtggatgaaatcatgacgctggaggattttctggtgaaagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13923" stop="12673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13623" g_stop="12973" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E411590" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13623" e_stop="12973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATTTTTGAAAATCCCACTTTTCTCCCTCAAATCCCCAAAACCCCCAAATTATTCGAAACCCTAGGCATTTCTCTTCTCCCCATCGCACATTACACAACACAATCATCACTTACACAAACCTCTATGTATATACACACTTGAGGATTTGATCTAAGAAGAAGAGTTTTACGATTTTGCCCCGCCGGAAAATGGCGTCAACTAAGCTGATGGCTTCATCGGCCTCGCGGAATTCCGATCGAAGGAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGG</genome_strand>
        <mrna_strand>ACTCCATTTTTGAAAATCCCACTTTTCTCCCTCAAATCCCCAAAACCCCCAAATTATTCGAAACCCTAGGCATTTCTCTTCTCCCCATCGCACATTACACAACACAATCATCACCTACACAGACCTCTATGTATATACACATTTGATGATTTGATCCAACCAGAACAATTTTACGATATTGCCCCGCCGGAAAATGGCGTCAACGAAGCTGATGGCTTCATCGGTCTCGCGAAATTCCGATCGAAGGACATCGTCGGCTGCCTCGTCGTCTTCATCCTCTACGATACCGAATGATTTGCACAATCAGCAGTATTCGAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGAATTTTCCGTAATGTGTATGGGGAAGGTCAGGGGACGGAGACTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGTTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTGAGTGTGGTACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCANAGAAGAGCGGAAGTTGCCGGCTGTAAGGAGGAGGCAGTGGATGAAATCATGACGCTGGAGGATTTTCTGGTGAAAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566852" ref_strand="+" ref_description="SGN-E566852 [10886]">
      <seq>cttttctccctcaaatccccaaaacccccaaattattcgaaaccctagcatttctcttctccccatcgcacattacacaacacaatcatcacctacacaaacctctatgtatatacacatttgaggatttgatccaaccagaacaaatttacgattttgccccgccggnaaaatggcgtcaacgaagctgatggcttcatcggcctcgcggaattccgatcgaaggaaatcgtcggctgcctcgtcgtcttcatcctctacgatgccgaatgatttgcacaatcagcagtattcgaataacgggagtaataatagtagtaatttggaggcgacttccatgacggttgatggaattttccgtaatgtgtatggggaaggtcaggggacggagactaatactttgttgaatgcgaatattacgttacttgatgctgttggagcgataacgccgatcagtgattccgagacagcgacggtgagtggggtacctttggttaggaggacggtggatgatgtgtggagggaaattgtggaggggaagagggagcagagaagagcggaagttgctggctgtaaggaggaggcagtggatgaaatcatgacgctggaggatttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13902" stop="12684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13602" g_stop="12984" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E566852" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13602" e_stop="12984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCCTCAAATCCCCAAAACCCCCAAATTATTCGAAACCCTAGGCATTTCTCTTCTCCCCATCGCACATTACACAACACAATCATCACTTACACAAACCTCTATGTATATACACACTTGAGGATTTGATCTAAGAAGAAGAGTTTTACGATTTTGCCCCGCCGG-AAAATGGCGTCAACTAAGCTGATGGCTTCATCGGCCTCGCGGAATTCCGATCGAAGGAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTG</genome_strand>
        <mrna_strand>CTTTTCTCCCTCAAATCCCCAAAACCCCCAAATTATTCGAAACCCTA-GCATTTCTCTTCTCCCCATCGCACATTACACAACACAATCATCACCTACACAAACCTCTATGTATATACACATTTGAGGATTTGATCCAACCAGAACAAATTTACGATTTTGCCCCGCCGGNAAAATGGCGTCAACGAAGCTGATGGCTTCATCGGCCTCGCGGAATTCCGATCGAAGGAAATCGTCGGCTGCCTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCACAATCAGCAGTATTCGAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGAATTTTCCGTAATGTGTATGGGGAAGGTCAGGGGACGGAGACTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGTTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTGAGTGGGGTACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGAGCGGAAGTTGCTGGCTGTAAGGAGGAGGCAGTGGATGAAATCATGACGCTGGAGGATTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581889" ref_strand="+" ref_description="SGN-E581889 [7520]">
      <seq>gaatccgatcgaaggaaatcgtcggctgcctcgtcgtcttcatcctctacgatgcggggatgatttgcacaatcagcagtattcgaataacgggagtaataatagtagtaatttggaggcgacttcccatgacggttgatggaattttccgtcaatgtgtatggggaaggtcaggggacggagactaatactttgttgaatgcgaatattacgttacttgatgctgttggagcgataacgccgatcagtgattccgagacagcgacggtgagtggggtacctttggttaggaggacggtggatgatgtgtggagggaaattgtggagcgggaagagggagcagaaagagcggaagttgctgcgctgtaaggaggaggcagtggatgaaatcatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13692" stop="12699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13392" g_stop="12999" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E581889" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13392" e_stop="12999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCCGATCGAAGGAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGC-CGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTT-CCATGACGGTTGATGGATTTTTACG-GAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAG-GGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGC-GGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACG</genome_strand>
        <mrna_strand>GAAT-CCGATCGAAGGAAATCGTCGGCTGCCTCGTCGTCTTCATCCTCTACGATGCGGGGATGATTTGCACAATCAGCAGTATTCGAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCCATGACGGTTGATGGAATTTTCCGTCAATGTGTATGGGGAAGGTCAGGGGACGGAGACTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGTTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTGAGTGGGGTACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGCGGGAAGAGGGAGCAGA-AAGAGCGGAAGTTGCTGCGCTGTAAGGAGGAGGCAGTGGATGAAATCATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581680" ref_strand="+" ref_description="SGN-E581680 [7307]">
      <seq>tgccaattctggaactccatttttgaaaatcccacttttctccctcaaatccccaaaaccccaaattattcgaaacctaggcatttctcttgctccccatcgcacgattacacaagacaatcatcacctacacaaacctctatgtatatacacatttgaggatctgatccaaccagaccaaatttacgattttgccccgccggaaaatggcgtcaacgaagctgatggcttcatcggcctcgcggaattccgatcgaaggaaatcgtcagctgcctcgtcgtcttcatcctctacgatgccgaatgagtttgcacaatcagcagtattcgaataacgggagtactaatagtagtaatttggaggcgactttcatgacggttgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13936" stop="12951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13636" g_stop="13250" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E581680" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13636" e_stop="13250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAATTCTGGAACTCCATTTTTGAAAATCCCACTTTTCTCCCTCAAATCCCCAAAACCCCCAAATTATTCGAAACCCTAGGCATTTCTCTT-CTCCCCATCGCAC-ATTACACAACACAATCATCACTTACACAAACCTCTATGTATATACACACTTGAGGATTTGATCTAAGAAGAAGAGTTTTACGATTTTGCCCCGCCGGAAAATGGCGTCAACTAAGCTGATGGCTTCATCGGCCTCGCGGAATTCCGATCGAAGGAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGA-TTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGAT</genome_strand>
        <mrna_strand>TGCCAATTCTGGAACTCCATTTTTGAAAATCCCACTTTTCTCCCTCAAATCCCCAAAA-CCCCAAATTATTCGAAA-CCTAGGCATTTCTCTTGCTCCCCATCGCACGATTACACAAGACAATCATCACCTACACAAACCTCTATGTATATACACATTTGAGGATCTGATCCAACCAGACCAAATTTACGATTTTGCCCCGCCGGAAAATGGCGTCAACGAAGCTGATGGCTTCATCGGCCTCGCGGAATTCCGATCGAAGGAAATCGTCAGCTGCCTCGTCGTCTTCATCCTCTACGATGCCGAATGAGTTTGCACAATCAGCAGTATTCGAATAACGGGAGTACTAATAGTAGTAATTTGGAGGCGACTTTCATGACGGTTGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328201" ref_strand="+" ref_description="SGN-E328201 [cTOC-21-G20]">
      <seq>tttcttagtgaacacatctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttaaagaattcaagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacagaggaaaatagtaatgaagaagatttagagatcagcaaaatcctcagaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttcaaggttcttgagaaaacaaatattggaaggcatgtaaacaagctgcgaaagcattcatcaaatgatgtaagaagacttgttaaactactcatcaggagatggaaagatattgttgatgaatgggtgagattaaatacactaatggaagacacagatgaagcgaatatttcaaatgattcatcatcttattgcgatcataagcatagcgtcgagaagaggaacaacattagtccatcgtcaaagcggctacgtgaggattacctagaagaacattatgccaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20225" stop="18217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19925" g_stop="19560" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="435" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19026" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="518" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18906" g_stop="18848" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="577" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18847" i_stop="18737" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18736" g_stop="18690" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="624" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18689" i_stop="18598" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18597" g_stop="18522" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="700" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E328201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19925" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19026"/>
          <exon e_start="18906" e_stop="18848"/>
          <exon e_start="18736" e_stop="18690"/>
          <exon e_start="18597" e_stop="18522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAGGTTTTCCTTAACCTTCTTCTTAACACTAATAATTTTATTTTCTTCTGTATAATTAGTTACTTTATTTATATATATTCATTTAAGTTAAATATAGAATCATTTTTTGGGTAATTTTATAGGAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAGGTACATAATCATAATATTAAACAACATCTTAATTTTCCATCACTTGGTGATGAATTTTTTATTTTGTATGATCTCAAAAATCACCATTAACTTTTATTTGAACTTTTAAAGATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAGGTATTTATAATTTGAAACATAATATTTATTTTTAATTCTAATTTATTATATACTTTTAAGTTTCGTAAATATTAATCGTTAAATGAAAATAGCATAGCGTCGAGAAGAGGAACAACATTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCTAGAAGAACATTATG</genome_strand>
        <mrna_strand>TTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG.......................................................................................................................................................................................................................................AAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAG.......................................................................................................................GAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAG...............................................................................................................ATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAG............................................................................................CATAGCGTCGAGAAGAGGAACAACATTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCTAGAAGAACATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326581" ref_strand="+" ref_description="SGN-E326581 [cTOC-17-J8]">
      <seq>tctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttaaagaattcaagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacagaggaaaatagtaatgaagaagatttagagatcagcaaaatcctcagaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttcaaggttcttgagaaaacaaatattggaaggcatgtaaacaagctgcgaaagcattcatcaaatgatgtaagaagacttgttaaactactcatcaggagatggaaagatattgttgatgaatgggtgagattaaatacactaatggaagacacagatgaagcgaatatttcaaatgattcatcatcttattgcgatcataagcatagcgtcgagaagaggaacaactttagtccatcgtcaaagcggctacgtgaggattacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20209" stop="18236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19909" g_stop="19560" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="419" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19026" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="502" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18906" g_stop="18848" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="561" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18847" i_stop="18737" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18736" g_stop="18690" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="608" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18689" i_stop="18598" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18597" g_stop="18536" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="670" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E326581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19909" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19026"/>
          <exon e_start="18906" e_stop="18848"/>
          <exon e_start="18736" e_stop="18690"/>
          <exon e_start="18597" e_stop="18536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAGGTTTTCCTTAACCTTCTTCTTAACACTAATAATTTTATTTTCTTCTGTATAATTAGTTACTTTATTTATATATATTCATTTAAGTTAAATATAGAATCATTTTTTGGGTAATTTTATAGGAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAGGTACATAATCATAATATTAAACAACATCTTAATTTTCCATCACTTGGTGATGAATTTTTTATTTTGTATGATCTCAAAAATCACCATTAACTTTTATTTGAACTTTTAAAGATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAGGTATTTATAATTTGAAACATAATATTTATTTTTAATTCTAATTTATTATATACTTTTAAGTTTCGTAAATATTAATCGTTAAATGAAAATAGCATAGCGTCGAGAAGAGGAACAACATTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCT</genome_strand>
        <mrna_strand>TCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG.......................................................................................................................................................................................................................................AAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAG.......................................................................................................................GAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAG...............................................................................................................ATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAG............................................................................................CATAGCGTCGAGAAGAGGAACAACTTTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214191" ref_strand="+" ref_description="SGN-E214191 [cLEC-77-K21]">
      <seq>tgtccctaactcctccttctctctttcccttatgctctgtttcttagtgaacacatctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttacagaattcgagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacataggaaaatagtaatgaacaagatttacagatcagcaaaatcctcacaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttctaggatcttgacaaaacacatattggaaggcatgtaaacaagctgcgaaagcattcatcaaatgatgtaagaagacttgttaaactactcatcatgagatggaaagatattgttgatgaatgggtgagattagatactctaatggaagacacagatgaagcgaatatttcgaatgattcatcatcttattgcgatcataagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20264" stop="18390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19560" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="474" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19026" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="557" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18906" g_stop="18848" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="616" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18847" i_stop="18737" i_length="111">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.760" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18736" g_stop="18690" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="663" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E214191" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19026"/>
          <exon e_start="18906" e_stop="18848"/>
          <exon e_start="18736" e_stop="18690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAGGTTTTCCTTAACCTTCTTCTTAACACTAATAATTTTATTTTCTTCTGTATAATTAGTTACTTTATTTATATATATTCATTTAAGTTAAATATAGAATCATTTTTTGGGTAATTTTATAGGAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAGGTACATAATCATAATATTAAACAACATCTTAATTTTCCATCACTTGGTGATGAATTTTTTATTTTGTATGATCTCAAAAATCACCATTAACTTTTATTTGAACTTTTAAAGATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAG</genome_strand>
        <mrna_strand>TGTCCCTAACTCCTCCTTCTCTCTTTCCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTACAGAATTCGAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACATAGGAAAATAGTAATGAACAAGATTTACAGATCAGCAAAATCCTCACAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCTAGGATCTTGAC.......................................................................................................................................................................................................................................AAAACACATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAT.......................................................................................................................GAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAGATACTCTAATGGAAGACACAG...............................................................................................................ATGAAGCGAATATTTCGAATGATTCATCATCTTATTGCGATCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326591" ref_strand="+" ref_description="SGN-E326591 [cTOC-17-N8]">
      <seq>catctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttaaagaattcaagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacagaggaaaatagtaatgaagaagatttacagatcagcaaaatcctcagaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttcaaggttcttgagaaaacaaatattgggaagcatgtaaacaagctgcgaaagcattcatcaaatgatgtaagaagacttgttaaactactcatcaggagatggaaagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20211" stop="18592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19911" g_stop="19560" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="421" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19026" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="504" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18906" g_stop="18892" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="519" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E326591" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19911" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19026"/>
          <exon e_start="18906" e_stop="18892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAGGTTTTCCTTAACCTTCTTCTTAACACTAATAATTTTATTTTCTTCTGTATAATTAGTTACTTTATTTATATATATTCATTTAAGTTAAATATAGAATCATTTTTTGGGTAATTTTATAGGAGATGGAAAGATAT</genome_strand>
        <mrna_strand>CATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTACAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG.......................................................................................................................................................................................................................................AAAACAAATATTGGGAAGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAG.......................................................................................................................GAGATGGAAAGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211966" ref_strand="+" ref_description="SGN-E211966 [cLEC-66-B7]">
      <seq>tgtccctaactcctccttctctcttttccttatgctctgtttcttagtgaacacatctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttaaagaattcaagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacagaggaaaatagtaatgaagaagatttagagatcagcaaaatcctcagaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttcaaggttcttgagaaaacaaatattggaaggcatgntaacaagctgcgaaagcatttcatcaatgatgtaagaagactttgttaactactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20264" stop="18728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19560" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="474" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19028" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="555" r_length="81" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E211966" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCA-TTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATC</genome_strand>
        <mrna_strand>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG.......................................................................................................................................................................................................................................AAAACAAATATTGGAAGGCATGNTAACAAGCTGCGAAAGCATTTCATC-AATGATGTAAGAAGACTTTGTTAACTACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211967" ref_strand="+" ref_description="SGN-E211967 [cLEC-66-B9]">
      <seq>gtccctacctcctccttctctctataccttatgctctgtttcttagtgaacacatctattttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttaaagaattcaagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtctaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcctgaaaagaattgagagaaatatcgatgatgacaagttaaaaacagaggaaaatagtaatgaagaagatttatagatcagcaaaatcctcagaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttcaaggttcttgagaaaacaaatattggaaggcatgtacacaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20263" stop="18775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19963" g_stop="19560" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="474" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19075" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="508" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E211967" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19963" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCT-TTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGC</genome_strand>
        <mrna_strand>GTCCCTACCTCCTCCTTCTCTCTATACCTTATGCTCTGTTTCTTAGTGAACACATCTATTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCTAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCCTGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTATAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG.......................................................................................................................................................................................................................................AAAACAAATATTGGAAGGCATGTACACAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323440" ref_strand="+" ref_description="SGN-E323440 [cTOC-7-G20]">
      <seq>tccttctctcttttccttatgctctgtttgttagtgaacacatctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttaaagaattcaagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacagaggaaaatagtaatgaagaagatttagagatcagcaaaatcctcagaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttcaaggttcttgaggtaatttaattaacaatcatgattttattataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20251" stop="19006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19951" g_stop="19560" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19306" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="495" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E323440" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19951" e_stop="19560"/>
          <exon e_start="19408" e_stop="19306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGA</genome_strand>
        <mrna_strand>TCCTTCTCTCTTTTCCTTATGCTCTGTTTGTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="26616" stop="25723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26316" g_stop="26033" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26316" e_stop="26033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG--TTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAACTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACATGAAG--ATACATTTTTGCATGTGTATATTACAATTTTCTCTCGCTTTATACAAAACAGAA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATA-TACAATTTTCTCTCGCTTTATACAAAATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315699" ref_strand="+" ref_description="SGN-E315699 [cTOA-26-E9]">
      <seq>cctttttaagtcttggattgagcagaaaagaagacttttttcatcagtttttcaagaatatttagtgtgaagtgattagcattctctttgataatcttaatgagttttgatgcacaggattgtttatgaattctttggttgctgaatttgcaagttttttatgttagttgctgaatctggagtttagttgaatttgagttctcttacagttgtttgcgaagcttgaaattttagaagagtaggtgttcagtttggtgaatttaagtggttttggagttcatcatttgaaatggatagtagtgggcttaatggaaatcagagtacaagggattcagaagtaccgaacaatgctgatgaacggtgtgatgctaccttttccgatgaattagatggctggagaacaagttcttcatcacttaaggacattaggtcttcagatgagcatactgatgagtgtttgactccagaaatggaatacgagagcacacatcggagttctagtcctccgcctcaagctcggagaggtttggagcactgcattactgcacctgtgactattggcggaggtcttttcccctgaagccaggatatggcatttttcagatctttgactgagaggagggttagtccaagacataatgtaatattggatagactttctgaacgtggaaagcaaagctcatcgcagagctggtaaagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="39543" stop="44247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39843" g_stop="39945" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39946" i_stop="40595" i_length="650">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40596" g_stop="41016" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="524" r_length="421" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41017" i_stop="42829" i_length="1813">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42830" g_stop="42978" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="673" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43917" g_stop="43947" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="703" r_length="30" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E315699" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39843" e_stop="39945"/>
          <exon e_start="40596" e_stop="41016"/>
          <exon e_start="42830" e_stop="42978"/>
          <exon e_start="43917" e_stop="43947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGAGTAAGTGTTCCTCTACAACCCAACAAAGGAATGAAGCTTCTTTTATCAAAAACTGCACACTATCTTGGTGTTTTTTTTTTCTAGCTTCCCTCCATTTTCATCCATAAGAAAACCAATTATTGATGATAATAATCTCCAACTTTGAATGAGTTTTTTCAATCTATAAGACGAAAATGATAAAGTTGCTTTCTTGGTAATTACATGTTGGACACCTGGTAGTTGAGTATTCACTTTCTTTAATGATTGAATCGCCAAAAGGATTAGTCTTTTTGGTATCTTCTGTTATGTGGGGTTTTCCTTTTATGCAACTTCTTAAACATATTTGTTGTTTGTAGTGTTCCTGGTGTGCTCTATTTGATAATATGATGTATTTTGTGAGTTTCCTGTAGATGTTGTTATAATTACTATTCTTTTTGAAGTTTGTGCTGATTTTATACAATGCGATGCTGTTGACTGTTTGGTTGTGTTTCTTTCTTCTTTCTAATTGGTTGTTGCAGAGGGTAGATTAGCTTTTAACATTGCTTGTGGTGTAGTTTGGAAAGTTTTAGCTTTAAATCAAGATTTGTTTTTTCATTGTGGGGTTGCTGAATTTTGGTGAATGGAAGTGTTCTGCATTTTGGGGTTGCTGATATTTTCTCATTTCTTAGCAGGTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAGGTTAGTGCTTCATCTTCCTAAGCTTTTCTCTGTTGATAAATAATGAATTTGAGAAAACCTGCTACAGATTCTTCCTTGTGCATTTAGTTTAGTCTTCTCTCAATAAATTTAGAATAAGAGTCATGATCTTGGCAAAATGTTATATTGACAAGGATGTAAATGATAGTTAGAGGGGAGAAGTATGAGCGAGTGCCAAGTTACTGGGATAGTAGGACTTCAGAATGATCCTGTGGTTTTTTCTAAAAAAAAACTTTTTTGCTTTTTGTTTCATAATGCTGTTCACTAGGGTGTAATTTGTCTTTGTGGGACGAGTATACTAATAAGTATAATTCTTCTTTGATTGATAGTAAAACTATTTCTTGTGTTGTATCTTTATTCTATTTAATATAAAGTGAATCATGTATGTGTTTTTGTTCTATGTTGGATGACAAAATGGTCTAGGAAACTATCTTATTTATGATGTTAAGCATCATTGTTGTCCTCTGGCTAACAGTTTGATGAATGGAACTATTATTTTCTGTCCCACCAAACGGGCTGGTTCCTTTTCCTTTATTATTCTCTCTCATTACTACTTGTCATCTATGAAATCAATCTAGAAGGAGTTCAAATAATCCTATCTAGATCGACATGTAAGCTTAGTTGTGAATTTCAGACTATTAAGGCTTGTCCTATATTACTCAGCAAGCATTATAGAAAAGATGAGAGTAACTTTTCCTGTCATAGACCTGTATAAATAAATAAAAGTGTTCTGGCTCTAAGTTTTAAGTATATAACTGTGCCTCATCTTACAACTCTGTTCTAAAAGGAGGGTTCATTGACATTTTTCATCTCAAGGTCAAATTATGCCCTTGTCATCCTTTTCTGTCTCTGGAATTCCTTGAGCTAATACACCTCTGTACAGCTATCTGTCGAAAGTCTTGCTTCCTTATAATTGACCATCTGGTTGTTGATTTTGGTTCAAGTTACTTTAAGGGTCACATATTCTATGAAGAGACTGAACTTTTTTTGGGGCTGCAGTGTCTTGCTCGAGTTTCATGAGCTAAATTATATTCACCTGCTTGTTTGGTCCAAATGTGAAGAATTCTTTCCAGTGCTCTATATTCCAAGTTTCACCGCTACCCCTACAAAGGAAAACCAATGCATCAACGAAATTAATGACAAGCAAAACTAACATCATTTGTGGAGGACAGGGTTTGACAGACAACGATGTCAAACCAAGTTACTAAAAGATGGAACCTTGATTTAAAACCAAACATGAAAAATATCAAATACCCAAAAGTCTCCAGAGAACTAACTTTAACTGCTCCGTCTCCTTACAAGAGAAAAATGCTTTTGCTCACGGTTTCTTCTATGCTTCCCTCAAAGCTAAGGTACATTATAGACTTCCTCCTTTGTCACTTCTCACATCAGCTCCACTTTCCTCCCTCCAAAGCAAAAGCTATCTCCTGTATCACATTTAGGATATTCTGCCAGTATGCCGTATTGCTGACAATGATTTCATGTATAGAGTGGCAAAATACTCATGAATTAAACTTGGGAACCTCTTAGCATTGTCTTTCTGAAAATTTAGTAGTAAGAAAATATTGATTTGGTCTTCTATAAGCAATTGAAGCAAATCGTTGCTGCATATGATTCTTTGTTTTTTCTTTTCTTTGCTTTTTCTCTTCTCTTTTGCGTACTTGCTTCAGAAGGGCTTAGACATTTATATCTATGTTGATTGGATAAAGCTGACTATTGTGGTTTACTGGATTAGATGTATTTCTTTCTCATACAGGACTTTTGCATTTTTTTTTTTTTTTTGTTTAACTTGTAGGTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTT-CCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAGGTAATTTTGTTATTGACGTCTCCAGCTTTGAGATGCCTATTATCCGACAACCAATTGTGTAGTGCTTTGCTGTGAGATTCTATAATAGTCAACATGGCGTAGGAGTTGAATAGATTTACTAGTCTTGGTTACGATATGCATGTAAATGTGTCAAAAGTTGTTGCAATTTGTTAGAGTTTAATATTTTGTCCTTGACACTAGTTTTGGCTTGAATTTGTTTGATTTGATTGTAAACTTGAAGCATGGAAAGATCCTTTAATGTTGGAGAGTGATAAGGAGTAGAAAAGCTGATATGGGAAGTGCTAAGTGCATGAATAACGAGACTGCTTGTTATCTGAATAAATATGATTTACCTGAACCAATAAAACTTAAAAGAATCCTAGAATGCTGAGCATTATTTTTTCAAATGATGCTTAGACCATGTGAAGCTGGCAATTTGTATTGACCAAGTACTTATTTAGACTTACTGATACAAAATTTACTTTGACCATTTGGTTTTTGAGCTATTTTTTTGCTTTTAACTGATGGAGTTGATATGTATGTTGTAGGGCTCCGCTGAGTCAAGTTGCTATTTAATAAGTGGCTGAAACAAAACCACCCTCTTTAACAAAGTCAATTTTTTCTGCACATAATCACATGTATCCGGCCTGAATCACCGCTTCATACATTAGGTTGTCCATGCCTGTATATGTAAAAATAGCAGCTAATCAAACAGGTTAAGAATTCTTGCTATTTGCCTATGTAAGTATGGATTATGGAGACCCAGGACTGCCCCTCTGCAGCGTCTGAAAGAACCACCACAAATTACTTACATGTGTTTTTTTACTTTATCCATCTGGAAAATGATATACCTTTTCATTTTCTTGCCATTAAGTTGCTGAATCCTTCTTATTCACTTACCATTTCCTCATATTTCCTTCTGTTCTTAATGTCACCAGCAAAAGCTCATCGCAGAGCTGGTAAAGATCC</genome_strand>
        <mrna_strand>CCTTTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGGAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCCTGAA-GCCAGGATATGGCATTTTTCAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AAAGCTCATCGCAGAGCTGGTAAAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254257" ref_strand="+" ref_description="SGN-E254257 [cLEG-27-G2]">
      <seq>ttttaagtcttggattgagcagaaaagaagacttttttcatcagtttttcaagaatatttagtgtgaagtgattagcattctctttgataatcttaatgagttttgatgcacaggattgtttatgaattctttggttgctgaatttgcaagttttttatgttagttgctgaatctggagtttagttgaatttgagttctcttacagttgtttgcgaagcttgaaattttagaagagtaggtgttcagtttggtgaatttaagtggttttggagttcatcatttgaaatggatagtagtgggcttaatggaaatcagagtacaagggattcagaagtaccgaacaatgctgatgaacggtgtgatgctaccttttccgatgaattagatggctggagaacaagttcttcatcacttaaggacattaggtcttcagaatgagcatactgatgagtgtttgactccagaaatgaaatacgagagcacacatcggagttctagtcctccgcctcaagctcggagaggtttggagcactgcattactgcacctgtgactattggcggaggtcttttccctgaaggccacgatatggcattttcaagatctttgactgagaggagggttagtccaagacataatgtaatattggatagactgtctgaacctggaaagcagaagctcatcgcagagctggtaaagatccaaggggatggaacagtagaggttgaccttactaagagtacgcctgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="39546" stop="44297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39846" g_stop="39945" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39946" i_stop="40595" i_length="650">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40596" g_stop="41016" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="522" r_length="422" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41017" i_stop="42829" i_length="1813">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42830" g_stop="42978" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="671" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938">
            <donor d_prob="0.657" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43917" g_stop="43997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="752" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E254257" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39846" e_stop="39945"/>
          <exon e_start="40596" e_stop="41016"/>
          <exon e_start="42830" e_stop="42978"/>
          <exon e_start="43917" e_stop="43997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGAGTAAGTGTTCCTCTACAACCCAACAAAGGAATGAAGCTTCTTTTATCAAAAACTGCACACTATCTTGGTGTTTTTTTTTTCTAGCTTCCCTCCATTTTCATCCATAAGAAAACCAATTATTGATGATAATAATCTCCAACTTTGAATGAGTTTTTTCAATCTATAAGACGAAAATGATAAAGTTGCTTTCTTGGTAATTACATGTTGGACACCTGGTAGTTGAGTATTCACTTTCTTTAATGATTGAATCGCCAAAAGGATTAGTCTTTTTGGTATCTTCTGTTATGTGGGGTTTTCCTTTTATGCAACTTCTTAAACATATTTGTTGTTTGTAGTGTTCCTGGTGTGCTCTATTTGATAATATGATGTATTTTGTGAGTTTCCTGTAGATGTTGTTATAATTACTATTCTTTTTGAAGTTTGTGCTGATTTTATACAATGCGATGCTGTTGACTGTTTGGTTGTGTTTCTTTCTTCTTTCTAATTGGTTGTTGCAGAGGGTAGATTAGCTTTTAACATTGCTTGTGGTGTAGTTTGGAAAGTTTTAGCTTTAAATCAAGATTTGTTTTTTCATTGTGGGGTTGCTGAATTTTGGTGAATGGAAGTGTTCTGCATTTTGGGGTTGCTGATATTTTCTCATTTCTTAGCAGGTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAG-ATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAGGTTAGTGCTTCATCTTCCTAAGCTTTTCTCTGTTGATAAATAATGAATTTGAGAAAACCTGCTACAGATTCTTCCTTGTGCATTTAGTTTAGTCTTCTCTCAATAAATTTAGAATAAGAGTCATGATCTTGGCAAAATGTTATATTGACAAGGATGTAAATGATAGTTAGAGGGGAGAAGTATGAGCGAGTGCCAAGTTACTGGGATAGTAGGACTTCAGAATGATCCTGTGGTTTTTTCTAAAAAAAAACTTTTTTGCTTTTTGTTTCATAATGCTGTTCACTAGGGTGTAATTTGTCTTTGTGGGACGAGTATACTAATAAGTATAATTCTTCTTTGATTGATAGTAAAACTATTTCTTGTGTTGTATCTTTATTCTATTTAATATAAAGTGAATCATGTATGTGTTTTTGTTCTATGTTGGATGACAAAATGGTCTAGGAAACTATCTTATTTATGATGTTAAGCATCATTGTTGTCCTCTGGCTAACAGTTTGATGAATGGAACTATTATTTTCTGTCCCACCAAACGGGCTGGTTCCTTTTCCTTTATTATTCTCTCTCATTACTACTTGTCATCTATGAAATCAATCTAGAAGGAGTTCAAATAATCCTATCTAGATCGACATGTAAGCTTAGTTGTGAATTTCAGACTATTAAGGCTTGTCCTATATTACTCAGCAAGCATTATAGAAAAGATGAGAGTAACTTTTCCTGTCATAGACCTGTATAAATAAATAAAAGTGTTCTGGCTCTAAGTTTTAAGTATATAACTGTGCCTCATCTTACAACTCTGTTCTAAAAGGAGGGTTCATTGACATTTTTCATCTCAAGGTCAAATTATGCCCTTGTCATCCTTTTCTGTCTCTGGAATTCCTTGAGCTAATACACCTCTGTACAGCTATCTGTCGAAAGTCTTGCTTCCTTATAATTGACCATCTGGTTGTTGATTTTGGTTCAAGTTACTTTAAGGGTCACATATTCTATGAAGAGACTGAACTTTTTTTGGGGCTGCAGTGTCTTGCTCGAGTTTCATGAGCTAAATTATATTCACCTGCTTGTTTGGTCCAAATGTGAAGAATTCTTTCCAGTGCTCTATATTCCAAGTTTCACCGCTACCCCTACAAAGGAAAACCAATGCATCAACGAAATTAATGACAAGCAAAACTAACATCATTTGTGGAGGACAGGGTTTGACAGACAACGATGTCAAACCAAGTTACTAAAAGATGGAACCTTGATTTAAAACCAAACATGAAAAATATCAAATACCCAAAAGTCTCCAGAGAACTAACTTTAACTGCTCCGTCTCCTTACAAGAGAAAAATGCTTTTGCTCACGGTTTCTTCTATGCTTCCCTCAAAGCTAAGGTACATTATAGACTTCCTCCTTTGTCACTTCTCACATCAGCTCCACTTTCCTCCCTCCAAAGCAAAAGCTATCTCCTGTATCACATTTAGGATATTCTGCCAGTATGCCGTATTGCTGACAATGATTTCATGTATAGAGTGGCAAAATACTCATGAATTAAACTTGGGAACCTCTTAGCATTGTCTTTCTGAAAATTTAGTAGTAAGAAAATATTGATTTGGTCTTCTATAAGCAATTGAAGCAAATCGTTGCTGCATATGATTCTTTGTTTTTTCTTTTCTTTGCTTTTTCTCTTCTCTTTTGCGTACTTGCTTCAGAAGGGCTTAGACATTTATATCTATGTTGATTGGATAAAGCTGACTATTGTGGTTTACTGGATTAGATGTATTTCTTTCTCATACAGGACTTTTGCATTTTTTTTTTTTTTTTGTTTAACTTGTAGGTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAGGTAATTTTGTTATTGACGTCTCCAGCTTTGAGATGCCTATTATCCGACAACCAATTGTGTAGTGCTTTGCTGTGAGATTCTATAATAGTCAACATGGCGTAGGAGTTGAATAGATTTACTAGTCTTGGTTACGATATGCATGTAAATGTGTCAAAAGTTGTTGCAATTTGTTAGAGTTTAATATTTTGTCCTTGACACTAGTTTTGGCTTGAATTTGTTTGATTTGATTGTAAACTTGAAGCATGGAAAGATCCTTTAATGTTGGAGAGTGATAAGGAGTAGAAAAGCTGATATGGGAAGTGCTAAGTGCATGAATAACGAGACTGCTTGTTATCTGAATAAATATGATTTACCTGAACCAATAAAACTTAAAAGAATCCTAGAATGCTGAGCATTATTTTTTCAAATGATGCTTAGACCATGTGAAGCTGGCAATTTGTATTGACCAAGTACTTATTTAGACTTACTGATACAAAATTTACTTTGACCATTTGGTTTTTGAGCTATTTTTTTGCTTTTAACTGATGGAGTTGATATGTATGTTGTAGGGCTCCGCTGAGTCAAGTTGCTATTTAATAAGTGGCTGAAACAAAACCACCCTCTTTAACAAAGTCAATTTTTTCTGCACATAATCACATGTATCCGGCCTGAATCACCGCTTCATACATTAGGTTGTCCATGCCTGTATATGTAAAAATAGCAGCTAATCAAACAGGTTAAGAATTCTTGCTATTTGCCTATGTAAGTATGGATTATGGAGACCCAGGACTGCCCCTCTGCAGCGTCTGAAAGAACCACCACAAATTACTTACATGTGTTTTTTTACTTTATCCATCTGGAAAATGATATACCTTTTCATTTTCTTGCCATTAAGTTGCTGAATCCTTCTTATTCACTTACCATTTCCTCATATTTCCTTCTGTTCTTAATGTCACCAGCAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACT</genome_strand>
        <mrna_strand>TTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGAATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCACGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTGTCTGAACCTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261249" ref_strand="+" ref_description="SGN-E261249 [cLEG-68-I1]">
      <seq>ttaagtcttggattgagcagaaaagaagacttttttcatcagtttttcaagaatatttagtgtgaagtgattagcattctctttgataatcttaatgagttttgatgcacaggattgtttatgaattctttggttgctgaatttgcaagatttttatgttagttgctgaatctggaggttagatgaatttgagttctcttacagttgtttgcgaagcttgaaattttagaagagtaggtgttcagtttggtgaatttaagtggttttggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="39548" stop="41069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39848" g_stop="39945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39946" i_stop="40595" i_length="650">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40596" g_stop="40769" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="272" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E261249" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39848" e_stop="39945"/>
          <exon e_start="40596" e_stop="40769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGAGTAAGTGTTCCTCTACAACCCAACAAAGGAATGAAGCTTCTTTTATCAAAAACTGCACACTATCTTGGTGTTTTTTTTTTCTAGCTTCCCTCCATTTTCATCCATAAGAAAACCAATTATTGATGATAATAATCTCCAACTTTGAATGAGTTTTTTCAATCTATAAGACGAAAATGATAAAGTTGCTTTCTTGGTAATTACATGTTGGACACCTGGTAGTTGAGTATTCACTTTCTTTAATGATTGAATCGCCAAAAGGATTAGTCTTTTTGGTATCTTCTGTTATGTGGGGTTTTCCTTTTATGCAACTTCTTAAACATATTTGTTGTTTGTAGTGTTCCTGGTGTGCTCTATTTGATAATATGATGTATTTTGTGAGTTTCCTGTAGATGTTGTTATAATTACTATTCTTTTTGAAGTTTGTGCTGATTTTATACAATGCGATGCTGTTGACTGTTTGGTTGTGTTTCTTTCTTCTTTCTAATTGGTTGTTGCAGAGGGTAGATTAGCTTTTAACATTGCTTGTGGTGTAGTTTGGAAAGTTTTAGCTTTAAATCAAGATTTGTTTTTTCATTGTGGGGTTGCTGAATTTTGGTGAATGGAAGTGTTCTGCATTTTGGGGTTGCTGATATTTTCTCATTTCTTAGCAGGTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGT</genome_strand>
        <mrna_strand>TTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGATTTTTATGTTAGTTGCTGAATCTGGAGGTTAGATGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307838" ref_strand="+" ref_description="SGN-E307838 [cLEY-20-O12]">
      <seq>ttttttcatcagtttttcaagaatatttagtgtgaagtgattagcattctctttgataatcttaatgagttttgatgcacaggattgtttatgaattctttggttgctgaatttgcaagttttttatgttagttgctgaatctggagtttagttgaatttgagttctcttacagttgtttgcgaagcttgaaattttagaagagtaggtgttcagtttggtgaatttaagtggttttggagttcattattngaaatggatagtagtgggcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="39578" stop="41102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39878" g_stop="39945" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39946" i_stop="40595" i_length="650">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40596" g_stop="40802" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="275" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E307838" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39878" e_stop="39945"/>
          <exon e_start="40596" e_stop="40802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGAGTAAGTGTTCCTCTACAACCCAACAAAGGAATGAAGCTTCTTTTATCAAAAACTGCACACTATCTTGGTGTTTTTTTTTTCTAGCTTCCCTCCATTTTCATCCATAAGAAAACCAATTATTGATGATAATAATCTCCAACTTTGAATGAGTTTTTTCAATCTATAAGACGAAAATGATAAAGTTGCTTTCTTGGTAATTACATGTTGGACACCTGGTAGTTGAGTATTCACTTTCTTTAATGATTGAATCGCCAAAAGGATTAGTCTTTTTGGTATCTTCTGTTATGTGGGGTTTTCCTTTTATGCAACTTCTTAAACATATTTGTTGTTTGTAGTGTTCCTGGTGTGCTCTATTTGATAATATGATGTATTTTGTGAGTTTCCTGTAGATGTTGTTATAATTACTATTCTTTTTGAAGTTTGTGCTGATTTTATACAATGCGATGCTGTTGACTGTTTGGTTGTGTTTCTTTCTTCTTTCTAATTGGTTGTTGCAGAGGGTAGATTAGCTTTTAACATTGCTTGTGGTGTAGTTTGGAAAGTTTTAGCTTTAAATCAAGATTTGTTTTTTCATTGTGGGGTTGCTGAATTTTGGTGAATGGAAGTGTTCTGCATTTTGGGGTTGCTGATATTTTCTCATTTCTTAGCAGGTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAAT</genome_strand>
        <mrna_strand>TTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATTATTNGAAATGGATAGTAGTGGGCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355813" ref_strand="+" ref_description="SGN-E355813 [cLHT-12-F14]">
      <seq>gattcagaagtaccgaacaatgctgatgaacggtgtaatgctactttttccgatgaattagatggctggagaacaagttcttcatcacttaaggacattaggtcttcagatgagcatactgatgagtgtttgactccagaaatgaaatatgagagcacacatcggagttctagtcctccgcctcaagctcggagaggtttggagcactgcattactgcacctgtgactattggcggaggtcttttccctgaaggccaggatatggcattttcaagatctttgactgagaggagggttagtccaagacataatgtaatattggatagactntctgaacgtggaaagcaaaagctcattgcagagctggtaaagatccaaggggatggaacagtagaagttgaccttactaagagtacgcctgaaacttctgaattgttggagctgcgatctgttgaagaacccactcttactgtagacaggattatcacagattttaataagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="40521" stop="44376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40821" g_stop="41016" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41017" i_stop="42829" i_length="1813">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42830" g_stop="42978" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="345" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43917" g_stop="44076" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="505" r_length="160" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E355813" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40821" e_stop="41016"/>
          <exon e_start="42830" e_stop="42978"/>
          <exon e_start="43917" e_stop="44076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAGGTTAGTGCTTCATCTTCCTAAGCTTTTCTCTGTTGATAAATAATGAATTTGAGAAAACCTGCTACAGATTCTTCCTTGTGCATTTAGTTTAGTCTTCTCTCAATAAATTTAGAATAAGAGTCATGATCTTGGCAAAATGTTATATTGACAAGGATGTAAATGATAGTTAGAGGGGAGAAGTATGAGCGAGTGCCAAGTTACTGGGATAGTAGGACTTCAGAATGATCCTGTGGTTTTTTCTAAAAAAAAACTTTTTTGCTTTTTGTTTCATAATGCTGTTCACTAGGGTGTAATTTGTCTTTGTGGGACGAGTATACTAATAAGTATAATTCTTCTTTGATTGATAGTAAAACTATTTCTTGTGTTGTATCTTTATTCTATTTAATATAAAGTGAATCATGTATGTGTTTTTGTTCTATGTTGGATGACAAAATGGTCTAGGAAACTATCTTATTTATGATGTTAAGCATCATTGTTGTCCTCTGGCTAACAGTTTGATGAATGGAACTATTATTTTCTGTCCCACCAAACGGGCTGGTTCCTTTTCCTTTATTATTCTCTCTCATTACTACTTGTCATCTATGAAATCAATCTAGAAGGAGTTCAAATAATCCTATCTAGATCGACATGTAAGCTTAGTTGTGAATTTCAGACTATTAAGGCTTGTCCTATATTACTCAGCAAGCATTATAGAAAAGATGAGAGTAACTTTTCCTGTCATAGACCTGTATAAATAAATAAAAGTGTTCTGGCTCTAAGTTTTAAGTATATAACTGTGCCTCATCTTACAACTCTGTTCTAAAAGGAGGGTTCATTGACATTTTTCATCTCAAGGTCAAATTATGCCCTTGTCATCCTTTTCTGTCTCTGGAATTCCTTGAGCTAATACACCTCTGTACAGCTATCTGTCGAAAGTCTTGCTTCCTTATAATTGACCATCTGGTTGTTGATTTTGGTTCAAGTTACTTTAAGGGTCACATATTCTATGAAGAGACTGAACTTTTTTTGGGGCTGCAGTGTCTTGCTCGAGTTTCATGAGCTAAATTATATTCACCTGCTTGTTTGGTCCAAATGTGAAGAATTCTTTCCAGTGCTCTATATTCCAAGTTTCACCGCTACCCCTACAAAGGAAAACCAATGCATCAACGAAATTAATGACAAGCAAAACTAACATCATTTGTGGAGGACAGGGTTTGACAGACAACGATGTCAAACCAAGTTACTAAAAGATGGAACCTTGATTTAAAACCAAACATGAAAAATATCAAATACCCAAAAGTCTCCAGAGAACTAACTTTAACTGCTCCGTCTCCTTACAAGAGAAAAATGCTTTTGCTCACGGTTTCTTCTATGCTTCCCTCAAAGCTAAGGTACATTATAGACTTCCTCCTTTGTCACTTCTCACATCAGCTCCACTTTCCTCCCTCCAAAGCAAAAGCTATCTCCTGTATCACATTTAGGATATTCTGCCAGTATGCCGTATTGCTGACAATGATTTCATGTATAGAGTGGCAAAATACTCATGAATTAAACTTGGGAACCTCTTAGCATTGTCTTTCTGAAAATTTAGTAGTAAGAAAATATTGATTTGGTCTTCTATAAGCAATTGAAGCAAATCGTTGCTGCATATGATTCTTTGTTTTTTCTTTTCTTTGCTTTTTCTCTTCTCTTTTGCGTACTTGCTTCAGAAGGGCTTAGACATTTATATCTATGTTGATTGGATAAAGCTGACTATTGTGGTTTACTGGATTAGATGTATTTCTTTCTCATACAGGACTTTTGCATTTTTTTTTTTTTTTTGTTTAACTTGTAGGTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAGGTAATTTTGTTATTGACGTCTCCAGCTTTGAGATGCCTATTATCCGACAACCAATTGTGTAGTGCTTTGCTGTGAGATTCTATAATAGTCAACATGGCGTAGGAGTTGAATAGATTTACTAGTCTTGGTTACGATATGCATGTAAATGTGTCAAAAGTTGTTGCAATTTGTTAGAGTTTAATATTTTGTCCTTGACACTAGTTTTGGCTTGAATTTGTTTGATTTGATTGTAAACTTGAAGCATGGAAAGATCCTTTAATGTTGGAGAGTGATAAGGAGTAGAAAAGCTGATATGGGAAGTGCTAAGTGCATGAATAACGAGACTGCTTGTTATCTGAATAAATATGATTTACCTGAACCAATAAAACTTAAAAGAATCCTAGAATGCTGAGCATTATTTTTTCAAATGATGCTTAGACCATGTGAAGCTGGCAATTTGTATTGACCAAGTACTTATTTAGACTTACTGATACAAAATTTACTTTGACCATTTGGTTTTTGAGCTATTTTTTTGCTTTTAACTGATGGAGTTGATATGTATGTTGTAGGGCTCCGCTGAGTCAAGTTGCTATTTAATAAGTGGCTGAAACAAAACCACCCTCTTTAACAAAGTCAATTTTTTCTGCACATAATCACATGTATCCGGCCTGAATCACCGCTTCATACATTAGGTTGTCCATGCCTGTATATGTAAAAATAGCAGCTAATCAAACAGGTTAAGAATTCTTGCTATTTGCCTATGTAAGTATGGATTATGGAGACCCAGGACTGCCCCTCTGCAGCGTCTGAAAGAACCACCACAAATTACTTACATGTGTTTTTTTACTTTATCCATCTGGAAAATGATATACCTTTTCATTTTCTTGCCATTAAGTTGCTGAATCCTTCTTATTCACTTACCATTTCCTCATATTTCCTTCTGTTCTTAATGTCACCAGCAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAG</genome_strand>
        <mrna_strand>GATTCAGAAGTACCGAACAATGCTGATGAACGGTGTAATGCTACTTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATATGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTNTCTGAACGTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCTCATTGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAAGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267315" ref_strand="+" ref_description="SGN-E267315 [cLEI-17-I3]">
      <seq>tggagcactgcattactgcacctgtgactattggcggaggtcttttccctgaaggccaggatatggcattttcaagatctttgactgagaggagggttagtccaagacataatgtaatattggatagactttctgaacgtggaaagcaaaagctcatcgcagagctggtaaagatccaaggggatggaacagtagaggttgaccttactaagagtacgcctgaaacttctgaattgttggagctgcgatctgttgaagaacccactcttactgtagacaggattatcacagattttaataagtcagttccaaagttgaaaatcgtggtgcttattgttggaaccaggggagatgttcaaccatttttggctatggccaagagacttcaggcgtttggtcatcatgtcaggctggcaactcattctaacttccgtgattntgtcaaatcaggaggcatagactactacccattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42533" stop="45382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42833" g_stop="42978" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43917" g_stop="44159" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="389" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44160" i_stop="44996" i_length="837">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44997" g_stop="45082" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="475" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E267315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42833" e_stop="42978"/>
          <exon e_start="43917" e_stop="44159"/>
          <exon e_start="44997" e_stop="45082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAGGTAATTTTGTTATTGACGTCTCCAGCTTTGAGATGCCTATTATCCGACAACCAATTGTGTAGTGCTTTGCTGTGAGATTCTATAATAGTCAACATGGCGTAGGAGTTGAATAGATTTACTAGTCTTGGTTACGATATGCATGTAAATGTGTCAAAAGTTGTTGCAATTTGTTAGAGTTTAATATTTTGTCCTTGACACTAGTTTTGGCTTGAATTTGTTTGATTTGATTGTAAACTTGAAGCATGGAAAGATCCTTTAATGTTGGAGAGTGATAAGGAGTAGAAAAGCTGATATGGGAAGTGCTAAGTGCATGAATAACGAGACTGCTTGTTATCTGAATAAATATGATTTACCTGAACCAATAAAACTTAAAAGAATCCTAGAATGCTGAGCATTATTTTTTCAAATGATGCTTAGACCATGTGAAGCTGGCAATTTGTATTGACCAAGTACTTATTTAGACTTACTGATACAAAATTTACTTTGACCATTTGGTTTTTGAGCTATTTTTTTGCTTTTAACTGATGGAGTTGATATGTATGTTGTAGGGCTCCGCTGAGTCAAGTTGCTATTTAATAAGTGGCTGAAACAAAACCACCCTCTTTAACAAAGTCAATTTTTTCTGCACATAATCACATGTATCCGGCCTGAATCACCGCTTCATACATTAGGTTGTCCATGCCTGTATATGTAAAAATAGCAGCTAATCAAACAGGTTAAGAATTCTTGCTATTTGCCTATGTAAGTATGGATTATGGAGACCCAGGACTGCCCCTCTGCAGCGTCTGAAAGAACCACCACAAATTACTTACATGTGTTTTTTTACTTTATCCATCTGGAAAATGATATACCTTTTCATTTTCTTGCCATTAAGTTGCTGAATCCTTCTTATTCACTTACCATTTCCTCATATTTCCTTCTGTTCTTAATGTCACCAGCAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAGGCATGTTGGGAGTTCTAAATCACCATGTTTATAGCTGTACTGGTCATACATGTTCTATATCGTTTTCTTCTTAACCATCTGTGCTTGCCTTTATTATTATATCATTGCATTCTATGTTTTTCAGCATCCTTTACAGAATAACCCAAATTTCGGCTTTGAATGACAATTCGTTGGAGAGGTCTGTTAGATGGACTTCTAAGTTCTATTTTACTAGACTTAGTTTCTCCACTTTTCAAGTCTTCTTAGTCACCAACTTTTAAAATTGATTGTTGAGATGCTGTAAGGTAAAAGGATTAGATTGTGTCCCTTGGACCTGGGTAAACCAATTGAGATTTCATTTGAGAATATATTGACGGAGAGAATTTTTAGAGGTGAATTTGGACCTATATGGTTGAAGCAAGTATCAAAAACAAAGGTCACTTGGACCTTGCAATTACTTTGCGCAAGGAAAATTTTGTCTGCTTCAGAGCTGAGGTCTTTTGCTGCTTGACTGGCAAAACATTCTTAATATGCTCTTTACAGTGTGGGTACCATTGGATTTAATTTCTTTTCCTGTCTAAGGTTGGTTTAGCTTTATTTCTTGCTGTTGCCTCTTCTGGAGCACGATTATTTATTTGCCTATTATTTAATTTTCTCATCATTTTTGTGGCCAATATTGGACATTCATGTGAAATAATTGATTATATTTCAACTATAGATTTTGTGTTTCCATATTTCGTGTAGTAGAATTTTGTTGATGTTTGTGCACCTTAATATCTTTGTATTTTGGTTGAGAAAATTGTTCATTTGTAGAGTAAATCGTTCGTTCCTTTTCTAATCAGTTTTATGCATTGACAGGCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGG</genome_strand>
        <mrna_strand>TGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTNTGTCAAATCAGGAGGCATAGACTACTACCCATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557837" ref_strand="+" ref_description="SGN-E557837 [16698]">
      <seq>gcattttcaagatctttgactgagaggagggttagtccaaggcataatctaatattggatagactttctgaacgtggaaagcaaaagctcattgtggatctggtaaagattcaaggggatggaacagtagaggttgaccttactaagagtacgcctgaaacttctgaattgttggagctgcgatctgttgaagaacccactcttactgtagacaggattatcacaggttttaataagtcagttccaaagttgaaaatcgtggtgcttattgttggaaccaggggagatgttcaaccatttttggctatggccaagagacttcaggcgtttggtcatcatgtcaggctggcaactcattctaacttccacgattttgtcaaatcaggaggcatagacttctacccattgggtggtgatcctcgggtattggcaggatatatggccaggaacaaaggtctcattccttctggaccaggagagatatctgtacaacgaaagcagctaaaggcaataattgaatctcttcttccggcttgcactgaaccagatattgaaactggtgaacctttcagagcacaagcaattattgcaaatcctcctgcttatggacatgcacacgttgctgaagctcttggggtacccctccacatcttcttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42598" stop="47841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42898" g_stop="42978" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938">
            <donor d_prob="0.657" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43917" g_stop="44159" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="324" r_length="243" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44160" i_stop="44996" i_length="837">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44997" g_stop="45108" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="436" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45109" i_stop="46136" i_length="1028">
            <donor d_prob="0.821" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46137" g_stop="46307" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="607" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46308" i_stop="47488" i_length="1181">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47489" g_stop="47541" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="660" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E557837" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42898" e_stop="42978"/>
          <exon e_start="43917" e_stop="44159"/>
          <exon e_start="44997" e_stop="45108"/>
          <exon e_start="46137" e_stop="46307"/>
          <exon e_start="47489" e_stop="47541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAGGTAATTTTGTTATTGACGTCTCCAGCTTTGAGATGCCTATTATCCGACAACCAATTGTGTAGTGCTTTGCTGTGAGATTCTATAATAGTCAACATGGCGTAGGAGTTGAATAGATTTACTAGTCTTGGTTACGATATGCATGTAAATGTGTCAAAAGTTGTTGCAATTTGTTAGAGTTTAATATTTTGTCCTTGACACTAGTTTTGGCTTGAATTTGTTTGATTTGATTGTAAACTTGAAGCATGGAAAGATCCTTTAATGTTGGAGAGTGATAAGGAGTAGAAAAGCTGATATGGGAAGTGCTAAGTGCATGAATAACGAGACTGCTTGTTATCTGAATAAATATGATTTACCTGAACCAATAAAACTTAAAAGAATCCTAGAATGCTGAGCATTATTTTTTCAAATGATGCTTAGACCATGTGAAGCTGGCAATTTGTATTGACCAAGTACTTATTTAGACTTACTGATACAAAATTTACTTTGACCATTTGGTTTTTGAGCTATTTTTTTGCTTTTAACTGATGGAGTTGATATGTATGTTGTAGGGCTCCGCTGAGTCAAGTTGCTATTTAATAAGTGGCTGAAACAAAACCACCCTCTTTAACAAAGTCAATTTTTTCTGCACATAATCACATGTATCCGGCCTGAATCACCGCTTCATACATTAGGTTGTCCATGCCTGTATATGTAAAAATAGCAGCTAATCAAACAGGTTAAGAATTCTTGCTATTTGCCTATGTAAGTATGGATTATGGAGACCCAGGACTGCCCCTCTGCAGCGTCTGAAAGAACCACCACAAATTACTTACATGTGTTTTTTTACTTTATCCATCTGGAAAATGATATACCTTTTCATTTTCTTGCCATTAAGTTGCTGAATCCTTCTTATTCACTTACCATTTCCTCATATTTCCTTCTGTTCTTAATGTCACCAGCAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAGGCATGTTGGGAGTTCTAAATCACCATGTTTATAGCTGTACTGGTCATACATGTTCTATATCGTTTTCTTCTTAACCATCTGTGCTTGCCTTTATTATTATATCATTGCATTCTATGTTTTTCAGCATCCTTTACAGAATAACCCAAATTTCGGCTTTGAATGACAATTCGTTGGAGAGGTCTGTTAGATGGACTTCTAAGTTCTATTTTACTAGACTTAGTTTCTCCACTTTTCAAGTCTTCTTAGTCACCAACTTTTAAAATTGATTGTTGAGATGCTGTAAGGTAAAAGGATTAGATTGTGTCCCTTGGACCTGGGTAAACCAATTGAGATTTCATTTGAGAATATATTGACGGAGAGAATTTTTAGAGGTGAATTTGGACCTATATGGTTGAAGCAAGTATCAAAAACAAAGGTCACTTGGACCTTGCAATTACTTTGCGCAAGGAAAATTTTGTCTGCTTCAGAGCTGAGGTCTTTTGCTGCTTGACTGGCAAAACATTCTTAATATGCTCTTTACAGTGTGGGTACCATTGGATTTAATTTCTTTTCCTGTCTAAGGTTGGTTTAGCTTTATTTCTTGCTGTTGCCTCTTCTGGAGCACGATTATTTATTTGCCTATTATTTAATTTTCTCATCATTTTTGTGGCCAATATTGGACATTCATGTGAAATAATTGATTATATTTCAACTATAGATTTTGTGTTTCCATATTTCGTGTAGTAGAATTTTGTTGATGTTTGTGCACCTTAATATCTTTGTATTTTGGTTGAGAAAATTGTTCATTTGTAGAGTAAATCGTTCGTTCCTTTTCTAATCAGTTTTATGCATTGACAGGCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGATGTAAGAGGTCTTTGGCATGCTTCTTCGTTTTTCTCGTTCTTGTTTTTGTCTATGTTATGAGTACTCTGCTATGGGTATGTATTAGCCCTTTCTTTCTGGGTGGGTAAGTATCTGGTATGAGTAAACATAGTTTTCTGCAATTTTGGGGTGTGCTTCAAAGAATCCACATAAAGTTCTCACATGTGTTCCACACACGCCCTCCCCCCACATCCCTTGCACGCCCAAGACTAGACGAAGCATGGATATCATAACATAGTGCCCTACATTAGGTAACACAATAATGATGATGGGAGTGGCTCTAATTAGTGTTATCAAAAGCAAAAAGCGCAAAAAATCTCTAAGATCTGTTGGGCATTTAAGCGCAACTAACGTGTGGGCTTTAATGAAAAAAAGAGCAAAGGGAGAAAAAATGCAAAGCTATGTTTAGTCCAAGATTAATAATTATAAGCACGAAGGAATGACAAATATATGAAGAAAGAAACTGAAAAAAATAATATGATAAAGTAAAATATCAATTTTTTAGTGCCGCCTCTTCTAAAGAGGCTCATTGGCAAGAAAATGTATGTCATATAACCTTGACGAGGAAACAAAATCGCACCTTAAATAAGTCGAAACACTTTTTGAGCCTCGCATCAGGGCGCCTTTGACAACTCTGGCGCTAATACCAAGCTAAGAAGATGGGTTTAGGCCTAAGTCAATCTCAAAAGTTGGTTCATGCGGTAAGGGTTGCCCAAATCACTAGGAGACTATAGCCACACTTTCAACCAATGGTGAACACTAACATAATCCTATGAGCAATCGTGGTAATATCAAGCTTCTACTTTTTTCCTTTTAGTTAACTTACGCACAGTTTGAAAATTTTTCTTAAATTTTTGGGAAGTTTTCAACATACTTAACAGTCAAATTTGTACTGGAATCTAGTATGAAATAAGTGGCTCATCACATACCTGTTCAAGTAGTAATATGGAATTCCTGTTTGCTGATATCATTTAATATGGATTAAGTTCGTATGTTCTGTGGAATTGCAGATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATGGTGAGTTCGAAAATAATCTCTATACTCACCACTCATTTCACCTTTTTGATATCTGGACATCTAATTCATGTTTGGTCCATGATTTATAATATCACATGGAGTTGTACATCACTGCTAGTTCTCCAAAAGATACATTTCTGTCTTCTCTTGTTTTTCTTTTTGGGGTGGGGGTGGCGGGTGGTGGTGGTCATATTTTGCCATCATAGAGAACATATGTTTGACTAAATTAGAAAGATATATGTGAGATACTATAAGTAGAGGAGCTACTATATTCTGAGATGGTCTCTTAGTCGCATTGTGGAATTTATCTTAGAAAGGATTAACATGAAGTCAACAAATATGAATTAAATGAACATATTAGTGTGTATGAAGTGAGGATGGGTCACTATGACCTCCGGACACAAGAATCTCAAAGATAACCTTGAAATCATACTCAGGTTAGAATCGTTTGAAATGTCTTTGGCCAAATAACTCTGTTTATTTACTATGAGTTTAATCTCATTTGACTCTTCTAATGTGGAGACCAGAAGCTATCTAGTTTTGACCTTGGGAGGAGTTAAGTCTGAAAAGTTACTCCACCGCCTTAGCTGGGTTTGACTGTTCATATGTTACATATTTAATCTCACACTATCTTCACAGTGCTCCTCTGCTTCTTTTCAATTAGAGTAGACCTATGTCAAGAAGTTGAGTTATTAGCCTATAAAGAAATCCACCTGATTGTATTTTCTGTATCAAATTCACGAGCAGTGTTAATCTGCTTCGAATAAGTACAAGCCCTTCCAAACTGAAAAACTTATTTTGGGAGGTCATTAGCTGAATCTATGGAGGTGTGTATTCTGCACAGCTTTGGCAAGTTGCAAACCGGTTTGGGTTTACTAAACAAAGAGCTTAGAAGGAAGAAGACTTAATCTTGAGCTTGTGCTCTGTAAATAAATGTCGAATAAAATATAAACTGCTTTATATGGTTTTCCTCAATGGTCCCCAAAACAATATTCATTTTTATGCTTTCCGGGACTTTATAGACTCCTTGTATCATAGATAATTCTAGTCCATCAATTGTACAGATATCAGCAACCTCTTGCTGCTATTTTTGTTAACAACATTTATCAGGATTAGTCAACACAACAGGATGCGATTTAGTCCAAGTCAACTTATAAGCATTGTTTTATTTTTTTGGACAGGACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACA</genome_strand>
        <mrna_strand>GCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGGCATAATCTAATATTGGATAGACTTTCTGAACGTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCTCATTGTGGATCTGGTAAAGATTCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGGTTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCACGATTTTGTCAAATCAGGAGGCATAGACTTCTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCAATAATTGAATCTCTTCTTCCGGCTTGCACTGAACCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCAATTATTGCAAATCCTCCTGCTTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214264" ref_strand="+" ref_description="SGN-E214264 [cLEC-77-J19]">
      <seq>cttcaggcgtttggtcatcatgtcaggctggcaactcattctaacttccgtgattttgtcaaatcaggaggcatagactactacccattgggtggtgatcctcgggtattggcaggatatatggccaggaacaaaggtctcattccttctggaccaggagagatatctgtacaacgaaagcagctaaaggctataattgaatctcttcttccggcttgcactgagccagatattgaaactggtgaacctttcagagcacaagcgattattgcaaatcctcctgcttatggacatgcacacgttgctgaagctcttggggtacccctccacatcttcttcacaatgccctggacgccaacttctgaatttcctcacccgatggctcgtgtacctcaacctgctgcgtattggctttcctacatactcgtggatttacttgtctggtggggcataagaggctacatcaacgattttaggaaaaagaagttaaaccttcctcctatcgcctacttcagtacataccacggatcaatttctcacttcccaactggctacatgtggagtccacatgttgtgccaaagcctaaagattggggctctttggttgatattgttggctattgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="44694" stop="49356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44991" g_stop="45108" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45109" i_stop="46136" i_length="1028">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46137" g_stop="46307" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="289" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46308" i_stop="47488" i_length="1181">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47489" g_stop="47552" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="353" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47553" i_stop="48382" i_length="830">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48383" g_stop="48440" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="411" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48441" i_stop="48530" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48531" g_stop="48708" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="589" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48709" i_stop="49017" i_length="309">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49018" g_stop="49056" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="628" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E214264" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44991" e_stop="45108"/>
          <exon e_start="46137" e_stop="46307"/>
          <exon e_start="47489" e_stop="47552"/>
          <exon e_start="48383" e_stop="48440"/>
          <exon e_start="48531" e_stop="48708"/>
          <exon e_start="49018" e_stop="49056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGGCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGATGTAAGAGGTCTTTGGCATGCTTCTTCGTTTTTCTCGTTCTTGTTTTTGTCTATGTTATGAGTACTCTGCTATGGGTATGTATTAGCCCTTTCTTTCTGGGTGGGTAAGTATCTGGTATGAGTAAACATAGTTTTCTGCAATTTTGGGGTGTGCTTCAAAGAATCCACATAAAGTTCTCACATGTGTTCCACACACGCCCTCCCCCCACATCCCTTGCACGCCCAAGACTAGACGAAGCATGGATATCATAACATAGTGCCCTACATTAGGTAACACAATAATGATGATGGGAGTGGCTCTAATTAGTGTTATCAAAAGCAAAAAGCGCAAAAAATCTCTAAGATCTGTTGGGCATTTAAGCGCAACTAACGTGTGGGCTTTAATGAAAAAAAGAGCAAAGGGAGAAAAAATGCAAAGCTATGTTTAGTCCAAGATTAATAATTATAAGCACGAAGGAATGACAAATATATGAAGAAAGAAACTGAAAAAAATAATATGATAAAGTAAAATATCAATTTTTTAGTGCCGCCTCTTCTAAAGAGGCTCATTGGCAAGAAAATGTATGTCATATAACCTTGACGAGGAAACAAAATCGCACCTTAAATAAGTCGAAACACTTTTTGAGCCTCGCATCAGGGCGCCTTTGACAACTCTGGCGCTAATACCAAGCTAAGAAGATGGGTTTAGGCCTAAGTCAATCTCAAAAGTTGGTTCATGCGGTAAGGGTTGCCCAAATCACTAGGAGACTATAGCCACACTTTCAACCAATGGTGAACACTAACATAATCCTATGAGCAATCGTGGTAATATCAAGCTTCTACTTTTTTCCTTTTAGTTAACTTACGCACAGTTTGAAAATTTTTCTTAAATTTTTGGGAAGTTTTCAACATACTTAACAGTCAAATTTGTACTGGAATCTAGTATGAAATAAGTGGCTCATCACATACCTGTTCAAGTAGTAATATGGAATTCCTGTTTGCTGATATCATTTAATATGGATTAAGTTCGTATGTTCTGTGGAATTGCAGATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATGGTGAGTTCGAAAATAATCTCTATACTCACCACTCATTTCACCTTTTTGATATCTGGACATCTAATTCATGTTTGGTCCATGATTTATAATATCACATGGAGTTGTACATCACTGCTAGTTCTCCAAAAGATACATTTCTGTCTTCTCTTGTTTTTCTTTTTGGGGTGGGGGTGGCGGGTGGTGGTGGTCATATTTTGCCATCATAGAGAACATATGTTTGACTAAATTAGAAAGATATATGTGAGATACTATAAGTAGAGGAGCTACTATATTCTGAGATGGTCTCTTAGTCGCATTGTGGAATTTATCTTAGAAAGGATTAACATGAAGTCAACAAATATGAATTAAATGAACATATTAGTGTGTATGAAGTGAGGATGGGTCACTATGACCTCCGGACACAAGAATCTCAAAGATAACCTTGAAATCATACTCAGGTTAGAATCGTTTGAAATGTCTTTGGCCAAATAACTCTGTTTATTTACTATGAGTTTAATCTCATTTGACTCTTCTAATGTGGAGACCAGAAGCTATCTAGTTTTGACCTTGGGAGGAGTTAAGTCTGAAAAGTTACTCCACCGCCTTAGCTGGGTTTGACTGTTCATATGTTACATATTTAATCTCACACTATCTTCACAGTGCTCCTCTGCTTCTTTTCAATTAGAGTAGACCTATGTCAAGAAGTTGAGTTATTAGCCTATAAAGAAATCCACCTGATTGTATTTTCTGTATCAAATTCACGAGCAGTGTTAATCTGCTTCGAATAAGTACAAGCCCTTCCAAACTGAAAAACTTATTTTGGGAGGTCATTAGCTGAATCTATGGAGGTGTGTATTCTGCACAGCTTTGGCAAGTTGCAAACCGGTTTGGGTTTACTAAACAAAGAGCTTAGAAGGAAGAAGACTTAATCTTGAGCTTGTGCTCTGTAAATAAATGTCGAATAAAATATAAACTGCTTTATATGGTTTTCCTCAATGGTCCCCAAAACAATATTCATTTTTATGCTTTCCGGGACTTTATAGACTCCTTGTATCATAGATAATTCTAGTCCATCAATTGTACAGATATCAGCAACCTCTTGCTGCTATTTTTGTTAACAACATTTATCAGGATTAGTCAACACAACAGGATGCGATTTAGTCCAAGTCAACTTATAAGCATTGTTTTATTTTTTTGGACAGGACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACAATGCCCTGGACGTAAGCTCTGATTGACACTTTAACTTTATTTTATTGGATATTTCGTATTAACAATATGACAAGTGGATGCACCTGCAATTGCTGTCTTTGTCAATATGCGACCTTGTAAAGTCCATTCCTCTTATAAAACATTGATGAAACAAAATACTGCTATCTGATTTCTATTTTCTTTTCTACAAAAGTTTCCTCTTTGAGAAAAGCCAATTTGTAATAGGTGGTTGTTCTTCACTATGTGAATGTTTTTTAGATTTGATATTGACTAGACCATTATAAGGTGGCATTTGATACCTTACTCGGCCTTGTGGTTAAGATCAAGTGTAGTTTCTGTTCTCACCAGCTTTAACATCTGATACATGGACACTGGCCCACATTATATCAACCATTGGCGTTTCATTTAAAAAATTGAGAAACAGTTTTTGCAAAATTCTTCTAGTTACAACAACCATACGAAAGAAACGTATGAGTTTTGCTACTTTATTTAGATGGAGTTTTGGTTGAAACACAATTTTTGAAATTCCTCAAACTTTTCTTAGGTGGAGCTGCATCGGACACAATTTTTGCTGAAACTTGAAAAACTTTTTGCAGAAACTGCTATTTAATATTTCAATTGAACGCCTTAGTCTGTGACATACAAAGATTAGATGCAAGTGCCCAATTTCTGGAGTAGTTGGTTCTTCTGAATTAGGAAGTTTTATAGATCAATTGGAAGAACTATTATGCACATAGGATATTATGCGAGTCAGTTGCTGAGTTCAGTGTCATTCTTCATTAAATTCTCCCATTTAATATTTTCAACAAGGTACCTTCTCATAGACTTTGTTAATAGACAGGCCAACTTCTGAATTTCCTCACCCGATGGCTCGTGTACCTCAACCTGCTGCGTATTGGGTATGTTATCAGTTTCTTCTTTTGAAAAATATTTTTCCAGTAATTCTTCTGATTCCTGTTAAAACTCTATTTGTCTTCTGCACATTTCAGCTTTCCTACATACTCGTGGATTTACTTGTCTGGTGGGGCATAAGAGGCTACATCAACGATTTTAGGAAAAAGAAGTTAAACCTTCCTCCTATCGCCTACTTCAGTACATACCACGGATCAATTTCTCACTTCCCAACTGGCTACATGTGGAGTCCACATGTTGTGCCAAAGCCTAAAGGTATATGTCAGCTCCTCAATGGTATCTGGATGCTTGTTTTCGTCGTATTGGTCATTCCACTTCTTTTGTTGAAGCAAAACTAATGATTTGTAAATCTCAAAATGAACGGATCAGTTTCTTGTGGAGTATTTCTGTGCTAGTCTCTCTTTCTTCATTCCCATTAATCCCCTTCCCCATCCCTGAATTCATGTAAAGATCTTTTCTTCTTTTTCTAGCTCTACTTCACCCATTGGCTTAGTAATGATGTGTGCTCATACAATCAGTCCACTTGATCTATCATAAAAATATTGAAGCATTCGTTTTTTGCAGATTGGGGCTCTTTGGTTGATATTGTTGGCTATTGTTTCT</genome_strand>
        <mrna_strand>CTTCAGGCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACAATGCCCTGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACTTCTGAATTTCCTCACCCGATGGCTCGTGTACCTCAACCTGCTGCGTATTGG..........................................................................................CTTTCCTACATACTCGTGGATTTACTTGTCTGGTGGGGCATAAGAGGCTACATCAACGATTTTAGGAAAAAGAAGTTAAACCTTCCTCCTATCGCCTACTTCAGTACATACCACGGATCAATTTCTCACTTCCCAACTGGCTACATGTGGAGTCCACATGTTGTGCCAAAGCCTAAAG.....................................................................................................................................................................................................................................................................................................................ATTGGGGCTCTTTGGTTGATATTGTTGGCTATTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595549" ref_strand="+" ref_description="SGN-E595549 [38825]">
      <seq>ctttggttgatattgttggctattgtttcttaaaccttgggagtaactaccaacctcctgaagaatttatcaagtggatccaaaatgggcctaaacctgtatatattgggtttgggagcatgatataattttggaggcactaaggaatactgggcagaggggaattgtagaccgaggttggggagatcttggtacttttcaagatattcctgaagatgtttttcttgttgcggagtaccctcatgattggctttttcctcaatgcgcagctgttgttcatcacggtggagctggaaccacagccgcgggactacgtgctgggtgtccaacaactataataccattcttcggtgatcaattcttctggggcgatagaattcatcaaaagggactgggacctgctccaattcctattgaacagcttagtgtacaaggactatctgatgctataacatttatgctccagcctgatgtgaaatcgcgagtaatggaactagctgtattattagagaatgaagatggtgttgcaggtgcagttgatgctttccaccggcatttgccttcagaaatgccattgccaaccccgtcttatcatgaggatatcgatggtccaaatccgttacagtggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttagctcagatactgcattcatagttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="48727" stop="51584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49027" g_stop="49148" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49149" i_stop="49591" i_length="443">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49592" g_stop="49666" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="197" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49667" i_stop="50293" i_length="627">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50294" g_stop="50370" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="274" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50371" i_stop="50609" i_length="239">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50610" g_stop="50657" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="322" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50658" i_stop="50788" i_length="131">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.469" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50789" g_stop="50938" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="472" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51058" g_stop="51274" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="686" r_length="214" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E595549" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49027" e_stop="49148"/>
          <exon e_start="49592" e_stop="49666"/>
          <exon e_start="50294" e_stop="50370"/>
          <exon e_start="50610" e_stop="50657"/>
          <exon e_start="50789" e_stop="50938"/>
          <exon e_start="51058" e_stop="51274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTTGATATTGTTGGCTATTGTTTCTTAAACCTTGGGAGAAACTACCAACCTCCTGAAGAATTTATCAAGTGGATCCAAAATGGGCCTAAACCTGTATATATTGGGTTTGGGAGCATGGTAAGGTTTTCTAATATAAACTCCCAGAAGTCTTAGAAGTATCAGATGATCCTTTATCCCACTCAGCCACTCTTGCAAGATATATCGAGTCTGATGTCTTATAATTTAAAAGCAACTTATGACTAGGTTTACTACTGTAGGTGGAATTCTTAGTTTACTACCGACAGTCTAGTGACAGTATCCGTTTCTGAATGATTTAATTCGTACTTGATAAACTTGCAATAGTGGATGTAAACCAGCTTCAATCAATCTAACTGCATTTTCGTCTCACACAATTTTAATTGTTAAATAGATCTCTAAGGTGCCTGTGCTCAAGATCTTAGCAGTCTGATCTAGAATAATCACTTTGGTCTCCTACTTCACTTTTGTTTTTGAAGATATCCAACTTGTTCATTCCTTTTGTTCTTTTTTTTAGCCTCTTGAAGATACCATTAAAACTACAGATATAATTTTGGAGGCACTAAGGAATACTGGGCAGAGGGGAATTCTTGACCGAGGTTGGGGAGATCTTGGTACTTGTAAGTTCTCTCATGATTTGCATTTCTTTTTTCAACTTATTACATTCTGCATGTTTCTGACTGACCATAAAATTGATCATATATAGGTTGCAAAATAAAGCTAATTTTTTTGAAGAAACAAAAAGATATAGGCACAACTCTCGTAATTTATTGCATATAGCATATTGAAGCTCTAGTGCTCTACTGTGCGTTCACTGGAAGGGTTAAGACCTGGATGAACCTCAAAAACACCACAAGAAGAACCTTGGAGGGGATGGTTTATTAAATAAAATTCTCTTTTAAGTTATTTAGCTGACATAATAAGTCTCCCCCTTTGACCTTCCTCTAACCCCGAACATACAACCGAAAAACCAGTTTCCAAGGCCAATTACTTGCTTGACAAAATATGAGGCCTATGATGGTGGTATGGAGTTGGGGTTACAACAACATAAACATTAAGTGGATAGATCAAGAGAACAGTTTGTTTGTCATTATATTACTGGATGGACGCCACATACACAAGTGCACTTATGTAGTATTGGTAAATAATGTGGATATTTCCGTTCATTTGTGATTGGATTGCATGTGAGAATATTCTAACACCAAGAAACATCTTTTCTTGTTTTTTTACCTCTTATTCTGTACCAGTTCAAGAGATTCCTGAAGATGTTTTTCTTGTTGCGGAGTACCCTCATGATTGGCTTTTTCCTCAATGCGCAGCTGTTGTGAGTACTATTGCTTTACAAATTACTCCTACCTACTCATGTTATATATCTTTTGAATGCTTTTCTGGATAGCAAACTGGGAGATGGGATCGGTTCTGATAAACTGATGGTCAATGGTTGGTTATTAGGGATTTTACAAACTCTAGTATAACTGACCTTCTAAACTCCAATCTTCTCGATATCTGGATATTGAAAAATATTTATTTTCTGATGTGCTCGTGGGAAATACCTGCTTGCAGGTTCATCACGGTGGTGCTGGAACCACAGCTGCGGGACTGCGTGCTGGGGTAATGTTCTTTCTCAATCTCATATCAGTAGTATTATTCTAAAGCAATCATCTTTTGCTGGATCTTTTGCCCTTTGAGTCATATAGAAAGATCAGATGGTCTTATGCAATGTCTGCAATTTTTTAATCCAGTGTCCAACAACTATAGTACCATTCTTCGGTGATCAATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACT</genome_strand>
        <mrna_strand>CTTTGGTTGATATTGTTGGCTATTGTTTCTTAAACCTTGGGAGTAACTACCAACCTCCTGAAGAATTTATCAAGTGGATCCAAAATGGGCCTAAACCTGTATATATTGGGTTTGGGAGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATTTTGGAGGCACTAAGGAATACTGGGCAGAGGGGAATTGTAGACCGAGGTTGGGGAGATCTTGGTACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGATATTCCTGAAGATGTTTTTCTTGTTGCGGAGTACCCTCATGATTGGCTTTTTCCTCAATGCGCAGCTGTT...............................................................................................................................................................................................................................................GTTCATCACGGTGGAGCTGGAACCACAGCCGCGGGACTACGTGCTGGG...................................................................................................................................TGTCCAACAACTATAATACCATTCTTCGGTGATCAATTCTTCTGGGGCGATAGAATTCATCAAAAGGGACTGGGACCTGCTCCAATTCCTATTGAACAGCTTAGTGTACAAGGACTATCTGATGCTATAACATTTATGCTCCAGCCTGAT.......................................................................................................................GTGAAATCGCGAGTAATGGAACTAGCTGTATTATTAGAGAATGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCACCGGCATTTGCCTTCAGAAATGCCATTGCCAA-CCC--CGTCTTATCATGAGGATATCGATGGTCCAAATCCGTTACAGTGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTAGCTCAGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250877" ref_strand="-" ref_description="SGN-E250877 [cLEG-13-A17]">
      <seq>tcggtgatcaattcttttggggcgatagaattcatgaaaagggactgggaccggctccaattcctattgacaagcttagtgtagaaggactctctgatgctataacatttatgcttcagcctgatgtgaaatcccgagtaatggaactagctgtattattagagaacgaagatggtgttgcaggtgcagttgatgctttccatcggcatttgccttcagaaatgccattgccaaccccaaccccggcttatgaggatatcgatggtccaaatccgttacaatggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttggctctgaaactgcatttatagagttgcatagttgtgttatttcatattttttttttgattaattggttgtattggttcatcacatcattctttcttcttggcttgtaaaataagttacatggcaaaactttatagacatatttattgctattattctcatagtgattccgtaacccccccaagctcttgttcattttagtgttcaatgatcgctttgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="50514" stop="51783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50814" g_stop="50938" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51058" g_stop="51483" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="552" r_length="427" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E250877" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250877" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50814" e_stop="50938"/>
          <exon e_start="51058" e_stop="51483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTGATCAATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATA-TTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGA</genome_strand>
        <mrna_strand>TCGGTGATCAATTCTTTTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCGGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT.......................................................................................................................GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTCTCATAGTGATTCCGTAACCCCCCCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374160" ref_strand="+" ref_description="SGN-E374160 [TUS-33-P1](-)">
      <seq>attcttctggggcgatagaattcatgaaaagggactgggacctgctccaattcctattgacaagcttagtgtagaaggactctctgatgctataacatttatgcttcagcctgatgtgaaatcccgagtaatggaactagctgtattattagagaacgaagatggtgttgcaggtgcagttgatgctttccatcggcatttgccttcagaaatgccattgccaaccccaaccccggcttatgaggatatcgatggtccaaatccgttacaatggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttggctctgaaactgcatttatagagttgcatagttgtgttatttcatatttttttttgattaattggttgtattggttcatcacatcattctttcttcttggcttgtaaaataagttacatggcaaaactttatagacatatttattgctattattttcatagtgattttgtaacaacaccaagctcttgttcattttagtgttcaatgatcgctttgcagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="50524" stop="51789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50824" g_stop="50938" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51058" g_stop="51490" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="548" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E374160" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50824" e_stop="50938"/>
          <exon e_start="51058" e_stop="51490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGACAGAG</genome_strand>
        <mrna_strand>ATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT.......................................................................................................................GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345556" ref_strand="+" ref_description="SGN-E345556 [cTOF-18-B24]">
      <seq>ttcttctggggcgatagaattcatgaaaagggactgggacctgctccaattcctattgacaagcttagtgtagaaggactctctgatgctataacatttatgcttcagcctgatgtgaaatcccgagtaatggaactagctgtattattagagaacgaagatggtgttgcaggtgcagttgatgctttccatcggcatttgccttcagaaatgccattgccaaccccaaccccggcttatgaggatatcgatggtccaaatccgttacaatggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttggctctgaaactgcatttatagagttgcatagttgtgttatttcatatttttttttgattaattggttgtattggttcatcacatcattctttcttcttggcttgtaaaataagttacatggcaaaactttatagacatatttattgctattattttcatagtgaattttgtaacaacaccaagnctcttgtntcattttagtgttcaatgantcgctttgcagagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="50525" stop="51789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50825" g_stop="50938" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51058" g_stop="51490" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="551" r_length="437" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E345556" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50825" e_stop="50938"/>
          <exon e_start="51058" e_stop="51490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTG-ATTTTGTAACAACACCAAG-CTCTTGT-TCATTTTAGTGTTCAATGA-TCGCTTTGCAGAGACAGAG</genome_strand>
        <mrna_strand>TTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT.......................................................................................................................GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGAATTTTGTAACAACACCAAGNCTCTTGTNTCATTTTAGTGTTCAATGANTCGCTTTGCAGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374161" ref_strand="+" ref_description="SGN-E374161 [TUS-33-P1]">
      <seq>ttcttctggggcgatagaattcatgaaaagggactgggacctgctccaattcctattgacaagcttagtgtagaaggactctctgatgctataacatttatgcttcagcctgatgtgaaatcccgagtaatggaactagctgtattattagagaacgaagatggtgttgcaggtgcagttgatgctttccatcggcatttgccttcagaaatgccattgccaaccccaaccccggcttatgaggatatcgatggtccaaatccgttacaatggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttggctctgaaactgcatttatagagttgcatagttgtgttatttcatatttttttttgattaattggttgtattggttcatcacatcattctttcttcttggcttgtaaaataagttacatggcaaaactttatagacatatttattgctattattttcatagtgattttgtaacaacaccaagctcttgttcattttagtgttcaatgatcgctttgcagagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="50525" stop="51789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50825" g_stop="50938" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51058" g_stop="51490" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="547" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E374161" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50825" e_stop="50938"/>
          <exon e_start="51058" e_stop="51490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGACAGAG</genome_strand>
        <mrna_strand>TTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT.......................................................................................................................GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378576" ref_strand="+" ref_description="SGN-E378576 [TUS-33-P1]">
      <seq>ttcttctggggcgatagaattcatgaaaagggactgggacctgctccaattcctattgacaagcttagtgtagaaggactctctgatgctataacatttatgcttcagcctgatgtgaaatcccgagtaatggaactagctgtattattagagaacgaagatggtgttgcaggtgcagttgatgctttccatcggcatttgccttcagaaatgccattgccaaccccaaccccggcttatgaggatatcgatggtccaaatccgttacaatggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttggctctgaaactgcatttatagagttgcatagttgtgttatttcatatttttttttgattaattggttgtattggttcatcacatcattctttcttcttggcttgtaaaataagttacatggcaaaactttatagacatatttattgctattattttcatagtgattttgtaacaacaccaagctcttgttcattttagtgttcaatgatcgctttgcagagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="50525" stop="51789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50825" g_stop="50938" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51058" g_stop="51490" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="547" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E378576" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50825" e_stop="50938"/>
          <exon e_start="51058" e_stop="51490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGACAGAG</genome_strand>
        <mrna_strand>TTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT.......................................................................................................................GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250876" ref_strand="-" ref_description="SGN-E250876 [cLEG-13-A15]">
      <seq>tcatgaaaagggtctgggacatgctccaattcctattgacaagcttagtgtagaaggactctctgatgctataacatttatgcttcagcctgatgtgaaatcccgagtaatggaactagctgtattattagagaacgaagatggtgttgcaggtgcagttgatgctttccatcggcatttgccttcagaaatgccattgccaaccccaaccccggcttatgagcatatcgatggtccaaatccgttacaatggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttggctctgaaactgcatttatagagttgcatagctgtgttatttcatatttattttttcattaattggttgtactggttcatcacatcattccttcatcttggcttgtaaaataagttacatggcaaaactttatagacatatttattgctattatcctcatagtgatttcgtaacaaccgcaagctcttgttcattttagtgttcaatgaacgctttgcagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="50545" stop="51785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50845" g_stop="50938" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51058" g_stop="51486" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="524" r_length="430" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E250876" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250876" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50845" e_stop="50938"/>
          <exon e_start="51058" e_stop="51486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTT-TTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGAC</genome_strand>
        <mrna_strand>TCATGAAAAGGGTCTGGGACATGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT.......................................................................................................................GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGCATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGCTGTGTTATTTCATATTTATTTTTTCATTAATTGGTTGTACTGGTTCATCACATCATTCCTTCATCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATCCTCATAGTGATTTCGTAACAACCGCAAGCTCTTGTTCATTTTAGTGTTCAATGAACGCTTTGCAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451854" ref_strand="+" ref_description="SGN-E451854 [cSTS-14-M10]">
      <seq>gtggtttgggatttgctgcaattgcatacctcggagtagactctctccggtttctttctccggcatggcatgaaccggttacagccggcaccatggaccataattggcgaatcgctgctattattcgggttccaattttacaaacacctggtcatcggagctccgttcagctataccctttattttcgcaatgatttttttgctctctgctcttctttttgaagccatttctgtccgctctgtcactgccgttcttggtcttgaatggaacagtgatgcatcacctcttcctgatgttggtcagtggttggtgctgtcgttgaatgagaaactacctcaaacagtggttaatatattgagagctcgtataattggattacatcattttctgatgctgtttatcatgcttgctttctctgtactctttgaatcggttgaagctcctggtcttgggcttggtgcaagattcatgttcacaatgggaatcggaaggctactttcgggccataacttttatctccacaattctaccatctgctcgaccatggtgtgcatctgctagattccttgatcctcagcaccctcatccttgggctcagaaatattatgtaccatatgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="53740" stop="56997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54040" g_stop="54307" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54308" i_stop="56349" i_length="2042">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56350" g_stop="56697" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="622" r_length="349" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E451854" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54040" e_stop="54307"/>
          <exon e_start="56350" e_stop="56697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTGGGATTTGCTGCAATTGCTTACATCGGAGTAGACTATCTCCGGTTTATTTCTCCGGCATGGCATG-ACCGGTTACAGCCGACGCTATGGACCAT-ATTGGCG-ATCGCTGCTATTATTCGGGTTCCA-TTTTACAAACA-CTGGTCATCAGAGCTCCGTTCAGCTATACCATTTATTTTCGCTATGCTTTTTTTGCTCTCTGCTCTTCTTTTTGAAGCCATTTCTGTCCGCTCTGTCACTGCCGTTCTTGGTCTTGAATGGAACAGGTATGTATATGCTTTAAAGTAGTGCTCTTTTTTAATTCATAATTTTATTGATTTGTTTCAATTTTTTGAAGTTTTGGCAAATTTGTGTATATTGGGAAATATGGGTTTCAGATTTGGATGGGAAAACTGACTTGGGGTTGAGTGCATTTTTGAGCTTGTTAATGATAAGTTTGAGTTTGTATTGTGAAGAATGGAAATGATAATTTCTTGTTTGCATCCCAAATCTGATCTAATTTGTGGTTTTCTCAATTGCTCTATAGATTTTGTTACATTGTAAAATCTAAGCAGAGTTAGATGCAGAAATTGGATGAACTATTAGAGAGAATTTGGAGCTACATCATTTTTACTCTGAATGATCAGAAATTGTTATTGAGTTACCTTCAAAATCACACATACATACTTTTGAATTTTTTCATTGAAGATTGCATATATCCATTTATGGGAAAAACACAAGGTTTGGATTTCTATACTGGGATTAATTAAAGCTGATAGATCAGACCAAAAAAATTGGTATAGGTCAATCTCACTTATCCTGGAGACAGAATTAAGAGGGATGCATTTTTCTATATGCTTCGGTTTGCTTAAGTTATGTTGCTCCGACTCTCCAAAATGCTGCCGCACCCATGACTGATCTTCCATAAATGCACTACGTTTGGAGGATCCAACATGCATCTCGACAACAATTTTGTGCAGTACATTGGTATGGGTAATCCTTTGTTAGATTTCAAAAGTAATGAAAATCTTAAGTGGATTAGTTTGTGCTCTTGGTATGTCTTGTGTCTGTGAATAATGGTATTTTGCGTATAATTCTTTCTTGTGATTAATTAAATTCTGTACGTGATGCTCATCATAAATTAAATCCTCACATTCTTCTGCCAAGTGATCCAAATAAGACTGGGATCATGGCACTGTTGCTTTTTAGATACATCTTTTGGAAATGACAAAGCATACGTTGTTTAAGTTTTTACCATGTCACCAGATTGTTAGAATTGGGGAATGGGCGACTTTTTGGATTTTTTAAATTGGGGACTTCTCTGACTGAATTCAAGATGAGTAGACAGAGCTTGGAAACTAATAGAGGAAGTGGAGGAAAACCGGGAAGGTATAAGGCTTAGGAAATCGAGGATGGGAACTTCTTTGAGAATTTTGATAAAGAAGAGGGAGTTTGGAAACCGAGGAGGCAAAGAGACAACTGTGTAAGGATGAAGATGTCAGGTGATAAAAAAAGGGATCTTTTTGAGCTTTTTCCAAAGCTTCTGTACTGAGACACTTTCAAGCAAAATAAAAACAGATAGCTAGTAAAGTCATAACTAAAAGAGAGAACTAATTGTGCTGTATTTGAAATCATATATTAACCTGTGTTGCATGTCTTGGTTAGCTTGGATTGGTTAGGTGTGATCTGTCTTGGGATTCTAGATATGCTAACGTCATCTAGATGTGTAAGGATACATGGTCTAGATTCTAGTGAGATACAATACAACAATGTCTTTTAATAGCAGAATTTCACAAAGATGCTGAATTGATAGTTCTAAAATGCTGTCTAAGGCGAGTAATATAAAGGAAAATCTGGCTTGCATCATCACAATTAACAAACTTTGCCTCCAGTATCACCACTATTAGAAGTTAAACAGTTTGACATTGATTTCCTTTCCTGTTCTTGTTTTTGAGAAATATGTCTATCGTTGAAGCACAATGTGAAGTGGTGAAAGGCTTCTTGAAGCATGGATAAATTTCATTTTTTTTAAAAAAAAAGTCTTACGGATATCTGTAGACACGATCAGAATGCCCTAAAGTGGTTATGTTATCAATCATGGCACGCAACCTTGTTTTGCCTCCTAGAAGATTGAAAGTTTAGACGCATACTTGGTCCCAATTTACAATGTTTGGCTTGTGTCCAGAAAAATAAATTAACAATTGAGTCTTTTTCCTTTTGTAAGCAAAAATAGCAATTATAACTTTGCTTCATTATGTTTGATCTCTCTTCTTTCTTAAATGACCATCTATAGTCTTTACAAGTTCTTCTCTTTGCAATTTATTGACAGTGATGCATCACCTCTTCCTGATGTTGGTCAGTGGTTGGTGCTGTCATTGAATGAGAAACTACCTCAAACAGTGGTTAATATATTGAGAGCTCGTATAATTGGATTACATCATTTTCTGATGCTGTTTATCATGCTTGCTTTCTCTGTACTCTTTGAATCGGTTGAAGCTCCTGGTCTTGGGCTTGGTGCAAGATTCATGTTCACAATGGGAATCGGAAGGCTAC-TTCGGGCCATAACTTTTATCTCCACAATTCTACCATCTGCTCGACCATGGTGTGCATCTGCTAGATTCCTTGTTCCTCAGCACCCTCATCCTTGGGCTCAGAAATATTATGTACCATATGCCAC</genome_strand>
        <mrna_strand>GTGGTTTGGGATTTGCTGCAATTGCATACCTCGGAGTAGACTCTCTCCGGTTTCTTTCTCCGGCATGGCATGAACCGGTTACAGCCGGCACCATGGACCATAATTGGCGAATCGCTGCTATTATTCGGGTTCCAATTTTACAAACACCTGGTCATCGGAGCTCCGTTCAGCTATACCCTTTATTTTCGCAATGATTTTTTTGCTCTCTGCTCTTCTTTTTGAAGCCATTTCTGTCCGCTCTGTCACTGCCGTTCTTGGTCTTGAATGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCATCACCTCTTCCTGATGTTGGTCAGTGGTTGGTGCTGTCGTTGAATGAGAAACTACCTCAAACAGTGGTTAATATATTGAGAGCTCGTATAATTGGATTACATCATTTTCTGATGCTGTTTATCATGCTTGCTTTCTCTGTACTCTTTGAATCGGTTGAAGCTCCTGGTCTTGGGCTTGGTGCAAGATTCATGTTCACAATGGGAATCGGAAGGCTACTTTCGGGCCATAACTTTTATCTCCACAATTCTACCATCTGCTCGACCATGGTGTGCATCTGCTAGATTCCTTGATCCTCAGCACCCTCATCCTTGGGCTCAGAAATATTATGTACCATATGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426119" ref_strand="+" ref_description="SGN-E426119 [STM-46-G9]">
      <seq>gctcttctttttgattcttctctgtccgctctgtcactgccgttcttggtcttgaatggaacagtgatgcttcacctcttcctgatgttggtcagtggttggtgctgtcgttgaatgagaaactacctcaaacagtggttaatatattgagagctcgtataattggattacatcattttctgatgctgtttatcatgcttgctttctctgtactctttgaatcggttgaagctcctggtcttgggcttggtgcaagattcatgttcacaatgggaatcggaaggttacttcgggccataacttttatctccacaattctaccatctgctcgaccatggtgtgcatctgctagattccttgttcctcagcaccctcatccttgggctcagaaatattatgtaccatatgccacagattcaaatgccatacggaacgtcataaactgggacacagcatatgctgatcctggggaatacgatccggagtttcgaccagattggggttcaatgagctttctgattgatttccttcggcctacagctcctgagggatcatctgcttggtatcatctgctaaagaaagcgtcagggggttgcaatgaccttatatatagtggccacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="53943" stop="57445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54243" g_stop="54307" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54308" i_stop="56349" i_length="2042">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56350" g_stop="56744" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="459" r_length="395" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56745" i_stop="56979" i_length="235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56980" g_stop="57145" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="625" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E426119" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54243" e_stop="54307"/>
          <exon e_start="56350" e_stop="56744"/>
          <exon e_start="56980" e_stop="57145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCTTTTTGAAGCCATTTCTGTCCGCTCTGTCACTGCCGTTCTTGGTCTTGAATGGAACAGGTATGTATATGCTTTAAAGTAGTGCTCTTTTTTAATTCATAATTTTATTGATTTGTTTCAATTTTTTGAAGTTTTGGCAAATTTGTGTATATTGGGAAATATGGGTTTCAGATTTGGATGGGAAAACTGACTTGGGGTTGAGTGCATTTTTGAGCTTGTTAATGATAAGTTTGAGTTTGTATTGTGAAGAATGGAAATGATAATTTCTTGTTTGCATCCCAAATCTGATCTAATTTGTGGTTTTCTCAATTGCTCTATAGATTTTGTTACATTGTAAAATCTAAGCAGAGTTAGATGCAGAAATTGGATGAACTATTAGAGAGAATTTGGAGCTACATCATTTTTACTCTGAATGATCAGAAATTGTTATTGAGTTACCTTCAAAATCACACATACATACTTTTGAATTTTTTCATTGAAGATTGCATATATCCATTTATGGGAAAAACACAAGGTTTGGATTTCTATACTGGGATTAATTAAAGCTGATAGATCAGACCAAAAAAATTGGTATAGGTCAATCTCACTTATCCTGGAGACAGAATTAAGAGGGATGCATTTTTCTATATGCTTCGGTTTGCTTAAGTTATGTTGCTCCGACTCTCCAAAATGCTGCCGCACCCATGACTGATCTTCCATAAATGCACTACGTTTGGAGGATCCAACATGCATCTCGACAACAATTTTGTGCAGTACATTGGTATGGGTAATCCTTTGTTAGATTTCAAAAGTAATGAAAATCTTAAGTGGATTAGTTTGTGCTCTTGGTATGTCTTGTGTCTGTGAATAATGGTATTTTGCGTATAATTCTTTCTTGTGATTAATTAAATTCTGTACGTGATGCTCATCATAAATTAAATCCTCACATTCTTCTGCCAAGTGATCCAAATAAGACTGGGATCATGGCACTGTTGCTTTTTAGATACATCTTTTGGAAATGACAAAGCATACGTTGTTTAAGTTTTTACCATGTCACCAGATTGTTAGAATTGGGGAATGGGCGACTTTTTGGATTTTTTAAATTGGGGACTTCTCTGACTGAATTCAAGATGAGTAGACAGAGCTTGGAAACTAATAGAGGAAGTGGAGGAAAACCGGGAAGGTATAAGGCTTAGGAAATCGAGGATGGGAACTTCTTTGAGAATTTTGATAAAGAAGAGGGAGTTTGGAAACCGAGGAGGCAAAGAGACAACTGTGTAAGGATGAAGATGTCAGGTGATAAAAAAAGGGATCTTTTTGAGCTTTTTCCAAAGCTTCTGTACTGAGACACTTTCAAGCAAAATAAAAACAGATAGCTAGTAAAGTCATAACTAAAAGAGAGAACTAATTGTGCTGTATTTGAAATCATATATTAACCTGTGTTGCATGTCTTGGTTAGCTTGGATTGGTTAGGTGTGATCTGTCTTGGGATTCTAGATATGCTAACGTCATCTAGATGTGTAAGGATACATGGTCTAGATTCTAGTGAGATACAATACAACAATGTCTTTTAATAGCAGAATTTCACAAAGATGCTGAATTGATAGTTCTAAAATGCTGTCTAAGGCGAGTAATATAAAGGAAAATCTGGCTTGCATCATCACAATTAACAAACTTTGCCTCCAGTATCACCACTATTAGAAGTTAAACAGTTTGACATTGATTTCCTTTCCTGTTCTTGTTTTTGAGAAATATGTCTATCGTTGAAGCACAATGTGAAGTGGTGAAAGGCTTCTTGAAGCATGGATAAATTTCATTTTTTTTAAAAAAAAAGTCTTACGGATATCTGTAGACACGATCAGAATGCCCTAAAGTGGTTATGTTATCAATCATGGCACGCAACCTTGTTTTGCCTCCTAGAAGATTGAAAGTTTAGACGCATACTTGGTCCCAATTTACAATGTTTGGCTTGTGTCCAGAAAAATAAATTAACAATTGAGTCTTTTTCCTTTTGTAAGCAAAAATAGCAATTATAACTTTGCTTCATTATGTTTGATCTCTCTTCTTTCTTAAATGACCATCTATAGTCTTTACAAGTTCTTCTCTTTGCAATTTATTGACAGTGATGCATCACCTCTTCCTGATGTTGGTCAGTGGTTGGTGCTGTCATTGAATGAGAAACTACCTCAAACAGTGGTTAATATATTGAGAGCTCGTATAATTGGATTACATCATTTTCTGATGCTGTTTATCATGCTTGCTTTCTCTGTACTCTTTGAATCGGTTGAAGCTCCTGGTCTTGGGCTTGGTGCAAGATTCATGTTCACAATGGGAATCGGAAGGCTACTTCGGGCCATAACTTTTATCTCCACAATTCTACCATCTGCTCGACCATGGTGTGCATCTGCTAGATTCCTTGTTCCTCAGCACCCTCATCCTTGGGCTCAGAAATATTATGTACCATATGCCACAGATTCAAATGCCATACGGAACGTCATAAACTGGGACACAGCATATGGTATTTCTCCCTTCTGATCTTCTCTTCTGTCCTGAAATTCTTACTTGGTTCTTCTTTATGAACTGCCAGTCAGAATGATCCAAAATTGAAAAAGCTCTATACATTTGTTCAATAAGAAATGCTGCCTGCGATCAGGAAATCTCATAAAGCCAGTTTCTTTTAGGTCTTTGATGCTGTTGGTTGAATTCTGTACATAGTATTGATCTTTCATTTCTGTCTCTACTTTCGCTTTCAGCTGATCCTGGGGAATACGATCCGGAGTTTCGACCAGATTGGGGTTCAATGAGCTTTCTGATTGATTTCCTTCGGCCTACAGCTCCTGAGGGATCATCTGCTTGGTATCATCTGCTAAAGAAAGCGTCAGGGGGTTGCAATGACCTTATATATAGTGGCCACATGCT</genome_strand>
        <mrna_strand>GCTCTTCTTTTTG-ATTCTTCTCTGTCCGCTCTGTCACTGCCGTTCTTGGTCTTGAATGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCTTCACCTCTTCCTGATGTTGGTCAGTGGTTGGTGCTGTCGTTGAATGAGAAACTACCTCAAACAGTGGTTAATATATTGAGAGCTCGTATAATTGGATTACATCATTTTCTGATGCTGTTTATCATGCTTGCTTTCTCTGTACTCTTTGAATCGGTTGAAGCTCCTGGTCTTGGGCTTGGTGCAAGATTCATGTTCACAATGGGAATCGGAAGGTTACTTCGGGCCATAACTTTTATCTCCACAATTCTACCATCTGCTCGACCATGGTGTGCATCTGCTAGATTCCTTGTTCCTCAGCACCCTCATCCTTGGGCTCAGAAATATTATGTACCATATGCCACAGATTCAAATGCCATACGGAACGTCATAAACTGGGACACAGCATATG...........................................................................................................................................................................................................................................CTGATCCTGGGGAATACGATCCGGAGTTTCGACCAGATTGGGGTTCAATGAGCTTTCTGATTGATTTCCTTCGGCCTACAGCTCCTGAGGGATCATCTGCTTGGTATCATCTGCTAAAGAAAGCGTCAGGGGGTTGCAATGACCTTATATATAGTGGCCACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738040" ref_strand="+" ref_description="SGN-E738040 [LC12AE11]">
      <seq>caactttctcgcgttttcttccttccaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaatttttttctcccttaaaatatgattaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58348" stop="62244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58648" g_stop="58869" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="310" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="488" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61944" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="757" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E738040" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58648" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTT</genome_strand>
        <mrna_strand>CAACTTTCTCGCGTTTTCTTCCTTCC-AAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331402" ref_strand="+" ref_description="SGN-E331402 [cTOD-9-H13]">
      <seq>caactttctcgcgttttcttccttccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58348" stop="62111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58648" g_stop="58869" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="311" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="489" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61811" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="625" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E331402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58648" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATC</genome_strand>
        <mrna_strand>CAACTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735752" ref_strand="+" ref_description="SGN-E735752 [LC02DE07]">
      <seq>cgctttctcgcgttttcttccttccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58649" g_stop="58869" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="310" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="488" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="725" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62210" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="732" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E735752" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58649" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
          <exon e_start="62204" e_stop="62210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAA</genome_strand>
        <mrna_strand>CGCTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA...................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736530" ref_strand="+" ref_description="SGN-E736530 [LC06AE05]">
      <seq>ctttctcgcgttttcttccttccaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="58869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="307" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="485" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61913" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="723" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61914" i_stop="62203" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62212" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="732" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E736530" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61913"/>
          <exon e_start="62204" e_stop="62212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAA</genome_strand>
        <mrna_strand>CTTTCTCGCGTTTTCTTCCTTCC-AAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAA..................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738641" ref_strand="+" ref_description="SGN-E738641 [LC14BG06]">
      <seq>ctttctcgcgttttcttccttccaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="58869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="307" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="485" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61913" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="723" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61914" i_stop="62203" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62212" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="732" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E738641" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61913"/>
          <exon e_start="62204" e_stop="62212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAA</genome_strand>
        <mrna_strand>CTTTCTCGCGTTTTCTTCCTTCC-AAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAA..................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740799" ref_strand="+" ref_description="SGN-E740799 [LC22DG09]">
      <seq>ctttctcgcgttttcttccttccaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="58869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="307" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="485" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61913" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="723" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61914" i_stop="62203" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62212" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="732" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E740799" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61913"/>
          <exon e_start="62204" e_stop="62212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAA</genome_strand>
        <mrna_strand>CTTTCTCGCGTTTTCTTCCTTCC-AAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAA..................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740803" ref_strand="+" ref_description="SGN-E740803 [LC22DH05]">
      <seq>ctttctcgcgttttcttccttccaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="58869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="307" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="485" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61913" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="723" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61914" i_stop="62203" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62212" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="732" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E740803" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61913"/>
          <exon e_start="62204" e_stop="62212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAA</genome_strand>
        <mrna_strand>CTTTCTCGCGTTTTCTTCCTTCC-AAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAA..................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735501" ref_strand="+" ref_description="SGN-E735501 [LC01DE07]">
      <seq>ctttctcgcgttttcttccttccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="58869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="308" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="486" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61913" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="724" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61914" i_stop="62203" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62212" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="733" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E735501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61913"/>
          <exon e_start="62204" e_stop="62212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAA</genome_strand>
        <mrna_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAA..................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589039" ref_strand="+" ref_description="SGN-E589039 [42605]">
      <seq>ctttctcgcgttttcttccttccaaaaatggcattttctatagctgttgccggagccggagccgtagccggagctttggctgctccatcggcgaattgctgttcttctaccaagttttcgtacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactacgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgattcgatgaaagataaaattcatcggttggtgaaaacttggatacagnnnagaagtanncccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtatgtgatcgctttgagggcgcactcaatggtcctcaattgatgcaacgcatagaatctgcactggaagtaaagcagtagtcttgacgtgctgcctttctagttgcttggatcatcgttttgaagttattccgtgtttaagtttcaatgatcgtgttctgtggaagccttcagtttctcacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="62144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="58869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="308" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="496" r_length="188" r_score="0.848"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61844" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="667" r_length="171" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E589039" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCA--AG-TGGTGAAAA-TT-GATACAG---AGAAGTA--CCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAG-TGCTCGAATCATCGTTTTGAAGTTATT-CATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCA</genome_strand>
        <mrna_strand>CTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGTTGCCGGAGCCGGAGCCGTAGCCGGAGCTTTGGCTGCTCCATCGGCGAATTGCTGTTCTTCTACCAAGTTTTCGTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTACGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGATTCGATGAAAGATAAAATTCATCGGTTGGTGAAAACTTGGATACAGNNNAGAAGTANNCCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTATGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGGTCCTCAATTGATGCAACGCATAGAATCTGCACTGGAAGTAAAGCAGTAGTCTTGACGTGCTGCCTTTCTAGTTGCTTGGATCATCGTTTTGAAGTTATTCCGTGTTTAAGTTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732844" ref_strand="+" ref_description="SGN-E732844 [LB03BB12]">
      <seq>cggcacgaggaactttctcgcgttttcttccttccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaatttttttctcccttnaaatatgattaaactttaattttttaacggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58349" stop="62260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58652" g_stop="58869" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="231" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="320" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="498" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61961" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="784" r_length="286" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E732844" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58652" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAAT</genome_strand>
        <mrna_strand>TTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTNAAATATGATTAAACTTTAATTTTTTAACGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732807" ref_strand="+" ref_description="SGN-E732807 [LB03AG11]">
      <seq>cggcacgaggaactttctcgcgttttcttccttccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccctgtatttgcaaagaaaattgattacatacaggtgtacaatgattaatcaatttgccctaactgctctaatttttttctcccttaaaatatgattaaactttaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58349" stop="62252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58652" g_stop="58869" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="231" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="320" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="498" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61952" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="775" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E732807" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58652" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTT</genome_strand>
        <mrna_strand>TTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCCTGTATTTGCAAAGAAAATTGATTACATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462096" ref_strand="+" ref_description="SGN-E462096 [cPRO-10-H11]">
      <seq>gttttcttccttccaaaatggcattttctatagctgctgccggagccggagccggagctttggcttctccatcggcgaattgctgttcttctaccaagttttcgtacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactacgggttgaagtcaaagaaagggtgttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcatagaatctgcattggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatccttttgaagttatttgtgtttaaatttcaaagatcgtgttctgtggaagccttcagtttctcactccatgtatttgcaaagaaaattgattagatacaggtgtacaatggttaatcaatttggcccaactgctgtatttttttctcccttaaatatgattaaactttatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58360" stop="62253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58660" g_stop="58869" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="292" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="470" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61952" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="745" r_length="275" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E462096" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58660" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTT</genome_strand>
        <mrna_strand>GTTTTCTTCCTTCC-AAAATGGCATTTTCTATAGCTGCTGCCGGA---G---CCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATTGCTGTTCTTCTACCAAGTTTTCGTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTACGGGTTGAAGTCAAAGAAAGGGTGTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAGAATCTGCATTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTTGAAGTTATTTGTGTTTAAATTTCAAAGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCACTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGGTTAATCAATTTGGCCCAACTGCTGT-ATTTTTTTCTCCCTT-AAATATGATTAAACTTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430576" ref_strand="+" ref_description="SGN-E430576 [STM-53-L14]">
      <seq>gttttcttccttccaaaaatggcattttctatagctgctgccggagccggagccggagctttggcttctccatcggcgaattgctgttcttctaccaagttttcgtacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactacgggttgaagtcaaagaaagggtgttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcatagaatctgcattggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatccttttgaagttatttgtgtttaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58360" stop="62102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58660" g_stop="58869" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="293" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="471" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61803" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="599" r_length="128" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E430576" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58660" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTT</genome_strand>
        <mrna_strand>GTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGA---G---CCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATTGCTGTTCTTCTACCAAGTTTTCGTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTACGGGTTGAAGTCAAAGAAAGGGTGTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAGAATCTGCATTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTTGAAGTTATTTGTGTTTAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430582" ref_strand="+" ref_description="SGN-E430582 [STM-53-L20]">
      <seq>gttttcttccttccaaaaatggcattttctatagctgctgccggagccggagccggagctttggcttctccatcggcgaattgctgttcttctaccaagttttcgtacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactacgggttgaagtcaaagaaagggtgttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcatagaatctgcattggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58360" stop="62082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58660" g_stop="58869" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="293" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="471" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61782" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="578" r_length="107" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E430582" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58660" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTG</genome_strand>
        <mrna_strand>GTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGA---G---CCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATTGCTGTTCTTCTACCAAGTTTTCGTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTACGGGTTGAAGTCAAAGAAAGGGTGTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAGAATCTGCATTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430643" ref_strand="+" ref_description="SGN-E430643 [STM-54-C1]">
      <seq>gttttcttccttccaaaaatggcattttctatagctgctgccggagccggagccggagctttggcttctccatcggcgaattgctgttcttctaccaagttttcgtacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactacgggttgaagtcaaagaaagggtgttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58360" stop="61290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58660" g_stop="58869" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="293" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="471" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E430643" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58660" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT</genome_strand>
        <mrna_strand>GTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGA---G---CCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATTGCTGTTCTTCTACCAAGTTTTCGTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTACGGGTTGAAGTCAAAGAAAGGGTGTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570166" ref_strand="+" ref_description="SGN-E570166 [14707]">
      <seq>cttccaaaaatggcattttctatagctgttgccggagccggagccgtagccggagctttggctgctccatcggcgaattgctgttcttctaccaagttttcgtacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactacgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgattcgatgacagataaaattcaagtggtgacaaattgatacagagaagtacccaggcctcgcagataagtacaaaatacaggcactgccaaacttcatatggttcacggatggagacgtatgtgatcgctttgaggggcgcacctcaatgggtcctcaattggattcaacgcatagaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58369" stop="61290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58669" g_stop="58869" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="290" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="469" r_length="179" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E570166" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58669" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGA-AAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT</genome_strand>
        <mrna_strand>CTTCCAAAAATGGCATTTTCTATAGCTGTTGCCGGAGCCGGAGCCGTAGCCGGAGCTTTGGCTGCTCCATCGGCGAATTGCTGTTCTTCTACCAAGTTTTCGTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTACGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGATTCGATGACAGATAAAATTCAAGTGGTGACAAATTGATACAGAGAAGTACCCAGGCCTCGCAGATAAGTACAAAATACAGGCACTGCCAAACTTCATATGGTTCACGGATGGAGACGTATGTGATCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539016" ref_strand="+" ref_description="SGN-E539016 [TUS-58-I24](-)">
      <seq>ccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaacccattattggtcgacttctatgcaccctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58372" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58672" g_stop="58869" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="287" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="465" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="702" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62213" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="711" r_length="9" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E539016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58672" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
          <exon e_start="62204" e_stop="62213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAAG</genome_strand>
        <mrna_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAACCCATTATTGGTCGACTTCTATGCACCCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA...................................................................................................................................................................................................................................................................................................AAA-AAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539017" ref_strand="+" ref_description="SGN-E539017 [TUS-58-I23]">
      <seq>ccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgatttatcaatttgccctaactgctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58372" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58672" g_stop="58869" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="287" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="465" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="702" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62213" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="712" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E539017" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58672" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
          <exon e_start="62204" e_stop="62213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAAG</genome_strand>
        <mrna_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTTATCAATTTGCCCTAACTGCTCTA...................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539019" ref_strand="+" ref_description="SGN-E539019 [TUS-58-I24]">
      <seq>ccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58372" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58672" g_stop="58869" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="287" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="465" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="702" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62213" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="712" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E539019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58672" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
          <exon e_start="62204" e_stop="62213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAAG</genome_strand>
        <mrna_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA...................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548151" ref_strand="+" ref_description="SGN-E548151 [TUS-58-I23](-)">
      <seq>ccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58372" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58672" g_stop="58869" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="287" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="465" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="702" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62213" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="712" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E548151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58672" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
          <exon e_start="62204" e_stop="62213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAAG</genome_strand>
        <mrna_strand>CCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA...................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279734" ref_strand="+" ref_description="SGN-E279734 [cLER-5-H16]">
      <seq>caaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58373" stop="62021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58673" g_stop="58869" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="286" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="464" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61720" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="509" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E279734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58673" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCT</genome_strand>
        <mrna_strand>CAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346784" ref_strand="+" ref_description="SGN-E346784 [cTOF-32-C12]">
      <seq>tggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58379" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58679" g_stop="58869" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="280" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="458" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="695" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62204" g_stop="62213" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="705" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E346784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58679" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
          <exon e_start="62204" e_stop="62213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAAG</genome_strand>
        <mrna_strand>TGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA...................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296880" ref_strand="+" ref_description="SGN-E296880 [cLET-26-C5]">
      <seq>ggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58414" stop="62161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58714" g_stop="58869" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="245" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="423" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61861" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="609" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E296880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58714" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAA</genome_strand>
        <mrna_strand>GGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694759" ref_strand="+" ref_description="SGN-E694759 [LH_Ea04M05](-)">
      <seq>gcaatttcccagaaagctttgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggttttcacgtcttgttcctttggttgaagcaaagaagcaaacatttttttcctttgaagatatgttggagaactttgagaaaccattattggtggacttttatgctacctggtgtggtccttgccagttcatggttcctattttaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagggaagtacccagccctcgcagataagtacaaaatacaggcggtgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatttgcactggaagtaaagcagtagttttggcgtgctgcctttttagtgctggaatcatcgttttgaaattattcatgtttaaatttcaatgatggtgttctgtggaagccttcagtttctcactccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttacgggtaactgctgtaattttttttcccttaaaatatgttaaaagactttaattttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58485" stop="62199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58785" g_stop="58869" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="352" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61935" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="612" r_length="260" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="662"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E694759" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58785" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGC-CCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATG</genome_strand>
        <mrna_strand>GCAATTTCCCAGAAAGCTTTGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTTTTCACGTCTTGTTCCTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTTTTCCTTTGAAGATATGTTGGAGAACTTTGAGAAACCATTATTGGTGGACTTTTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTTTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGGGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCGGTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATTTGCACTGGAAGTAAAGCAGTAGTTTTGGCGTGCTGCCTTTTTAGTGCTGGAATCATCGTTTTGAAATTATTCATGTTTAAATTTCAATGATGGTGTTCTGTGGAAGCCTTCAGTTTCTCACTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTACGGGTAACTGCTGTAATTTTTTT-TCCCTTAAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610714" ref_strand="+" ref_description="SGN-E610714 [57880]">
      <seq>cttcgtcgtgttcaaattgggaactacgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcatagaatctgcactggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatccttttgaagttatttgtgtttaaatttcaaagatcgtgttctgtggaagccttcagtttctcactctatgtatttgcaaagaaaattgattagatacaggtgtacaatggttaatcaatttggcctaactgctgtattttttctcccttaaaatatgattaaactttattttttcacaagaatggcaacctttgatcaactgatgttcaatgtattaatcattcaccagatataagcatttgcattgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58501" stop="62313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58801" g_stop="58869" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="158" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="336" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="62031" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="687" r_length="351" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E610714" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58801" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="62031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCT</genome_strand>
        <mrna_strand>CTTCGTCGTGTTCAAATTGGGAACTACGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAGAATCTGCACTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTTGAAGTTATTTGTGTTTAAATTTCAAAGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCACTCTATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGGTTAATCAATTTGGCCTAACTGCTGT-A-TTTTTTCTCCCTTAAAATATGATTAAACTTTATTTTTTCACAAGAATGGCAACCTTTGATCAACTGATGTTCAATGTATTAATCATTCACCAGAT---ATAAGCATTTGCATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430577" ref_strand="-" ref_description="SGN-E430577 [STM-53-L14]">
      <seq>gtggaagcaaagaagcaaacattttctccctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcatagaatctgcattggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatccttttgaagttatttgtgtttaaatttcaaagatcgtgttctgtggaagccttcagtttctcactccatgtatttgcaaagaaaattgattagatacaggtgtacaatggttaatcaatttggcccaactgctgtatttttttctcccttaaaataagattaaactttattttttcacaaaaaggatggn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="60238" stop="62263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="267" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61676" g_stop="61968" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="558" r_length="291" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E430577" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAAC</genome_strand>
        <mrna_strand>GTGGAAGCAAAGAAGCAAACATTTTCTCCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAGAATCTGCATTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTTGAAGTTATTTGTGTTTAAATTTCAAAGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCACTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGGTTAATCAATTTGGCCCAACTGCTGT-ATTTTTTTCTCCCTTAAAATAAGATTAAACTTT-ATTTTTTCACAAAAAGGATGGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430583" ref_strand="-" ref_description="SGN-E430583 [STM-53-L20]">
      <seq>gtggaagcaaagaagcaaccattttcttcctttgaagatatgttggagaactctgagaacccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcatagaatctgcattggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatccttttgaagttatttgtgtttaaatttcaaagatcgtgttctgtggaagccttcagtttctcactccatgtatttgcaaagaaaattgattagatacaggtgtacaatggttaatcaatttggcccaactgctgtatttttttctcccttaaaataaaattaaactttattttttcacaaaaaagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="60238" stop="62267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="267" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61676" g_stop="61967" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="557" r_length="290" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E430583" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAA</genome_strand>
        <mrna_strand>GTGGAAGCAAAGAAGCAACCATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAACCCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAGAATCTGCATTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTTGAAGTTATTTGTGTTTAAATTTCAAAGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCACTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGGTTAATCAATTTGGCCCAACTGCTGT-ATTTTTTTCTCCCTTAAAATAAAATTAAACTTT-ATTTTTTCACAAAAAAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430644" ref_strand="-" ref_description="SGN-E430644 [STM-54-C1]">
      <seq>gcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggttgacttctatgctacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggcactgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcatagaatctgcattggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatccttttgaagttatttgtgtttaaatttcaaagatcgtgttctgtggaagccttcagtttctcactccatgtatttgcaaagaaaattgattagatacaggtgtacaatggttaatcaatttggcccaactgctgtatttttttctcccttaaagaatgattaaactttattttttcacaaaattgaang</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="60244" stop="62266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60544" g_stop="60626" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="261" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61676" g_stop="61967" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="551" r_length="290" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E430644" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430644" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60544" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAA</genome_strand>
        <mrna_strand>GCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTTGACTTCTATGCTACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCACTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAGAATCTGCATTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTTGAAGTTATTTGTGTTTAAATTTCAAAGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCACTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGGTTAATCAATTTGGCCCAACTGCTGT-ATTTTTTTCTCCCTTAAAGAATGATTAAACTTT-ATTTTTTCACAAAATTGAANG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230463" ref_strand="+" ref_description="SGN-E230463 [cLEL-35-F8](-)">
      <seq>tggtccttgccagttcatggttcctattctaaacgaaggtggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="60508" stop="62213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60808" g_stop="60982" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="412" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62204" g_stop="62213" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="422" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E230463" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60808" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
          <exon e_start="62204" e_stop="62213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCTGAATAAAGTAGCAGAGACTTTTCTTTCTGAAAATCAAACCAATACGAAAATGTCTGAGAACAAATGGTGATTTAAGAAATCGAGCTTTAAATAAAATCTTAAAAGTTCAGATAATCAATCAATTTAGTTAATATACGTGCTCATGTATCCTTTTACCATCCAATACCAACAGAAAGCAAAAG</genome_strand>
        <mrna_strand>TGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGGTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA...................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430261" ref_strand="-" ref_description="SGN-E430261 [STM-53-K14]">
      <seq>ccagttcatggttcatattctaaacgaagttggtgactcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagccctcgcagataagtacaaaatacaggctctgccaactttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcagttgatgcaacgcatagaatctgcattggaagtaaagcagtagtcttggcgtgctgcctttctagtgctcggatcatcctttagaagttatttgtgtttaaatttcaaagatcgtgttctgtggaagccttcagtttctcactccatgtatttgcaaagaaaattgattagatacaggtgtacaatggttaatcaatttggcccaactgctgttttttttctcccttaaaataagataactttttttttgcgcaaaaagggagn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="60517" stop="62251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60817" g_stop="60982" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61676" g_stop="61967" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="453" r_length="287" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E430261" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430261" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60817" e_stop="60982"/>
          <exon e_start="61676" e_stop="61967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAA</genome_strand>
        <mrna_strand>CCAGTTCATGGTTCATATTCTAAACGAAGTTGGTGACTCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCCCTCGCAGATAAGTACAAAATACAGGCTCTGCCAACTTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAGTTGATGCAACGCATAGAATCTGCATTGGAAGTAAAGCAGTAGTCTTGGCGTGCTGCCTTTCTAGTGCTCGGATCATCCTTTAGAAGTTATTTGTGTTTAAATTTCAAAGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCACTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGGTTAATCAATTTGGCCCAACTGCTGT--TTTTTTTCTCCCTTAAAATAAGA-T-AACTTT-TTTTTTGCGCAAAAAGGGAGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283382" ref_strand="+" ref_description="SGN-E283382 [cLER-12-E8]">
      <seq>gaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="60580" stop="62204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60880" g_stop="60982" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61676" g_stop="61912" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="340" r_length="237" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E283382" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60880" e_stop="60982"/>
          <exon e_start="61676" e_stop="61912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA</genome_strand>
        <mrna_strand>GAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449291" ref_strand="+" ref_description="SGN-E449291 [cSTS-6-C3]">
      <seq>gcttcaagaagaatgcgtttaggtttggatccaacagggagttattgtatgaagagtatactgtggaagctgcagtgctctgcttagtgctgactaatgcagtggaagtgcatgataaggatgggagaagtttaggggtgggtgtttatgatgtaccgttttcatgggtcaatcatagctgctctcctaatgcttcttacaggttttgtacagcatcagattctggaggaatatcggagtgtaggatatgtccagcagctacagagactggtgctgctggcattgaaagtgaatcaattagtagtaatcctgaacttcagaaatccatgtcagtgattggtggaagtgaaacatgtggtccgaagattatccttagaagtataaagggcatcaacaaaagtgaagaagtgttgattacatacactgacttgttacagcctaaggtgatgaggcaatcagagttgtggtcgaagtacaggttcagttgctgctgtaaactatgtagagcaatgcctacgacttatatggatcattgtctgcaggagatcttaattttaaatctcgattgttcaaatatagcttctggtgacaacttttatgaggaccatgtaatggagaagctgattgattgcttgaatgacgctatagatgacttcctgtcatttaataacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="62471" stop="65653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62777" g_stop="63061" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="339" r_length="285" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63062" i_stop="63167" i_length="106">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63168" g_stop="63271" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="443" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63272" i_stop="64044" i_length="773">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64045" g_stop="64143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="542" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64144" i_stop="65220" i_length="1077">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65221" g_stop="65353" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="675" r_length="133" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E449291" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62777" e_stop="63061"/>
          <exon e_start="63168" e_stop="63271"/>
          <exon e_start="64045" e_stop="64143"/>
          <exon e_start="65221" e_stop="65353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATACTGTGGAAGCTGCAGTGCTCTGTTTAGTGCTGACGAATGCAGTGGAAGTGTACGATAAAGATGGGAGAAGTTTAGGGGTGGGTGTTTATGATGTACCATTTTCATGGGTCAATCATAGCTGCTCTCCTAATGCTTCTTACAGGTTTTGTACAGCATCAGATTCAGGAGGGATATTGGAGAGTAGGATATGTCCAGCAGCTACGGAGACTGGTGCTGCTGGCATTGGACATGAATCAATTAGTAGTAATACTGAACTTCAGAAATCCATGTCAGTTATTGGTAATGAACTACTGTAATTTCTTTCCAAAGTTATGATTTTTTTGATAATCTTGATGGAGAGCAAATGTGATTTTCTTTCTGCTTTCCATTCGTTGTTTGGCGATAGGTGGAAGTGAAGCATGTGGTCCGAAGATAATCCTTAGAAGTATAAAGGGCATCCAAAGAAGTGAAGAAGTGTTGATTTCATACACTGACTTGTTACAGCCTAAGGTACAGTTGTTCTCAATCTTTTGAAGGACATGACACAATTTTATATTATCAAGGACATCACTATAGATAGGAAAGAGTGGATGTCGTGTATTAGGGTAGAAGGCTAGTAGAAGAGAGTGTCGCCTTTCCTTGCATAGGTTTAGTGCCTGTCATAGGACTAGTTGTACCCTTGTAGTTCTTGTGGTATGATGTTTATTGTATTTTGATGATCACATTATTTTAGTTGTTGTTACTGTTTCTCTCTTGTATACTCAACACTGCTTTTTTTTATTAACCACTATGCTTTGTCCATTGTTTTCATCTTCTTTTACTTGGTTTTTGATGCACTTGAGCTGAGGGTCTTCCGTAAACAGGCTCTCTACCTCCACGAGGTAGCGGTAAGGTTTGAGTGCGCTCTACCCTCCCCTGACCCCGCTTTGTGGAATTTCATTGGGTATGTTGTTGTTGTTGTGTTTCTTATCAAATGTTTCTTGATGGAGAACCTTCTGAACTCAGGTATGAACTATGAATCAATTGCCAGTTAGATACATTTTGTATGACTGAACAAATGCTGGTTCCAATGCCGAATAATTTCACTGTAACATTATCAATTCGATTTATTTGAGTTGTTGCTTAGATTGTTTACCAGAATTGTTCTTCTTTTTCAAATCCAGTATATAGGGATGATGACAGCTAAGTTCTACAAGTTATTTTTAATGATGTTCTATGTTAACCATATCAACTTTCAAAAGAAAAAAGAAACAGTTTTAATAGTGACTTTACTTGTCTTCCAGGTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACGATGTAGATCAATGCCTATGACTTATATGGATCATTGTCTGCAGGTAAAATCATATGGTTTGAGAACAATGGTTAGAAGGGTATGCATGTACTGTCGAACCGTAATTGTAATACCATCATTTTTGTCCAACAGTAAGCTCCTTCTTTAAATGATTCCAGTTTCACCTCTTTGATTTTCCGTACCTTATAAATTTTATGTTTGGTAATTGCAGCATATCCTGTTAATTCGAGTTGTAGAGGGTAATCTGGAAATTGGAGCATTTTTCTTTTATTATGATCTATTTTTTGTGTAATTGACCACTAAATAGTTGTAATTTGGAGGGTTCCTTTATTCATTACTTTGATTTTGCTTCCATTGTTTTGTTTTTTTGGGATGAGTACTTTGCTGCCATTGTTGTTTCAGCATATTTGTCTTTTATTTTCCTCAAATTTGGTCTGACATCAAATTGTGTGGCAATCAGAATGCACTTAGTAAAAGAATTAGGCCACAGTTGATACACGTATGGAGGTTTGATGATCATGGAGATGAGATGTGACAATAAATGTTTGTTTCAAAGAAACTAAGGTGTTCAAACTTGGTAAGTGCTCACCAAGGCAAAAATAAAAAAGGAAAAGGACTAAGAGGTGATTTCTGGTGCAACCCCATCACAACTAGAAGTGCTCCGAATCTCCTCCCACTGTCCTTACTCGGGTCTTGGCTCTATTGTACATGTCCTTAATCCGATTCCGACCTAGTGTATGCCACAGGAACAGCTCTAGCCTCCAAGCATCTTCATAGAACCTCCCTCGGAACTTTGTCATATGTCTTTTCTATGTCAATGAAACAGCATGTTTATCATCAAAAGCAATAAGAAATTAAAAATAGCCCAAAAACATCCAGGCTGGTGTTTAACAATCTGCTAAGAAGTCTAGTTTATATATTTTCTCTTGTAATTTTCCATATTGTTTGTTTTCTTCCTTTAAATCTCTGGGAGTTTTTTTCCTTTTAAGCCAAGTTCTGCTTTGAAGTTCGTAGTCAAGCAGAGTTGAAGATCATTGCTCTTCTTGTTTTTTCTCCTAAGAATTATGACATATCTAAGCCTTTAGGATCATTAACATCTTTTGTGAATTTTCTTGTGCAGGAAATCTTAATTTTAAATCTCGATAGTTCAAATATGGCTACTGGTGACAACTTCTATGAGGAACATGTAATGGAGAAGCTGATTGATTGCTTGGATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCA</genome_strand>
        <mrna_strand>AGTATACTGTGGAAGCTGCAGTGCTCTGCTTAGTGCTGACTAATGCAGTGGAAGTGCATGATAAGGATGGGAGAAGTTTAGGGGTGGGTGTTTATGATGTACCGTTTTCATGGGTCAATCATAGCTGCTCTCCTAATGCTTCTTACAGGTTTTGTACAGCATCAGATTCTGGAGGAATATCGGAGTGTAGGATATGTCCAGCAGCTACAGAGACTGGTGCTGCTGGCATTGAAAGTGAATCAATTAGTAGTAATCCTGAACTTCAGAAATCCATGTCAGTGATTG..........................................................................................................GTGGAAGTGAAACATGTGGTCCGAAGATTATCCTTAGAAGTATAAAGGGCATCAACAAAAGTGAAGAAGTGTTGATTACATACACTGACTTGTTACAGCCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACTATGTAGAGCAATGCCTACGACTTATATGGATCATTGTCTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCTTAATTTTAAATCTCGATTGTTCAAATATAGCTTCTGGTGACAACTTTTATGAGGACCATGTAATGGAGAAGCTGATTGATTGCTTGAATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321550" ref_strand="+" ref_description="SGN-E321550 [cTOB-25-E9]">
      <seq>ggatatgtccagcagctacggagactggtgctgctggcattggacatgaatcaattagtagtaatactgaacttcagaaatccatgtcagttattggtggaagtgaagcatgtggtccgaagataatccttagaagtataaagggcatccaaagaagtgaagaagtgttgatttcatacactgacttgttacagcctaaggtgatgaggcaatcagagttgtggtcgaagtacaggttcagttgctgctgtaaacgatgtagatcaatgcctatgacttatatggatcattgtctgcaggaaatcttaattttaaatctcgatagttcaaatatggctactggtgacaacttctatgaggaacatgtaatggagaagctgattgattgcttggatgacgctatagatgacttcctgtcatttaataaccccaagaattgttgtgaaaaactcgagatcctgcttactcaagatcatgttaacgttcttctaaagcctgacggagaaaaatacatcaactcttcagattacatcctcttcaccatgtctctttgcatgccatcctgacacttgcttctgcatacaaagtctctgtaagtgaactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="62666" stop="65829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62966" g_stop="63061" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63062" i_stop="63167" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63168" g_stop="63271" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="200" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63272" i_stop="64044" i_length="773">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64045" g_stop="64143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="299" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64144" i_stop="65220" i_length="1077">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65221" g_stop="65529" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="607" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E321550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62966" e_stop="63061"/>
          <exon e_start="63168" e_stop="63271"/>
          <exon e_start="64045" e_stop="64143"/>
          <exon e_start="65221" e_stop="65529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATGTCCAGCAGCTACGGAGACTGGTGCTGCTGGCATTGGACATGAATCAATTAGTAGTAATACTGAACTTCAGAAATCCATGTCAGTTATTGGTAATGAACTACTGTAATTTCTTTCCAAAGTTATGATTTTTTTGATAATCTTGATGGAGAGCAAATGTGATTTTCTTTCTGCTTTCCATTCGTTGTTTGGCGATAGGTGGAAGTGAAGCATGTGGTCCGAAGATAATCCTTAGAAGTATAAAGGGCATCCAAAGAAGTGAAGAAGTGTTGATTTCATACACTGACTTGTTACAGCCTAAGGTACAGTTGTTCTCAATCTTTTGAAGGACATGACACAATTTTATATTATCAAGGACATCACTATAGATAGGAAAGAGTGGATGTCGTGTATTAGGGTAGAAGGCTAGTAGAAGAGAGTGTCGCCTTTCCTTGCATAGGTTTAGTGCCTGTCATAGGACTAGTTGTACCCTTGTAGTTCTTGTGGTATGATGTTTATTGTATTTTGATGATCACATTATTTTAGTTGTTGTTACTGTTTCTCTCTTGTATACTCAACACTGCTTTTTTTTATTAACCACTATGCTTTGTCCATTGTTTTCATCTTCTTTTACTTGGTTTTTGATGCACTTGAGCTGAGGGTCTTCCGTAAACAGGCTCTCTACCTCCACGAGGTAGCGGTAAGGTTTGAGTGCGCTCTACCCTCCCCTGACCCCGCTTTGTGGAATTTCATTGGGTATGTTGTTGTTGTTGTGTTTCTTATCAAATGTTTCTTGATGGAGAACCTTCTGAACTCAGGTATGAACTATGAATCAATTGCCAGTTAGATACATTTTGTATGACTGAACAAATGCTGGTTCCAATGCCGAATAATTTCACTGTAACATTATCAATTCGATTTATTTGAGTTGTTGCTTAGATTGTTTACCAGAATTGTTCTTCTTTTTCAAATCCAGTATATAGGGATGATGACAGCTAAGTTCTACAAGTTATTTTTAATGATGTTCTATGTTAACCATATCAACTTTCAAAAGAAAAAAGAAACAGTTTTAATAGTGACTTTACTTGTCTTCCAGGTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACGATGTAGATCAATGCCTATGACTTATATGGATCATTGTCTGCAGGTAAAATCATATGGTTTGAGAACAATGGTTAGAAGGGTATGCATGTACTGTCGAACCGTAATTGTAATACCATCATTTTTGTCCAACAGTAAGCTCCTTCTTTAAATGATTCCAGTTTCACCTCTTTGATTTTCCGTACCTTATAAATTTTATGTTTGGTAATTGCAGCATATCCTGTTAATTCGAGTTGTAGAGGGTAATCTGGAAATTGGAGCATTTTTCTTTTATTATGATCTATTTTTTGTGTAATTGACCACTAAATAGTTGTAATTTGGAGGGTTCCTTTATTCATTACTTTGATTTTGCTTCCATTGTTTTGTTTTTTTGGGATGAGTACTTTGCTGCCATTGTTGTTTCAGCATATTTGTCTTTTATTTTCCTCAAATTTGGTCTGACATCAAATTGTGTGGCAATCAGAATGCACTTAGTAAAAGAATTAGGCCACAGTTGATACACGTATGGAGGTTTGATGATCATGGAGATGAGATGTGACAATAAATGTTTGTTTCAAAGAAACTAAGGTGTTCAAACTTGGTAAGTGCTCACCAAGGCAAAAATAAAAAAGGAAAAGGACTAAGAGGTGATTTCTGGTGCAACCCCATCACAACTAGAAGTGCTCCGAATCTCCTCCCACTGTCCTTACTCGGGTCTTGGCTCTATTGTACATGTCCTTAATCCGATTCCGACCTAGTGTATGCCACAGGAACAGCTCTAGCCTCCAAGCATCTTCATAGAACCTCCCTCGGAACTTTGTCATATGTCTTTTCTATGTCAATGAAACAGCATGTTTATCATCAAAAGCAATAAGAAATTAAAAATAGCCCAAAAACATCCAGGCTGGTGTTTAACAATCTGCTAAGAAGTCTAGTTTATATATTTTCTCTTGTAATTTTCCATATTGTTTGTTTTCTTCCTTTAAATCTCTGGGAGTTTTTTTCCTTTTAAGCCAAGTTCTGCTTTGAAGTTCGTAGTCAAGCAGAGTTGAAGATCATTGCTCTTCTTGTTTTTTCTCCTAAGAATTATGACATATCTAAGCCTTTAGGATCATTAACATCTTTTGTGAATTTTCTTGTGCAGGAAATCTTAATTTTAAATCTCGATAGTTCAAATATGGCTACTGGTGACAACTTCTATGAGGAACATGTAATGGAGAAGCTGATTGATTGCTTGGATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCAAGAATTGTTGTGAAAAACTCGAGATCCTGCTTACTCAAGATCATGTTAACGTTCTTCTAAAGCCTGACGGAGAAAAATTACATCAACTCTTCAGATTACATCCTCTTCACCATGTCTCTTTGCATGCCATCCTGACACTTGCTTCTGCATACAAAGTCTCTGTAAGTGAACTGCTG</genome_strand>
        <mrna_strand>GGATATGTCCAGCAGCTACGGAGACTGGTGCTGCTGGCATTGGACATGAATCAATTAGTAGTAATACTGAACTTCAGAAATCCATGTCAGTTATTG..........................................................................................................GTGGAAGTGAAGCATGTGGTCCGAAGATAATCCTTAGAAGTATAAAGGGCATCCAAAGAAGTGAAGAAGTGTTGATTTCATACACTGACTTGTTACAGCCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACGATGTAGATCAATGCCTATGACTTATATGGATCATTGTCTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTTAATTTTAAATCTCGATAGTTCAAATATGGCTACTGGTGACAACTTCTATGAGGAACATGTAATGGAGAAGCTGATTGATTGCTTGGATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCAAGAATTGTTGTGAAAAACTCGAGATCCTGCTTACTCAAGATCATGTTAACGTTCTTCTAAAGCCTGACGGAGAAAAA-TACATCAACTCTTCAGATTACATCCTCTTCACCATGTCTCTTTGCATGCCATCCTGACACTTGCTTCTGCATACAAAGTCTCTGTAAGTGAACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721929" ref_strand="+" ref_description="SGN-E721929 [FC15CH01]">
      <seq>aatcggccgaattgatctgtgaattgaccccattttaagagaagcaatacaatatggctgaagagaaacacccacaccatcaccatttgttccaccacaagaacaaggaggatgagggtggaccagttgattatgaaaaagaagtgaagcaccacagccatctcgagaagattggtgaacttggtgctgttgctgctggtgctttggccttacatgagaaacacaaggcaaagaaggacccagagcatgcacacaagcacaagatagaggaagagattgcagctgttgctgcagttggggcaggtggatttgcattccatgaacatcatcagaaaaaagatgccaagaaagaaaaaaaggaagttgagggtggacaccaccaccaccaccactactaatcaaatttaacttttttaggcacctatggactctatgttttgtctaatataaataaataaaagatactactatatatgtgttttgtatccaatattaatctctctctagattgtatgatttggtgtttctatgttaatctcactatgtaatactttgagcccgtttggatgggcttaataaaagcagctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="66294" stop="67569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66562" g_stop="66774" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66775" i_stop="66886" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66887" g_stop="67269" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="595" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="648"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721929" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66562" e_stop="66774"/>
          <exon e_start="66887" e_stop="67269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGAAGAAAATATCTGTGAATTGACATTAATTTAAGAGAAGCAATACAATATGGCTGAAGAGAAACACCAACACCATCACCATTTGTTCCACCACAAGAACAAGGAGGATGAGGGTGGACCAGTTGATTATGAAAAAGAAGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTAGTATGTAAATATAATAACATATATTCGATATTTTGTTTTTATATACGTTACATTTGATACAAGTCTTCTTTAATTTCTTACGCCGTTTGTGGTTGAATTATTAAATATATAGCATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAA</genome_strand>
        <mrna_strand>AATCG-GCCGAATTGATCTGTGAATTGACCCCATTTTAAGAGAAGCAATACAATATGGCTGAAGAGAAACACCCACACCATCACCATTTGTTCCACCACAAGAACAAGGAGGATGAGGGTGGACCAGTTGATTATGAAAAAGAAGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTA................................................................................................................CATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721930" ref_strand="+" ref_description="SGN-E721930 [FC15CH02]">
      <seq>caaggaggatgagggtggaccatttgattatgaaaaagaagtgaagcacctcagccatctcgagaagattggtgaacttggtgctgttgctgctggtgctttggccttacttgagaaacacaaggcaaagaaggacccatagcatgcacacaagctcaagatagaggatgagattgcagctgttgctgcagttggggcaggtggatttgcattccatgaacatcatcagaaaaaagatgccaagaaagaaaaaaaggaagttgagggtggacaccaccaccaccaccactactaatcaaatttaacttttttaggcacctatggactctatgttttgtctaatataaataactaaaagatactactatatatgtgttttgtatccaatattaatctctctctagattgtatgatttggcgtttctatgttaatctcactatgtaatactttgagcccgtttggatgggcttaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="66366" stop="67554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66666" g_stop="66774" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66775" i_stop="66886" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66887" g_stop="67254" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="477" r_length="368" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721930" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66666" e_stop="66774"/>
          <exon e_start="66887" e_stop="67254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAGGATGAGGGTGGACCAGTTGATTATGAAAAAGAAGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTAGTATGTAAATATAATAACATATATTCGATATTTTGTTTTTATATACGTTACATTTGATACAAGTCTTCTTTAATTTCTTACGCCGTTTGTGGTTGAATTATTAAATATATAGCATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAA</genome_strand>
        <mrna_strand>CAAGGAGGATGAGGGTGGACCATTTGATTATGAAAAAGAAGTGAAGCACCTCAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTA................................................................................................................CTTGAGAAACACAAGGCAAAGAAGGACCCATAGCATGCACACAAGCTCAAGATAGAGGATGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAACTAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGCGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398336" ref_strand="+" ref_description="SGN-E398336 [TUS-42-B15]">
      <seq>caagtgaagcaccacagccatctcgagaagattggtgaacttggtgctgttgctgctggtgctttggccttacatgagaaacacaaggcaaagaaggacccagagcatgcacacaagcacaagatagaggaagagattgcagctgttgctgcagttggggcaggtggatttgcattccatgaacatcatcagaaaaaagatgccaagaaagaaaaaaaggaagttgagggtggacaccaccaccaccaccactactaatcaaatttaacttttttaggcacctatggactctatgttttgtctaatataaataaataaaagatactactatatatgtgttttgtatccaatattaatctctctctagattgtatgatttggtgtttctatgttaatctcactatgtaatactttgagcccgtttggatgggcttaataaaagcagctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="66404" stop="67569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66703" g_stop="66774" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66775" i_stop="66886" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66887" g_stop="67273" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="459" r_length="387" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E398336" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66703" e_stop="66774"/>
          <exon e_start="66887" e_stop="67273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTAGTATGTAAATATAATAACATATATTCGATATTTTGTTTTTATATACGTTACATTTGATACAAGTCTTCTTTAATTTCTTACGCCGTTTGTGGTTGAATTATTAAATATATAGCATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTAC</genome_strand>
        <mrna_strand>CAAGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTA................................................................................................................CATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204092" ref_strand="+" ref_description="SGN-E204092 [cLEC-27-O13]">
      <seq>agtgaagcaccacagccatctcgagaagattggtgaacttggtgctgttgctgctggtgctttggccttacatgagaaacacaaggcaaagaaggacccagagcatgcacacaagcacaagatagaggaagagattgcagctgttgctgcagttggggcaggtggatttgcattccatgaacatcatcagaaaaaagatgccaagaaagaaaaaaaggaagttgagggtggacaccaccaccaccaccactactaatcaaatttaacttttttaggcacctatggactctatgtttcgtctaatataaataaataaaagatactactatgtatgtgttttgtgtccaatattaatctctctctagattgtatgatttggtgtatctatgttaatctcactatgtaatactttgagcccgtgtggatgggcttaataaaagcagctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="66405" stop="67569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66705" g_stop="66774" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66775" i_stop="66886" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66887" g_stop="67273" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="457" r_length="387" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E204092" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66705" e_stop="66774"/>
          <exon e_start="66887" e_stop="67273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTAGTATGTAAATATAATAACATATATTCGATATTTTGTTTTTATATACGTTACATTTGATACAAGTCTTCTTTAATTTCTTACGCCGTTTGTGGTTGAATTATTAAATATATAGCATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTAC</genome_strand>
        <mrna_strand>AGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTA................................................................................................................CATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTCGTCTAATATAAATAAATAAAAGATACTACTATGTATGTGTTTTGTGTCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTATCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTGTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394807" ref_strand="+" ref_description="SGN-E394807 [TUS-42-G4](-)">
      <seq>accaccaccactactaatcaaatttaacttttttaggcacctatggactctatgttttgtctaatataaataaataaaagatactactatatatgtgttttgtatccaatattaatctctctctagattgtatgatttggtgtttctatgttaatctcactatgtaatactttgagcccgtttggatgggcttaataaaagcagcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="66756" stop="67569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67056" g_stop="67272" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E394807" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67056" e_stop="67272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTA</genome_strand>
        <mrna_strand>ACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392685" ref_strand="+" ref_description="SGN-E392685 [TUS-36-J5]">
      <seq>gtttaatcaacaattaatttagtgaagaaaatattattttattaatatggctgaagagaaacaacatcaccgtttgttccaccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagaccctgataatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaattaaatttaagtcacccatctatggactgcataaaataaataaaagttactatatatgtatatatattatgtgttttatgttcagtttaaatttaatttatgtccagtgtgtattagaatggtgtttctcaccttgtaacactttttctataattctattcattaatttgttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69904" stop="71531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70204" g_stop="70402" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71230" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="551" r_length="352" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="563"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E392685" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70204" e_stop="70402"/>
          <exon e_start="70879" e_stop="71230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</genome_strand>
        <mrna_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATTTTATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCTGATAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392684" ref_strand="+" ref_description="SGN-E392684 [TUS-36-J5](-)">
      <seq>gtttaatcaacaattaatttagtgaagaaaatattataatattaatatggctgaagagaaacaacatcaccgtttgttccaccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaattaaatttaagtcacccatctatggactgcataaaataaataaaagttactatatatgtatatatattatgtgttttatgttcagtttaaatttaatttatgtccagtgtgtattagaatggtgtttctcaccttgtaacactttttctataattctattcattaatttaatttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69904" stop="71531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70204" g_stop="70402" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71230" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="551" r_length="352" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="563"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E392684" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70204" e_stop="70402"/>
          <exon e_start="70879" e_stop="71230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</genome_strand>
        <mrna_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTAATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392778" ref_strand="+" ref_description="SGN-E392778 [TUS-36-J6]">
      <seq>gtttaatcaacaattaatttagtgaagaaaatattataatattaatatggctgaagagaaacaacatcaccgtttgttccaccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaattaaatttaagtcacccatctatggactgcataaaataaataaaagttactatatatgtatatatattatgtgttttatgttcagtttaaatttaatttatgtccagtgtgtattagaatggtgtttctcaccttgtaacactttttctataattctattcattaatttgttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69904" stop="71531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70204" g_stop="70402" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71230" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="551" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="563"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E392778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70204" e_stop="70402"/>
          <exon e_start="70879" e_stop="71230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</genome_strand>
        <mrna_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392875" ref_strand="+" ref_description="SGN-E392875 [TUS-36-J6](-)">
      <seq>gtttaatcaacaattaatttagtgaagaaaatattataatattaatatggctgaagagaaacaacatcaccgtttgttccaccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaattaaatttaagtcacccatctatggactgcataaaataaataaaagttactatatatgtatatatattatgtgttttatgttcagtttaaatttaatttatgtccagtgtgtattagaatggtgtttctcaccttgtaacactttttctataattctattcattaatttgttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69904" stop="71531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70204" g_stop="70402" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71230" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="551" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="563"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E392875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70204" e_stop="70402"/>
          <exon e_start="70879" e_stop="71230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</genome_strand>
        <mrna_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241081" ref_strand="+" ref_description="SGN-E241081 [cLED-26-C22]">
      <seq>tttaatcaacaattaatttagtgaagaaaatattataatattaatatggctgaagagaaacaacatcaccgtttgttccaccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaattaaatttaagtcacccatctatggactgcataaaataaataaaagttactatatatgtatatatattatgtgttttatgttcagtttaaatttaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69905" stop="71452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70205" g_stop="70402" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71152" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="472" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E241081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70205" e_stop="70402"/>
          <exon e_start="70879" e_stop="71152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTA</genome_strand>
        <mrna_strand>TTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E741022" ref_strand="+" ref_description="SGN-E741022 [GI|68500166]">
      <seq>atggctgaagagaaacaacatcaccgtttgttccaccacaagaacaaggaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgctgttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggctgctgagaaaggacgccaccactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69950" stop="71352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70250" g_stop="70402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71052" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="327" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E741022" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70250" e_stop="70402"/>
          <exon e_start="70879" e_stop="71052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAA</genome_strand>
        <mrna_strand>ATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAAGGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCTGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCTGCTGAGAAAGGACGCCACCACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E741087" ref_strand="+" ref_description="SGN-E741087 [GI|68500168]">
      <seq>atggctgaagagaaacaacatcaccgtttgttccaccacaagaacaaggaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgctgttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69950" stop="71352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70250" g_stop="70402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71052" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="327" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E741087" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70250" e_stop="70402"/>
          <exon e_start="70879" e_stop="71052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAA</genome_strand>
        <mrna_strand>ATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAAGGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCTGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745062" ref_strand="+" ref_description="SGN-E745062 [GI|68500164]">
      <seq>atggctgaagagaaacaacatcaccgtttgttccaccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69950" stop="71352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70250" g_stop="70402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71052" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="327" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E745062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70250" e_stop="70402"/>
          <exon e_start="70879" e_stop="71052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAA</genome_strand>
        <mrna_strand>ATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392686" ref_strand="+" ref_description="SGN-E392686 [TUS-36-J7](-)">
      <seq>caacatctccgggttgttccgccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatatccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcaaaaggcaaagaaagacccagggaatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcaggtgagaaaggacgacaccactaattaaatttaagtcacccatttatggactgcataaaataaataaaagttactatatatgtatatatattatgtgttttatgttcagtttaaatttaatttatgtccagtgtgtattagaatggtgtttataaccttgtaacactttttctataattctattcattaattaattttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69965" stop="71531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70265" g_stop="70402" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71230" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="491" r_length="352" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="503"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E392686" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70265" e_stop="70402"/>
          <exon e_start="70879" e_stop="71230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCACCG-TTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</genome_strand>
        <mrna_strand>CAACATCTCCGGGTTGTTCCGCCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATATCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCAAAAGGCAAAGAAAGACCCAGGGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGGTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATTTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTATAACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTAATTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="74594" stop="75371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74894" g_stop="75070" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74894" e_stop="75070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76075" stop="77388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="77088" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="77088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAACCCAACAAAACTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCATTGCCCATATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCC-AAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76075" stop="77271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76971" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAACCCAACAAAACTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCATTGCCCATATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCC-AAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76075" stop="77201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76901" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAACCCAACAAAACTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCATTGCCCATATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCC-AAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76146" stop="77425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76446" g_stop="77126" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76446" e_stop="77126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCATTGCCCATATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCC-AAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76146" stop="77105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76446" g_stop="76805" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76446" e_stop="76805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCC-AAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76596" stop="77854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76896" g_stop="77554" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76896" e_stop="77554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTCCAAGATCAATACAGAAGTCAATATCCCTATCTGGCTGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGTACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="78693" stop="76648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78393" g_stop="78207" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78206" i_stop="77462" i_length="745">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77461" g_stop="76948" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78393" e_stop="78207"/>
          <exon e_start="77461" e_stop="76948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAATTTTCATGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCTTGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATACTTGAACCCAGAGAGTGTTATGGATGTGGGGAGACTGGATACATTAAGAGGTATTGTCTAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGGGGTGGTTATGAAAGAGGTCGTCATTCTGGAGGACACGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGTTTTTGTATTGTTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTTCTAATGGTCTTTGATTTACATTGTGAATTGCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTATGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGGTGATTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGATGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTACGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTATCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCAGCCAGATAGGGATATTGACTTCTGTATTGATCTTGGACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76665" stop="78027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76965" g_stop="77727" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76965" e_stop="77727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTCCAAGATCAATACAGAAGTCAATATCCCTATCTGGCTGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGTACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAAGACCATTAGAAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAACCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAT-TTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76665" stop="77926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76965" g_stop="77626" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76965" e_stop="77626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTCCAAGATCAATACAGAAGTCAATATCCCTATCTGGCTGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGTACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAT-TTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="77068" stop="77995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77368" g_stop="77699" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77368" e_stop="77699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAAGACCATTAGAAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAACCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAAT-TTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="77998" stop="79311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78297" g_stop="79011" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78297" e_stop="79011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCATGAAAATTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTACTATCCCTTAAAGTCCGGGGGATATACTTCTCC----A-AAACTAGAGAATGAGGCTCAAGTCATAGGTGGTGCCTCTGTTGTTTGACACTCAACATGTGACCACCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTGCTGACAAGTTCAGGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGGACATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCAGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCTTGATCAGATAACCCTCTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTTCTCATTTTGCACTTGTTCATTCTCCCCATCCTTCCCTTCTCTTATTACTTCCTCAGTCGGTAGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="79315" stop="78162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79015" g_stop="78462" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79015" e_stop="78462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCTACCGACTGAGGAAGTAATAAGAGAAGGGAAGGATGGGGAGAATGAACAAGTGCAAAATGAGAAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGAGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTCCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCCTGAACTTGTCAGCAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGTGGTCACATGTTGAGTGTCAAACAACAGAGGCACCACCTATGACTTGAGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210856" ref_strand="+" ref_description="SGN-E210856 [cLEC-68-N16]">
      <seq>tcatcgatatactatatttcatttatgtcataagttttctttaatttcttaaatcatgcgtccaattatttaaaataggatatgtacggggtactattgtatgtggagataaatagttggactaatgacgcatgagttcgccccaaatctaaagtgatcctatgactttctttacgtcatacttcattcgtttcaaaataagtgttttattttttttagatctaatttgatcactattttttaaaaaattaattggaatagatcaacacaaaattagttttaaaatttaaatttagatattcaacaactattacaaaatttactacaagttacgattattctcatgtgtcgatataatgaaaaaggcattattaaatgaaaatcgactttcacatatcatatcgagaagtactaatagaaatgacagataatttgaagcgaatgatttgagaaataccttagatgacattgcaccatatacttatggttgataaatgaaaataataagtgtattttttctcttacatatctcttcaatatcttagtgttttgttgttacataaatatatatagcatgagaagcataaggcaaagaaggatccagagaatgcacacnaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaaaaaagatgccaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="88433" stop="89742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88733" g_stop="89442" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E210856" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88733" e_stop="89442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCGATATACTATATTTCATTTATGTCATAAGTTTTCTTTAATTTCTTAAATCATGCGTCCAATTATTTAAAATAGGATATGTACGGGGTACTATTGTATGTGGAGATAAATAGTTGGACTAATGACGCATGAGTTCGCCCCAAATCTAAAGTGATCCTATGACTTTCTTTACGTCATACTTCATTCGTTTCAAAATAAGTGTTTTATTTTTTTTAGATCTAATTTGATCACTATTTTTTAAAAAATTAATTGGAATAGATCAACACAAAATTAGTTTTAAAATTTAAATTTAGATATTCAACAACTATTACAAAATTTACTACAAGTTACGATTATTCTCATGTGTCGATATAATGAAAAAGGCATTATTAAATGAAAATCGACTTTCACATATCATATCGAGAAGTACTAATAGAAATGACAGATAATTTGAAGCGAATGATTTGAGAAATACCTTAGATGACATTGCACCATATACTTATGGTTGATAAATGAAAATAATAAGTGTATTTTTTCTCTTACATATCTCTTCAATATCTTAGTGTTTTGTTGTTACATAAATATATATAGCATGAGAAGCATAAGGCAAAGAAGGATCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAA</genome_strand>
        <mrna_strand>TCATCGATATACTATATTTCATTTATGTCATAAGTTTTCTTTAATTTCTTAAATCATGCGTCCAATTATTTAAAATAGGATATGTACGGGGTACTATTGTATGTGGAGATAAATAGTTGGACTAATGACGCATGAGTTCGCCCCAAATCTAAAGTGATCCTATGACTTTCTTTACGTCATACTTCATTCGTTTCAAAATAAGTGTTTTATTTTTTTTAGATCTAATTTGATCACTATTTTTTAAAAAATTAATTGGAATAGATCAACACAAAATTAGTTTTAAAATTTAAATTTAGATATTCAACAACTATTACAAAATTTACTACAAGTTACGATTATTCTCATGTGTCGATATAATGAAAAAGGCATTATTAAATGAAAATCGACTTTCACATATCATATCGAGAAGTACTAATAGAAATGACAGATAATTTGAAGCGAATGATTTGAGAAATACCTTAGATGACATTGCACCATATACTTATGGTTGATAAATGAAAATAATAAGTGTATTTTTTCTCTTACATATCTCTTCAATATCTTAGTGTTTTGTTGTTACATAAATATATATAGCATGAGAAGCATAAGGCAAAGAAGGATCCAGAGAATGCACACNAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246454" ref_strand="+" ref_description="SGN-E246454 [cLEF-52-D3]">
      <seq>gaactagtctcgagttttttttttttttttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgctcacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgngcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42492" stop="98322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95390" g_stop="95408" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.526"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95409" i_stop="96826" i_length="1418">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="186" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97682" g_stop="98022" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="527" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E246454" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95390" e_stop="95408"/>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="98022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTAAGCGCCATTTGTTGCAAGATATCTTTTTATAACAAAATACAAGTTAATTTTCAGATTTAAAAAATATTTAAGAAGTTTTTGAAAAGGGAGTTACATGAATTTTATTATTTTAGGAGTTAATAACTTAGTTACACTTTAGTTTGTAATATTAAATATTTTATTAAATTTTGGTGCCCCAAAGACGTCCAAATACATGTTACTTGAGGTCAAATTTAAGTGTAATTTGAAAAAAAAAAGATCGTTGTAACCAAGTGTATTAGCATATATTTAGGATACATAGTAAATCTCCTTCACCTCTTTCCCATCTTGCTTGCCACTCTCTCGTATATCTAATATTCTAGATACATGTGAATCACTCCTGATATATGTACATAGTTTGATTCACATAATATATGTATAGGATACATACAAATTTCACTTGTTTTTTTTTCTATTTTTTGTGTATCACGTAACAAAAATATATATATCTCAGTGTAGAATACATAAAAAAAATTTTAATTAGTGATAAAATATATAATATATTAAAAATATAAATAATAATAATATATATAATAATAAAGTATGTCTAATTAGGTAGTTTTTCTTTTTGAAAACTGAAATGAGAAAAAGCAAAACATAAAATTGACTTGAATGACAGCTACATGACATTTTCATCTTGTAGTAGGGACATATGATTTGTTTTTTTCCTTTGCCACATGTGTTCTGTTATCCTTAATCTCCAAGTAATCCCATATTTTGGTTGATGATTCACAATATAATCTATCTAATTATGCACCTCCTTCTACTTAAAGAAGAAAAATGTGATGGCGATTGGCAATTGGGAAGATAATTAAAATCTGTTGAGTACTCTTTCATCCGCAATGGCATTCAGTCGATGGAACAATAGTGAAAGAGATGTTTAAAAAAATTATTTACATTTAAAATGATTTTAGATTTGACGCAATCCGAAAAAATTAGTCTATAAAAAAAATTATTTAAAATCATGCAAGAGCTCAATTAACTTCATCCGCCTTTGATGTGAGTTTTTCTACATTCATCACGCTTCCCATCCCCGAACCCCAACACTCTATACTCCGATCCATGACGTGAACAAATTATTCAAGCGTTCAATTTGACTCTAATATCATACTAAATAAACCTAATTTAATAGTAAAAATTAGCTTAACAATTTACTAATTTCACACAATTTTTTATATTGTTGTCTTGTCATTATCTTTAGGTAATAATAGTGTAAAAATTATCTTACACGATTATACTACATAATTTATACGATTCGTTGATAAATTGTATACCAAAGTGCCACCTCATCACACAATAATTTAATTTGGACTAAGTTCACTATTAGTGAATGAATGAATTTTAATTATAAATAGAGGACTTGACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTAC</genome_strand>
        <mrna_strand>GAACTAGTCTCGAGTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCTCACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGNGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714260" ref_strand="+" ref_description="SGN-E714260 [FB10DG10]">
      <seq>caattatttaaaatcatgcaagagctcaattaacttcatccgcctttgatatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96064" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96363" g_stop="96412" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96413" i_stop="96840" i_length="428">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="203" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="711" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="729"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714260" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96363" e_stop="96412"/>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTTAAAATCATGCAAGAGCTCAATTAACTTCATCCGCCTTTGATGTGAGTTTTTCTACATTCATCACGCTTCCCATCCCCGAACCCCAACACTCTATACTCCGATCCATGACGTGAACAAATTATTCAAGCGTTCAATTTGACTCTAATATCATACTAAATAAACCTAATTTAATAGTAAAAATTAGCTTAACAATTTACTAATTTCACACAATTTTTTATATTGTTGTCTTGTCATTATCTTTAGGTAATAATAGTGTAAAAATTATCTTACACGATTATACTACATAATTTATACGATTCGTTGATAAATTGTATACCAAAGTGCCACCTCATCACACAATAATTTAATTTGGACTAAGTTCACTATTAGTGAATGAATGAATTTTAATTATAAATAGAGGACTTGACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CAATTATTTAAAATCATGCAAGAGCTCAATTAACTTCATCCGCCTTTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725054" ref_strand="+" ref_description="SGN-E725054 [FC25DG04]">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaannanaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98192" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="729" r_length="512" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="772"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E725054" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTT-AAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721992" ref_strand="+" ref_description="SGN-E721992 [FC15DE12]">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctnnnnnaaaaannaaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="725" r_length="508" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="771"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721992" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724391" ref_strand="+" ref_description="SGN-E724391 [FC23DH08]">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggatgaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaananaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="725" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="764"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724391" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGATGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722834" ref_strand="+" ref_description="SGN-E722834 [FC18BH08]">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaanaaaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="725" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="764"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E722834" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717796" ref_strand="+" ref_description="SGN-E717796 [FC02DA12]">
      <seq>aatcggccgaattggtatcaaacaccataccctttaaaaattatcgatagatttattgtttcagatggaggacgagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="703" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="750"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717796" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACCCTTTAAAAATTATCGATAGATTTATTGTTTCAGATGGAGGACGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718999" ref_strand="+" ref_description="SGN-E718999 [FC06BH03]">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="703" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="752"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718999" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724742" ref_strand="+" ref_description="SGN-E724742 [FC25AB08]">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="703" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="748"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724742" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723999" ref_strand="+" ref_description="SGN-E723999 [FC22DA07]">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="96993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98089" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="625" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="667"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723999" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="96993"/>
          <exon e_start="97682" e_stop="98089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723835" ref_strand="+" ref_description="SGN-E723835 [FC22AE05]">
      <seq>cggccgaattggtatcaaacaccataccctttcgggattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96780" g_stop="96993" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98187" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="720" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723835" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96780" e_stop="96993"/>
          <exon e_start="97682" e_stop="98187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCT</genome_strand>
        <mrna_strand>CGGCCGAATTGGTATCAAACACCATACCCTTTCGGGATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724112" ref_strand="+" ref_description="SGN-E724112 [FC23AD09]">
      <seq>cggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagctactgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgggcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96780" g_stop="96993" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98182" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="715" r_length="501" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724112" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96780" e_stop="96993"/>
          <exon e_start="97682" e_stop="98182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGAT</genome_strand>
        <mrna_strand>CGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCTACTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGGGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718042" ref_strand="+" ref_description="SGN-E718042 [FC03BH12]">
      <seq>tcggccgaattgatcaaacaccatacaccttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96780" g_stop="96993" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="699" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="752"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718042" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96780" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TCGGCCGAATTG-ATCAAACACCATACACCTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723569" ref_strand="+" ref_description="SGN-E723569 [FC20DF07]">
      <seq>cggccgaattggtatcaaacaccataccctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttacacaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttgaactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96780" g_stop="96993" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98136" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="670" r_length="456" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723569" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96780" e_stop="96993"/>
          <exon e_start="97682" e_stop="98136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTA-AAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAA</genome_strand>
        <mrna_strand>CGGCCGAATTGGTATCAAACACCATACCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTACACAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGAACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718551" ref_strand="+" ref_description="SGN-E718551 [FC05AA04]">
      <seq>cggccgaattggtatcaaacaccataccctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96780" g_stop="96993" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98005" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="538" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="574"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718551" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96780" e_stop="96993"/>
          <exon e_start="97682" e_stop="98005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAA</genome_strand>
        <mrna_strand>CGGCCGAATTGGTATCAAACACCATACCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719167" ref_strand="+" ref_description="SGN-E719167 [FC06DH01]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccataccctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaannnanaannnnnnnnnnanaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="748" r_length="516" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="784"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719167" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAANNNANAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724953" ref_strand="+" ref_description="SGN-E724953 [FC25CF02]">
      <seq>ggcggccaaatcggccgaattggtatcaaacaccatccactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="225" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="741" r_length="516" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724953" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATCCACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724803" ref_strand="+" ref_description="SGN-E724803 [FC25AH01]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccacactttttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="740" r_length="508" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="773"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724803" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCACACTTTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723009" ref_strand="+" ref_description="SGN-E723009 [FC19AB12]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaaattcccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="741" r_length="509" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="764"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723009" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG-AAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718231" ref_strand="+" ref_description="SGN-E718231 [FC04AC11]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="740" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="762"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718231" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719038" ref_strand="+" ref_description="SGN-E719038 [FC06CC10]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannnnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="740" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="763"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719038" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721011" ref_strand="+" ref_description="SGN-E721011 [FC12CA09]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="740" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="776"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721011" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721132" ref_strand="+" ref_description="SGN-E721132 [FC12DE03]">
      <seq>gcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaannnnnaannnnaannnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="223" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="731" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="749" polyA_stop="777"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721132" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719721" ref_strand="+" ref_description="SGN-E719721 [FC08CG10]">
      <seq>ggcgattggcggccaaatcggccgaattggtatcaaacaccataccctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="737" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719721" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720681" ref_strand="+" ref_description="SGN-E720681 [FC11CA12]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98184" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="733" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720681" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG--AAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718367" ref_strand="+" ref_description="SGN-E718367 [FC04BH02]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98168" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="719" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718367" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724419" ref_strand="+" ref_description="SGN-E724419 [FC24AC06]">
      <seq>gcggccaatcggccgaattggtatcaaacaccatccattttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctggtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="223" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="709" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="765"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724419" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATCCATTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719870" ref_strand="+" ref_description="SGN-E719870 [FC09AE01]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgnanaaaannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="231" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="717" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="757"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719870" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATC-AACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718452" ref_strand="+" ref_description="SGN-E718452 [FC04CH05]">
      <seq>tggcggccaatcggccgaattggtatcaaacaccataccctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaataaaaaaaaanaaaaaaaaaaaaaaaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="225" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="711" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="735"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718452" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719123" ref_strand="+" ref_description="SGN-E719123 [FC06DC06]">
      <seq>gggcgaattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggaggtccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="233" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="719" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="739"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719123" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGTCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721470" ref_strand="+" ref_description="SGN-E721470 [FC14AA12]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctggtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="718" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="765"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721470" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724316" ref_strand="+" ref_description="SGN-E724316 [FC23DA02]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccacacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaacaccaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="718" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="736"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724316" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCACACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717425" ref_strand="+" ref_description="SGN-E717425 [FC01AG06]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="718" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="762"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717425" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722400" ref_strand="+" ref_description="SGN-E722400 [FC17AF08]">
      <seq>gggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="718" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="749"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E722400" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718676" ref_strand="+" ref_description="SGN-E718676 [FC05BG05]">
      <seq>tagggcgattggcggccaatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttnnaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96787" g_stop="96993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="234" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98089" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="642" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="672"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718676" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96787" e_stop="96993"/>
          <exon e_start="97682" e_stop="98089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTT</genome_strand>
        <mrna_strand>ATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277479" ref_strand="+" ref_description="SGN-E277479 [cLER-3-I10]">
      <seq>ttgtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96489" stop="98337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96789" g_stop="96993" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98037" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="561" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E277479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96789" e_stop="96993"/>
          <exon e_start="97682" e_stop="98037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATG</genome_strand>
        <mrna_strand>TTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720830" ref_strand="+" ref_description="SGN-E720830 [FC11DH09]">
      <seq>ggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctaccccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannnnaaanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96491" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96993" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="712" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="756"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720830" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>GGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACCCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721715" ref_strand="+" ref_description="SGN-E721715 [FC14DH11]">
      <seq>ggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannnnaaaaaanaaaaaaaaaaaaaaaaaanaaaaanaanaaaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96491" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96993" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="712" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="740"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721715" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>GGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717409" ref_strand="+" ref_description="SGN-E717409 [FC01AF01]">
      <seq>ggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96491" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96993" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="709" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717409" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>GGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719008" ref_strand="+" ref_description="SGN-E719008 [FC06CA01]">
      <seq>ggtatcaaacaccataccctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96491" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96993" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="690" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="744"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719008" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GGTATCAAACACCATACCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720533" ref_strand="+" ref_description="SGN-E720533 [FC11AD06]">
      <seq>ggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtttgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96491" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96993" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="690" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="761"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720533" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTTTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719013" ref_strand="+" ref_description="SGN-E719013 [FC06CA08]">
      <seq>ggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96491" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96993" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="690" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="740"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719013" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719360" ref_strand="+" ref_description="SGN-E719360 [FC07CE03]">
      <seq>ggtatcaaacaccatccattaaacaaattatcgatagatttattgtttcagatggagcaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataaaaacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96514" stop="98385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="96993" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98085" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="609" r_length="405" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="661"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719360" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="96993"/>
          <exon e_start="97682" e_stop="98085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG-AAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</genome_strand>
        <mrna_strand>GGTATCAAACACCATCCATTAAACAAATTATCGATAGATTTATTGTTTCAGATGGAGCAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAAAAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723785" ref_strand="+" ref_description="SGN-E723785 [FC21DF12]">
      <seq>cccatggggatccgatggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgctttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96481" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96791" g_stop="96993" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="220" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="727" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="743"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723785" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96791" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>GTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGC-TTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720921" ref_strand="+" ref_description="SGN-E720921 [FC12BA07]">
      <seq>cccatggggatccgatggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaactaanaaacaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96481" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96791" g_stop="96993" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="220" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="728" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="754"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96791" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>GTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717490" ref_strand="+" ref_description="SGN-E717490 [FC01BE09]">
      <seq>gggcgattggcggccaatcggccgaattccatggggatccgatggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctngtgnaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96481" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96791" g_stop="96993" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="247" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="733" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="750"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96791" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTNGTGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276342" ref_strand="+" ref_description="SGN-E276342 [cLEN-21-L10]">
      <seq>gaattcggcacgagcactttctaaattatctatagatttattgtttcagatggaggaggagaaacaccaccgccaccatctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96791" g_stop="96993" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98038" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="559" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E276342" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96791" e_stop="96993"/>
          <exon e_start="97682" e_stop="98038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGT</genome_strand>
        <mrna_strand>GAATTCGGCACGA-GCACTTTCTAAATTATCTATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCGCCACCATCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721904" ref_strand="+" ref_description="SGN-E721904 [FC15CE11]">
      <seq>gggcgattggcggccaatcggccgaattatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96492" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="96993" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="229" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98192" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="740" r_length="511" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="741" polyA_stop="781"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721904" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="96993"/>
          <exon e_start="97682" e_stop="98192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA</genome_strand>
        <mrna_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTANNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717716" ref_strand="+" ref_description="SGN-E717716 [FC02CB06]">
      <seq>aatcggccgaattatcaaacaccatacactccctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96492" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="96993" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="214" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="722" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="746"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717716" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>TATCAAACACCATACACTCCCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723817" ref_strand="+" ref_description="SGN-E723817 [FC22AC04]">
      <seq>gatcaaacaccatacaccttttaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96493" stop="98485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="96993" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98185" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="705" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723817" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="96993"/>
          <exon e_start="97682" e_stop="98185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</genome_strand>
        <mrna_strand>GATCAAACACCATACACCTTTTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTT-AAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723169" ref_strand="+" ref_description="SGN-E723169 [FC19CE08]">
      <seq>gggcgattggcggccaatcggccgaattatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96492" stop="98484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="96993" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="229" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98184" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="732" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="96993"/>
          <exon e_start="97682" e_stop="98184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</genome_strand>
        <mrna_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722581" ref_strand="+" ref_description="SGN-E722581 [FC17CG09]">
      <seq>gatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggggtaataaataatgagttttctagtgaatggatttgtttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96493" stop="98481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="96993" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98180" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="701" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="758"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E722581" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="96993"/>
          <exon e_start="97682" e_stop="98180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTG</genome_strand>
        <mrna_strand>GATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGGGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723305" ref_strand="+" ref_description="SGN-E723305 [FC20AD07]">
      <seq>gatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgctttttaagtggtgtaataaataatgagttttctagtgaaaaanannnnnnnnaaaaaaaaaaaaaaaaaaaaaaaananncaaccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96493" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="96993" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="687" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="727"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723305" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGC-TTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725132" ref_strand="+" ref_description="SGN-E725132 [FC26AF12]">
      <seq>aatcggccgaattatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96492" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="96993" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="214" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="700" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="742"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E725132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724491" ref_strand="+" ref_description="SGN-E724491 [FC24BA11]">
      <seq>tagggcgattggcggccaatcggccgaattcccatggggatccgctgatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96490" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96793" g_stop="96993" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="248" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98190" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="757" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96793" e_stop="96993"/>
          <exon e_start="97682" e_stop="98190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAA</genome_strand>
        <mrna_strand>ATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718241" ref_strand="+" ref_description="SGN-E718241 [FC04AD10]">
      <seq>gggcgattggcggccaatcggccgaattgatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96793" g_stop="96993" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="230" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="738" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="760"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96793" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717895" ref_strand="+" ref_description="SGN-E717895 [FC03AC02]">
      <seq>gggcgattggcggccaatcggccgaattgatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96793" g_stop="96993" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="230" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="716" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="758"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717895" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96793" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718068" ref_strand="+" ref_description="SGN-E718068 [FC03CC11]">
      <seq>gaaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaannnaaaaaaaaaaaaaaaaaaaaaattccccgcccaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96496" stop="98489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96794" g_stop="96993" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="708" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="734"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718068" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96794" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>GAAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720600" ref_strand="+" ref_description="SGN-E720600 [FC11BB03]">
      <seq>caaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatcttccaaaatgaccatgtgtgttttggactttcctcgcactcttctgttgaactaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96495" stop="98484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96795" g_stop="96993" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98184" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="701" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720600" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96795" e_stop="96993"/>
          <exon e_start="97682" e_stop="98184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGAT-TTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</genome_strand>
        <mrna_strand>CAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG--AAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATCTTCCAAAATGACCATGTGTGTTTTGGACTTTCCTCGCACTCTTCTGTTGAACTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720068" ref_strand="+" ref_description="SGN-E720068 [FC09CH10]">
      <seq>aaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgggcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96496" stop="98456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96796" g_stop="96993" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98156" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="673" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720068" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96796" e_stop="96993"/>
          <exon e_start="97682" e_stop="98156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAG</genome_strand>
        <mrna_strand>AAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGGGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723171" ref_strand="+" ref_description="SGN-E723171 [FC19CE11]">
      <seq>aacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcatgtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttgaactttcctcgcaatcttctgttgaattaccttgaaaaatgttgcttttttaagtggtgtaataaaataatgagttttctagtgaatggatttgtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96497" stop="98485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96797" g_stop="96993" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98185" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="702" r_length="505" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723171" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96797" e_stop="96993"/>
          <exon e_start="97682" e_stop="98185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAAT-AAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</genome_strand>
        <mrna_strand>AACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCATGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGAACTTTCCTCGCAATCTTCTGTTGAATTACCTTGAAAAATGTTGCTTTTTTAAGTGGTGTAATAAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329493" ref_strand="+" ref_description="SGN-E329493 [cTOD-11-L23]">
      <seq>cactatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggaccaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagccaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggaccaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaagatgtattgtgatttccaaaatgatcatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96499" stop="98377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96799" g_stop="96993" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98077" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="594" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E329493" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96799" e_stop="96993"/>
          <exon e_start="97682" e_stop="98077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGA-CAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAG-CAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGA-CACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGT</genome_strand>
        <mrna_strand>CACTATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACCAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACCACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAAGATGTATTGTGATTTCCAAAATGATCATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688841" ref_strand="+" ref_description="SGN-E688841 [t3_tus_55_A16]">
      <seq>tcgagactagctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttggtacgttgatataatcttaccttatatatataaacgttattatcgattatttatacaaatcattttcttttattcaaattacgatcaaaatcatttaagagtttttctaccgggaacatccgattagtcaagattttcatcggagagtttgaatatattgattcctaataaaatgattttatttcctcgattcatgccaaaaatctataattaaggacggaagagtagccaattatttatttaatataatttaattccttttttccttttaaatttttagtttaatttcataatatatgtaaggaaggggtgtgaaaaatttaaagaagataaacagagaagggatggttttatttgcgagtaaaagagtttattttctatctaaacacgtttacactaatttcacattaagttcacctaattatagtaactctctatcatctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96505" stop="97739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96802" g_stop="97439" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E688841" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96802" e_stop="97439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATA</genome_strand>
        <mrna_strand>TCGAGACTAGCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551518" ref_strand="+" ref_description="SGN-E551518 [TUS-55-A16]">
      <seq>tcgagactagctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttggtacgttgatataatcttaccttatatatataaacgttattatcgattatttatacaaatcattttcttttattcaaattacgatcaaaatcatttaagagtttttctaccgggaacatccgattagtcaagattttcatcggagagtttgaatatattgattcctaataaaatgattttatttcctcgattcatgccaaaaatctataattaaggacggaagagtagccaattatttatttaatataatttaattccttttttccttttaaatttttagtttaatttcataatatatgtaaggaaggggtgtgaaaaatttaaagaagataaacagagaagggatggttttatttgcgnagtaaagagtttattttctatctaaacacgtttacactaatttcacattaagttcacctaattatagtaactctctatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96505" stop="97737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96802" g_stop="97437" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E551518" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96802" e_stop="97437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCG-AGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTA</genome_strand>
        <mrna_strand>TCGAGACTAGCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGNAGT-AAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703924" ref_strand="+" ref_description="SGN-E703924 [FA22DD11]">
      <seq>cgactctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96505" stop="98489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96803" g_stop="96993" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="699" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E703924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96803" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CGACTCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258833" ref_strand="+" ref_description="SGN-E258833 [cLEG-50-P8]">
      <seq>cgagactagctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttggtacgttgatataatcttaccttatatatataaacgttattatcgattatttatacaaatcattttcttttattcaaattacgatcaaaatcatttaagagtttttctaccgggaacatccgattagtcaagattttcatcggagagtttgaatatattgattcctaataaaatgattttatttcctcgattcatgccaaaaatctataattaaggacggaagagtagccaattatttatttaatataatttaattccttttttccttttaaatttttagtttaatttcataatatatgtaaggaaggggtgtgaaaaatttaaagaagataaacagagaagggatggttttatttgcgagtaaaagagtttattttctatctaaacacgtttacactaatttcacattaagttcacctaaatatagtaactctctatcatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96505" stop="97738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96803" g_stop="97438" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E258833" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96803" e_stop="97438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTAT</genome_strand>
        <mrna_strand>CGAGACTAGCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAAATATAGTAACTCTCTATCATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717014" ref_strand="+" ref_description="SGN-E717014 [FB18CG07]">
      <seq>tacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96504" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="96993" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98193" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="702" r_length="512" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98194" i_stop="98350" i_length="157">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="709" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717014" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="96993"/>
          <exon e_start="97682" e_stop="98193"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>TACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAA.............................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711563" ref_strand="+" ref_description="SGN-E711563 [FB02BD06]">
      <seq>ccctttagctaaattatcgatagatttattgtttcagatggacgatgagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="96993" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98192" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="701" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711563" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="96993"/>
          <exon e_start="97682" e_stop="98192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA</genome_strand>
        <mrna_strand>CCCTTTAGCTAAATTATCGATAGATTTATTGTTTCAGATGGACGATGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711965" ref_strand="+" ref_description="SGN-E711965 [FB03CA11]">
      <seq>cccactttctagattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttaattacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="96993" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="698" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="714"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711965" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CCCACTTTCTAGATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAATTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713895" ref_strand="+" ref_description="SGN-E713895 [FB09DH02]">
      <seq>cgctctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="96993" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="676" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713895" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CGCTCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716005" ref_strand="+" ref_description="SGN-E716005 [FB15DE02]">
      <seq>cgcactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="96993" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="676" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="686"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716005" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CGCACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732665" ref_strand="+" ref_description="SGN-E732665 [LB02DC01]">
      <seq>cgccctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccctgcaaaatgttgcttttttaagtggcgtaataaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="96993" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98153" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="662" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E732665" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="96993"/>
          <exon e_start="97682" e_stop="98153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAAT</genome_strand>
        <mrna_strand>CGCCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCCTGCAAAATGTTGCTTTTTTAAGTGGCGTAATAAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716975" ref_strand="+" ref_description="SGN-E716975 [FB18CC11]">
      <seq>acactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccataacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgagcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaannnnnaannnannan</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96505" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96805" g_stop="96993" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98206" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="714" r_length="525" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716975" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96805" e_stop="96993"/>
          <exon e_start="97682" e_stop="98206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTT</genome_strand>
        <mrna_strand>ACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCATAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGAGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAANNNNNAANNNANNAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714748" ref_strand="+" ref_description="SGN-E714748 [FB12BC12]">
      <seq>acactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96505" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96805" g_stop="96993" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="697" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="715"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96805" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713996" ref_strand="+" ref_description="SGN-E713996 [FB10AH11]">
      <seq>acactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96505" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96805" g_stop="96993" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="675" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96805" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717176" ref_strand="+" ref_description="SGN-E717176 [FB19BD03]">
      <seq>cccttttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96805" g_stop="96993" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97823" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="331" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717176" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96805" e_stop="96993"/>
          <exon e_start="97682" e_stop="97823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG</genome_strand>
        <mrna_strand>CCCTTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714749" ref_strand="+" ref_description="SGN-E714749 [FB12BD01]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98195" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="702" r_length="514" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98196" i_stop="98350" i_length="155">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98360" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="712" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714749" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98195"/>
          <exon e_start="98351" e_stop="98360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAAGTT</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAATT...........................................................................................................................................................TAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712267" ref_strand="+" ref_description="SGN-E712267 [FB04BE07]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="704" r_length="516" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98198" i_stop="98350" i_length="153">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="711" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712267" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA.........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712339" ref_strand="+" ref_description="SGN-E712339 [FB04CC11]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98193" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="700" r_length="512" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98194" i_stop="98350" i_length="157">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="707" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712339" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98193"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAA.............................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715901" ref_strand="+" ref_description="SGN-E715901 [FB15CD02]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98193" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="700" r_length="512" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98194" i_stop="98350" i_length="157">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="707" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715901" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98193"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAA.............................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713603" ref_strand="+" ref_description="SGN-E713603 [FB09AD06]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="702" r_length="514" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713603" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACAC-AA-ACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712005" ref_strand="+" ref_description="SGN-E712005 [FB03CE04]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctctctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="695" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="711"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712005" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTC-TCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715246" ref_strand="+" ref_description="SGN-E715246 [FB13DA04]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="696" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="712"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715283" ref_strand="+" ref_description="SGN-E715283 [FB13DD05]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaaaaantccccgggggggggccgggaccccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="696" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="721"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715995" ref_strand="+" ref_description="SGN-E715995 [FB15DD03]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="696" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="713"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716187" ref_strand="+" ref_description="SGN-E716187 [FB16BD11]">
      <seq>cactttcataaattatcgatagatttattgttacatatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgccaactacgaaaaagaaatcgaacaccataaacatctcgagcaaatccgaaaacttggcactgttgctgccggtgcctacgccttgcatgacaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatacaggaagagatagcagcagctgctgcaggtggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattgtacttacattgttaatattcgaggaatttccatatttgggataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatgtagtgtgatattataaatggatcgagttaaaaaaaaaaagctgaagtcaaaatatattttaccattctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98187" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="695" r_length="506" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716187" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTC-TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCT</genome_strand>
        <mrna_strand>CACTTTCATAAATTATCGATAGATTTATTGTTACATATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGCCAACTACGAAAAAGAAATCGAACACCATAAACATCTCGAGCAAATCCGAAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATACAGGAAGAGATAGCAGCAGCTGCTGCAGGTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTGTACTTACATTGTTAATATTCGAGGAATTTCCATATTTGGGATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATGTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAAAGCTGAAGTCAAAATATATTTTACCATTCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713640" ref_strand="+" ref_description="SGN-E713640 [FB09AG10]">
      <seq>cgctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="693" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713640" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>CGCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713670" ref_strand="+" ref_description="SGN-E713670 [FB09BB08]">
      <seq>cattttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98184" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="690" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713670" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</genome_strand>
        <mrna_strand>CATTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAG-AAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713543" ref_strand="+" ref_description="SGN-E713543 [FB08DF12]">
      <seq>ccctttctaaattatcgatagatttattgtttcagatggaggccgagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="674" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="685"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713543" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CCCTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGCCGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713390" ref_strand="+" ref_description="SGN-E713390 [FB08CA06]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="674" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="692"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714677" ref_strand="+" ref_description="SGN-E714677 [FB12AE06]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="674" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="692"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715550" ref_strand="+" ref_description="SGN-E715550 [FB14CD12]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98165" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="672" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGT</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715136" ref_strand="+" ref_description="SGN-E715136 [FB13BG09]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttcccaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98155" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="662" r_length="474" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715136" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCCAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723668" ref_strand="+" ref_description="SGN-E723668 [FC21BB08]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaaatgttgctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98134" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="642" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723668" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGT-AAAATGTTGCTTTTTT</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAAATGTTGCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746944" ref_strand="+" ref_description="SGN-E746944 [GI|47104338]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98085" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="592" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="606"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E746944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337895" ref_strand="+" ref_description="SGN-E337895 [cTOE-14-M4]">
      <seq>cactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96806" g_stop="96993" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98038" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="545" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E337895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96806" e_stop="96993"/>
          <exon e_start="97682" e_stop="98038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGT</genome_strand>
        <mrna_strand>CACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715840" ref_strand="+" ref_description="SGN-E715840 [FB15BF09]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98168" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="674" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98169" i_stop="98350" i_length="182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="681" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98168"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAA......................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712312" ref_strand="+" ref_description="SGN-E712312 [FB04CA05]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="703" r_length="516" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712312" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713412" ref_strand="+" ref_description="SGN-E713412 [FB08CC05]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98191" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="697" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713412" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAT</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712635" ref_strand="+" ref_description="SGN-E712635 [FB05BF01]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="673" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="689"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711610" ref_strand="+" ref_description="SGN-E711610 [FB02BH08]">
      <seq>cgtttatagattatcgatagatttattgtttcagatggaggacgagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96509" stop="98397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98096" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="602" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="613"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711610" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCA</genome_strand>
        <mrna_strand>CGTTTATAGATTATCGATAGATTTATTGTTTCAGATGGAGGACGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249005" ref_strand="+" ref_description="SGN-E249005 [cLEF-49-K15]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaagatgtattgtgatttccaaaatgatcatgtgtgttttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98085" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="591" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E249005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAAGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369656" ref_strand="+" ref_description="SGN-E369656 [TUS-25-J10]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98085" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="591" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="639"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E369656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345085" ref_strand="+" ref_description="SGN-E345085 [cTOF-22-I18]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98005" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="511" r_length="324" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="554"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E345085" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="98005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAA</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTNNNNAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330689" ref_strand="+" ref_description="SGN-E330689 [cTOD-8-M21]">
      <seq>actttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96507" stop="98295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96807" g_stop="96993" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97995" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="501" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E330689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96807" e_stop="96993"/>
          <exon e_start="97682" e_stop="97995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAA</genome_strand>
        <mrna_strand>ACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713396" ref_strand="+" ref_description="SGN-E713396 [FB08CB01]">
      <seq>ctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98198" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="703" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713396" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATG</genome_strand>
        <mrna_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712277" ref_strand="+" ref_description="SGN-E712277 [FB04BF06]">
      <seq>ctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98190" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="695" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAA</genome_strand>
        <mrna_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716798" ref_strand="+" ref_description="SGN-E716798 [FB18AC06]">
      <seq>ggttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaannnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96510" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="694" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="717"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716798" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>GGTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714188" ref_strand="+" ref_description="SGN-E714188 [FB10DA10]">
      <seq>ctttttaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgataaaaaagatgccaagaaagaagaaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="673" r_length="487" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714188" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG-AAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTTTTTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGATAAAAAAGATGCCAAGAAAGAAGAAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711976" ref_strand="+" ref_description="SGN-E711976 [FB03CB10]">
      <seq>ctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="672" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706760" ref_strand="+" ref_description="SGN-E706760 [FA30DD07]">
      <seq>ctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctaannnnnaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98163" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="668" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="717"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E706760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTA</genome_strand>
        <mrna_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366496" ref_strand="+" ref_description="SGN-E366496 [cLPT-13-M12]">
      <seq>ctttctaaattatcgacagattgattgtttcagatggaggaggagaaacaccaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactatgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggagcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatatttgtggaatttccatatttggtataaagtgttgtcgtgtcatcttatcatatatcgngtataataacaataaatttagtgtaatattataacggatcgaattaaaaaaggagccgaagtaaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgattttcaaaaagatcatgtgtgtttttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98088" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="597" r_length="408" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E366496" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAG-AA-A-CACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTG-T-T-GTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTT</genome_strand>
        <mrna_strand>CTTTCTAAATTATCGACAGATTGATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTATGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGAGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTTGTGGAATTTCCATATTTGGTATAAAGTGTTGTCGTGTCATCTTATCATATATCGNGTATAATAACAATAAATTTAGTGTAATATTAT-AACGGATCGAATT--AAAAAAGGAGCCGAAGTAAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTTCAAAAAGATCATGTGTGTTTTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272132" ref_strand="+" ref_description="SGN-E272132 [cLEN-4-F5]">
      <seq>ctttctaaattattgatagatttatcgtttcacatggaggaggagaaacaccaccaccaccacctgtttcaccacaaggacaaggcggaggagggccccttcgactaccaaaaagaaatcaaacaccatagacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccataacatgcacacaaactcaacatagaggaagagatagcaccctctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagatagaagaaaaaaaagctgaggggggacaccaccatctattctaaattggtattttagttacattattaatattcgtggaatttccatatatggtataagtgttgagtcatcttatcatatatcgtgcataataacaatcaattcagtgtgatattataaatggatcgagttcaaaaaaaagagcataagtcaaaatatattttaccaatctcgagtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98077" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="582" r_length="396" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E272132" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGT</genome_strand>
        <mrna_strand>CTTTCTAAATTATTGATAGATTTATCGTTTCACATGGAGGAGGAGAAACACCACCACCACCACCTGTTTCACCACAAGGACAAGGCGGAGGAGGGCCCCTTCGACTACCAAAAAGAAATCAAACACCATAGACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCATAACATGCACACAAACTCAACATAGAGGAAGAGATAGCACCCTCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGATAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTATTCTAAATTGGTATTTTAGTTACATTATTAATATTCGTGGAATTTCCATATATGGTATAAGTGTTGAGTCATCTTATCATATATCGTGCATAATAACAATCAATTCAGTGTGATATTATAAATGGATCGAGTTCAAAAAAAAGAGCATAAGTCAAAATATATTTTACCAATCTCGAGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230657" ref_strand="+" ref_description="SGN-E230657 [cLEL-35-C8](-)">
      <seq>ggcaccagattatcgatagatttattgtttcagatggaggaggagaaacnanccanncccccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacncaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97833" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="339" r_length="152" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E230657" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="97833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAAC-ACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGC</genome_strand>
        <mrna_strand>GGCACCAGATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACNANCCANNCCCCCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACNCAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724600" ref_strand="+" ref_description="SGN-E724600 [FC24CD10]">
      <seq>ctttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttggtacgttgatataatcttaccttatatatataaacgttattatcgattatttatacaaatcattttcttttattcaaattacgatcaaaatcatttaagagtttttctaccgggaacatccgattagtcaagattttcatcggagagtttgaatatattgattcctaataaaatgattttatttcctcgattcatgccaaaaatctataattaaggacggaagagtagccaattatttatttaatataatttaattccttttttccttttaaatttttagtttaatttcataatatatgtaaggaaggggtgtgaaaaatttaaagaagataaacagagaagggatggttttatttgcgagtaaaagagtttattttctatctaaacacgtttacactaatttcacattaagttcacctaattatagtaactctctatcatctatacaaaaatagcgtaataataaaaattgttctacaacttctaactcttcaattaaaaaaaaaacaacatatagaatatcgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="97821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="97521" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="97521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGT</genome_strand>
        <mrna_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744522" ref_strand="+" ref_description="SGN-E744522 [GI|170375]">
      <seq>cggaaaaaaaaaaaaaaaaaaaaaaagctgaggggggacaccaccatctcttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaataatgatgtttttttttttaaaaaaaaaaaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96506" stop="98512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96809" g_stop="96993" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="234" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98211" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="766" r_length="532" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="778"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E744522" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96809" e_stop="96993"/>
          <exon e_start="97682" e_stop="98211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG--AAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTA</genome_strand>
        <mrna_strand>CTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711092" ref_strand="+" ref_description="SGN-E711092 [FB01AA05]">
      <seq>tttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96509" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96809" g_stop="96993" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="671" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="693"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96809" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713457" ref_strand="+" ref_description="SGN-E713457 [FB08CG07]">
      <seq>tttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96509" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96809" g_stop="96993" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="671" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96809" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714354" ref_strand="+" ref_description="SGN-E714354 [FB11AH06]">
      <seq>tttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96509" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96809" g_stop="96993" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="671" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96809" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716702" ref_strand="+" ref_description="SGN-E716702 [FB17DB12]">
      <seq>tttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaantttctgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96509" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96809" g_stop="96993" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="671" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="712"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96809" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716361" ref_strand="+" ref_description="SGN-E716361 [FB16DD04]">
      <seq>ctctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96511" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="700" r_length="516" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716361" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>CTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715598" ref_strand="+" ref_description="SGN-E715598 [FB14DA02]">
      <seq>ttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctanntannaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96510" stop="98492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98192" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="695" r_length="511" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="709"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715598" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="98192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA</genome_strand>
        <mrna_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTANNTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711590" ref_strand="+" ref_description="SGN-E711590 [FB02BF11]">
      <seq>ccctatatgatcgatagatttattgtttcagatggaggaggacaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcacaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="671" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="682"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711590" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCA-AACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CCCTATATGATCGATAGATTTATTGTTTCAGATGGAGGAGGACAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCACAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713321" ref_strand="+" ref_description="SGN-E713321 [FB08BC09]">
      <seq>ttctaattatcgatatatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96510" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="669" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="683"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713321" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TTCTA-ATTATCGATATATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715658" ref_strand="+" ref_description="SGN-E715658 [FB14DF07]">
      <seq>ctctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96511" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="670" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="681"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715658" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716327" ref_strand="+" ref_description="SGN-E716327 [FB16DA03]">
      <seq>ctctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96511" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="670" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716327" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341715" ref_strand="+" ref_description="SGN-E341715 [cTOF-9-B9]">
      <seq>ttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatntttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgngcataataacaataaatttagtgtgatattataaatggatcggagtttaaaaaaaagagcaaaagtcaaaatatattttaccaatcctcgggtgatgtaaagaaagatgtattggtgatttccaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96510" stop="98368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98068" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="574" r_length="390" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E341715" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="98068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATC-GAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAAT-CTCGTGTGATGTAAAGAAGGATGTATT-GTGATTTCCAAAATG</genome_strand>
        <mrna_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATNTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGNGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGGAGTTTAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCCTCGGGTGATGTAAAGAAAGATGTATTGGTGATTTCCAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715074" ref_strand="+" ref_description="SGN-E715074 [FB13BA08]">
      <seq>ttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96510" stop="98238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96810" g_stop="96993" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97933" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="436" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="446"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96810" e_stop="96993"/>
          <exon e_start="97682" e_stop="97933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATC</genome_strand>
        <mrna_strand>TTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712033" ref_strand="+" ref_description="SGN-E712033 [FB03CG11]">
      <seq>tctaaattatcgacagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96511" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96811" g_stop="96993" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="669" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="683"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712033" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96811" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TCTAAATTATCGACAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714629" ref_strand="+" ref_description="SGN-E714629 [FB12AA03]">
      <seq>tctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96511" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96811" g_stop="96993" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="669" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96811" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>TCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271231" ref_strand="+" ref_description="SGN-E271231 [cLEM-5-I6]">
      <seq>tctaaattatcgatagatttattgtttcagatggaggaggagaaacagcaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaagatgtattgtgatttccaaaatgatcatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96511" stop="98378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96811" g_stop="96993" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98078" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="580" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E271231" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96811" e_stop="96993"/>
          <exon e_start="97682" e_stop="98078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTG</genome_strand>
        <mrna_strand>TCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACAGCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAAGATGTATTGTGATTTCCAAAATGATCATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723220" ref_strand="+" ref_description="SGN-E723220 [FC19DC03]">
      <seq>tctaaattatcgatagatttattgtttcaaatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaagaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgaaaaacatgaggcaaaaaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96511" stop="98237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96811" g_stop="96993" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97937" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="439" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723220" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96811" e_stop="96993"/>
          <exon e_start="97682" e_stop="97937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATAT</genome_strand>
        <mrna_strand>TCTAAATTATCGATAGATTTATTGTTTCAAATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAGAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAAAACATGAGGCAAAAAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393703" ref_strand="+" ref_description="SGN-E393703 [TUS-42-G2]">
      <seq>tcttttttatcgatagatttattgtttcaaatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactactaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccacaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcaattggggcaggtggatttgtattccctgttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96517" stop="98090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96811" g_stop="96993" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97787" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="289" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E393703" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96811" e_stop="96993"/>
          <exon e_start="97682" e_stop="97787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCC</genome_strand>
        <mrna_strand>TCTTTTTTATCGATAGATTTATTGTTTCAAATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACTAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCACAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAATTGGGGCAGGTGGATTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713900" ref_strand="+" ref_description="SGN-E713900 [FB09DH08]">
      <seq>ctaaattatcgatagatttattgtttcagatagaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="698" r_length="516" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98198" i_stop="98350" i_length="153">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="705" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713900" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATAGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA.........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713775" ref_strand="+" ref_description="SGN-E713775 [FB09CE04]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgtttcaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98195" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="696" r_length="514" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98196" i_stop="98350" i_length="155">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="703" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713775" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98195"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTTCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAA...........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712580" ref_strand="+" ref_description="SGN-E712580 [FB05BA03]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98195" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="696" r_length="514" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98196" i_stop="98350" i_length="155">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="703" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712580" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98195"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAA...........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715867" ref_strand="+" ref_description="SGN-E715867 [FB15CA02]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98168" i_stop="98350" i_length="183">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="675" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA.......................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713424" ref_strand="+" ref_description="SGN-E713424 [FB08CD05]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="698" r_length="516" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713424" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397836" ref_strand="+" ref_description="SGN-E397836 [TUS-24-H16]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="690" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="734"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E397836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712228" ref_strand="+" ref_description="SGN-E712228 [FB04BA12]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="690" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="702"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714388" ref_strand="+" ref_description="SGN-E714388 [FB11BC04]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="690" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="704"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747592" ref_strand="+" ref_description="SGN-E747592 [GI|3661617]">
      <seq>gcggccgcgtcgaccgcggccgcgtcgacctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="211" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="719" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="740"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E747592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715875" ref_strand="+" ref_description="SGN-E715875 [FB15CA10]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98188" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="689" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713054" ref_strand="+" ref_description="SGN-E713054 [FB06CD06]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="687" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714364" ref_strand="+" ref_description="SGN-E714364 [FB11BA04]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98169" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="670" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714364" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAAT</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714711" ref_strand="+" ref_description="SGN-E714711 [FB12AH08]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="665" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="677"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714711" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGC---ATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715662" ref_strand="+" ref_description="SGN-E715662 [FB14DF11]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgggttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="687"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715662" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGGGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705139" ref_strand="+" ref_description="SGN-E705139 [FA26BB05]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E705139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705316" ref_strand="+" ref_description="SGN-E705316 [FA26DB05]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="686"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E705316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712908" ref_strand="+" ref_description="SGN-E712908 [FB06AF06]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaanaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713223" ref_strand="+" ref_description="SGN-E713223 [FB08AC04]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713316" ref_strand="+" ref_description="SGN-E713316 [FB08BC04]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="680"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714278" ref_strand="+" ref_description="SGN-E714278 [FB11AA05]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714717" ref_strand="+" ref_description="SGN-E714717 [FB12BA02]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgannnanaaaaaaaaaaaaaaaaaaaaaaanaaaanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="701"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716217" ref_strand="+" ref_description="SGN-E716217 [FB16BG06]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="680"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716885" ref_strand="+" ref_description="SGN-E716885 [FB18BC07]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="668" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="680"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716359" ref_strand="+" ref_description="SGN-E716359 [FB16DD02]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98096" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="597" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="608"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273917" ref_strand="+" ref_description="SGN-E273917 [cLEN-7-H7]">
      <seq>ctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96512" stop="98340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96993" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98040" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="541" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E273917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96993"/>
          <exon e_start="97682" e_stop="98040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAA</genome_strand>
        <mrna_strand>CTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713634" ref_strand="+" ref_description="SGN-E713634 [FB09AG04]">
      <seq>tatattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96513" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96813" g_stop="96993" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98191" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="691" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713634" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96813" e_stop="96993"/>
          <exon e_start="97682" e_stop="98191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAT</genome_strand>
        <mrna_strand>TATATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247512" ref_strand="+" ref_description="SGN-E247512 [cLEF-42-M15]">
      <seq>taaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96513" stop="98438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96813" g_stop="96993" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98138" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="638" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E247512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96813" e_stop="96993"/>
          <exon e_start="97682" e_stop="98138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGT</genome_strand>
        <mrna_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257975" ref_strand="+" ref_description="SGN-E257975 [cLEG-48-D13]">
      <seq>taaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtggtttggactttcctcgccatcttctgttgaattaccttggaaaatggtgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96513" stop="98433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96813" g_stop="96993" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98133" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="633" r_length="452" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E257975" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96813" e_stop="96993"/>
          <exon e_start="97682" e_stop="98133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTT</genome_strand>
        <mrna_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGGTTTGGACTTTCCTCGCCATCTTCTGTTGAATTACCTTGGAAAATGGTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245633" ref_strand="+" ref_description="SGN-E245633 [cLEF-43-P9]">
      <seq>taaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96513" stop="98385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96813" g_stop="96993" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98087" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="587" r_length="406" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E245633" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96813" e_stop="96993"/>
          <exon e_start="97682" e_stop="98087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACT</genome_strand>
        <mrna_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247215" ref_strand="+" ref_description="SGN-E247215 [cLEF-46-I12]">
      <seq>taaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaatatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96513" stop="98191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96813" g_stop="96993" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97891" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="389" r_length="208" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E247215" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96813" e_stop="96993"/>
          <exon e_start="97682" e_stop="97891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTC</genome_strand>
        <mrna_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAG--AAAATATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258035" ref_strand="+" ref_description="SGN-E258035 [cLEG-48-E13]">
      <seq>taaattatcgatagatttattgattcagatggatgaggagaaacgccaccaccaccacctgttccaccagcaatgacaatgcggaagatggccccgtcaactactaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96513" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96813" g_stop="96993" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97810" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="311" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E258035" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96813" e_stop="96993"/>
          <exon e_start="97682" e_stop="97810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCA-CAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGAT</genome_strand>
        <mrna_strand>TAAATTATCGATAGATTTATTGATTCAGATGGATGAGGAGAAACGCCACCACCACCACCTGTTCCACCAGCAATGACAATGCGGAAGATGGCCCCGTCAACTACTAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711806" ref_strand="+" ref_description="SGN-E711806 [FB03AB08]">
      <seq>catttatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96515" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96814" g_stop="96993" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="666" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711806" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96814" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CATTTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700556" ref_strand="+" ref_description="SGN-E700556 [FA13BH02]">
      <seq>aaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96514" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96814" g_stop="96993" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="666" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="676"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E700556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96814" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723625" ref_strand="+" ref_description="SGN-E723625 [FC21AD04]">
      <seq>aaattatcgatagatttattgtttcaaatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcggggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgggcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaaaaaggatgtattgtgatttccaaaatgatcatgtgtgttttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96514" stop="98387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96814" g_stop="96993" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98087" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="586" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723625" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96814" e_stop="96993"/>
          <exon e_start="97682" e_stop="98087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACT</genome_strand>
        <mrna_strand>AAATTATCGATAGATTTATTGTTTCAAATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGGGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGGGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAAAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713299" ref_strand="+" ref_description="SGN-E713299 [FB08BA11]">
      <seq>aattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96515" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96815" g_stop="96993" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="687" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="699"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96815" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>AATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714531" ref_strand="+" ref_description="SGN-E714531 [FB11CH03]">
      <seq>aattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96515" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96815" g_stop="96993" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="687" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="704"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96815" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>AATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249033" ref_strand="+" ref_description="SGN-E249033 [cLEF-49-E22]">
      <seq>aattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96515" stop="98386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96815" g_stop="96993" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98086" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="584" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E249033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96815" e_stop="96993"/>
          <exon e_start="97682" e_stop="98086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGAC</genome_strand>
        <mrna_strand>AATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714040" ref_strand="+" ref_description="SGN-E714040 [FB10BD08]">
      <seq>attatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96516" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96816" g_stop="96993" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="665" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714040" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96816" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTT-AAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712119" ref_strand="+" ref_description="SGN-E712119 [FB03DG11]">
      <seq>attatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96516" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96816" g_stop="96993" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="664" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96816" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716225" ref_strand="+" ref_description="SGN-E716225 [FB16BH02]">
      <seq>attatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannncccttgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96516" stop="98467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96816" g_stop="96993" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="664" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="713"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96816" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721283" ref_strand="+" ref_description="SGN-E721283 [FC13BD08]">
      <seq>attatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccaaaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaaaaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96516" stop="98458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96816" g_stop="96993" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98158" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="655" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E721283" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96816" e_stop="96993"/>
          <exon e_start="97682" e_stop="98158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTT</genome_strand>
        <mrna_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAAAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAAAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716773" ref_strand="+" ref_description="SGN-E716773 [FB18AA01]">
      <seq>attatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96516" stop="98390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96816" g_stop="96993" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98090" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="587" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="610"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96816" e_stop="96993"/>
          <exon e_start="97682" e_stop="98090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTC</genome_strand>
        <mrna_strand>ATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335823" ref_strand="+" ref_description="SGN-E335823 [cTOE-6-I14]">
      <seq>ttatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96517" stop="98282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96817" g_stop="96993" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97982" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="478" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E335823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96817" e_stop="96993"/>
          <exon e_start="97682" e_stop="97982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGAT</genome_strand>
        <mrna_strand>TTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246725" ref_strand="+" ref_description="SGN-E246725 [cLEF-45-F23]">
      <seq>tatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgaatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96518" stop="98469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96818" g_stop="96993" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98169" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="665" r_length="489" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E246725" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96818" e_stop="96993"/>
          <exon e_start="97682" e_stop="98169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATG-ATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAAT</genome_strand>
        <mrna_strand>TATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGAATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711852" ref_strand="+" ref_description="SGN-E711852 [FB03AG05]">
      <seq>cgtctatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96520" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96818" g_stop="96993" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="662" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711852" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96818" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CGTCTATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714595" ref_strand="+" ref_description="SGN-E714595 [FB11DE11]">
      <seq>cattgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96519" stop="98463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96818" g_stop="96993" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98163" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="658" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714595" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96818" e_stop="96993"/>
          <exon e_start="97682" e_stop="98163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTA</genome_strand>
        <mrna_strand>CATTGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715019" ref_strand="+" ref_description="SGN-E715019 [FB13AD07]">
      <seq>atcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaannnnnnnnnnnnnnanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96519" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96819" g_stop="96993" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98194" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="688" r_length="513" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715019" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96819" e_stop="96993"/>
          <exon e_start="97682" e_stop="98194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAAT</genome_strand>
        <mrna_strand>ATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAANNNNNNNNNNNNNNANAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715077" ref_strand="+" ref_description="SGN-E715077 [FB13BA11]">
      <seq>atcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaananaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96519" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96819" g_stop="96993" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="661" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="691"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96819" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230589" ref_strand="+" ref_description="SGN-E230589 [cLEL-35-C8](-)">
      <seq>atcgatagatttattgtttcagatggaggaggagaaacnnccnnncccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaaccccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96519" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96819" g_stop="96993" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97833" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="328" r_length="152" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E230589" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96819" e_stop="96993"/>
          <exon e_start="97682" e_stop="97833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAAC-ACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGC</genome_strand>
        <mrna_strand>ATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACNNCCNNNCCCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACCCCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251894" ref_strand="+" ref_description="SGN-E251894 [cLEG-14-C1]">
      <seq>tcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96520" stop="98433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96820" g_stop="96993" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98133" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="626" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E251894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96820" e_stop="96993"/>
          <exon e_start="97682" e_stop="98133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTT</genome_strand>
        <mrna_strand>TCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276029" ref_strand="+" ref_description="SGN-E276029 [cLEN-12-K19]">
      <seq>tcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96520" stop="98415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96820" g_stop="96993" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98115" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="608" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E276029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96820" e_stop="96993"/>
          <exon e_start="97682" e_stop="98115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCT</genome_strand>
        <mrna_strand>TCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555723" ref_strand="+" ref_description="SGN-E555723 [cTSD-1-D17]">
      <seq>cgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctnnnanaaaaaaaaaaaaaaaaaaaannnnnnnnnncctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96521" stop="98487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96821" g_stop="96993" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="681" r_length="508" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="704"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E555723" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96821" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554683" ref_strand="+" ref_description="SGN-E554683 [cTSC-5-B18]">
      <seq>cgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96521" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96821" g_stop="96993" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="681" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="703"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E554683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96821" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705982" ref_strand="+" ref_description="SGN-E705982 [FA28CG01]">
      <seq>cgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96521" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96821" g_stop="96993" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="678" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E705982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96821" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>CGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717187" ref_strand="+" ref_description="SGN-E717187 [FB19BE05]">
      <seq>gatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96522" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96822" g_stop="96993" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="658" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="676"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96822" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719189" ref_strand="+" ref_description="SGN-E719189 [FC07AB04]">
      <seq>atagatttattgtttcagatggaggaccttaaaaagcaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96523" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96823" g_stop="96993" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="658" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="679"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E719189" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96823" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAA-AAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATAGATTTATTGTTTCAGATGGAGGACCTTAAAAAGCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707900" ref_strand="+" ref_description="SGN-E707900 [FA34BB06]">
      <seq>cagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96525" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96824" g_stop="96993" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="656" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="672"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E707900" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96824" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711690" ref_strand="+" ref_description="SGN-E711690 [FB02CG10]">
      <seq>cgatttattgtttcagatggaggaggagaaacaccaccacccccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggaanaaaaaaaaaaaaaaaaaaaaaaaccttaaaaaaaccccttttaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96526" stop="98472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96825" g_stop="96993" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98171" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="659" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="685"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711690" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96825" e_stop="96993"/>
          <exon e_start="97682" e_stop="98171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGG</genome_strand>
        <mrna_strand>CGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCCCCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714628" ref_strand="+" ref_description="SGN-E714628 [FB12AA01]">
      <seq>agatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96525" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96825" g_stop="96993" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="655" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96825" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247048" ref_strand="+" ref_description="SGN-E247048 [cLEF-41-F21]">
      <seq>agatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96525" stop="98386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96825" g_stop="96993" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98086" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="574" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E247048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96825" e_stop="96993"/>
          <exon e_start="97682" e_stop="98086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGAC</genome_strand>
        <mrna_strand>AGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715675" ref_strand="+" ref_description="SGN-E715675 [FB14DH02]">
      <seq>gatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96526" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96826" g_stop="96993" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="654" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="665"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96826" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714046" ref_strand="+" ref_description="SGN-E714046 [FB10BE02]">
      <seq>catatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaatttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaaannangggggggaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96525" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="170" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="678" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="701"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714046" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAATTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720167" ref_strand="+" ref_description="SGN-E720167 [FC10AA11]">
      <seq>gggcgattggcggccaaccggccgaattataaacaccatacactccattaaaaagcgatagatttattgtttcagatggaggaggacccttaaaaaaaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagataaaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96492" stop="98485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="228" r_length="167" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98185" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="732" r_length="504" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720167" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="98185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGACCCTTAAAAAAACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAAAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714559" ref_strand="+" ref_description="SGN-E714559 [FB11DB08]">
      <seq>atttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacgaggacaaggcggaggagggccccgtcgactactaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccacaacatgcacacaaacacaagatagaggaagagatagcagcaactgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttactgtgatattataaatggatcgagttaaaaaaaaggagcaaaagtcaaaatatattttaccaatctcgtgtgatgaaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96527" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="653" r_length="486" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="667"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714559" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACGAGGACAAGGCGGAGGAGGGCCCCGTCGACTACTAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCACAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAACTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTACTGTGATATTATAAATGGATCGAGTTAAAAAAAAGGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGAAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711300" ref_strand="+" ref_description="SGN-E711300 [FB01CE04]">
      <seq>cccattatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96527" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="173" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="659" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="671"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713197" ref_strand="+" ref_description="SGN-E713197 [FB08AA01]">
      <seq>catttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96527" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="168" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="654" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="671"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712880" ref_strand="+" ref_description="SGN-E712880 [FB06AC12]">
      <seq>atttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96527" stop="98277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97976" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="462" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="477"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="97976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAA</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713685" ref_strand="+" ref_description="SGN-E713685 [FB09BD04]">
      <seq>acacgaacccttataatttattgtttcagatggaggaggagaaacaccaccccctccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacaaaaaagaaatccaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatacaggaagagatagcagtagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgctaacacagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgatattttagttacatttttactattcctggaatttccatatttggtataagtgttgtgtcatcttatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96523" stop="98237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="182" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97937" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="438" r_length="256" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713685" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="97937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATAT</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCCCCTCCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACAAAAAAGAAATCCAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATACAGGAAGAGATAGCAGTAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCTAACACAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGATATTTTAGTTACATTTTTACTATTCCTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221809" ref_strand="+" ref_description="SGN-E221809 [cLEL-10-O1](-)">
      <seq>ggcgcgagtatcgatagatttattgtttcagatggaggaggagaaacaccacccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96516" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96827" g_stop="96993" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="185" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97830" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="334" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E221809" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96827" e_stop="96993"/>
          <exon e_start="97682" e_stop="97830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCA-CCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAA</genome_strand>
        <mrna_strand>ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714377" ref_strand="+" ref_description="SGN-E714377 [FB11BB05]">
      <seq>tattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaannnaaaaaaaaaaaaaaaaaaaaaaaaannnnnanangggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96530" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96830" g_stop="96993" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98192" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="675" r_length="511" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="702"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714377" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96830" e_stop="96993"/>
          <exon e_start="97682" e_stop="98192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA</genome_strand>
        <mrna_strand>TATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715920" ref_strand="+" ref_description="SGN-E715920 [FB15CE09]">
      <seq>attgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96531" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96831" g_stop="96993" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98192" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="674" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="687"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96831" e_stop="96993"/>
          <exon e_start="97682" e_stop="98192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA</genome_strand>
        <mrna_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715576" ref_strand="+" ref_description="SGN-E715576 [FB14CG04]">
      <seq>attgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96531" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96831" g_stop="96993" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="671" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="709"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96831" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715620" ref_strand="+" ref_description="SGN-E715620 [FB14DC01]">
      <seq>attgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96531" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96831" g_stop="96993" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="668" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96831" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712430" ref_strand="+" ref_description="SGN-E712430 [FB04DD01]">
      <seq>attgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96531" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96831" g_stop="96993" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="649" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="676"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96831" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714547" ref_strand="+" ref_description="SGN-E714547 [FB11DA08]">
      <seq>attgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96531" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96831" g_stop="96993" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="649" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="673"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96831" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>ATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715734" ref_strand="+" ref_description="SGN-E715734 [FB15AE06]">
      <seq>ccgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96534" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96832" g_stop="96993" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98195" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="676" r_length="514" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715734" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96832" e_stop="96993"/>
          <exon e_start="97682" e_stop="98195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATG</genome_strand>
        <mrna_strand>CCGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712792" ref_strand="+" ref_description="SGN-E712792 [FB05DD02]">
      <seq>gtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96534" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96834" g_stop="96993" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="665" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96834" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>GTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708679" ref_strand="+" ref_description="SGN-E708679 [FA36BH10]">
      <seq>gtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96534" stop="98484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96834" g_stop="96993" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98184" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="663" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E708679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96834" e_stop="96993"/>
          <exon e_start="97682" e_stop="98184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</genome_strand>
        <mrna_strand>GTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713924" ref_strand="+" ref_description="SGN-E713924 [FB10AB09]">
      <seq>gtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96534" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96834" g_stop="96993" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="646" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="659"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96834" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578397" ref_strand="-" ref_description="SGN-E578397 [LE12DD09]">
      <seq>cttcagatggaggaggagaaacaccaccanccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96536" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96835" g_stop="96993" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="646" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E578397" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96835" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGATGGAGGAGGAGAAACACCACCA-CCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTTCAGATGGAGGAGGAGAAACACCACCANCCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248733" ref_strand="+" ref_description="SGN-E248733 [cLEG-5-C15]">
      <seq>ttcagatggatgaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtggtttggacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96536" stop="98389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96836" g_stop="96993" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98089" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="564" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E248733" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96836" e_stop="96993"/>
          <exon e_start="97682" e_stop="98089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTT</genome_strand>
        <mrna_strand>TTCAGATGGATGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAG--AAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGGTTTGGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596391" ref_strand="-" ref_description="SGN-E596391 [39684]">
      <seq>ctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattaaaaaaaaaaaaaaaaaaaaaaaactccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96538" stop="98213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96838" g_stop="96993" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97976" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="450" r_length="297" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="471"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E596391" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596391" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96838" e_stop="96993"/>
          <exon e_start="97682" e_stop="97976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAA</genome_strand>
        <mrna_strand>CTGATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E741023" ref_strand="+" ref_description="SGN-E741023 [GI|68500141]">
      <seq>atggaggaggagaaacaccaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96541" stop="98161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96838" g_stop="96993" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97861" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="336" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E741023" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96838" e_stop="96993"/>
          <exon e_start="97682" e_stop="97861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAGAAACACCACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713653" ref_strand="+" ref_description="SGN-E713653 [FB09AH12]">
      <seq>cgggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96543" stop="98487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98187" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="659" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713653" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="98187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCT</genome_strand>
        <mrna_strand>CGGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714395" ref_strand="+" ref_description="SGN-E714395 [FB11BC12]">
      <seq>ccgtaggaggagaaacaccaccaccaccacctgttccaccacaacgacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgctgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgaaaaatgttgcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96543" stop="98433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98133" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="605" r_length="452" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714395" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="98133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTT</genome_strand>
        <mrna_strand>CCGTAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAACGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGCTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGAAAAATGTTGCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603743" ref_strand="+" ref_description="SGN-E603743 [56839]">
      <seq>tttctccatagtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattataaatggatcgagttgaaaaaagagcgaggtctaaacatattttatcctgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="178" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98023" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="519" r_length="341" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E603743" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="98023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACC</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTATAAATGGATCGAGTT--GAAAAAAGAGC-GAGGTCTAAACATATTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598830" ref_strand="+" ref_description="SGN-E598830 [51804]">
      <seq>ctccatagtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattataaatggatcgagttgaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="175" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98005" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="501" r_length="326" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="518"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E598830" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="98005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTATAAATGGATCGAGTTGAAAAAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572254" ref_strand="+" ref_description="SGN-E572254 [31379]">
      <seq>taagaatcgatctgatggaggaggagaaacaccaccaccacctggttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattataaatggatcgagttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="165" r_length="151" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98004" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="490" r_length="325" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E572254" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="98004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAGAAACACCACCACCA-C-CTGGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTATAAATGGATCGAGTTGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600588" ref_strand="+" ref_description="SGN-E600588 [53603]">
      <seq>ctccatagtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccagtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcattccatgaacatcatgagaaaaaagaagccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagcgttgtcgtgtttttctatcgtactgtgtacaataacaataagttcagtgtgatattataaacggatcgagttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="175" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98003" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="499" r_length="324" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E600588" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="98003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCAGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATGAGAAAAAAGAAGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGCGTTGTCGTGTTTTTCTATCGTACTGTGTACAATAACAATAAGTTCAGTGTGATATTATAAACGGATCGAGTTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565136" ref_strand="+" ref_description="SGN-E565136 [1494]">
      <seq>gtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttggcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattataaatggatcgagttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="168" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97999" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="489" r_length="321" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E565136" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAG-CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGA</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTATAAATGGATCGAGTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598951" ref_strand="-" ref_description="SGN-E598951 [51928]">
      <seq>atagtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattataaatggatcgagttgaaaaaagagcgaggtctaaacataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="171" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97999" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="491" r_length="320" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E598951" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598951" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGA</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTATAAATGGATCGAGTTGAAAAAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336626" ref_strand="+" ref_description="SGN-E336626 [cTOE-4-F23]">
      <seq>atggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggcggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgatgctgccggagcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaagtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaatagttattttagttacatttttaatattcgaggaatatccatatttggtataagtggtgtgtcatcttatcatatatcgtgcataataacaataaaattagtgtgatattataaatggatcgagttaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96541" stop="98298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97998" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="470" r_length="317" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E336626" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAG</genome_strand>
        <mrna_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGCGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGATGCTGCCGGAGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAAGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATAGTTATTTTAGTTACATTTTTAATATTCGAGGAATATCCATATTTGGTATAAGTGGTGTGTCATCTTATCATATATCGTGCATAATAACAATAAAATTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337445" ref_strand="+" ref_description="SGN-E337445 [cTOE-11-C16]">
      <seq>atggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttaatgtgatattataaatggatcgagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96541" stop="98297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97997" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="469" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E337445" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAATGTGATATTATAAATGGATCGAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593100" ref_strand="-" ref_description="SGN-E593100 [36322]">
      <seq>ttctccatagtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccagtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcattccatgaacatcatgagaaaaaagaagccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagcgttgtcgtgtttttctatcgtactgtgtacaataacaataagttcagtgtgatattataaacggatcgagttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="177" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97996" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="494" r_length="317" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E593100" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593100" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCAGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATGAGAAAAAAGAAGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGCGTTGTCGTGTTTTTCTATCGTACTGTGTACAATAACAATAAGTTCAGTGTGATATTATAAACGGATCGAGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603797" ref_strand="+" ref_description="SGN-E603797 [56895]">
      <seq>cataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattataaatggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="166" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97984" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="471" r_length="305" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E603797" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCG</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTATAAATGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585764" ref_strand="+" ref_description="SGN-E585764 [68227]">
      <seq>taagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccancagctcttctaaattgtnattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttagtgtgatattataaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="164" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97981" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="466" r_length="302" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E585764" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGA</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCANCAGCTCTTCTAAATTGTNATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAGTGTGATATTATAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585530" ref_strand="+" ref_description="SGN-E585530 [67991]">
      <seq>ctctatagtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccagtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcattccatgaacatcatgagaaaaaagaagccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagcgttgtcgtgtttttctatcgtactgtgtacaataacaataagttcagtgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="175" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97969" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="465" r_length="290" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E585530" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGAT</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCAGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATGAGAAAAAAGAAGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGCGTTGTCGTGTTTTTCTATCGTACTGTGTACAATAACAATAAGTTCAGTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580354" ref_strand="+" ref_description="SGN-E580354 [5597]">
      <seq>tgcaggtttctccatagtcataagaatcgatctgatggaggaggagaaacaccaccagcatctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacaccaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97870" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="373" r_length="189" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E580354" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATT</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCAGCATCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACCAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E741088" ref_strand="+" ref_description="SGN-E741088 [GI|68500147]">
      <seq>atggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgaacatcatgagaaaaaagatgccaaaaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96541" stop="98161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97861" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="333" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E741088" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATGAGAAAAAAGATGCCAAAAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745063" ref_strand="+" ref_description="SGN-E745063 [GI|68500143]">
      <seq>atggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96541" stop="98161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97861" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="333" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E745063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAA</genome_strand>
        <mrna_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585103" ref_strand="+" ref_description="SGN-E585103 [66821]">
      <seq>ctccatagtcataagaatcgatctgatggaggaggagaaacaccaccaccacctgttccaccacaaggacaagaaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcagagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcaggtgctgcagttggggcaggtggatttgcactccatgaacatcatgagagaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96537" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96993" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="175" r_length="150" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97810" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="304" r_length="129" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E585103" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96993"/>
          <exon e_start="97682" e_stop="97810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGAT</genome_strand>
        <mrna_strand>ATGGAGGAGGAG-AA-A-CACCACCACCACCTGTTCCACCACAAGGACAAGAAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAGAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGGTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAGAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339594" ref_strand="+" ref_description="SGN-E339594 [cTOE-16-J1]">
      <seq>tggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactaccgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgcccgtgcctaccccttgcatgagaaacatgaggcaaagaaagatccagaacatgccccccaaccaccaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgcccagaaagaagaaaaaaaagctgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96542" stop="98141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96842" g_stop="96993" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97841" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="315" r_length="162" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E339594" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96842" e_stop="96993"/>
          <exon e_start="97682" e_stop="97841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTA-CGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATG-CACACAAACA-CAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGG</genome_strand>
        <mrna_strand>TGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACCGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCCGTGCCTACCCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCCCCCCAACCACCAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCCAGAAAGAAGAAAAAAAAGCTGAGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724525" ref_strand="+" ref_description="SGN-E724525 [FC24BE04]">
      <seq>ggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgaaaaacatgaggcaaagaaagatccaaaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgaaaaatgttgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96543" stop="98432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96843" g_stop="96993" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98132" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="602" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E724525" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96843" e_stop="96993"/>
          <exon e_start="97682" e_stop="98132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTT</genome_strand>
        <mrna_strand>GGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAAAACATGAGGCAAAGAAAGATCCAAAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGAAAAATGTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717332" ref_strand="+" ref_description="SGN-E717332 [FB19DF03]">
      <seq>aggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96545" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96845" g_stop="96993" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98198" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="666" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717332" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96845" e_stop="96993"/>
          <exon e_start="97682" e_stop="98198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATG</genome_strand>
        <mrna_strand>AGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705121" ref_strand="+" ref_description="SGN-E705121 [FA26AH08]">
      <seq>ggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaataaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttgggataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttactgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgcgtgatgcaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96549" stop="98428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96849" g_stop="96993" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98128" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="592" r_length="447" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E705121" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96849" e_stop="96993"/>
          <exon e_start="97682" e_stop="98128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGC</genome_strand>
        <mrna_strand>GGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAATAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGGATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTACTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGCGTGATGCAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744871" ref_strand="+" ref_description="SGN-E744871 [GI|414676]">
      <seq>gagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggcccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctggttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaagtcaaaatatattttaccaatctcgttgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96550" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96850" g_stop="96993" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="627" r_length="482" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="641"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E744871" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96850" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGG-CCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTG--GTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGC-AAAGTCAAAATATATTTTACCAATCTCGT-TGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712799" ref_strand="+" ref_description="SGN-E712799 [FB05DD10]">
      <seq>agaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96551" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96851" g_stop="96993" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="629" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="645"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96851" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458708" ref_strand="+" ref_description="SGN-E458708 [cPRO-7-I15]">
      <seq>gagaaacaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgctggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcattccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagcgttgtcgtgtttttctatcgtaccgtgtacaatacaataagttcagtgtgatattataaatggatcgagttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96552" stop="98297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96852" g_stop="96993" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97999" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="460" r_length="319" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E458708" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96852" e_stop="96993"/>
          <exon e_start="97682" e_stop="97999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGA</genome_strand>
        <mrna_strand>GAGA-AACACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCTGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGCGTTGTCGTGTTTTTCTATCGTACCGTGTACAAT-ACAATAAGTTCAGTGTGATATTATAAATGGATCGAGTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601699" ref_strand="+" ref_description="SGN-E601699 [54743]">
      <seq>gagaaacaccaccaccacctgttccaccacaaggacaaggaggaggagggccccgtcgactacgaaaaagaaaccaaacaccataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagcgttgtcgtgtttttctatcgtactgtgtacaataacaataagttcagtgtgatattataaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96552" stop="98281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96852" g_stop="96993" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97981" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="443" r_length="302" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E601699" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96852" e_stop="96993"/>
          <exon e_start="97682" e_stop="97981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGA</genome_strand>
        <mrna_strand>GAGA-AACACCACCACCACCTGTTCCACCACAAGGACAAGGAGGAGGAGGGCCCCGTCGACTACGAAAAAGAAACCAAACACCATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGCGTTGTCGTGTTTTTCTATCGTACTGTGTACAATAACAATAAGTTCAGTGTGATATTATAAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711619" ref_strand="+" ref_description="SGN-E711619 [FB02CA06]">
      <seq>ccattaaaccaccaccacctgttccaccacaaggacaaggcgcaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96560" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96853" g_stop="96993" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="627" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="642"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711619" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96853" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CCATTAAACCACCACCACCTGTTCCACCACAAGGACAAGGCGCAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248018" ref_strand="+" ref_description="SGN-E248018 [cLEF-47-G8]">
      <seq>aacaccaccaccaccacctgttccaccacaaggacaaggcggaggaggggcccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96554" stop="98386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96854" g_stop="96993" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98086" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="545" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E248018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96854" e_stop="96993"/>
          <exon e_start="97682" e_stop="98086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGAC</genome_strand>
        <mrna_strand>AACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGGCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718630" ref_strand="+" ref_description="SGN-E718630 [FC05BA04]">
      <seq>accaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggtactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96557" stop="98390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96857" g_stop="96993" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98090" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="546" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718630" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96857" e_stop="96993"/>
          <exon e_start="97682" e_stop="98090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTC</genome_strand>
        <mrna_strand>ACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGTACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338772" ref_strand="+" ref_description="SGN-E338772 [cTOE-21-D3]">
      <seq>accaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96557" stop="98191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96857" g_stop="96993" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97891" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="347" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E338772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96857" e_stop="96993"/>
          <exon e_start="97682" e_stop="97891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTC</genome_strand>
        <mrna_strand>ACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711283" ref_strand="+" ref_description="SGN-E711283 [FB01CB07]">
      <seq>cccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctannnnaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96561" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96860" g_stop="96993" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98189" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="642" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="658"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E711283" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96860" e_stop="96993"/>
          <exon e_start="97682" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>CCCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264393" ref_strand="+" ref_description="SGN-E264393 [cLEG-67-I20]">
      <seq>accaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgggcctaataacaataaatttagtgtgatattataaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96560" stop="98282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96860" g_stop="96993" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97982" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="435" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E264393" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96860" e_stop="96993"/>
          <exon e_start="97682" e_stop="97982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGAT</genome_strand>
        <mrna_strand>ACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGGGCCTAATAACAATAAATTTAGTGTGATATTATAAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220110" ref_strand="+" ref_description="SGN-E220110 [cLEL-12-I14](-)">
      <seq>ccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgacaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatcagcatcatgagaaaaaagatgccaaaanttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96567" stop="98118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96867" g_stop="96993" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="277" r_length="150" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E220110" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96867" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>CCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGACAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATCAGCATCATGAGAAAAAAGATGCCAAAANTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216210" ref_strand="+" ref_description="SGN-E216210 [cLEL-13-F6](-)">
      <seq>cctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96570" stop="98110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96870" g_stop="96993" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97830" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="273" r_length="149" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E216210" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96870" e_stop="96993"/>
          <exon e_start="97682" e_stop="97830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAA</genome_strand>
        <mrna_strand>CCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218495" ref_strand="+" ref_description="SGN-E218495 [cLEL-18-A2](-)">
      <seq>ctgttccacctcaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccacgatnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96571" stop="98117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96871" g_stop="96993" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="273" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E218495" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96871" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>CTGTTCCACCTCAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCACGATNAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234144" ref_strand="+" ref_description="SGN-E234144 [cLEL-8-O2](-)">
      <seq>tgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacncaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96572" stop="98122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96872" g_stop="96993" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97822" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="263" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E234144" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96872" e_stop="96993"/>
          <exon e_start="97682" e_stop="97822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAA</genome_strand>
        <mrna_strand>TGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACNCAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229397" ref_strand="+" ref_description="SGN-E229397 [cLEL-4-L7](-)">
      <seq>gttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96573" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96873" g_stop="96993" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="271" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E229397" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96873" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>GTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234236" ref_strand="+" ref_description="SGN-E234236 [cLEL-8-O2](-)">
      <seq>caaggacaagacggaggagggccccgtcggctacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcataaaaaaagagatgccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96582" stop="98122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96882" g_stop="96993" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97822" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="253" r_length="141" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E234236" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96882" e_stop="96993"/>
          <exon e_start="97682" e_stop="97822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAA</genome_strand>
        <mrna_strand>CAAGGACAAGACGGAGGAGGGCCCCGTCGGCTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATAAAAAAAGAGATGCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723229" ref_strand="+" ref_description="SGN-E723229 [FC19DD06]">
      <seq>aaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccaaaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcggggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgggcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaaaaaggatgtattgtgatttccaaaatgatcatgtgggttttggactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96589" stop="98390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96889" g_stop="96993" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98090" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="514" r_length="409" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E723229" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96889" e_stop="96993"/>
          <exon e_start="97682" e_stop="98090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTC</genome_strand>
        <mrna_strand>AAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAAAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGGGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGGGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAAAAGGATGTATTGTGATTTCCAAAATGATCATGTGGGTTTTGGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232526" ref_strand="+" ref_description="SGN-E232526 [cLEL-5-H21](-)">
      <seq>ggcaccagaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatccccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96618" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96910" g_stop="96993" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97830" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="231" r_length="149" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E232526" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96910" e_stop="96993"/>
          <exon e_start="97682" e_stop="97830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAA</genome_strand>
        <mrna_strand>GGC-ACCA-GAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATCCCCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232306" ref_strand="+" ref_description="SGN-E232306 [cLEL-5-H21](-)">
      <seq>ggcaccagaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96618" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96910" g_stop="96993" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97830" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="231" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E232306" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96910" e_stop="96993"/>
          <exon e_start="97682" e_stop="97830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAA</genome_strand>
        <mrna_strand>GGC-ACCA-GAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712649" ref_strand="+" ref_description="SGN-E712649 [FB05BG04]">
      <seq>ctacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96612" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96912" g_stop="96993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="568" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="581"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96912" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715486" ref_strand="+" ref_description="SGN-E715486 [FB14BF12]">
      <seq>aataaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96620" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96920" g_stop="96993" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98192" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="585" r_length="511" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98193" i_stop="98350" i_length="158">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="592" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715486" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96920" e_stop="96993"/>
          <exon e_start="97682" e_stop="98192"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>AATAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAA..............................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229751" ref_strand="+" ref_description="SGN-E229751 [cLEL-4-L7](-)">
      <seq>caaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96627" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96927" g_stop="96993" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="217" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E229751" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96927" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>CAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586640" ref_strand="+" ref_description="SGN-E586640 [75473]">
      <seq>cataaacatcttgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagattgcagcagctgctgcagttggggcaggtggatttgcactccatgaacatcatgagaaaaaagatgccaagaaagaacaaaaaaaagctgaggggggtcaccaccacctcttctaaattgttattttaataagattttaaatacttgttgaatttccattttatgtatggagtgttgtcgtgtttttctatcgtaccgtgtataataacaataagtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96634" stop="98213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96934" g_stop="96993" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97963" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="344" r_length="284" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E586640" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96934" e_stop="96993"/>
          <exon e_start="97682" e_stop="97963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTGTTGT-GTCATCTTATCATATATCGTGCATAATAACAATAAATTTAG</genome_strand>
        <mrna_strand>CATAAACATCTTGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATTGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCACTCCATGAACATCATGAGAAAAAAGATGCCAAGAAAGAACAAAAAAAAGCTGAGGGGGGTCACCACCACCTCTTCTAAATTGTTATTTTAATAAGATTTTAAATACTTGTTGAATTTCCATTTTATGTATGGAGTGTTGTCGTGTTTTTCTATCGTACCGTGTATAATAACAATAAGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715066" ref_strand="+" ref_description="SGN-E715066 [FB13AH12]">
      <seq>caatcatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96637" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96936" g_stop="96993" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="544" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="560"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715066" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96936" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CAATCATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720624" ref_strand="+" ref_description="SGN-E720624 [FC11BD06]">
      <seq>ctcgagcaaatcggtaaactttgcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaaaaaagatccagaacatgcacactaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagggtgatattataaatggatcgagttaaaaaaaaagagcaaaacgtcaaaatatattttaccaatctcgtgtgatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96643" stop="98340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96943" g_stop="96993" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98040" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="411" r_length="360" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720624" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96943" e_stop="96993"/>
          <exon e_start="97682" e_stop="98040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAA-GTCAAAATATATTTTACCAATCTCGTGTGATGTAA</genome_strand>
        <mrna_strand>CTCGAGCAAATCGGTAAACTTTGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAAAAAGATCCAGAACATGCACACTAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGGGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAACGTCAAAATATATTTTACCAATCTCGTGTGATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712425" ref_strand="+" ref_description="SGN-E712425 [FB04DC08]">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaagtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98193" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="550" r_length="512" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98194" i_stop="98350" i_length="157">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="557" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712425" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="98193"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAAGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAA.............................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235202" ref_strand="+" ref_description="SGN-E235202 [cLEL-6-H3](-)">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacccaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaacacgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="188" r_length="150" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E235202" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACCCAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAACACGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216138" ref_strand="+" ref_description="SGN-E216138 [cLEL-13-K23](-)">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="188" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E216138" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216264" ref_strand="+" ref_description="SGN-E216264 [cLEL-13-K23](-)">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="188" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E216264" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222852" ref_strand="+" ref_description="SGN-E222852 [cLEL-38-K18](-)">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="188" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E222852" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234530" ref_strand="+" ref_description="SGN-E234530 [cLEL-6-H3](-)">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="188" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E234530" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAA</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260424" ref_strand="-" ref_description="SGN-E260424 [cLEG-66-E15]">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97812" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="169" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E260424" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260424" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGC</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256690" ref_strand="-" ref_description="SGN-E256690 [cLEG-40-F17]">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97810" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="167" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E256690" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256690" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGAT</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260930" ref_strand="-" ref_description="SGN-E260930 [cLEG-55-H23]">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97810" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="167" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E260930" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260930" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGAT</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263031" ref_strand="-" ref_description="SGN-E263031 [cLEG-59-M22]">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97810" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="167" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E263031" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263031" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGAT</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263609" ref_strand="-" ref_description="SGN-E263609 [cLEG-60-F4]">
      <seq>gtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96656" stop="98109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96993" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97810" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="167" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E263609" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263609" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96993"/>
          <exon e_start="97682" e_stop="97810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGAT</genome_strand>
        <mrna_strand>GTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718659" ref_strand="+" ref_description="SGN-E718659 [FC05BE03]">
      <seq>taaacttggcactgttgctgccggtgcctacgccttgcatgaaaaacatgaggcaaagaaagatccaaaacatgcacacaaacacaagatagaggaagagatagcagcatctgctgcagttggggcaggtggatttgctttccatgagcatcatgagaaaaaacatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggcataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96657" stop="98295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96957" g_stop="96993" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="97995" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="351" r_length="314" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718659" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96957" e_stop="96993"/>
          <exon e_start="97682" e_stop="97995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAA</genome_strand>
        <mrna_strand>TAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAAAACATGAGGCAAAGAAAGATCCAAAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCATCTGCTGCAGTTGGGGCAGGTGGATTTGCTTTCCATGAGCATCATGAGAAAAAACATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGCATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713046" ref_strand="+" ref_description="SGN-E713046 [FB06CC08]">
      <seq>cttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96661" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96961" g_stop="96993" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="519" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="541"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96961" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713133" ref_strand="+" ref_description="SGN-E713133 [FB06DC06]">
      <seq>cttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96661" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96961" g_stop="96993" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="519" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="541"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96961" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712945" ref_strand="+" ref_description="SGN-E712945 [FB06BA11]">
      <seq>ttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96662" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96962" g_stop="96993" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="537" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96962" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>TTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259859" ref_strand="+" ref_description="SGN-E259859 [cLEG-51-B20]">
      <seq>ttggcactgttgctgccggtgcctacgccttggtacgttgatataatcttaccttatatatataaacgttattatcgattatttatacaaatcattttcttttattcaaattacgatcaaaatcatttaagagtttttctaccgggaacatccgattagtcaagattttcatcggagagtttgaatatattgattcctaataaaatgattttatttcctcgattcatgccaaaaatctataattaaggacggaagagtagccaattatttatttaatataatttaattccttttttccttttaaatttttagtttaatttcataatatatgtaaggaaggggtgtgaaaaatttaaagaagataaacagagaagggatggttttatttgcgagtaaaagagtttattttctatctaaacacgtttacactaatttcacattaagttcacctaattatagtaactctctatcatctatacaaaaatagcgtaataataaaaattgttctacaacttctaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96662" stop="97783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96962" g_stop="97483" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E259859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96962" e_stop="97483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTC</genome_strand>
        <mrna_strand>TTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716992" ref_strand="+" ref_description="SGN-E716992 [FB18CE07]">
      <seq>cactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96666" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96966" g_stop="96993" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98167" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="514" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="526"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96966" e_stop="96993"/>
          <exon e_start="97682" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715119" ref_strand="+" ref_description="SGN-E715119 [FB13BF02]">
      <seq>gctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccacaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagagaatggcatttgtttgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96673" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96973" g_stop="96993" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98186" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="527" r_length="506" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715119" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96973" e_stop="96993"/>
          <exon e_start="97682" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGG-ATTTGTTTGATTTCC</genome_strand>
        <mrna_strand>GCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCACAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGAGAATGGCATTTGTTTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251579" ref_strand="+" ref_description="SGN-E251579 [cLEG-9-J15]">
      <seq>aaaaatctataattaaggacggaagagtagccaattatttatttaatataatttaattccttttttccttttaaatttttagtttaatttcataatatatgtaaggaaggggtgtgaaaaatttaaagaagataaacagagaagggatggttttatttgcgagtaaaagagtttattttctatctaaacacgtttacactaatttcacattaagttcacctaattatagtaactctctatcatctatacaaaaatagcgtaataataaaaattgttctacaacttctaactcttcaattaaaaaaaaaacaacatatagaatatcgatgttgaaattactcagtacttcattcgtttcaaaataagtgttgttgtttgtacgacatgatcacaactgatgaaaatatgtcacacgaattagaacagagtctctgttattaattactttttccctcttttgttggtgataataaacataaaacaaaattagcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96892" stop="98099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97192" g_stop="97799" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E251579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97192" e_stop="97799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATG</genome_strand>
        <mrna_strand>AAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712971" ref_strand="+" ref_description="SGN-E712971 [FB06BD08]">
      <seq>cttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcattcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97378" stop="98485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97682" g_stop="98185" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="508" r_length="504" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97682" e_stop="98185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</genome_strand>
        <mrna_strand>CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCATTCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716143" ref_strand="+" ref_description="SGN-E716143 [FB16AH11]">
      <seq>aagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97400" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97700" g_stop="98167" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="478"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97700" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713570" ref_strand="+" ref_description="SGN-E713570 [FB09AA06]">
      <seq>gatagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97402" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97702" g_stop="98198" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E713570" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97702" e_stop="98198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATG</genome_strand>
        <mrna_strand>GATAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712735" ref_strand="+" ref_description="SGN-E712735 [FB05CG02]">
      <seq>gaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97402" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97702" g_stop="98197" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712735" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97702" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>GAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715932" ref_strand="+" ref_description="SGN-E715932 [FB15CF09]">
      <seq>gatagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97402" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97702" g_stop="98167" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="479"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E715932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97702" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GATAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714708" ref_strand="+" ref_description="SGN-E714708 [FB12AH04]">
      <seq>ccagaacatgcacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97421" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97709" g_stop="98167" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="472"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714708" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97709" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CCAGAACATG--CACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714477" ref_strand="+" ref_description="SGN-E714477 [FB11CC03]">
      <seq>agaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97411" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97711" g_stop="98193" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98194" i_stop="98350" i_length="157">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="490" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714477" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97711" e_stop="98193"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>AGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAA.............................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354776" ref_strand="+" ref_description="SGN-E354776 [cTOS-19-K21]">
      <seq>agaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97411" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97711" g_stop="98197" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E354776" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97711" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>AGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716481" ref_strand="+" ref_description="SGN-E716481 [FB17AF10]">
      <seq>tgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97417" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97717" g_stop="98197" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716481" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97717" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>TGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712421" ref_strand="+" ref_description="SGN-E712421 [FB04DC04]">
      <seq>cacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97421" stop="98481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97721" g_stop="98180" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="481"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E712421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97721" e_stop="98180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTG</genome_strand>
        <mrna_strand>CACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236704" ref_strand="+" ref_description="SGN-E236704 [cLEL-7-F22](-)">
      <seq>gatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97432" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97732" g_stop="98167" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E236704" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97732" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACC-ACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCAACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716163" ref_strand="+" ref_description="SGN-E716163 [FB16BB08]">
      <seq>ggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97438" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97738" g_stop="98189" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="479"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E716163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97738" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>GGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216133" ref_strand="+" ref_description="SGN-E216133 [cLEL-13-K12](-)">
      <seq>ggcacgagagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97444" stop="98305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97738" g_stop="98005" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E216133" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97738" e_stop="98005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAA</genome_strand>
        <mrna_strand>GGCA-CGAGAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714256" ref_strand="+" ref_description="SGN-E714256 [FB10DG06]">
      <seq>agatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97443" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97743" g_stop="98192" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98193" i_stop="98350" i_length="158">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="457" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E714256" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97743" e_stop="98192"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>AGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAA..............................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234757" ref_strand="+" ref_description="SGN-E234757 [cLEL-6-N2](-)">
      <seq>gcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaacaaagaagaaaaaaaaagctgaggggggacaccacccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaacaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97451" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97751" g_stop="98197" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98198" i_stop="98350" i_length="153">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="456" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E234757" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97751" e_stop="98197"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAA-AAAAGCTGAGGGGGGACACCA-CCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>GCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAACAAAGAAGAAAAAAAAAGCTGAGGGGGGACACCACCCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAACAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCAAAAAAAAAAAA.........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274743" ref_strand="+" ref_description="SGN-E274743 [cLEN-13-B14]">
      <seq>agctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaaaaaaaaccaaattaaaaaagaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97453" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97753" g_stop="98189" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="459"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E274743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97753" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>AGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276699" ref_strand="+" ref_description="SGN-E276699 [cLEN-14-B13]">
      <seq>agctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaagcaaaagaaaaaaaaaagcaaaaacaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97453" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97753" g_stop="98189" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="454"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E276699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97753" e_stop="98189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</genome_strand>
        <mrna_strand>AGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274804" ref_strand="+" ref_description="SGN-E274804 [cLEN-13-B13]">
      <seq>agctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97453" stop="98485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97753" g_stop="98185" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E274804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97753" e_stop="98185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</genome_strand>
        <mrna_strand>AGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276885" ref_strand="+" ref_description="SGN-E276885 [cLEN-14-B14]">
      <seq>ctgctgcagatggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97455" stop="98475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97755" g_stop="98175" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E276885" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97755" e_stop="98175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTT</genome_strand>
        <mrna_strand>CTGCTGCAGATGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276161" ref_strand="+" ref_description="SGN-E276161 [cLEN-21-G5]">
      <seq>tgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97459" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97759" g_stop="98198" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E276161" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97759" e_stop="98198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATG</genome_strand>
        <mrna_strand>TGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356606" ref_strand="+" ref_description="SGN-E356606 [cTOS-21-J9]">
      <seq>tgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97459" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97759" g_stop="98197" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E356606" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97759" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>TGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTT-AAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221170" ref_strand="+" ref_description="SGN-E221170 [cLEL-22-J1](-)">
      <seq>gcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacacccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97460" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97760" g_stop="98167" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="426"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E221170" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97760" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACA-CCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227975" ref_strand="+" ref_description="SGN-E227975 [cLEL-39-L14](-)">
      <seq>cagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97461" stop="98305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97761" g_stop="98006" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E227975" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97761" e_stop="98006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAG</genome_strand>
        <mrna_strand>CAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216321" ref_strand="+" ref_description="SGN-E216321 [cLEL-13-A15](-)">
      <seq>gttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97463" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97763" g_stop="98167" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="422"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E216321" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97763" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACC-ACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCAACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215933" ref_strand="+" ref_description="SGN-E215933 [cLEL-13-A15](-)">
      <seq>ggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacacccacccattcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97472" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97772" g_stop="98167" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="413"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E215933" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97772" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACA-CCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCCACCCATTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739272" ref_strand="+" ref_description="SGN-E739272 [LC16DB02]">
      <seq>ggatttgcattcaaaaaaacatcatgagaaaaaagatgccaagaatgaagaaaaaaaatctgaggggggacaccaccttctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttacaaatctcttgtgatgtaaaaaaggatgtattgggatttccaaaacgatcgagtgtgtattgaactttcctcgcaatcttctgttgaattaccttgaaaaatgttgcttttttaactggtgtaataaataatgatttttctagtaggaaaaaaaaaaaaaaaaactactggggggggggggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97491" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97775" g_stop="98163" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="413"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E739272" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97775" e_stop="98163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGCATTC-CATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTA</genome_strand>
        <mrna_strand>GGATTTGCATTCAAAAAAACATCATGAGAAAAAAGATGCCAAGAATGAAGAAAAAAAATCTGAGGGGGGACACCACCTTCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACAAATCTCTTGTGATGTAAAAAAGGATGTATTGGGATTTCCAAAACGATCGAGTGTGTATTGAACTTTCCTCGCAATCTTCTGTTGAATTACCTTGAAAAATGTTGCTTTTTTAACTGGTGTAATAAATAATGATTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242352" ref_strand="+" ref_description="SGN-E242352 [cLEE-3-I1]">
      <seq>tgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttatctagtgaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97480" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97780" g_stop="98172" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E242352" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97780" e_stop="98172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGA</genome_strand>
        <mrna_strand>TGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTATCTAGTGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398346" ref_strand="+" ref_description="SGN-E398346 [TUS-42-G2](-)">
      <seq>tccatgagcatcatttgaaaaaagatgccaagaaagaagaaaaaaaagttgagggaaaacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaaggatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagaggggtaataaataatgagttttctagtgaatggatttaaaggtgtcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97485" stop="98475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97785" g_stop="98197" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E398346" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97785" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>TCCATGAGCATCATTTGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGTTGAGGGAAAACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAAGGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGAGGGGTAATAAATAATGAGTTTTCTAGTGAATGGATTT-AAAGGTGTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220786" ref_strand="+" ref_description="SGN-E220786 [cLEL-22-J1](-)">
      <seq>ccatgagcatcatgagaaaaaaagatgccaagaaaaaagaaaaaaaagctgagggaggacacccacccattcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97486" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97786" g_stop="98167" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="401"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E220786" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97786" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGAGCATCATGAGA-AAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACA-CCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>CCATGAGCATCATGAGAAAAAAAGATGCCAAGAAAAAAGAAAAAAAAGCTGAGGGAGGACACCCACCCATTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308553" ref_strand="+" ref_description="SGN-E308553 [cLEY-21-C7]">
      <seq>aaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97502" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97802" g_stop="98197" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E308553" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97802" e_stop="98197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT</genome_strand>
        <mrna_strand>AAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217102" ref_strand="-" ref_description="SGN-E217102 [cLEL-1-D9](-)">
      <seq>ggttcgtggttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgattttcaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97616" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97909" g_stop="98167" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="259" polyA_stop="279"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E217102" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217102" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97909" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GGT-TCGTGGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTTCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216428" ref_strand="+" ref_description="SGN-E216428 [cLEL-1-D9](-)">
      <seq>ggcacgaggttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtgctgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97609" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97909" g_stop="98167" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="259" polyA_stop="278"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E216428" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97909" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>GGCACGAG-GTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGCTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220506" ref_strand="+" ref_description="SGN-E220506 [cLEL-12-J19](-)">
      <seq>ggcaccagaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97676" stop="98471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97967" g_stop="98171" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="206" polyA_stop="222"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E220506" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97967" e_stop="98171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGG</genome_strand>
        <mrna_strand>GGCACCA-GAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220625" ref_strand="+" ref_description="SGN-E220625 [cLEL-12-J19](-)">
      <seq>ggcaccagaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97676" stop="98472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97967" g_stop="98171" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="205" polyA_stop="222"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E220625" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97967" e_stop="98171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGG</genome_strand>
        <mrna_strand>GGCACCA-GAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235045" ref_strand="+" ref_description="SGN-E235045 [cLEL-6-N2](-)">
      <seq>aaaaaaaaagaccaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaatggatttgtttgatttcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="97689" stop="98493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97989" g_stop="98197" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98198" i_stop="98350" i_length="153">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98351" g_stop="98357" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="216" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E235045" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97989" e_stop="98197"/>
          <exon e_start="98351" e_stop="98357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTAATTTCCTCGCAATTTTATATTGAAAAATTATTAACTTTTATATACTTAATTTACTATAATGAGTCGATTACTTTATTTTTTAGATAATTAATTTAATTAGATACTTATAATTTTATTTTATAAATTATTTGACTCATAGTAAAAAA</genome_strand>
        <mrna_strand>AAAAAAAAAGACCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAAAAAAAAA.........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717486" ref_strand="+" ref_description="SGN-E717486 [FC01BE05]">
      <seq>aatcggccgaattgatcccaaagtattttgctctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103424" stop="104797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103724" g_stop="104497" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="788" r_length="774" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104625" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="805" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717486" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103724" e_stop="104497"/>
          <exon e_start="104609" e_stop="104625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGC</genome_strand>
        <mrna_strand>ATCCCAAAGTATTTTGCTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718562" ref_strand="+" ref_description="SGN-E718562 [FC05AB05]">
      <seq>gggcgattggcggccaatcggccgaattgatcccaaagtattttgttctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103424" stop="104797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103724" g_stop="104497" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="803" r_length="774" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104623" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="818" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103724" e_stop="104497"/>
          <exon e_start="104609" e_stop="104623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAG</genome_strand>
        <mrna_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718182" ref_strand="+" ref_description="SGN-E718182 [FC03DG08]">
      <seq>gcgattggcggccaatcggccgaattgatcccaaagtattttgttctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgaaaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103424" stop="104797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103724" g_stop="104497" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="801" r_length="774" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104621" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="814" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103724" e_stop="104497"/>
          <exon e_start="104609" e_stop="104621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACA</genome_strand>
        <mrna_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAAAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720581" ref_strand="+" ref_description="SGN-E720581 [FC11AH07]">
      <seq>aatcggccgaattgatcccaaagtattttgttctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103424" stop="104797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103724" g_stop="104497" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="788" r_length="774" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103724" e_stop="104497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG</genome_strand>
        <mrna_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720815" ref_strand="+" ref_description="SGN-E720815 [FC11DG05]">
      <seq>atcggccgaattgatcccaaagtattttgttctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103424" stop="104797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103724" g_stop="104497" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="787" r_length="774" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E720815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103724" e_stop="104497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG</genome_strand>
        <mrna_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366697" ref_strand="+" ref_description="SGN-E366697 [cLPT-17-O11]">
      <seq>tttgttctactactacattttcttcacacacaattgtcaccaaaaaacatcatggccgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggccaaaaaactaccacatatggagaggacaataaatatggtgagaaaacaagttatggtgagggagatgactacaaatatggtgagaaaactagttatggtgatggagatgacaacaaatatggtgagaaaactagttatggtgagggagatgacaacaaatatggtgagaaaactaattatggtgatgatacatatgtcgaaaaaactaacacatacggagaggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103436" stop="104484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103736" g_stop="104024" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104025" i_stop="104096" i_length="72">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104097" g_stop="104141" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="334" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104142" i_stop="104231" i_length="90">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104232" g_stop="104312" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="415" r_length="81" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E366697" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103736" e_stop="104024"/>
          <exon e_start="104097" e_stop="104141"/>
          <exon e_start="104232" e_stop="104312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGA-GAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATG</genome_strand>
        <mrna_strand>TTTGTTCTACTACTACATTTTCTTCACACACAATTGTCACCAAAAAACATCATGGCCGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCCAAAAAACTACCACATATGGAGAGGACAATAAATATGGTGAGAAAACAAGTTATG........................................................................GTGAGGGAGATGACTACAAATATGGTGAGAAAACTAGTTATGGTG..........................................................................................ATGGAGATGACAAC-AAATATGGTGAGAAAACTAGTTATGGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249080" ref_strand="+" ref_description="SGN-E249080 [cLEF-49-H1]">
      <seq>gttctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103439" stop="104563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103739" g_stop="104263" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E249080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103739" e_stop="104263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCT</genome_strand>
        <mrna_strand>GTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331054" ref_strand="+" ref_description="SGN-E331054 [cTOD-6-A20]">
      <seq>ctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103442" stop="104563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103742" g_stop="104263" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E331054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103742" e_stop="104263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCT</genome_strand>
        <mrna_strand>CTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718504" ref_strand="+" ref_description="SGN-E718504 [FC04DE02]">
      <seq>tactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103443" stop="104727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103743" g_stop="104427" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E718504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103743" e_stop="104427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGA</genome_strand>
        <mrna_strand>TACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729008" ref_strand="+" ref_description="SGN-E729008 [LA19CG02]">
      <seq>actactacatttttttgatgacacaattgtaaccaaaaaactncatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103444" stop="104927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103744" g_stop="104497" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104627" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="774" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E729008" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103744" e_stop="104497"/>
          <exon e_start="104609" e_stop="104627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTACATTTTTTTCAT-ACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAG</genome_strand>
        <mrna_strand>ACTACTACATTTTTTTGATGACACAATTGTAACCAAAAAACTNCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359525" ref_strand="-" ref_description="SGN-E359525 [cLHT-31-L4]">
      <seq>gttttctcaccatatttgttgtcatctcctccaccataactagctttctctccataactagttttctcaccatacttgttttcatctcccccaccataacttgttttctcaccatatgtattatctcctccgtaggaggtaggtttttcgccatatgtatcatcaccataactagttttctcaccatatttgtagtcatgtccctcaccataacttgttttctcaccatatttattgtcctctccatatgtggtagttttttcgccatatgtatcatcaccataactagttttttcaccatatgtgttgtctccataagtgctagttttttcactgtcttcataggttgtttcttcatatgtagttttctcaatgggggtgtcttcctctttgttcttgtggtggttaaagagaccaccaaagtgatgtttcttttcttcggccatgatgttttttggtgacaattgtgtatgaaaaaaatgtagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="104604" stop="103444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104304" g_stop="104096" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104095" i_stop="104025" i_length="71">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104024" g_stop="103744" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="489" r_length="281" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-E359525" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359525" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104304" e_stop="104096"/>
          <exon e_start="104024" e_stop="103744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCACCATATTTGTTGTCATCTCCTCCACCATAACTAGCTTTCTCTCCATAACTAGTTTTCTCACCATACTTGTTTTCATCTCCCCCACCATAACTTGTTTTCTCACCATATGTATTATCTCCTCCGTAGGAGGTAGGTTTTTCGCCATATGTATCACCACCATAACTAGTTTTCTCACCATATTTGTTGTCATCTCCCTCACTGTAACTAGTTTTCTCACCATATTTGTTTTCATCTCCATATGTGTTAGTTTTTTCGTCATATGTATCATCACCATAACTAGTTTTCTCACTATATTTGTTGTCATCTCCATATGTGGTAGTTTTTTTGCCATATGTATCATCACCATAACTAGTTTTTTCACCATATGTGTTGTCTCCATAAGTGCTAGTTTTTTCACTGTCTTCATAGGTTGTTTCTTCATATGTAGTTTTCTCAATGGGGGTGTCTTCCTCTTTGTTCTTGTGGTGGTTAAAGAGACCACCAAAGTGATGTTTCTTTTCTTCAGCCATGATGTTTTTTGGTGACAATTGTGTATGAAAAAAATGTAGTAGT</genome_strand>
        <mrna_strand>GTTTTCTCACCATATTTGTTGTCATCTCCTCCACCATAACTAGCTTTCTCTCCATAACTAGTTTTCTCACCATACTTGTTTTCATCTCCCCCACCATAACTTGTTTTCTCACCATATGTATTATCTCCTCCGTAGGAGGTAGGTTTTTCGCCATATGTATCATCACCATAACTAGTTTTCTCACCATATTTGTAGTCATGTCCCTCAC-.......................................................................CATAACTTGTTTTCTCACCATATTTATTGTCCTCTCCATATGTGGTAGTTTTTTCGCCATATGTATCATCACCATAACTAGTTTTTTCACCATATGTGTTGTCTCCATAAGTGCTAGTTTTTTCACTGTCTTCATAGGTTGTTTCTTCATATGTAGTTTTCTCAATGGGGGTGTCTTCCTCTTTGTTCTTGTGGTGGTTAAAGAGACCACCAAAGTGATGTTTCTTTTCTTCGGCCATGATGTTTTTTGGTGACAATTGTGTATGAAAAAAATGTAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249572" ref_strand="+" ref_description="SGN-E249572 [cLEF-56-L8]">
      <seq>tcgtgccgaattcggcacgagtacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103444" stop="104698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103749" g_stop="104398" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="671" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E249572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103749" e_stop="104398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGA</genome_strand>
        <mrna_strand>TACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717747" ref_strand="+" ref_description="SGN-E717747 [FC02CE04]">
      <seq>tacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacaccccctttgaaaaaactacatatgaacaaacaacctatgaagacagtgaaaaaactaccacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacctatgacaaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatgggggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatcctgagactactactaattatgaagagaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103449" stop="104691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103749" g_stop="104391" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E717747" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103749" e_stop="104391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGC-AAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCAT-CTGAGACTACTACTAATTATGAAGAGAATGATGA</genome_strand>
        <mrna_strand>TACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCTTTGAAAAAACTACATATGAACAAACAACCTATGAAGACAGTGAAAAAACTACCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACCTATGACAAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGGGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCCTGAGACTACTACTAATTATGAAGAGAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701495" ref_strand="+" ref_description="SGN-E701495 [FA16AE09]">
      <seq>catttttttcatacacaattgccaccaacacacatcatgggctgaacaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagctatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttaccgtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgacaaaacaacttatggtgggggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103451" stop="104522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103751" g_stop="104222" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E701495" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103751" e_stop="104222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTTCATACACAATTGTCACCAAAAAACATCAT-GGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATG</genome_strand>
        <mrna_strand>CATTTTTTTCATACACAATTGCCACCAACACACATCATGGGCTGAACAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGCTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACCGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGACAAAACAACTTATGGTGGGGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745060" ref_strand="+" ref_description="SGN-E745060 [GI|68500725]">
      <seq>atggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103487" stop="105091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103787" g_stop="104497" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104791" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="894" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E745060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103787" e_stop="104497"/>
          <exon e_start="104609" e_stop="104791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</genome_strand>
        <mrna_strand>ATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292338" ref_strand="+" ref_description="SGN-E292338 [cLET-1-C22]">
      <seq>cactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103508" stop="104712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103808" g_stop="104412" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E292338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103808" e_stop="104412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGA</genome_strand>
        <mrna_strand>CACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373789" ref_strand="+" ref_description="SGN-E373789 [TUS-31-K14]">
      <seq>cactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103508" stop="104641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103808" g_stop="104341" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E373789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103808" e_stop="104341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGA</genome_strand>
        <mrna_strand>CACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248496" ref_strand="+" ref_description="SGN-E248496 [cLEF-59-N18]">
      <seq>aagacacccccattgagaaaactacatatgaagagacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaagagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103548" stop="104719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103848" g_stop="104419" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E248496" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103848" e_stop="104419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTAC</genome_strand>
        <mrna_strand>AAGACACCCCCATTGAGAAAACTACATATGAAGAGACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAAGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367472" ref_strand="+" ref_description="SGN-E367472 [cLPT-7-G1]">
      <seq>gatgactacaaatatggtgagaaaactagttatggtgatggagatgacaacaaatatggtgagaaaactagttatggtgagggagatgacaacaaatatggtgagaaaactagttatggtgatgatacatatgtcgaaaaaactaacacatacggagaggacaataaacatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtgtaggagttggtgcctactcatctgagactactactaattatgaagagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103691" stop="104688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104024" g_stop="104388" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E367472" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104024" e_stop="104388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATGATACATATGACGAAAAAACTAA-CA-CAT-ATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGA</genome_strand>
        <mrna_strand>GATGACTACAAATATGGTGAGAAAACTAGTTATGGTGATGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGATGATACATATGTCGAAAAAACTAACACATACGGAGAGGACAATAAACATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGTAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373788" ref_strand="+" ref_description="SGN-E373788 [TUS-31-K14](-)">
      <seq>atggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaatgaattctcttgtcataacatatagtatttgttgtgtgctgatcaatctatcctttaattaatacgtactcagcatgcacctaaataatttgtatgtgtgttacactactcttctctttgatgttgtgcacctactttaatttgcatgagtgtgaataatattacgtatattgtttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103908" stop="105275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104208" g_stop="104497" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104975" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="657" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E373788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104208" e_stop="104497"/>
          <exon e_start="104609" e_stop="104975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTGTCTTTGATGTTGTGCACCTACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGTTTTTCTTAAA</genome_strand>
        <mrna_strand>ATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTCTCTTTGATGTTGTGCACCTACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGTTTTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E741086" ref_strand="+" ref_description="SGN-E741086 [GI|68500723]">
      <seq>aacaagtatggtgagaaaactagttatggagagaaagctagttatggtgtaggagatgacaacaaatatgatgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaaatatgaagagaatgatgatagtgaaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcagagaaggatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103925" stop="105091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104225" g_stop="104497" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104791" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="456" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E741086" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104225" e_stop="104497"/>
          <exon e_start="104609" e_stop="104791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</genome_strand>
        <mrna_strand>AACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGTAGGAGATGACAACAAATATGATGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAAATATGAAGAGAATGATGATAGTGAAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAGGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E741021" ref_strand="+" ref_description="SGN-E741021 [GI|68500715]">
      <seq>aacaagtatggtgagaaaactagttatggagagaaagctagttatgntggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103925" stop="105091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104225" g_stop="104497" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104791" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="456" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E741021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104225" e_stop="104497"/>
          <exon e_start="104609" e_stop="104791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</genome_strand>
        <mrna_strand>AACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGNTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745061" ref_strand="+" ref_description="SGN-E745061 [GI|68500713]">
      <seq>aacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103925" stop="105091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104225" g_stop="104497" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104791" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="456" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E745061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104225" e_stop="104497"/>
          <exon e_start="104609" e_stop="104791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</genome_strand>
        <mrna_strand>AACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295650" ref_strand="+" ref_description="SGN-E295650 [cLET-25-G18]">
      <seq>ttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacatgatagaggaagagatagccgcagttgctgcagttggtgctggtggatttgcattccatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103948" stop="105019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104248" g_stop="104497" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104719" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="361" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E295650" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104248" e_stop="104497"/>
          <exon e_start="104609" e_stop="104719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAA</genome_strand>
        <mrna_strand>TTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACATGATAGAGGAAGAGATAGCCGCAGTTGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348670" ref_strand="+" ref_description="SGN-E348670 [cTOF-30-J9]">
      <seq>gtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttggtaaatattctttaattctaactttccacgtgacaatgcatatgtatgagattacaagattaaatgacattttcctacgttaatcttcgatatggtatatgaaaatttcagcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaatgaattctcttgtcataacatatagtatttgnntgtgtgctgatcaatctatcctttaattaatacgtactcagcatgcacctaaataatttgtatggtgtgttacactactcttctctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="104034" stop="105211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104334" g_stop="104911" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E348670" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104334" e_stop="104911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTG-TTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTAT-GTGTGTTACACTACTCTTGTCTTTG</genome_strand>
        <mrna_strand>GTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGNNTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGGTGTGTTACACTACTCTTCTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348553" ref_strand="+" ref_description="SGN-E348553 [cTOF-30-J8]">
      <seq>atcttgaagaacttgggggaccttggagctgttgctgctggtgcctttgctttggtaaatattctttaattctaactttccacgtgacaatgcatatgtatgagattacaagattaaatgacattttcctaccgttaatcttcgatatggtatatgaaaatttcagcatgagaagcacaaggcagagaaagatccagagcatgcaccaccaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaatgaattctcttgtcataacatatagtatttgttgtgtgctgatcaatctatcctttaattaatacgtactcagcatgcacctaaataattttgtatgtgtgttacactactcttctctttgatgttgtgcacctaactttaatttgcatgagtgtgaataatattacgtatattggnttttcttaaaaaaaaaaaaaannnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="104145" stop="105275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104445" g_stop="104975" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="550"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E348553" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104445" e_stop="104975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGAAGAACTTGGGGGA-CTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTA-CGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCA-CA-CAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAA-TTTGTATGTGTGTTACACTACTCTTGTCTTTGATGTTGTGCACCT-ACTTTAATTTGCATGAGTGTGAATAATATTACGTATATT-GTTTTTCTTAAA</genome_strand>
        <mrna_strand>ATCTTGAAGAACTTGGGGGACCTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACCGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACCACCAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTTGTATGTGTGTTACACTACTCTTCTCTTTGATGTTGTGCACCTAACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGGNTTTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292829" ref_strand="+" ref_description="SGN-E292829 [cLET-11-A10]">
      <seq>gctgctggtgcctttgctttgcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaatgaattctcttgtcataacatatagtatttgttgtgtgctgatcaatctatcctttaattaatacgtactcagcatgcacctaaataatttgtatgtgtgttacactactcttctctttgatgttgggcacctactttaatttgcatgagtgtgaataatattacgtatattgtttttcttaaaaaaaaaacctgtggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="104177" stop="105275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104477" g_stop="104497" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104975" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="388" r_length="367" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-E292829" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104477" e_stop="104497"/>
          <exon e_start="104609" e_stop="104975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTGTCTTTGATGTTGTGCACCTACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGTTTTTCTTAAA</genome_strand>
        <mrna_strand>GCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTCTCTTTGATGTTGGGCACCTACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGTTTTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>438</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13636" PGL_stop="6583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13636" e_stop="12687"/>
            <exon e_start="12581" e_stop="12510"/>
            <exon e_start="9917" e_stop="9888"/>
            <exon e_start="6753" e_stop="6583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.945"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="13636" e_stop="12687" e_length="950"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12686" i_stop="12582" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12581" e_stop="12510" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="12509" i_stop="9918" i_length="2592"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9917" e_stop="9888" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9887" i_stop="6754" i_length="3134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6753" e_stop="6583" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13636" stop="13250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13623" stop="12973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13602" stop="12984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13392" stop="12999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13377" stop="12939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13057" stop="12687"/>
              <exon start="12581" stop="12510"/>
              <exon start="9917" stop="9888"/>
              <exon start="6753" stop="6669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13042" stop="12687"/>
              <exon start="12581" stop="12514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12914" stop="12687"/>
              <exon start="12581" stop="12510"/>
              <exon start="9917" stop="9888"/>
              <exon start="6753" stop="6583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCAATTCTGGAACTCCATTTTTGAAAATCCCACTTTTCTCCCTCAAATCCCCAAAACCCCCAAATTATTCGAAACCCTAGGCATTTCTCTTCTCCCCATCGCACATTACACAACACAATCATCACTTACACAAACCTCTATGTATATACACACTTGAGGATTTGATCTAAGAAGAAGAGTTTTACGATTTTGCCCCGCCGGAAAATGGCGTCAACTAAGCTGATGGCTTCATCGGCCTCGCGGAATTCCGATCGAAGGAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAG : GCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAG : GAAGAGCGAACCAGAGCACATTATAAACAG : ATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATATCGTTTTGCCACAGGCATAGTTTAAAATTAATGCCTTCTGATATAGATACAGAATAAAGGAGCCTAGCCATGCTGGGGTTAAGTGA</gDNA_template>
            <first_frame> C  Q  F  W  N  S  I  F  E  N  P  T  F  L  P  Q  I  P  K  T  P  K  L  F  E  T  L  G  I  S  L  L  P  I  A  H  Y  T  T  Q  S  S  L  T  Q  T  S  M  Y  I  H  T  *  G  F  D  L  R  R  R  V  L  R  F  C  P  A  G  K  W  R  Q  L  S  *  W  L  H  R  P  R  G  I  P  I  E  G  N  R  R  R  L  R  R  L  H  P  L  R  C  R  M  I  C  *  I  S  S  I  L  I  T  G  V  I  I  V  V  I  W  R  R  L  P  *  R  L  M  D  F  Y  G  M  C  M  G  K  V  R  G  R  R  L  I  L  C  *  M  R  I  L  R  Y  L  M  L  L  E  R  *  R  R  S  V  I  P  R  Q  R  R  L  V  G  Y  L  W  L  G  G  R  W  M  M  C  G  G  K  L  W  R  G  R  G  S  R  E  G  P  Q  L  R  D  V  R  R  R  Q  W  M  K  S  *  R  W  R  I  F  W  *  K  L  E  Q  L  R  R  R  H  W  L  G  R  G  Q  C  K  V  R  *  R  L  N  *  E  L  R  G  *  V  V  E  F  L  H  S  I  P  H  T  W  P  C  R  S  R  A  C  K  D  M  E  M  E  *  M  *  L  E  V  E  E  G  R  G  K  P  F  W  N  L  *  I  R  R  L  C  R  G  N  V  G  *  L  K  T  E  N  Q  L  P  G  L  E  N  G  N  R :   L  I  K  W  N  L  S  Q  *  Q  L  D  *  R  R  R  M  N  S  C  *  K  R  R :   K  S  E  P  E  H  I  I  N  R :   *  *  R  R  *  F  Q  L  W  R  S  E  N  R  L  V  S  C  E  E  C  A  P  C  S  G  N  I  S  F  C  H  R  H  S  L  K  L  M  P  S  D  I  D  T  E  *  R  S  L  A  M  L  G  L  S   </first_frame>
            <second_frame>  A  N  S  G  T  P  F  L  K  I  P  L  F  S  L  K  S  P  K  P  P  N  Y  S  K  P  *  A  F  L  F  S  P  S  H  I  T  Q  H  N  H  H  L  H  K  P  L  C  I  Y  T  L  E  D  L  I  *  E  E  E  F  Y  D  F  A  P  P  E  N  G  V  N  *  A  D  G  F  I  G  L  A  E  F  R  S  K  E  I  V  G  G  F  V  V  F  I  L  Y  D  A  E  *  F  A  E  S  A  V  F  *  *  R  E  *  *  *  *  *  F  G  G  D  F  H  D  G  *  W  I  F  T  E  C  V  W  G  R  S  G  D  G  G  *  Y  F  V  E  C  E  Y  Y  V  T  *  C  C  W  S  D  N  A  D  Q  *  F  R  D  S  D  G  *  W  D  T  F  G  *  E  D  G  G  *  C  V  E  G  N  C  G  G  E  E  G  A  E  K  G  R  S  C  G  M  *  G  G  G  S  G  *  N  H  D  V  G  G  F  F  G  E  S  W  S  S  *  G  G  G  T  G  W  G  G  A  S  A  R  *  G  E  G  *  T  R  N  *  E  V  E  W  W  N  F  C  I  R  F  P  I  H  G  H  A  A  A  E  R  A  R  I  W  K  W  N  R  C  D  W  R  W  K  R  E  E  E  S  H  F  G  T  F  R  *  G  G  S  A  E  A  T  *  D  D  *  K  Q  R  I  S  C  P  V  *  R  T  E  T   : G  L  S  S  G  T  *  V  N  S  S  *  I  R  G  G  E  *  T  A  V  E  R  E   : G  R  A  N  Q  S  T  L  *  T   : D  N  R  E  G  N  S  S  C  G  E  A  K  T  A  S  C  P  A  K  S  V  L  H  A  V  V  I  Y  R  F  A  T  G  I  V  *  N  *  C  L  L  I  *  I  Q  N  K  G  A  *  P  C  W  G  *  V  </second_frame>
            <third_frame>   P  I  L  E  L  H  F  *  K  S  H  F  S  P  S  N  P  Q  N  P  Q  I  I  R  N  P  R  H  F  S  S  P  H  R  T  L  H  N  T  I  I  T  Y  T  N  L  Y  V  Y  T  H  L  R  I  *  S  K  K  K  S  F  T  I  L  P  R  R  K  M  A  S  T  K  L  M  A  S  S  A  S  R  N  S  D  R  R  K  S  S  A  A  S  S  S  S  S  S  T  M  P  N  D  L  L  N  Q  Q  Y  S  N  N  G  S  N  N  S  S  N  L  E  A  T  S  M  T  V  D  G  F  L  R  N  V  Y  G  E  G  Q  G  T  E  A  N  T  L  L  N  A  N  I  T  L  L  D  A  A  G  A  I  T  P  I  S  D  S  E  T  A  T  V  S  G  I  P  L  V  R  R  T  V  D  D  V  W  R  E  I  V  E  G  K  R  E  Q  R  R  A  A  V  A  G  C  K  E  E  A  V  D  E  I  M  T  L  E  D  F  L  V  K  A  G  A  V  E  E  E  A  L  A  G  E  G  P  V  Q  G  E  V  K  V  E  L  G  T  E  R  L  S  G  G  I  F  A  F  D  S  P  Y  M  A  M  P  Q  Q  S  V  Q  G  Y  G  N  G  I  D  V  I  G  G  G  R  G  K  R  K  A  I  L  E  P  L  D  K  A  A  L  Q  R  Q  R  R  M  I  K  N  R  E  S  A  A  R  S  R  E  R  K  Q  :  A  Y  Q  V  E  L  E  S  I  A  V  R  L  E  E  E  N  E  Q  L  L  K  E  K  :  E  E  R  T  R  A  H  Y  K  Q  :  I  I  E  K  V  I  P  V  V  E  K  R  K  P  P  R  V  L  R  R  V  C  S  M  Q  W  *  Y  I  V  L  P  Q  A  *  F  K  I  N  A  F  *  Y  R  Y  R  I  K  E  P  S  H  A  G  V  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13469" stop="12687"/>
                    <exon start="12581" stop="12510"/>
                    <exon start="9917" stop="9888"/>
                    <exon start="6753" stop="6673"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKKKSFTILPRRKMASTKLMASSASRNSDRRKSSAASSSSSSTMPNDLLNQQYSNNGSNNSSNLEATSMTVDGFLRNVYGEGQGTEANTLLNANITLLDAAGAITPISDSETATVSGIPLVRRTVDDVWREIVEGKREQRRAAVAGCKEEAVDEIMTLEDFLVKAGAVEEEALAGEGPVQGEVKVELGTERLSGGIFAFDSPYMAMPQQSVQGYGNGIDVIGGGRGKRKAILEPLDKAALQRQRRMIKNRESAARSRERKQAYQVELESIAVRLEEENEQLLKEKEERTRAHYKQIIEKVIPVVEKRKPPRVLRRVCSMQW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19964" PGL_stop="18522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19964" e_stop="19560"/>
            <exon e_start="19408" e_stop="19340"/>
            <exon e_start="19108" e_stop="19026"/>
            <exon e_start="18906" e_stop="18848"/>
            <exon e_start="18736" e_stop="18690"/>
            <exon e_start="18597" e_stop="18522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19964" e_stop="19560" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.984">
            <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19408" e_stop="19340" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19108" e_stop="19026" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.969">
            <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18906" e_stop="18848" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.760">
            <gDNA_intron_boundary i_start="18847" i_stop="18737" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18736" e_stop="18690" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18689" i_stop="18598" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18597" e_stop="18522" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19026"/>
              <exon start="18906" stop="18848"/>
              <exon start="18736" stop="18690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19963" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19925" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19026"/>
              <exon start="18906" stop="18848"/>
              <exon start="18736" stop="18690"/>
              <exon start="18597" stop="18522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19911" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19026"/>
              <exon start="18906" stop="18892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19909" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19026"/>
              <exon start="18906" stop="18848"/>
              <exon start="18736" stop="18690"/>
              <exon start="18597" stop="18536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG : TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG : AAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAG : GAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAG : ATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAG : CATAGCGTCGAGAAGAGGAACAACATTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCTAGAAGAACATTATG</gDNA_template>
            <first_frame> C  P  *  L  L  L  L  S  F  P  Y  A  L  F  L  S  E  H  I  F  F  S  Y  N  L  R  N  N  N  N  M  E  L  D  E  L  R  L  I  L  K  N  S  S  V  D  L  W  G  L  I  D  T  A  I  S  V  A  I  L  D  H  G  N  E  L  R  S  R  R  D  A  I  V  E  K  L  Y  V  P  L  L  S  N  N  S  N  S  D  G  N  Y  E  I  M  K  R  I  E  R  N  I  D  D  D  K  L  K  T  E  E  N  S  N  E  E  D  L  E  I  S  K  I  L  R  I  K  N  H  F  E  I  P  N  Q  :  S  E  K  C  L  V  D  Q  L  Q  S  L  A  E  M  D  I  N  F  K  V  L  E  :  K  T  N  I  G  R  H  V  N  K  L  R  K  H  S  S  N  D  V  R  R  L  V  K  L  L  I  R :   R  W  K  D  I  V  D  E  W  V  R  L  N  T  L  M  E  D  T   : D  E  A  N  I  S  N  D  S  S  S  Y  C  D  H  K  :  H  S  V  E  K  R  N  N  I  S  P  S  S  K  R  L  R  E  D  Y  L  E  E  H  Y  </first_frame>
            <second_frame>  V  P  N  S  S  F  S  L  F  L  M  L  C  F  L  V  N  T  S  F  F  L  I  I  *  E  T  T  T  T  W  N  W  M  N  Y  V  *  S  *  R  I  Q  V  W  T  C  G  V  *  L  T  Q  Q  F  L  *  P  F  L  I  M  E  T  S  F  A  V  E  E  T  P  L  L  R  N  S  M  F  L  C  F  L  T  I  L  I  L  M  E  I  M  K  S  *  K  E  L  R  E  I  S  M  M  T  S  *  K  Q  R  K  I  V  M  K  K  I  *  R  S  A  K  S  S  E  S  R  T  I  L  K  S  Q  I  S :   L  R  N  A  W  L  I  S  F  K  V  L  L  K  W  T  L  I  S  R  F  L  R :   K  Q  I  L  E  G  M  *  T  S  C  E  S  I  H  Q  M  M  *  E  D  L  L  N  Y  S  S   : G  D  G  K  I  L  L  M  N  G  *  D  *  I  H  *  W  K  T  Q  :  M  K  R  I  F  Q  M  I  H  H  L  I  A  I  I  S :   I  A  S  R  R  G  T  T  L  V  H  R  Q  S  G  Y  V  R  I  T  *  K  N  I  M </second_frame>
            <third_frame>   S  L  T  P  P  S  L  F  S  L  C  S  V  S  *  *  T  H  L  F  F  L  *  F  K  K  Q  Q  Q  H  G  I  G  *  I  T  S  N  L  K  E  F  K  C  G  L  V  G  F  N  *  H  S  N  F  C  S  H  S  *  S  W  K  R  A  S  Q  S  K  R  R  H  C  *  E  T  L  C  S  S  A  F  *  Q  F  *  F  *  W  K  L  *  N  H  E  K  N  *  E  K  Y  R  *  *  Q  V  K  N  R  G  K  *  *  *  R  R  F  R  D  Q  Q  N  P  Q  N  Q  E  P  F  *  N  P  K  S   : V  *  E  M  L  G  *  S  A  S  K  S  C  *  N  G  H  *  F  Q  G  S  *   : E  N  K  Y  W  K  A  C  K  Q  A  A  K  A  F  I  K  *  C  K  K  T  C  *  T  T  H  Q  :  E  M  E  R  Y  C  *  *  M  G  E  I  K  Y  T  N  G  R  H  R :   *  S  E  Y  F  K  *  F  I  I  L  L  R  S  *   : A  *  R  R  E  E  E  Q  H  *  S  I  V  K  A  A  T  *  G  L  P  R  R  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19955" stop="19560"/>
                    <exon start="19408" stop="19340"/>
                    <exon start="19108" stop="19026"/>
                    <exon start="18906" stop="18848"/>
                    <exon start="18736" stop="18690"/>
                    <exon start="18597" stop="18523"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLLSFPYALFLSEHIFFSYNLRNNNNMELDELRLILKNSSVDLWGLIDTAISVAILDHGNELRSRRDAIVEKLYVPLLSNNSNSDGNYEIMKRIERNIDDDKLKTEENSNEEDLEISKILRIKNHFEIPNQSEKCLVDQLQSLAEMDINFKVLEKTNIGRHVNKLRKHSSNDVRRLVKLLIRRWKDIVDEWVRLNTLMEDTDEANISNDSSSYCDHKHSVEKRNNISPSSKRLREDYLEEHY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19951" e_stop="19560"/>
            <exon e_start="19408" e_stop="19306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.984" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="19951" e_stop="19560" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.984">
            <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19408" e_stop="19306" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19951" stop="19560"/>
              <exon start="19408" stop="19306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG : TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGA</gDNA_template>
            <first_frame> S  F  S  L  F  L  M  L  C  F  L  V  N  T  S  F  F  L  I  I  *  E  T  T  T  T  W  N  W  M  N  Y  V  *  S  *  R  I  Q  V  W  T  C  G  V  *  L  T  Q  Q  F  L  *  P  F  L  I  M  E  T  S  F  A  V  E  E  T  P  L  L  R  N  S  M  F  L  C  F  L  T  I  L  I  L  M  E  I  M  K  S  *  K  E  L  R  E  I  S  M  M  T  S  *  K  Q  R  K  I  V  M  K  K  I  *  R  S  A  K  S  S  E  S  R  T  I  L  K  S  Q  I  S :   L  R  N  A  W  L  I  S  F  K  V  L  L  K  W  T  L  I  S  R  F  L  R  *  F  N  *  Q  S  *  F  Y  Y  R </first_frame>
            <second_frame>  P  S  L  F  S  L  C  S  V  S  *  *  T  H  L  F  F  L  *  F  K  K  Q  Q  Q  H  G  I  G  *  I  T  S  N  L  K  E  F  K  C  G  L  V  G  F  N  *  H  S  N  F  C  S  H  S  *  S  W  K  R  A  S  Q  S  K  R  R  H  C  *  E  T  L  C  S  S  A  F  *  Q  F  *  F  *  W  K  L  *  N  H  E  K  N  *  E  K  Y  R  *  *  Q  V  K  N  R  G  K  *  *  *  R  R  F  R  D  Q  Q  N  P  Q  N  Q  E  P  F  *  N  P  K  S   : V  *  E  M  L  G  *  S  A  S  K  S  C  *  N  G  H  *  F  Q  G  S  *  G  N  L  I  N  N  H  D  F  I  I   </second_frame>
            <third_frame>   L  L  S  F  P  Y  A  L  F  L  S  E  H  I  F  F  S  Y  N  L  R  N  N  N  N  M  E  L  D  E  L  R  L  I  L  K  N  S  S  V  D  L  W  G  L  I  D  T  A  I  S  V  A  I  L  D  H  G  N  E  L  R  S  R  R  D  A  I  V  E  K  L  Y  V  P  L  L  S  N  N  S  N  S  D  G  N  Y  E  I  M  K  R  I  E  R  N  I  D  D  D  K  L  K  T  E  E  N  S  N  E  E  D  L  E  I  S  K  I  L  R  I  K  N  H  F  E  I  P  N  Q  :  S  E  K  C  L  V  D  Q  L  Q  S  L  A  E  M  D  I  N  F  K  V  L  E  V  I  *  L  T  I  M  I  L  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19949" stop="19560"/>
                    <exon start="19408" stop="19331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSFPYALFLSEHIFFSYNLRNNNNMELDELRLILKNSSVDLWGLIDTAISVAILDHGNELRSRRDAIVEKLYVPLLSNNSNSDGNYEIMKRIERNIDDDKLKTEENSNEEDLEISKILRIKNHFEIPNQSEKCLVDQLQSLAEMDINFKVLEVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26316" PGL_stop="26033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26316" e_stop="26033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="26316" e_stop="26033" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26316" stop="26033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAACTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACATGAAGATACATTTTTGCATGTGTATATTACAATTTTCTCTCGCTTTATACAAAACAGAA</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  S  R  F  I  Q  K  *  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  T  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  *  R  Y  I  F  A  C  V  Y  Y  N  F  L  S  L  Y  T  K  Q   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  T  F  L  H  V  Y  I  T  I  F  S  R  F  I  Q  N  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  M  K  I  H  F  C  M  C  I  L  Q  F  S  L  A  L  Y  K  T  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0094K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="39843" PGL_stop="51490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39843" e_stop="39945"/>
            <exon e_start="40596" e_stop="41016"/>
            <exon e_start="42830" e_stop="42978"/>
            <exon e_start="43917" e_stop="44159"/>
            <exon e_start="44997" e_stop="45108"/>
            <exon e_start="46137" e_stop="46307"/>
            <exon e_start="47489" e_stop="47541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.083" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="0.657" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39843" e_stop="39945" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.083">
            <gDNA_intron_boundary i_start="39946" i_stop="40595" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="40596" e_stop="41016" e_length="421"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41017" i_stop="42829" i_length="1813"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42830" e_stop="42978" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.657" acc_prob="0.984">
            <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43917" e_stop="44159" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44160" i_stop="44996" i_length="837"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="44997" e_stop="45108" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.821" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45109" i_stop="46136" i_length="1028"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="46137" e_stop="46307" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46308" i_stop="47488" i_length="1181"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47489" e_stop="47541" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39843" stop="39945"/>
              <exon start="40596" stop="41016"/>
              <exon start="42830" stop="42978"/>
              <exon start="43917" stop="43947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39846" stop="39945"/>
              <exon start="40596" stop="41016"/>
              <exon start="42830" stop="42978"/>
              <exon start="43917" stop="43997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39848" stop="39945"/>
              <exon start="40596" stop="40769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39878" stop="39945"/>
              <exon start="40596" stop="40802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40821" stop="41016"/>
              <exon start="42830" stop="42978"/>
              <exon start="43917" stop="44076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42833" stop="42978"/>
              <exon start="43917" stop="44159"/>
              <exon start="44997" stop="45082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42898" stop="42978"/>
              <exon start="43917" stop="44159"/>
              <exon start="44997" stop="45108"/>
              <exon start="46137" stop="46307"/>
              <exon start="47489" stop="47541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGA : GTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAG : GTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAG : CAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAG : GCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGAT : ATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATG : GACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACA</gDNA_template>
            <first_frame> P  F  *  V  L  D  *  A  E  K  K  T  F  F  I  S  F  S  R  I  F  S  V  K  *  L  A  F  S  L  I  I  L  M   : S  F  D  A  Q  D  C  L  *  I  L  W  L  L  N  L  Q  V  F  Y  V  S  C  *  I  W  S  L  V  E  F  E  F  S  Y  S  C  L  R  S  L  K  F  *  K  S  R  C  S  V  W  *  I  *  V  V  L  E  F  I  I  *  N  G  *  *  W  A  *  W  K  S  E  Y  K  G  F  R  S  T  E  Q  C  *  *  T  V  *  C  Y  L  F  R  *  I  R  W  L  E  N  K  F  F  I  T  *  G  H  *  V  F  R  *  A  Y  *  *  V  F  D  S  R  N  E  I  R  E  H  T  S  E  F  *  S  S  A  S  S  S  E  R :   F  G  A  L  H  Y  C  T  C  D  Y  W  R  R  S  F  P  *  R  P  G  Y  G  I  F  K  I  F  D  *  E  E  G  *  S  K  T  *  C  N  I  G  *  T  F  *  T  W  K   : A  K  A  H  R  R  A  G  K  D  P  R  G  W  N  S  R  G  *  P  Y  *  E  Y  A  *  N  F  *  I  V  G  A  A  I  C  *  R  T  H  S  Y  C  R  Q  D  Y  H  R  F  *  *  V  S  S  K  V  E  N  R  G  A  Y  C  W  N  Q  G  R  C  S  T  I  F  G  Y  G  Q  E  T  S   : G  V  W  S  S  C  Q  A  G  N  S  F  *  L  P  *  F  C  Q  I  R  R  H  R  L  L  P  I  G  W  *  S  S  G  I  G  R  I :   Y  G  Q  E  Q  R  S  H  S  F  W  T  R  R  D  I  C  T  T  K  A  A  K  G  Y  N  *  I  S  S  S  G  L  H  *  A  R  Y  *  N  W  *  T  F  Q  S  T  S  D  Y  C  K  S  S  C  L  W :   T  C  T  R  C  *  S  S  W  G  T  P  P  H  L  L  H  </first_frame>
            <second_frame>  L  F  K  S  W  I  E  Q  K  R  R  L  F  S  S  V  F  Q  E  Y  L  V  *  S  D  *  H  S  L  *  *  S  *  *  :  V  L  M  H  R  I  V  Y  E  F  F  G  C  *  I  C  K  F  F  M  L  V  A  E  S  G  V  *  L  N  L  S  S  L  T  V  V  C  E  A  *  N  F  R  R  V  G  V  Q  F  G  E  F  K  W  F  W  S  S  S  F  E  M  D  S  S  G  L  N  G  N  Q  S  T  R  D  S  E  V  P  N  N  A  D  E  R  C  D  A  T  F  S  D  E  L  D  G  W  R  T  S  S  S  S  L  K  D  I  R  S  S  D  E  H  T  D  E  C  L  T  P  E  M  K  Y  E  S  T  H  R  S  S  S  P  P  P  Q  A  R  R   : G  L  E  H  C  I  T  A  P  V  T  I  G  G  G  L  F  P  E  G  Q  D  M  A  F  S  R  S  L  T  E  R  R  V  S  P  R  H  N  V  I  L  D  R  L  S  E  R  G  K  :  Q  K  L  I  A  E  L  V  K  I  Q  G  D  G  T  V  E  V  D  L  T  K  S  T  P  E  T  S  E  L  L  E  L  R  S  V  E  E  P  T  L  T  V  D  R  I  I  T  D  F  N  K  S  V  P  K  L  K  I  V  V  L  I  V  G  T  R  G  D  V  Q  P  F  L  A  M  A  K  R  L  Q  :  A  F  G  H  H  V  R  L  A  T  H  S  N  F  R  D  F  V  K  S  G  G  I  D  Y  Y  P  L  G  G  D  P  R  V  L  A  G   : Y  M  A  R  N  K  G  L  I  P  S  G  P  G  E  I  S  V  Q  R  K  Q  L  K  A  I  I  E  S  L  L  P  A  C  T  E  P  D  I  E  T  G  E  P  F  R  A  Q  A  I  I  A  N  P  P  A  Y   : G  H  A  H  V  A  E  A  L  G  V  P  L  H  I  F  F  T </second_frame>
            <third_frame>   F  L  S  L  G  L  S  R  K  E  D  F  F  H  Q  F  F  K  N  I  *  C  E  V  I  S  I  L  F  D  N  L  N  E :   F  *  C  T  G  L  F  M  N  S  L  V  A  E  F  A  S  F  L  C  *  L  L  N  L  E  F  S  *  I  *  V  L  L  Q  L  F  A  K  L  E  I  L  E  E  *  V  F  S  L  V  N  L  S  G  F  G  V  H  H  L  K  W  I  V  V  G  L  M  E  I  R  V  Q  G  I  Q  K  Y  R  T  M  L  M  N  G  V  M  L  P  F  P  M  N  *  M  A  G  E  Q  V  L  H  H  L  R  T  L  G  L  Q  M  S  I  L  M  S  V  *  L  Q  K  *  N  T  R  A  H  I  G  V  L  V  L  R  L  K  L  G  E  :  V  W  S  T  A  L  L  H  L  *  L  L  A  E  V  F  S  L  K  A  R  I  W  H  F  Q  D  L  *  L  R  G  G  L  V  Q  D  I  M  *  Y  W  I  D  F  L  N  V  E  S :   K  S  S  S  Q  S  W  *  R  S  K  G  M  E  Q  *  R  L  T  L  L  R  V  R  L  K  L  L  N  C  W  S  C  D  L  L  K  N  P  L  L  L  *  T  G  L  S  Q  I  L  I  S  Q  F  Q  S  *  K  S  W  C  L  L  L  E  P  G  E  M  F  N  H  F  W  L  W  P  R  D  F  R :   R  L  V  I  M  S  G  W  Q  L  I  L  T  S  V  I  L  S  N  Q  E  A  *  T  T  T  H  W  V  V  I  L  G  Y  W  Q  D  :  I  W  P  G  T  K  V  S  F  L  L  D  Q  E  R  Y  L  Y  N  E  S  S  *  R  L  *  L  N  L  F  F  R  L  A  L  S  Q  I  L  K  L  V  N  L  S  E  H  K  R  L  L  Q  I  L  L  L  M  :  D  M  H  T  L  L  K  L  L  G  Y  P  S  T  S  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40719" stop="41016"/>
                    <exon start="42830" stop="42978"/>
                    <exon start="43917" stop="44159"/>
                    <exon start="44997" stop="45108"/>
                    <exon start="46137" stop="46307"/>
                    <exon start="47489" stop="47541"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRRVGVQFGEFKWFWSSSFEMDSSGLNGNQSTRDSEVPNNADERCDATFSDELDGWRTSSSSLKDIRSSDEHTDECLTPEMKYESTHRSSSPPPQARRGLEHCITAPVTIGGGLFPEGQDMAFSRSLTERRVSPRHNVILDRLSERGKQKLIAELVKIQGDGTVEVDLTKSTPETSELLELRSVEEPTLTVDRIITDFNKSVPKLKIVVLIVGTRGDVQPFLAMAKRLQAFGHHVRLATHSNFRDFVKSGGIDYYPLGGDPRVLAGYMARNKGLIPSGPGEISVQRKQLKAIIESLLPACTEPDIETGEPFRAQAIIANPPAYGHAHVAEALGVPLHIFFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44991" e_stop="45108"/>
            <exon e_start="46137" e_stop="46307"/>
            <exon e_start="47489" e_stop="47552"/>
            <exon e_start="48383" e_stop="48440"/>
            <exon e_start="48531" e_stop="48708"/>
            <exon e_start="49018" e_stop="49148"/>
            <exon e_start="49592" e_stop="49666"/>
            <exon e_start="50294" e_stop="50370"/>
            <exon e_start="50610" e_stop="50657"/>
            <exon e_start="50789" e_stop="50938"/>
            <exon e_start="51058" e_stop="51490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.821" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.955" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="0.973"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.469" e_score="0.938"/>
          <exon-intron don_prob="0.940" acc_prob="0.975" e_score="0.984"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="44991" e_stop="45108" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.821" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45109" i_stop="46136" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46137" e_stop="46307" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46308" i_stop="47488" i_length="1181"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47489" e_stop="47552" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.839">
            <gDNA_intron_boundary i_start="47553" i_stop="48382" i_length="830"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48383" e_stop="48440" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="48441" i_stop="48530" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48531" e_stop="48708" e_length="178"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.872">
            <gDNA_intron_boundary i_start="48709" i_stop="49017" i_length="309"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="49018" e_stop="49148" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.955">
            <gDNA_intron_boundary i_start="49149" i_stop="49591" i_length="443"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="49592" e_stop="49666" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="49667" i_stop="50293" i_length="627"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="50294" e_stop="50370" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50371" i_stop="50609" i_length="239"/>
          </intron>
          <exon e_serial="9" e_score="0.938">
            <gDNA_exon_boundary e_start="50610" e_stop="50657" e_length="48"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.469">
            <gDNA_intron_boundary i_start="50658" i_stop="50788" i_length="131"/>
          </intron>
          <exon e_serial="10" e_score="0.984">
            <gDNA_exon_boundary e_start="50789" e_stop="50938" e_length="150"/>
          </exon>
          <intron i_serial="10" don_prob="0.940" acc_prob="0.975">
            <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119"/>
          </intron>
          <exon e_serial="11" e_score="0.993">
            <gDNA_exon_boundary e_start="51058" e_stop="51490" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44991" stop="45108"/>
              <exon start="46137" stop="46307"/>
              <exon start="47489" stop="47552"/>
              <exon start="48383" stop="48440"/>
              <exon start="48531" stop="48708"/>
              <exon start="49018" stop="49056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49027" stop="49148"/>
              <exon start="49592" stop="49666"/>
              <exon start="50294" stop="50370"/>
              <exon start="50610" stop="50657"/>
              <exon start="50789" stop="50938"/>
              <exon start="51058" stop="51274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50814" stop="50938"/>
              <exon start="51058" stop="51483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250877" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50824" stop="50938"/>
              <exon start="51058" stop="51490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50825" stop="50938"/>
              <exon start="51058" stop="51490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50825" stop="50938"/>
              <exon start="51058" stop="51490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50825" stop="50938"/>
              <exon start="51058" stop="51490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50845" stop="50938"/>
              <exon start="51058" stop="51486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250876" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACAGGCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGAT : ATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATG : GACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACAATGCCCTGGAC : GCCAACTTCTGAATTTCCTCACCCGATGGCTCGTGTACCTCAACCTGCTGCGTATTGG : CTTTCCTACATACTCGTGGATTTACTTGTCTGGTGGGGCATAAGAGGCTACATCAACGATTTTAGGAAAAAGAAGTTAAACCTTCCTCCTATCGCCTACTTCAGTACATACCACGGATCAATTTCTCACTTCCCAACTGGCTACATGTGGAGTCCACATGTTGTGCCAAAGCCTAAAG : ATTGGGGCTCTTTGGTTGATATTGTTGGCTATTGTTTCTTAAACCTTGGGAGAAACTACCAACCTCCTGAAGAATTTATCAAGTGGATCCAAAATGGGCCTAAACCTGTATATATTGGGTTTGGGAGCATG : ATATAATTTTGGAGGCACTAAGGAATACTGGGCAGAGGGGAATTCTTGACCGAGGTTGGGGAGATCTTGGTACTT : TTCAAGAGATTCCTGAAGATGTTTTTCTTGTTGCGGAGTACCCTCATGATTGGCTTTTTCCTCAATGCGCAGCTGTT : GTTCATCACGGTGGTGCTGGAACCACAGCTGCGGGACTGCGTGCTGGG : TGTCCAACAACTATAGTACCATTCTTCGGTGATCAATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT : GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGACAGAG</gDNA_template>
            <first_frame> *  Q  A  F  G  H  H  V  R  L  A  T  H  S  N  F  R  D  F  V  K  S  G  G  I  D  Y  Y  P  L  G  G  D  P  R  V  L  A  G   : Y  M  A  R  N  K  G  L  I  P  S  G  P  G  E  I  S  V  Q  R  K  Q  L  K  A  I  I  E  S  L  L  P  A  C  T  E  P  D  I  E  T  G  E  P  F  R  A  Q  A  I  I  A  N  P  P  A  Y   : G  H  A  H  V  A  E  A  L  G  V  P  L  H  I  F  F  T  M  P  W  T :   P  T  S  E  F  P  H  P  M  A  R  V  P  Q  P  A  A  Y  W  :  L  S  Y  I  L  V  D  L  L  V  W  W  G  I  R  G  Y  I  N  D  F  R  K  K  K  L  N  L  P  P  I  A  Y  F  S  T  Y  H  G  S  I  S  H  F  P  T  G  Y  M  W  S  P  H  V  V  P  K  P  K   : D  W  G  S  L  V  D  I  V  G  Y  C  F  L  N  L  G  R  N  Y  Q  P  P  E  E  F  I  K  W  I  Q  N  G  P  K  P  V  Y  I  G  F  G  S  M  :  I  *  F  W  R  H  *  G  I  L  G  R  G  E  F  L  T  E  V  G  E  I  L  V  L  :  F  K  R  F  L  K  M  F  F  L  L  R  S  T  L  M  I  G  F  F  L  N  A  Q  L  L :   F  I  T  V  V  L  E  P  Q  L  R  D  C  V  L  G :   V  Q  Q  L  *  Y  H  S  S  V  I  N  S  S  G  A  I  E  F  M  K  R  D  W  D  L  L  Q  F  L  L  T  S  L  V  *  K  D  S  L  M  L  *  H  L  C  F  S  L  M :   *  N  P  E  *  W  N  *  L  Y  Y  *  R  T  K  M  V  L  Q  V  Q  L  M  L  S  I  G  I  C  L  Q  K  C  H  C  Q  P  Q  P  R  L  M  R  I  S  M  V  Q  I  R  Y  N  G  F  S  Q  G  L  E  E  S  V  A  C  L  V  V  L  G  S  E  T  A  F  I  E  L  H  S  C  V  I  S  Y  F  F  L  I  N  W  L  Y  W  F  I  T  S  F  F  L  L  G  L  *  N  K  L  H  G  K  T  L  *  T  Y  L  L  L  L  F  S  *  *  F  C  N  N  T  K  L  L  F  I  L  V  F  N  D  R  F  A  E  T  E </first_frame>
            <second_frame>  D  R  R  L  V  I  M  S  G  W  Q  L  I  L  T  S  V  I  L  S  N  Q  E  A  *  T  T  T  H  W  V  V  I  L  G  Y  W  Q  D  :  I  W  P  G  T  K  V  S  F  L  L  D  Q  E  R  Y  L  Y  N  E  S  S  *  R  L  *  L  N  L  F  F  R  L  A  L  S  Q  I  L  K  L  V  N  L  S  E  H  K  R  L  L  Q  I  L  L  L  M  :  D  M  H  T  L  L  K  L  L  G  Y  P  S  T  S  S  S  Q  C  P  G   : R  Q  L  L  N  F  L  T  R  W  L  V  Y  L  N  L  L  R  I  G :   F  P  T  Y  S  W  I  Y  L  S  G  G  A  *  E  A  T  S  T  I  L  G  K  R  S  *  T  F  L  L  S  P  T  S  V  H  T  T  D  Q  F  L  T  S  Q  L  A  T  C  G  V  H  M  L  C  Q  S  L  K  :  I  G  A  L  W  L  I  L  L  A  I  V  S  *  T  L  G  E  T  T  N  L  L  K  N  L  S  S  G  S  K  M  G  L  N  L  Y  I  L  G  L  G  A  * :   Y  N  F  G  G  T  K  E  Y  W  A  E  G  N  S  *  P  R  L  G  R  S  W  Y  F :   S  R  D  S  *  R  C  F  S  C  C  G  V  P  S  *  L  A  F  S  S  M  R  S  C   : C  S  S  R  W  C  W  N  H  S  C  G  T  A  C  W   : V  S  N  N  Y  S  T  I  L  R  *  S  I  L  L  G  R  *  N  S  *  K  G  T  G  T  C  S  N  S  Y  *  Q  A  *  C  R  R  T  L  *  C  Y  N  I  Y  A  S  A  *   : C  E  I  P  S  N  G  T  S  C  I  I  R  E  R  R  W  C  C  R  C  S  *  C  F  P  S  A  F  A  F  R  N  A  I  A  N  P  N  P  G  L  *  G  Y  R  W  S  K  S  V  T  M  A  F  H  K  D  W  K  N  L  L  P  A  L  W  F  L  A  L  K  L  H  L  *  S  C  I  V  V  L  F  H  I  F  F  *  L  I  G  C  I  G  S  S  H  H  S  F  F  L  A  C  K  I  S  Y  M  A  K  L  Y  R  H  I  Y  C  Y  Y  F  H  S  D  F  V  T  T  P  S  S  C  S  F  *  C  S  M  I  A  L  Q  R  Q   </second_frame>
            <third_frame>   T  G  V  W  S  S  C  Q  A  G  N  S  F  *  L  P  *  F  C  Q  I  R  R  H  R  L  L  P  I  G  W  *  S  S  G  I  G  R  I :   Y  G  Q  E  Q  R  S  H  S  F  W  T  R  R  D  I  C  T  T  K  A  A  K  G  Y  N  *  I  S  S  S  G  L  H  *  A  R  Y  *  N  W  *  T  F  Q  S  T  S  D  Y  C  K  S  S  C  L  W :   T  C  T  R  C  *  S  S  W  G  T  P  P  H  L  L  H  N  A  L  D  :  A  N  F  *  I  S  S  P  D  G  S  C  T  S  T  C  C  V  L   : A  F  L  H  T  R  G  F  T  C  L  V  G  H  K  R  L  H  Q  R  F  *  E  K  E  V  K  P  S  S  Y  R  L  L  Q  Y  I  P  R  I  N  F  S  L  P  N  W  L  H  V  E  S  T  C  C  A  K  A  *  R :   L  G  L  F  G  *  Y  C  W  L  L  F  L  K  P  W  E  K  L  P  T  S  *  R  I  Y  Q  V  D  P  K  W  A  *  T  C  I  Y  W  V  W  E  H   : D  I  I  L  E  A  L  R  N  T  G  Q  R  G  I  L  D  R  G  W  G  D  L  G  T   : F  Q  E  I  P  E  D  V  F  L  V  A  E  Y  P  H  D  W  L  F  P  Q  C  A  A  V  :  V  H  H  G  G  A  G  T  T  A  A  G  L  R  A  G  :  C  P  T  T  I  V  P  F  F  G  D  Q  F  F  W  G  D  R  I  H  E  K  G  L  G  P  A  P  I  P  I  D  K  L  S  V  E  G  L  S  D  A  I  T  F  M  L  Q  P  D  :  V  K  S  R  V  M  E  L  A  V  L  L  E  N  E  D  G  V  A  G  A  V  D  A  F  H  R  H  L  P  S  E  M  P  L  P  T  P  T  P  A  Y  E  D  I  D  G  P  N  P  L  Q  W  L  F  T  R  I  G  R  I  C  C  L  P  C  G  S  W  L  *  N  C  I  Y  R  V  A  *  L  C  Y  F  I  F  F  F  D  *  L  V  V  L  V  H  H  I  I  L  S  S  W  L  V  K  *  V  T  W  Q  N  F  I  D  I  F  I  A  I  I  F  I  V  I  L  *  Q  H  Q  A  L  V  H  F  S  V  Q  *  S  L  C  R  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44994" stop="45108"/>
                    <exon start="46137" stop="46307"/>
                    <exon start="47489" stop="47552"/>
                    <exon start="48383" stop="48440"/>
                    <exon start="48531" stop="48708"/>
                    <exon start="49018" stop="49148"/>
                    <exon start="49592" stop="49597"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAFGHHVRLATHSNFRDFVKSGGIDYYPLGGDPRVLAGYMARNKGLIPSGPGEISVQRKQLKAIIESLLPACTEPDIETGEPFRAQAIIANPPAYGHAHVAEALGVPLHIFFTMPWTPTSEFPHPMARVPQPAAYWLSYILVDLLVWWGIRGYINDFRKKKLNLPPIAYFSTYHGSISHFPTGYMWSPHVVPKPKDWGSLVDIVGYCFLNLGRNYQPPEEFIKWIQNGPKPVYIGFGSMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51095" stop="51370"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTKMVLQVQLMLSIGICLQKCHCQPQPRLMRISMVQIRYNGFSQGLEESVACLVVLGSETAFIELHSCVISYFFLINWLYWFITSFFLLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49613" stop="49666"/>
                    <exon start="50294" stop="50370"/>
                    <exon start="50610" stop="50657"/>
                    <exon start="50789" stop="50804"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILGRGEFLTEVGEILVLFKRFLKMFFLLRSTLMIGFFLNAQLLFITVVLEPQLRDCVLGVQQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="54040" PGL_stop="57145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54040" e_stop="54307"/>
            <exon e_start="56350" e_stop="56744"/>
            <exon e_start="56980" e_stop="57145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="0.922"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="54040" e_stop="54307" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="54308" i_stop="56349" i_length="2042"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="56350" e_stop="56744" e_length="395"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="56745" i_stop="56979" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56980" e_stop="57145" e_length="166"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54040" stop="54307"/>
              <exon start="56350" stop="56697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54243" stop="54307"/>
              <exon start="56350" stop="56744"/>
              <exon start="56980" stop="57145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTTTGGGATTTGCTGCAATTGCTTACATCGGAGTAGACTATCTCCGGTTTATTTCTCCGGCATGGCATGACCGGTTACAGCCGACGCTATGGACCATATTGGCGATCGCTGCTATTATTCGGGTTCCATTTTACAAACACTGGTCATCAGAGCTCCGTTCAGCTATACCATTTATTTTCGCTATGCTTTTTTTGCTCTCTGCTCTTCTTTTTGAAGCCATTTCTGTCCGCTCTGTCACTGCCGTTCTTGGTCTTGAATGGAACAG : TGATGCATCACCTCTTCCTGATGTTGGTCAGTGGTTGGTGCTGTCATTGAATGAGAAACTACCTCAAACAGTGGTTAATATATTGAGAGCTCGTATAATTGGATTACATCATTTTCTGATGCTGTTTATCATGCTTGCTTTCTCTGTACTCTTTGAATCGGTTGAAGCTCCTGGTCTTGGGCTTGGTGCAAGATTCATGTTCACAATGGGAATCGGAAGGCTACTTCGGGCCATAACTTTTATCTCCACAATTCTACCATCTGCTCGACCATGGTGTGCATCTGCTAGATTCCTTGTTCCTCAGCACCCTCATCCTTGGGCTCAGAAATATTATGTACCATATGCCACAGATTCAAATGCCATACGGAACGTCATAAACTGGGACACAGCATATG : CTGATCCTGGGGAATACGATCCGGAGTTTCGACCAGATTGGGGTTCAATGAGCTTTCTGATTGATTTCCTTCGGCCTACAGCTCCTGAGGGATCATCTGCTTGGTATCATCTGCTAAAGAAAGCGTCAGGGGGTTGCAATGACCTTATATATAGTGGCCACATGCT</gDNA_template>
            <first_frame> V  V  W  D  L  L  Q  L  L  T  S  E  *  T  I  S  G  L  F  L  R  H  G  M  T  G  Y  S  R  R  Y  G  P  Y  W  R  S  L  L  L  F  G  F  H  F  T  N  T  G  H  Q  S  S  V  Q  L  Y  H  L  F  S  L  C  F  F  C  S  L  L  F  F  L  K  P  F  L  S  A  L  S  L  P  F  L  V  L  N  G  T   : V  M  H  H  L  F  L  M  L  V  S  G  W  C  C  H  *  M  R  N  Y  L  K  Q  W  L  I  Y  *  E  L  V  *  L  D  Y  I  I  F  *  C  C  L  S  C  L  L  S  L  Y  S  L  N  R  L  K  L  L  V  L  G  L  V  Q  D  S  C  S  Q  W  E  S  E  G  Y  F  G  P  *  L  L  S  P  Q  F  Y  H  L  L  D  H  G  V  H  L  L  D  S  L  F  L  S  T  L  I  L  G  L  R  N  I  M  Y  H  M  P  Q  I  Q  M  P  Y  G  T  S  *  T  G  T  Q  H  M  :  L  I  L  G  N  T  I  R  S  F  D  Q  I  G  V  Q  *  A  F  *  L  I  S  F  G  L  Q  L  L  R  D  H  L  L  G  I  I  C  *  R  K  R  Q  G  V  A  M  T  L  Y  I  V  A  T  C  </first_frame>
            <second_frame>  W  F  G  I  C  C  N  C  L  H  R  S  R  L  S  P  V  Y  F  S  G  M  A  *  P  V  T  A  D  A  M  D  H  I  G  D  R  C  Y  Y  S  G  S  I  L  Q  T  L  V  I  R  A  P  F  S  Y  T  I  Y  F  R  Y  A  F  F  A  L  C  S  S  F  *  S  H  F  C  P  L  C  H  C  R  S  W  S  *  M  E  Q  :  *  C  I  T  S  S  *  C  W  S  V  V  G  A  V  I  E  *  E  T  T  S  N  S  G  *  Y  I  E  S  S  Y  N  W  I  T  S  F  S  D  A  V  Y  H  A  C  F  L  C  T  L  *  I  G  *  S  S  W  S  W  A  W  C  K  I  H  V  H  N  G  N  R  K  A  T  S  G  H  N  F  Y  L  H  N  S  T  I  C  S  T  M  V  C  I  C  *  I  P  C  S  S  A  P  S  S  L  G  S  E  I  L  C  T  I  C  H  R  F  K  C  H  T  E  R  H  K  L  G  H  S  I  C :   *  S  W  G  I  R  S  G  V  S  T  R  L  G  F  N  E  L  S  D  *  F  P  S  A  Y  S  S  *  G  I  I  C  L  V  S  S  A  K  E  S  V  R  G  L  Q  *  P  Y  I  *  W  P  H  A </second_frame>
            <third_frame>   G  L  G  F  A  A  I  A  Y  I  G  V  D  Y  L  R  F  I  S  P  A  W  H  D  R  L  Q  P  T  L  W  T  I  L  A  I  A  A  I  I  R  V  P  F  Y  K  H  W  S  S  E  L  R  S  A  I  P  F  I  F  A  M  L  F  L  L  S  A  L  L  F  E  A  I  S  V  R  S  V  T  A  V  L  G  L  E  W  N  S :   D  A  S  P  L  P  D  V  G  Q  W  L  V  L  S  L  N  E  K  L  P  Q  T  V  V  N  I  L  R  A  R  I  I  G  L  H  H  F  L  M  L  F  I  M  L  A  F  S  V  L  F  E  S  V  E  A  P  G  L  G  L  G  A  R  F  M  F  T  M  G  I  G  R  L  L  R  A  I  T  F  I  S  T  I  L  P  S  A  R  P  W  C  A  S  A  R  F  L  V  P  Q  H  P  H  P  W  A  Q  K  Y  Y  V  P  Y  A  T  D  S  N  A  I  R  N  V  I  N  W  D  T  A  Y   : A  D  P  G  E  Y  D  P  E  F  R  P  D  W  G  S  M  S  F  L  I  D  F  L  R  P  T  A  P  E  G  S  S  A  W  Y  H  L  L  K  K  A  S  G  G  C  N  D  L  I  Y  S  G  H  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54042" stop="54307"/>
                    <exon start="56350" stop="56744"/>
                    <exon start="56980" stop="57143"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLGFAAIAYIGVDYLRFISPAWHDRLQPTLWTILAIAAIIRVPFYKHWSSELRSAIPFIFAMLFLLSALLFEAISVRSVTAVLGLEWNSDASPLPDVGQWLVLSLNEKLPQTVVNILRARIIGLHHFLMLFIMLAFSVLFESVEAPGLGLGARFMFTMGIGRLLRAITFISTILPSARPWCASARFLVPQHPHPWAQKYYVPYATDSNAIRNVINWDTAYADPGEYDPEFRPDWGSMSFLIDFLRPTAPEGSSAWYHLLKKASGGCNDLIYSGHM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58648" PGL_stop="62213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58648" e_stop="58869"/>
            <exon e_start="60538" e_stop="60626"/>
            <exon e_start="60805" e_stop="60982"/>
            <exon e_start="61676" e_stop="62031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58648" e_stop="58869" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.902">
            <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60538" e_stop="60626" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60805" e_stop="60982" e_length="178"/>
          </exon>
          <intron i_serial="3" don_prob="0.834" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693"/>
          </intron>
          <exon e_serial="4" e_score="0.924">
            <gDNA_exon_boundary e_start="61676" e_stop="62031" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58648" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58648" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58652" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58652" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58669" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58673" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58714" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58785" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58801" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="62031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430577" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60544" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430644" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60817" stop="60982"/>
              <exon start="61676" stop="61967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430261" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60880" stop="60982"/>
              <exon start="61676" stop="61912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG : GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG : GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT : GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAACGGAATGGCAAACTTTGATCAACTGATGTTCAATGTATTAATAATTCACCAGATACAAAAAGCATTTGCATTGTCT</gDNA_template>
            <first_frame> Q  L  S  R  V  F  F  L  P  K  M  A  F  S  I  A  A  A  G  A  A  T  G  A  G  A  L  A  S  P  S  A  N  G  S  S  S  T  K  F  S  Y  L  A  S  L  Q  F  P  R  E  L  R  R  V  Q  I  G  N  Y  G  L  K  S  K  K  G  S  S  R  L  V  P  L  :  V  E  A  K  K  Q  T  F  S  S  F  E  D  M  L  E  N  S  E  K  P  L  L  V  D  F  Y  A  T  W :   C  G  P  C  Q  F  M  V  P  I  L  N  E  V  G  E  S  M  K  D  K  I  Q  V  V  K  I  D  T  E  K  Y  P  A  L  A  D  K  Y  K  I  Q  A  L  P  T  F  I  L  F  K  D  G  D  V  C  D  R  F  :  E  G  A  L  N  A  P  Q  L  M  Q  R  I  K  S  A  L  E  V  K  Q  *  S  *  R  A  A  F  L  V  L  E  S  S  F  *  S  Y  S  C  L  N  F  N  D  R  V  L  W  K  P  S  V  S  R  S  M  Y  L  Q  R  K  L  I  R  Y  R  C  T  M  I  N  Q  F  A  L  T  A  L  I  F  F  S  L  K  I  *  L  N  F  N  F  L  T  E  W  Q  T  L  I  N  *  C  S  M  Y  *  *  F  T  R  Y  K  K  H  L  H  C   </first_frame>
            <second_frame>  N  F  L  A  F  S  S  F  Q  K  W  H  F  L  *  L  L  P  E  P  L  P  E  P  E  L  W  L  L  H  R  R  M  A  L  L  L  P  S  F  L  T  W  L  L  C  N  F  P  E  S  F  V  V  F  K  L  G  T  M  G  *  S  Q  R  K  G  L  H  V  L  F  L  W :   L  K  Q  R  S  K  H  F  L  P  L  K  I  C  W  R  T  L  R  N  H  Y  W  S  T  S  M  Q  P   : G  V  V  L  A  S  S  W  F  L  F  *  T  K  L  V  N  R  *  K  I  K  F  K  W  *  K  L  I  Q  R  S  T  Q  L  S  Q  T  S  T  K  Y  R  R  C  Q  P  S  Y  C  S  R  M  E  T  F  V  I  A  L :   R  A  H  S  M  L  L  N  *  C  N  A  *  N  L  H  W  K  *  S  S  S  L  S  V  L  P  F  *  C  S  N  H  R  F  E  V  I  H  V  *  I  S  M  I  V  F  C  G  S  L  Q  F  L  A  P  C  I  C  K  E  N  *  L  D  T  G  V  Q  *  L  I  N  L  P  *  L  L  *  F  F  S  P  L  K  Y  D  *  T  L  I  F  *  R  N  G  K  L  *  S  T  D  V  Q  C  I  N  N  S  P  D  T  K  S  I  C  I  V  </second_frame>
            <third_frame>   T  F  S  R  F  L  P  S  K  N  G  I  F  Y  S  C  C  R  S  R  Y  R  S  R  S  F  G  F  S  I  G  E  W  L  F  F  Y  Q  V  F  L  L  G  F  F  A  I  S  Q  R  A  S  S  C  S  N  W  E  L  W  V  E  V  K  E  R  V  F  T  S  C  S  S   : G  *  S  K  E  A  N  I  F  F  L  *  R  Y  V  G  E  L  *  E  T  I  I  G  R  L  L  C  N  L  :  V  W  S  L  P  V  H  G  S  Y  S  K  R  S  W  *  I  D  E  R  *  N  S  S  G  E  N  *  Y  R  E  V  P  S  S  R  R  Q  V  Q  N  T  G  V  A  N  L  H  I  V  Q  G  W  R  R  L  *  S  L   : *  G  R  T  Q  C  S  S  I  D  A  T  H  K  I  C  T  G  S  K  A  V  V  L  A  C  C  L  S  S  A  R  I  I  V  L  K  L  F  M  F  K  F  Q  *  S  C  S  V  E  A  F  S  F  S  L  H  V  F  A  K  K  I  D  *  I  Q  V  Y  N  D  *  S  I  C  P  N  C  S  N  F  F  L  P  *  N  M  I  K  L  *  F  F  N  G  M  A  N  F  D  Q  L  M  F  N  V  L  I  I  H  Q  I  Q  K  A  F  A  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58648" stop="58869"/>
                    <exon start="60538" stop="60626"/>
                    <exon start="60805" stop="60982"/>
                    <exon start="61676" stop="61741"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLSRVFFLPKMAFSIAAAGAATGAGALASPSANGSSSTKFSYLASLQFPRELRRVQIGNYGLKSKKGSSRLVPLVEAKKQTFSSFEDMLENSEKPLLVDFYATWCGPCQFMVPILNEVGESMKDKIQVVKIDTEKYPALADKYKIQALPTFILFKDGDVCDRFEGALNAPQLMQRIKSALEVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58648" e_stop="58869"/>
            <exon e_start="60538" e_stop="60626"/>
            <exon e_start="60805" e_stop="60982"/>
            <exon e_start="61676" e_stop="61912"/>
            <exon e_start="62204" e_stop="62213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58648" e_stop="58869" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.902">
            <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60538" e_stop="60626" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60805" e_stop="60982" e_length="178"/>
          </exon>
          <intron i_serial="3" don_prob="0.834" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61676" e_stop="61912" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="61913" i_stop="62203" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="62204" e_stop="62213" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58648" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58649" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61912"/>
              <exon start="62204" stop="62210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58669" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58672" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61912"/>
              <exon start="62204" stop="62213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58672" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61912"/>
              <exon start="62204" stop="62213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58672" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61912"/>
              <exon start="62204" stop="62213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58672" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61912"/>
              <exon start="62204" stop="62213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58673" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58679" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61912"/>
              <exon start="62204" stop="62213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58714" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60808" stop="60982"/>
              <exon start="61676" stop="61912"/>
              <exon start="62204" stop="62213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60880" stop="60982"/>
              <exon start="61676" stop="61912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG : GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG : GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT : GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTA : AAAGCAAAAG</gDNA_template>
            <first_frame> Q  L  S  R  V  F  F  L  P  K  M  A  F  S  I  A  A  A  G  A  A  T  G  A  G  A  L  A  S  P  S  A  N  G  S  S  S  T  K  F  S  Y  L  A  S  L  Q  F  P  R  E  L  R  R  V  Q  I  G  N  Y  G  L  K  S  K  K  G  S  S  R  L  V  P  L  :  V  E  A  K  K  Q  T  F  S  S  F  E  D  M  L  E  N  S  E  K  P  L  L  V  D  F  Y  A  T  W :   C  G  P  C  Q  F  M  V  P  I  L  N  E  V  G  E  S  M  K  D  K  I  Q  V  V  K  I  D  T  E  K  Y  P  A  L  A  D  K  Y  K  I  Q  A  L  P  T  F  I  L  F  K  D  G  D  V  C  D  R  F  :  E  G  A  L  N  A  P  Q  L  M  Q  R  I  K  S  A  L  E  V  K  Q  *  S  *  R  A  A  F  L  V  L  E  S  S  F  *  S  Y  S  C  L  N  F  N  D  R  V  L  W  K  P  S  V  S  R  S  M  Y  L  Q  R  K  L  I  R  Y  R  C  T  M  I  N  Q  F  A  L  T  A  L  :  K  A  K  </first_frame>
            <second_frame>  N  F  L  A  F  S  S  F  Q  K  W  H  F  L  *  L  L  P  E  P  L  P  E  P  E  L  W  L  L  H  R  R  M  A  L  L  L  P  S  F  L  T  W  L  L  C  N  F  P  E  S  F  V  V  F  K  L  G  T  M  G  *  S  Q  R  K  G  L  H  V  L  F  L  W :   L  K  Q  R  S  K  H  F  L  P  L  K  I  C  W  R  T  L  R  N  H  Y  W  S  T  S  M  Q  P   : G  V  V  L  A  S  S  W  F  L  F  *  T  K  L  V  N  R  *  K  I  K  F  K  W  *  K  L  I  Q  R  S  T  Q  L  S  Q  T  S  T  K  Y  R  R  C  Q  P  S  Y  C  S  R  M  E  T  F  V  I  A  L :   R  A  H  S  M  L  L  N  *  C  N  A  *  N  L  H  W  K  *  S  S  S  L  S  V  L  P  F  *  C  S  N  H  R  F  E  V  I  H  V  *  I  S  M  I  V  F  C  G  S  L  Q  F  L  A  P  C  I  C  K  E  N  *  L  D  T  G  V  Q  *  L  I  N  L  P  *  L  L  * :   K  Q  K </second_frame>
            <third_frame>   T  F  S  R  F  L  P  S  K  N  G  I  F  Y  S  C  C  R  S  R  Y  R  S  R  S  F  G  F  S  I  G  E  W  L  F  F  Y  Q  V  F  L  L  G  F  F  A  I  S  Q  R  A  S  S  C  S  N  W  E  L  W  V  E  V  K  E  R  V  F  T  S  C  S  S   : G  *  S  K  E  A  N  I  F  F  L  *  R  Y  V  G  E  L  *  E  T  I  I  G  R  L  L  C  N  L  :  V  W  S  L  P  V  H  G  S  Y  S  K  R  S  W  *  I  D  E  R  *  N  S  S  G  E  N  *  Y  R  E  V  P  S  S  R  R  Q  V  Q  N  T  G  V  A  N  L  H  I  V  Q  G  W  R  R  L  *  S  L   : *  G  R  T  Q  C  S  S  I  D  A  T  H  K  I  C  T  G  S  K  A  V  V  L  A  C  C  L  S  S  A  R  I  I  V  L  K  L  F  M  F  K  F  Q  *  S  C  S  V  E  A  F  S  F  S  L  H  V  F  A  K  K  I  D  *  I  Q  V  Y  N  D  *  S  I  C  P  N  C  S   : K  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58648" stop="58869"/>
                    <exon start="60538" stop="60626"/>
                    <exon start="60805" stop="60982"/>
                    <exon start="61676" stop="61741"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLSRVFFLPKMAFSIAAAGAATGAGALASPSANGSSSTKFSYLASLQFPRELRRVQIGNYGLKSKKGSSRLVPLVEAKKQTFSSFEDMLENSEKPLLVDFYATWCGPCQFMVPILNEVGESMKDKIQVVKIDTEKYPALADKYKIQALPTFILFKDGDVCDRFEGALNAPQLMQRIKSALEVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="58648" e_stop="58869"/>
            <exon e_start="60538" e_stop="60626"/>
            <exon e_start="60805" e_stop="60982"/>
            <exon e_start="61676" e_stop="61913"/>
            <exon e_start="62204" e_stop="62212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58648" e_stop="58869" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.902">
            <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60538" e_stop="60626" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60805" e_stop="60982" e_length="178"/>
          </exon>
          <intron i_serial="3" don_prob="0.834" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61676" e_stop="61913" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="61914" i_stop="62203" i_length="290"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="62204" e_stop="62212" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58648" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61913"/>
              <exon start="62204" stop="62212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61913"/>
              <exon start="62204" stop="62212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61913"/>
              <exon start="62204" stop="62212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61913"/>
              <exon start="62204" stop="62212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61913"/>
              <exon start="62204" stop="62212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58660" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58669" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58673" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58714" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60880" stop="60982"/>
              <exon start="61676" stop="61912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG : GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG : GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT : GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAA : AAAGCAAAA</gDNA_template>
            <first_frame> Q  L  S  R  V  F  F  L  P  K  M  A  F  S  I  A  A  A  G  A  A  T  G  A  G  A  L  A  S  P  S  A  N  G  S  S  S  T  K  F  S  Y  L  A  S  L  Q  F  P  R  E  L  R  R  V  Q  I  G  N  Y  G  L  K  S  K  K  G  S  S  R  L  V  P  L  :  V  E  A  K  K  Q  T  F  S  S  F  E  D  M  L  E  N  S  E  K  P  L  L  V  D  F  Y  A  T  W :   C  G  P  C  Q  F  M  V  P  I  L  N  E  V  G  E  S  M  K  D  K  I  Q  V  V  K  I  D  T  E  K  Y  P  A  L  A  D  K  Y  K  I  Q  A  L  P  T  F  I  L  F  K  D  G  D  V  C  D  R  F  :  E  G  A  L  N  A  P  Q  L  M  Q  R  I  K  S  A  L  E  V  K  Q  *  S  *  R  A  A  F  L  V  L  E  S  S  F  *  S  Y  S  C  L  N  F  N  D  R  V  L  W  K  P  S  V  S  R  S  M  Y  L  Q  R  K  L  I  R  Y  R  C  T  M  I  N  Q  F  A  L  T  A  L   : K  S  K  </first_frame>
            <second_frame>  N  F  L  A  F  S  S  F  Q  K  W  H  F  L  *  L  L  P  E  P  L  P  E  P  E  L  W  L  L  H  R  R  M  A  L  L  L  P  S  F  L  T  W  L  L  C  N  F  P  E  S  F  V  V  F  K  L  G  T  M  G  *  S  Q  R  K  G  L  H  V  L  F  L  W :   L  K  Q  R  S  K  H  F  L  P  L  K  I  C  W  R  T  L  R  N  H  Y  W  S  T  S  M  Q  P   : G  V  V  L  A  S  S  W  F  L  F  *  T  K  L  V  N  R  *  K  I  K  F  K  W  *  K  L  I  Q  R  S  T  Q  L  S  Q  T  S  T  K  Y  R  R  C  Q  P  S  Y  C  S  R  M  E  T  F  V  I  A  L :   R  A  H  S  M  L  L  N  *  C  N  A  *  N  L  H  W  K  *  S  S  S  L  S  V  L  P  F  *  C  S  N  H  R  F  E  V  I  H  V  *  I  S  M  I  V  F  C  G  S  L  Q  F  L  A  P  C  I  C  K  E  N  *  L  D  T  G  V  Q  *  L  I  N  L  P  *  L  L  *  :  K  A  K </second_frame>
            <third_frame>   T  F  S  R  F  L  P  S  K  N  G  I  F  Y  S  C  C  R  S  R  Y  R  S  R  S  F  G  F  S  I  G  E  W  L  F  F  Y  Q  V  F  L  L  G  F  F  A  I  S  Q  R  A  S  S  C  S  N  W  E  L  W  V  E  V  K  E  R  V  F  T  S  C  S  S   : G  *  S  K  E  A  N  I  F  F  L  *  R  Y  V  G  E  L  *  E  T  I  I  G  R  L  L  C  N  L  :  V  W  S  L  P  V  H  G  S  Y  S  K  R  S  W  *  I  D  E  R  *  N  S  S  G  E  N  *  Y  R  E  V  P  S  S  R  R  Q  V  Q  N  T  G  V  A  N  L  H  I  V  Q  G  W  R  R  L  *  S  L   : *  G  R  T  Q  C  S  S  I  D  A  T  H  K  I  C  T  G  S  K  A  V  V  L  A  C  C  L  S  S  A  R  I  I  V  L  K  L  F  M  F  K  F  Q  *  S  C  S  V  E  A  F  S  F  S  L  H  V  F  A  K  K  I  D  *  I  Q  V  Y  N  D  *  S  I  C  P  N  C  S  K :   K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58648" stop="58869"/>
                    <exon start="60538" stop="60626"/>
                    <exon start="60805" stop="60982"/>
                    <exon start="61676" stop="61741"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLSRVFFLPKMAFSIAAAGAATGAGALASPSANGSSSTKFSYLASLQFPRELRRVQIGNYGLKSKKGSSRLVPLVEAKKQTFSSFEDMLENSEKPLLVDFYATWCGPCQFMVPILNEVGESMKDKIQVVKIDTEKYPALADKYKIQALPTFILFKDGDVCDRFEGALNAPQLMQRIKSALEVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="62777" PGL_stop="65529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62777" e_stop="63061"/>
            <exon e_start="63168" e_stop="63271"/>
            <exon e_start="64045" e_stop="64143"/>
            <exon e_start="65221" e_stop="65529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.854" e_score="0.944"/>
          <exon-intron don_prob="0.955" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="62777" e_stop="63061" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.854">
            <gDNA_intron_boundary i_start="63062" i_stop="63167" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63168" e_stop="63271" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63272" i_stop="64044" i_length="773"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64045" e_stop="64143" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64144" i_stop="65220" i_length="1077"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="65221" e_stop="65529" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62777" stop="63061"/>
              <exon start="63168" stop="63271"/>
              <exon start="64045" stop="64143"/>
              <exon start="65221" stop="65353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62966" stop="63061"/>
              <exon start="63168" stop="63271"/>
              <exon start="64045" stop="64143"/>
              <exon start="65221" stop="65529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATACTGTGGAAGCTGCAGTGCTCTGTTTAGTGCTGACGAATGCAGTGGAAGTGTACGATAAAGATGGGAGAAGTTTAGGGGTGGGTGTTTATGATGTACCATTTTCATGGGTCAATCATAGCTGCTCTCCTAATGCTTCTTACAGGTTTTGTACAGCATCAGATTCAGGAGGGATATTGGAGAGTAGGATATGTCCAGCAGCTACGGAGACTGGTGCTGCTGGCATTGGACATGAATCAATTAGTAGTAATACTGAACTTCAGAAATCCATGTCAGTTATTG : GTGGAAGTGAAGCATGTGGTCCGAAGATAATCCTTAGAAGTATAAAGGGCATCCAAAGAAGTGAAGAAGTGTTGATTTCATACACTGACTTGTTACAGCCTAAG : GTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACGATGTAGATCAATGCCTATGACTTATATGGATCATTGTCTGCAG : GAAATCTTAATTTTAAATCTCGATAGTTCAAATATGGCTACTGGTGACAACTTCTATGAGGAACATGTAATGGAGAAGCTGATTGATTGCTTGGATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCAAGAATTGTTGTGAAAAACTCGAGATCCTGCTTACTCAAGATCATGTTAACGTTCTTCTAAAGCCTGACGGAGAAAAATTACATCAACTCTTCAGATTACATCCTCTTCACCATGTCTCTTTGCATGCCATCCTGACACTTGCTTCTGCATACAAAGTCTCTGTAAGTGAACTGCTG</gDNA_template>
            <first_frame> S  I  L  W  K  L  Q  C  S  V  *  C  *  R  M  Q  W  K  C  T  I  K  M  G  E  V  *  G  W  V  F  M  M  Y  H  F  H  G  S  I  I  A  A  L  L  M  L  L  T  G  F  V  Q  H  Q  I  Q  E  G  Y  W  R  V  G  Y  V  Q  Q  L  R  R  L  V  L  L  A  L  D  M  N  Q  L  V  V  I  L  N  F  R  N  P  C  Q  L  L  :  V  E  V  K  H  V  V  R  R  *  S  L  E  V  *  R  A  S  K  E  V  K  K  C  *  F  H  T  L  T  C  Y  S  L  R :   *  *  G  N  Q  S  C  G  R  S  T  G  S  V  A  A  V  N  D  V  D  Q  C  L  *  L  I  W  I  I  V  C  R :   K  S  *  F  *  I  S  I  V  Q  I  W  L  L  V  T  T  S  M  R  N  M  *  W  R  S  *  L  I  A  W  M  T  L  *  M  T  S  C  H  L  I  T  P  R  I  V  V  K  N  S  R  S  C  L  L  K  I  M  L  T  F  F  *  S  L  T  E  K  N  Y  I  N  S  S  D  Y  I  L  F  T  M  S  L  C  M  P  S  *  H  L  L  L  H  T  K  S  L  *  V  N  C   </first_frame>
            <second_frame>  V  Y  C  G  S  C  S  A  L  F  S  A  D  E  C  S  G  S  V  R  *  R  W  E  K  F  R  G  G  C  L  *  C  T  I  F  M  G  Q  S  *  L  L  S  *  C  F  L  Q  V  L  Y  S  I  R  F  R  R  D  I  G  E  *  D  M  S  S  S  Y  G  D  W  C  C  W  H  W  T  *  I  N  *  *  *  Y  *  T  S  E  I  H  V  S  Y  W :   W  K  *  S  M  W  S  E  D  N  P  *  K  Y  K  G  H  P  K  K  *  R  S  V  D  F  I  H  *  L  V  T  A  *   : G  D  E  A  I  R  V  V  V  E  V  Q  V  Q  L  L  L  *  T  M  *  I  N  A  Y  D  L  Y  G  S  L  S  A   : G  N  L  N  F  K  S  R  *  F  K  Y  G  Y  W  *  Q  L  L  *  G  T  C  N  G  E  A  D  *  L  L  G  *  R  Y  R  *  L  P  V  I  *  *  P  Q  E  L  L  *  K  T  R  D  P  A  Y  S  R  S  C  *  R  S  S  K  A  *  R  R  K  I  T  S  T  L  Q  I  T  S  S  S  P  C  L  F  A  C  H  P  D  T  C  F  C  I  Q  S  L  C  K  *  T  A  </second_frame>
            <third_frame>   Y  T  V  E  A  A  V  L  C  L  V  L  T  N  A  V  E  V  Y  D  K  D  G  R  S  L  G  V  G  V  Y  D  V  P  F  S  W  V  N  H  S  C  S  P  N  A  S  Y  R  F  C  T  A  S  D  S  G  G  I  L  E  S  R  I  C  P  A  A  T  E  T  G  A  A  G  I  G  H  E  S  I  S  S  N  T  E  L  Q  K  S  M  S  V  I   : G  G  S  E  A  C  G  P  K  I  I  L  R  S  I  K  G  I  Q  R  S  E  E  V  L  I  S  Y  T  D  L  L  Q  P  K  :  V  M  R  Q  S  E  L  W  S  K  Y  R  F  S  C  C  C  K  R  C  R  S  M  P  M  T  Y  M  D  H  C  L  Q  :  E  I  L  I  L  N  L  D  S  S  N  M  A  T  G  D  N  F  Y  E  E  H  V  M  E  K  L  I  D  C  L  D  D  A  I  D  D  F  L  S  F  N  N  P  K  N  C  C  E  K  L  E  I  L  L  T  Q  D  H  V  N  V  L  L  K  P  D  G  E  K  L  H  Q  L  F  R  L  H  P  L  H  H  V  S  L  H  A  I  L  T  L  A  S  A  Y  K  V  S  V  S  E  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62779" stop="63061"/>
                    <exon start="63168" stop="63271"/>
                    <exon start="64045" stop="64143"/>
                    <exon start="65221" stop="65529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTVEAAVLCLVLTNAVEVYDKDGRSLGVGVYDVPFSWVNHSCSPNASYRFCTASDSGGILESRICPAATETGAAGIGHESISSNTELQKSMSVIGGSEACGPKIILRSIKGIQRSEEVLISYTDLLQPKVMRQSELWSKYRFSCCCKRCRSMPMTYMDHCLQEILILNLDSSNMATGDNFYEEHVMEKLIDCLDDAIDDFLSFNNPKNCCEKLEILLTQDHVNVLLKPDGEKLHQLFRLHPLHHVSLHAILTLASAYKVSVSELL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66562" PGL_stop="67273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66562" e_stop="66774"/>
            <exon e_start="66887" e_stop="67273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.934"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="66562" e_stop="66774" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66775" i_stop="66886" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66887" e_stop="67273" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66562" stop="66774"/>
              <exon start="66887" stop="67269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66666" stop="66774"/>
              <exon start="66887" stop="67254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66703" stop="66774"/>
              <exon start="66887" stop="67273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66705" stop="66774"/>
              <exon start="66887" stop="67273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67056" stop="67272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGAGAAGAAAATATCTGTGAATTGACATTAATTTAAGAGAAGCAATACAATATGGCTGAAGAGAAACACCAACACCATCACCATTTGTTCCACCACAAGAACAAGGAGGATGAGGGTGGACCAGTTGATTATGAAAAAGAAGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTA : CATGAGAAACACAAGGCAAAGAAGGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTATGGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTGGTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTAC</gDNA_template>
            <first_frame> F  G  E  E  N  I  C  E  L  T  L  I  *  E  K  Q  Y  N  M  A  E  E  K  H  Q  H  H  H  H  L  F  H  H  K  N  K  E  D  E  G  G  P  V  D  Y  E  K  E  V  K  H  H  S  H  L  E  K  I  G  E  L  G  A  V  A  A  G  A  L  A  L  :  H  E  K  H  K  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  D  A  K  K  E  K  K  E  V  E  G  G  H  H  H  H  H  H  Y  *  S  N  L  T  F  L  G  T  Y  G  L  Y  V  L  S  N  I  N  K  *  K  I  L  L  Y  M  C  F  V  S  N  I  N  L  S  L  D  C  M  I  W  C  F  Y  V  N  L  T  M  *  Y  F  E  P  V  W  M  G  L  I  K  A  A  L  K  K  Y </first_frame>
            <second_frame>  L  E  K  K  I  S  V  N  *  H  *  F  K  R  S  N  T  I  W  L  K  R  N  T  N  T  I  T  I  C  S  T  T  R  T  R  R  M  R  V  D  Q  L  I  M  K  K  K  *  S  T  T  A  I  S  R  R  L  V  N  L  V  L  L  L  L  V  L  W  P  Y :   M  R  N  T  R  Q  R  R  T  Q  S  M  H  T  S  T  R  *  R  K  R  L  Q  L  L  L  Q  L  G  Q  V  D  L  H  S  M  N  I  I  R  K  K  M  P  R  K  K  K  R  K  L  R  V  D  T  T  T  T  T  T  T  N  Q  I  *  L  F  *  A  P  M  D  S  M  F  C  L  I  *  I  N  K  R  Y  Y  Y  I  C  V  L  Y  P  I  L  I  S  L  *  I  V  *  F  G  V  S  M  L  I  S  L  C  N  T  L  S  P  F  G  W  A  *  *  K  Q  L  *  K  S   </second_frame>
            <third_frame>   W  R  R  K  Y  L  *  I  D  I  N  L  R  E  A  I  Q  Y  G  *  R  E  T  P  T  P  S  P  F  V  P  P  Q  E  Q  G  G  *  G  W  T  S  *  L  *  K  R  S  E  A  P  Q  P  S  R  E  D  W  *  T  W  C  C  C  C  W  C  F  G  L   : T  *  E  T  Q  G  K  E  G  P  R  A  C  T  Q  A  Q  D  R  G  R  D  C  S  C  C  C  S  W  G  R  W  I  C  I  P  *  T  S  S  E  K  R  C  Q  E  R  K  K  G  S  *  G  W  T  P  P  P  P  P  L  L  I  K  F  N  F  F  R  H  L  W  T  L  C  F  V  *  Y  K  *  I  K  D  T  T  I  Y  V  F  C  I  Q  Y  *  S  L  S  R  L  Y  D  L  V  F  L  C  *  S  H  Y  V  I  L  *  A  R  L  D  G  L  N  K  S  S  F  K  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66601" stop="66774"/>
                    <exon start="66887" stop="67072"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQYNMAEEKHQHHHHLFHHKNKEDEGGPVDYEKEVKHHSHLEKIGELGAVAAGALALHEKHKAKKDPEHAHKHKIEEEIAAVAAVGAGGFAFHEHHQKKDAKKEKKEVEGGHHHHHHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="70204" PGL_stop="71230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70204" e_stop="70402"/>
            <exon e_start="70879" e_stop="71230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70204" e_stop="70402" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="70879" e_stop="71230" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70204" stop="70402"/>
              <exon start="70879" stop="71230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70204" stop="70402"/>
              <exon start="70879" stop="71230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70204" stop="70402"/>
              <exon start="70879" stop="71230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70204" stop="70402"/>
              <exon start="70879" stop="71230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70205" stop="70402"/>
              <exon start="70879" stop="71152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70250" stop="70402"/>
              <exon start="70879" stop="71052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70250" stop="70402"/>
              <exon start="70879" stop="71052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70250" stop="70402"/>
              <exon start="70879" stop="71052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70265" stop="70402"/>
              <exon start="70879" stop="71230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG : CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</gDNA_template>
            <first_frame> V  *  S  T  I  N  L  V  K  K  I  L  *  Y  *  Y  G  *  R  E  T  T  S  P  F  V  P  P  Q  E  Q  R  G  R  R  W  S  S  *  S  *  K  K  S  E  A  P  *  P  S  P  E  N  W  *  T  W  C  C  C  C  R  C  L  R  L   : A  *  E  A  Q  G  K  E  R  P  R  E  C  T  Q  T  Q  D  K  T  R  D  S  S  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  E  R  S  Q  E  R  E  K  G  S  *  E  R  T  T  P  L  I  K  F  K  S  P  I  Y  G  L  H  K  I  N  K  S  Y  Y  I  C  I  Y  I  M  C  F  M  F  S  L  N  L  I  Y  V  Q  C  V  L  E  W  C  F  S  P  C  N  T  F  S  I  I  L  F  I  N  L  F  F   </first_frame>
            <second_frame>  F  N  Q  Q  L  I  *  *  R  K  Y  Y  N  I  N  M  A  E  E  K  Q  H  H  R  L  F  H  H  K  N  R  E  E  E  G  G  P  V  D  H  K  K  K  V  K  H  H  S  H  L  Q  K  I  G  E  L  G  A  V  A  A  G  A  Y  A  L  :  H  E  K  H  K  A  K  K  D  P  E  N  A  H  K  H  K  I  K  Q  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  E  A  K  K  E  K  K  A  A  E  K  G  R  H  H  *  L  N  L  S  H  P  S  M  D  C  I  K  *  I  K  V  T  I  Y  V  Y  I  L  C  V  L  C  S  V  *  I  *  F  M  S  S  V  Y  *  N  G  V  S  H  L  V  T  L  F  L  *  F  Y  S  L  I  C  F  F  </second_frame>
            <third_frame>   L  I  N  N  *  F  S  E  E  N  I  I  I  L  I  W  L  K  R  N  N  I  T  V  C  S  T  T  R  T  E  R  K  K  V  V  Q  L  I  I  K  K  K  *  S  T  I  A  I  S  R  K  L  V  N  L  V  L  L  L  P  V  L  T  P  C :   M  R  S  T  R  Q  R  K  T  Q  R  M  H  T  N  T  R  *  N  K  R  *  Q  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  R  K  K  P  R  K  R  K  R  Q  L  R  K  D  D  T  T  N  *  I  *  V  T  H  L  W  T  A  *  N  K  *  K  L  L  Y  M  Y  I  Y  Y  V  F  Y  V  Q  F  K  F  N  L  C  P  V  C  I  R  M  V  F  L  T  L  *  H  F  F  Y  N  S  I  H  *  F  V  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70229" stop="70402"/>
                    <exon start="70879" stop="71052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKYYNINMAEEKQHHRLFHHKNREEEGGPVDHKKKVKHHSHLQKIGELGAVAAGAYALHEKHKAKKDPENAHKHKIKQEIAAVAAVGAGGFAFHEHHQKKEAKKEKKAAEKGRHH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71034" stop="71228"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTTPLIKFKSPIYGLHKINKSYYICIYIMCFMFSLNLIYVQCVLEWCFSPCNTFSIILFINLFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="74894" PGL_stop="75070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74894" e_stop="75070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="74894" e_stop="75070" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74894" stop="75070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0094K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="76375" PGL_stop="77727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76375" e_stop="77727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="76375" e_stop="77727" e_length="1353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="77088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76446" stop="77126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76446" stop="76805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76896" stop="77554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76965" stop="77727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76965" stop="77626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77368" stop="77699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAACCCAACAAAACTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCATTGCCCATATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTCCAAGATCAATACAGAAGTCAATATCCCTATCTGGCTGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGTACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAAGACCATTAGAAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAACCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  P  N  K  T  P  Y  F  *  H  I  S  R  S  Y  P  I  F  H  C  L  N  L  R  R  I  H  H  H  S  I  L  K  N  H  V  P  Q  E  G  H  R  I  *  P  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  C  H  Q  *  I  R  S  Q  R  D  P  D  M  T  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  G  Q  K  T  S  L  Q  I  R  N  A  Y  T  W  F  *  K  Q  S  L  A  H  S  L  P  I  F  S  I  D  D  N  R  I  L  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  K  E  E  D  T  C  S  L  W  L  P  F  L  V  V  C  S  L  C  T  F  E  N  S  H  P  S  S  S  Q  T  K  L  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  A  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  K  R  *  Y  V  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  V  E  K  A  K  S  Y  P  K  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  *  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  A  I  H  N  V  N  Q  R  P  L  E  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  K  T  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  N  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  K  T  T  C  P  K  K  D  T  A  S  S  Q  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  V  I  N  E  Y  D  H  K  E  I  Q  I  *  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  A  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  H  C  P  Y  F  Q  L  M  I  T  G  S  *  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  F  *  L  S  V  V  Y  A  H  S  K  T  P  I  L  L  L  H  K  Q  N  W  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  S  K  I  N  T  E  V  N  I  P  I  W  L  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  D  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  R  D  D  T  Y  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  H  H  R  F  S  I  T  I  Q  D  R  K  L  W  R  K  P  S  H  T  Q  N  Y  I  K  I  T  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  Q  F  T  M  *  I  K  D  H  *  K  M  R  K  I  H  M  K  M  *  S  Q  G  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  T  Q  Q  N  S  L  F  L  T  H  *  *  V  L  P  N  F  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  M  S  S  M  N  T  I  T  K  R  S  R  Y  D  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  L  Y  L  V  L  K  A  V  F  G  T  F  I  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  Q  G  R  G  Y  L  F  F  M  V  T  F  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  P  R  S  I  Q  K  S  I  S  L  S  G  C  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  I  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  I  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  K  I  T  S  K  S  P  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  S  K  T  I  R  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  Q  Y  K  N  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77103" stop="77348"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGPRSIQKSISLSGCIPGRSAGNTSKNSRTTETDSIEGTWIVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76403" stop="76639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LANPTKLLISNTLVGLTQFFTVSILEGSTITPSLKTTCPKKDTASSQKLTLGEFGIKLFLPQHFQYHSQMLFMFLLAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77081" stop="77281"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRSKINTEVNIPIWLHTRKICREHIQKLTNHRNRLNRRYLDSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76572" stop="76769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNMSSMNTITKRSRYDLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="78393" PGL_stop="76948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78393" e_stop="78207"/>
            <exon e_start="77461" e_stop="76948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.930"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="78393" e_stop="78207" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78206" i_stop="77462" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="77461" e_stop="76948" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78393" stop="78207"/>
              <exon start="77461" stop="76948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAATTTTCATGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTC : GATGTAATTTTGGGTATGACTTGGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGATGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTACGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTATCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCAGCCAGATAGGGATATTGACTTCTGTATTGATCTTGGACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  F  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  S  S  G  Y  G  K  I  L  P  R  S  G  R  F   : R  C  N  F  G  Y  D  L  A  F  S  T  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  T  Y  H  L  F  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  S  *  V  F  G  C  V  P  C  R  S  S  W  Y  A  A  R  *  G  Y  *  L  L  Y  *  S  W  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  N  F  V  C  E  E  E  G  W  E  F  S  N  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  N  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  M  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  I  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  Q  P  D  R  D  I  D  F  C  I  D  L  G  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  I  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  I  F  M  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  K  *  R  L  R  Q  N  P  S  K  K  W  *  I  S :   M  *  F  W  V  *  L  G  F  L  H  N  L  R  S  W  I  V  M  L  K  R  *  C  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  Y  V  S  S  L  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  S  K  Y  L  R  L  S  R  F  R  W  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  S  Q  I  G  I  L  T  S  V  L  I  L  D  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  Q  F  C  L  *  R  R  R  M  G  V  F  E  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78392" stop="78207"/>
                    <exon start="77461" stop="76949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEANFHALSRYATQLCFSPQERIRHFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVMLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTIQVPSIESVSVVREFLDVFPADLPGMQPDRDIDFCIDLGPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPILFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="78297" PGL_stop="79011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78297" e_stop="79011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="78297" e_stop="79011" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78297" stop="79011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCATGAAAATTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTACTATCCCTTAAAGTCCGGGGGATATACTTCTCCAAAACTAGAGAATGAGGCTCAAGTCATAGGTGGTGCCTCTGTTGTTTGACACTCAACATGTGACCACCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTGCTGACAAGTTCAGGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGGACATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCAGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCTTGATCAGATAACCCTCTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTTCTCATTTTGCACTTGTTCATTCTCCCCATCCTTCCCTTCTCTTATTACTTCCTCAGTCGGTAGAGGAGTCACTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  M  K  I  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  T  I  P  *  S  P  G  D  I  L  L  Q  N  *  R  M  R  L  K  S  *  V  V  P  L  L  F  D  T  Q  H  V  T  T  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  C  *  Q  V  Q  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  G  H  P  C  G  E  P  Q  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  S  G  L  D  Q  I  T  L  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  S  H  F  A  L  V  H  S  P  H  P  S  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  *  K  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  L  L  S  L  K  V  R  G  I  Y  F  S  K  T  R  E  *  G  S  S  H  R  W  C  L  C  C  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  A  D  K  F  R  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  D  I  H  A  G  S  R  S  S  R  M  L  Y  L  Q  S  L  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  S  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  I  L  P  F  S  Y  Y  F  L  S  R  *  R  S  H  C  P  S  I  R  W  A </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  N  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  Y  Y  P  L  K  S  G  G  Y  T  S  P  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  V  *  H  S  T  C  D  H  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  T  S  S  G  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  A  V  A  A  C  C  T  S  R  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  F  S  F  C  T  C  S  F  S  P  S  F  P  S  L  I  T  S  S  V  G  R  G  V  T  A  L  V  S  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78604" stop="78858"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELADKFRLIICHYRPSSQTWKRAYFQWDIHAGSRSSRMLYLQSLRCWCRKHWRCLALIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="79015" PGL_stop="78462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79015" e_stop="78462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="79015" e_stop="78462" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79015" stop="78462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCTACCGACTGAGGAAGTAATAAGAGAAGGGAAGGATGGGGAGAATGAACAAGTGCAAAATGAGAAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGAGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTCCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCCTGAACTTGTCAGCAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGTGGTCACATGTTGAGTGTCAAACAACAGAGGCACCACCTATGACTTGAGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  E  G  W  G  E  *  T  S  A  K  *  E  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  P  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  C  Q  Q  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  V  V  T  C  *  V  S  N  N  R  G  T  T  Y  D  L  S  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  L  P  T  E  E  V  I  R  E  G  K  D  G  E  N  E  Q  V  Q  N  E  K  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  R  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  L  E  V  Q  H  A  A  T  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  P  E  L  V  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  W  S  H  V  E  C  Q  T  T  E  A  P  P  M  T  *  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  Y  R  L  R  K  *  *  E  K  G  R  M  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  E  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  L  W  R  Y  N  M  R  L  L  R  L  P  A  W  M  S  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  L  N  L  S  A  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  K  Q  Q  R  H  H  L  *  L  E  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79014" stop="78472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPLPTEEVIREGKDGENEQVQNEKLPPQPTPEMINQVLAYLRGLSDQGQTPPVFSAPAPQALEVQHAATAAPRMDVPLEIGTFPRLTTGPIMTNDQPELVSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWWSHVECQTTEAPPMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="88733" PGL_stop="89442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88733" e_stop="89442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="88733" e_stop="89442" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88733" stop="89442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCGATATACTATATTTCATTTATGTCATAAGTTTTCTTTAATTTCTTAAATCATGCGTCCAATTATTTAAAATAGGATATGTACGGGGTACTATTGTATGTGGAGATAAATAGTTGGACTAATGACGCATGAGTTCGCCCCAAATCTAAAGTGATCCTATGACTTTCTTTACGTCATACTTCATTCGTTTCAAAATAAGTGTTTTATTTTTTTTAGATCTAATTTGATCACTATTTTTTAAAAAATTAATTGGAATAGATCAACACAAAATTAGTTTTAAAATTTAAATTTAGATATTCAACAACTATTACAAAATTTACTACAAGTTACGATTATTCTCATGTGTCGATATAATGAAAAAGGCATTATTAAATGAAAATCGACTTTCACATATCATATCGAGAAGTACTAATAGAAATGACAGATAATTTGAAGCGAATGATTTGAGAAATACCTTAGATGACATTGCACCATATACTTATGGTTGATAAATGAAAATAATAAGTGTATTTTTTCTCTTACATATCTCTTCAATATCTTAGTGTTTTGTTGTTACATAAATATATATAGCATGAGAAGCATAAGGCAAAGAAGGATCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAA</gDNA_template>
            <first_frame> S  S  I  Y  Y  I  S  F  M  S  *  V  F  F  N  F  L  N  H  A  S  N  Y  L  K  *  D  M  Y  G  V  L  L  Y  V  E  I  N  S  W  T  N  D  A  *  V  R  P  K  S  K  V  I  L  *  L  S  L  R  H  T  S  F  V  S  K  *  V  F  Y  F  F  *  I  *  F  D  H  Y  F  L  K  N  *  L  E  *  I  N  T  K  L  V  L  K  F  K  F  R  Y  S  T  T  I  T  K  F  T  T  S  Y  D  Y  S  H  V  S  I  *  *  K  R  H  Y  *  M  K  I  D  F  H  I  S  Y  R  E  V  L  I  E  M  T  D  N  L  K  R  M  I  *  E  I  P  *  M  T  L  H  H  I  L  M  V  D  K  *  K  *  *  V  Y  F  F  S  Y  I  S  L  Q  Y  L  S  V  L  L  L  H  K  Y  I  *  H  E  K  H  K  A  K  K  D  P  E  N  A  H  K  H  K  I  K  Q  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  D  A  K   </first_frame>
            <second_frame>  H  R  Y  T  I  F  H  L  C  H  K  F  S  L  I  S  *  I  M  R  P  I  I  *  N  R  I  C  T  G  Y  Y  C  M  W  R  *  I  V  G  L  M  T  H  E  F  A  P  N  L  K  *  S  Y  D  F  L  Y  V  I  L  H  S  F  Q  N  K  C  F  I  F  F  R  S  N  L  I  T  I  F  *  K  I  N  W  N  R  S  T  Q  N  *  F  *  N  L  N  L  D  I  Q  Q  L  L  Q  N  L  L  Q  V  T  I  I  L  M  C  R  Y  N  E  K  G  I  I  K  *  K  S  T  F  T  Y  H  I  E  K  Y  *  *  K  *  Q  I  I  *  S  E  *  F  E  K  Y  L  R  *  H  C  T  I  Y  L  W  L  I  N  E  N  N  K  C  I  F  S  L  T  Y  L  F  N  I  L  V  F  C  C  Y  I  N  I  Y  S  M  R  S  I  R  Q  R  R  I  Q  R  M  H  T  N  T  R  *  N  K  R  *  Q  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  K  K  M  P  R  </second_frame>
            <third_frame>   I  D  I  L  Y  F  I  Y  V  I  S  F  L  *  F  L  K  S  C  V  Q  L  F  K  I  G  Y  V  R  G  T  I  V  C  G  D  K  *  L  D  *  *  R  M  S  S  P  Q  I  *  S  D  P  M  T  F  F  T  S  Y  F  I  R  F  K  I  S  V  L  F  F  L  D  L  I  *  S  L  F  F  K  K  L  I  G  I  D  Q  H  K  I  S  F  K  I  *  I  *  I  F  N  N  Y  Y  K  I  Y  Y  K  L  R  L  F  S  C  V  D  I  M  K  K  A  L  L  N  E  N  R  L  S  H  I  I  S  R  S  T  N  R  N  D  R  *  F  E  A  N  D  L  R  N  T  L  D  D  I  A  P  Y  T  Y  G  *  *  M  K  I  I  S  V  F  F  L  L  H  I  S  S  I  S  *  C  F  V  V  T  *  I  Y  I  A  *  E  A  *  G  K  E  G  S  R  E  C  T  Q  T  Q  D  K  T  R  D  S  S  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  K  R  C  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0094K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="95390" PGL_stop="98360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96777" e_stop="96993"/>
            <exon e_start="97682" e_stop="98211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96777" e_stop="96993" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97682" e_stop="98211" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="97700" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97711" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97717" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97721" stop="98180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97755" stop="98175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATGTTTTTTTTTTTTA</gDNA_template>
            <first_frame> T  R  S  Y  L  Y  Q  T  P  Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  *  *  C  F  F  F  L </first_frame>
            <second_frame>  Q  D  H  I  C  I  K  H  H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N  N  D  V  F  F  F   </second_frame>
            <third_frame>   K  I  I  F  V  S  N  T  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I  M  M  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHICIKHHTLSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96777" e_stop="96993"/>
            <exon e_start="97682" e_stop="98197"/>
            <exon e_start="98351" e_stop="98357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96777" e_stop="96993" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97682" e_stop="98197" e_length="516"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.530">
            <gDNA_intron_boundary i_start="98198" i_stop="98350" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="98351" e_stop="98357" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97989" stop="98197"/>
              <exon start="98351" stop="98357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGAT : TAAAAAA</gDNA_template>
            <first_frame> T  R  S  Y  L  Y  Q  T  P  Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  *  *   : L  K   </first_frame>
            <second_frame>  Q  D  H  I  C  I  K  H  H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N  N  D  :  *  K  </second_frame>
            <third_frame>   K  I  I  F  V  S  N  T  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I  M  I :   K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHICIKHHTLSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="96777" e_stop="96993"/>
            <exon e_start="97682" e_stop="98195"/>
            <exon e_start="98351" e_stop="98360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96777" e_stop="96993" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97682" e_stop="98195" e_length="514"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.530">
            <gDNA_intron_boundary i_start="98196" i_stop="98350" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="98351" e_stop="98360" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96789" stop="96993"/>
              <exon start="97682" stop="98037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96791" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96791" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96791" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96791" stop="96993"/>
              <exon start="97682" stop="98038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96792" stop="96993"/>
              <exon start="97682" stop="98192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96792" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96792" stop="96993"/>
              <exon start="97682" stop="98185"/>
            </gDNA_exon_coordinates>
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              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96853" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96854" stop="96993"/>
              <exon start="97682" stop="98086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96993"/>
              <exon start="97682" stop="97982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96867" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96870" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96871" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96872" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96873" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96882" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96889" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96912" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96934" stop="96993"/>
              <exon start="97682" stop="97963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96936" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96943" stop="96993"/>
              <exon start="97682" stop="98040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256690" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260930" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263609" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96957" stop="96993"/>
              <exon start="97682" stop="97995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96962" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96966" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96973" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97682" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97700" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97721" stop="98180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97755" stop="98175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATG : TAAAAAAGTT</gDNA_template>
            <first_frame> T  R  S  Y  L  Y  Q  T  P  Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  *  C :   K  K  V </first_frame>
            <second_frame>  Q  D  H  I  C  I  K  H  H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N  N   : V  K  K   </second_frame>
            <third_frame>   K  I  I  F  V  S  N  T  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I  M  :  *  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHICIKHHTLSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="96777" e_stop="96993"/>
            <exon e_start="97682" e_stop="98193"/>
            <exon e_start="98351" e_stop="98357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96777" e_stop="96993" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
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              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97682" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97700" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97711" stop="98193"/>
              <exon start="98351" stop="98357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97721" stop="98180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97755" stop="98175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAA : TAAAAAA</gDNA_template>
            <first_frame> T  R  S  Y  L  Y  Q  T  P  Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  *  :  *  K  </first_frame>
            <second_frame>  Q  D  H  I  C  I  K  H  H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N  N :   K  K </second_frame>
            <third_frame>   K  I  I  F  V  S  N  T  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I   : I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHICIKHHTLSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="96777" e_stop="96993"/>
            <exon e_start="97682" e_stop="98192"/>
            <exon e_start="98351" e_stop="98357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96777" e_stop="96993" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97682" e_stop="98192" e_length="511"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.530">
            <gDNA_intron_boundary i_start="98193" i_stop="98350" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="98351" e_stop="98357" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96789" stop="96993"/>
              <exon start="97682" stop="98037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720830" strand="+"/>
          </PGS_line>
          <PGS_line>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96842" stop="96993"/>
              <exon start="97682" stop="97841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96993"/>
              <exon start="97682" stop="98132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96849" stop="96993"/>
              <exon start="97682" stop="98128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96850" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96851" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96853" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96854" stop="96993"/>
              <exon start="97682" stop="98086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96993"/>
              <exon start="97682" stop="97982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96867" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96870" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96871" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96872" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96873" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96882" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96889" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96912" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96920" stop="96993"/>
              <exon start="97682" stop="98192"/>
              <exon start="98351" stop="98357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96934" stop="96993"/>
              <exon start="97682" stop="97963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96936" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96943" stop="96993"/>
              <exon start="97682" stop="98040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256690" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260930" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263609" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96957" stop="96993"/>
              <exon start="97682" stop="97995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96962" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96966" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96973" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97682" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97700" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97721" stop="98180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97743" stop="98192"/>
              <exon start="98351" stop="98357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97755" stop="98175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATA : TAAAAAA</gDNA_template>
            <first_frame> T  R  S  Y  L  Y  Q  T  P  Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  Y :   K  K </first_frame>
            <second_frame>  Q  D  H  I  C  I  K  H  H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N   : I  K   </second_frame>
            <third_frame>   K  I  I  F  V  S  N  T  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I  :  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHICIKHHTLSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="96777" e_stop="96993"/>
            <exon e_start="97682" e_stop="98168"/>
            <exon e_start="98351" e_stop="98357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96777" e_stop="96993" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97682" e_stop="98168" e_length="487"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.530">
            <gDNA_intron_boundary i_start="98169" i_stop="98350" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="98351" e_stop="98357" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96780" stop="96993"/>
              <exon start="97682" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96787" stop="96993"/>
              <exon start="97682" stop="98089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96789" stop="96993"/>
              <exon start="97682" stop="98037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="96993"/>
              <exon start="97682" stop="98085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96791" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96791" stop="96993"/>
              <exon start="97682" stop="98038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96792" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96792" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96793" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96796" stop="96993"/>
              <exon start="97682" stop="98156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96799" stop="96993"/>
              <exon start="97682" stop="98077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96804" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96804" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96804" stop="96993"/>
              <exon start="97682" stop="98153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96805" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96805" stop="96993"/>
              <exon start="97682" stop="97823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96806" stop="96993"/>
              <exon start="97682" stop="98038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96807" stop="96993"/>
              <exon start="97682" stop="98168"/>
              <exon start="98351" stop="98357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96807" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96807" stop="96993"/>
              <exon start="97682" stop="98096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96807" stop="96993"/>
              <exon start="97682" stop="98085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96807" stop="96993"/>
              <exon start="97682" stop="98085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96807" stop="96993"/>
              <exon start="97682" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96807" stop="96993"/>
              <exon start="97682" stop="97995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="96993"/>
              <exon start="97682" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="96993"/>
              <exon start="97682" stop="98088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="96993"/>
              <exon start="97682" stop="98077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="96993"/>
              <exon start="97682" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96809" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96809" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96809" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96809" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716702" strand="+"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96851" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96853" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96854" stop="96993"/>
              <exon start="97682" stop="98086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96993"/>
              <exon start="97682" stop="97982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96867" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96870" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96871" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96872" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96873" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96882" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96889" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96912" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96934" stop="96993"/>
              <exon start="97682" stop="97963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96936" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96943" stop="96993"/>
              <exon start="97682" stop="98040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256690" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260930" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263609" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96957" stop="96993"/>
              <exon start="97682" stop="97995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96966" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97700" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAA : TAAAAAA</gDNA_template>
            <first_frame> T  R  S  Y  L  Y  Q  T  P  Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N :   K  K </first_frame>
            <second_frame>  Q  D  H  I  C  I  K  H  H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *   : I  K   </second_frame>
            <third_frame>   K  I  I  F  V  S  N  T  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  :  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHICIKHHTLSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="95390" e_stop="95408"/>
            <exon e_start="96827" e_stop="96993"/>
            <exon e_start="97682" e_stop="98198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.978" e_score="0.526"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.526">
            <gDNA_exon_boundary e_start="95390" e_stop="95408" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.978">
            <gDNA_intron_boundary i_start="95409" i_stop="96826" i_length="1418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96827" e_stop="96993" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97682" e_stop="98198" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95390" stop="95408"/>
              <exon start="96827" stop="96993"/>
              <exon start="97682" stop="98022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96827" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96827" stop="96993"/>
              <exon start="97682" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96827" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96827" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96827" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96827" stop="96993"/>
              <exon start="97682" stop="97976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712880" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E712421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97755" stop="98175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGTAAGCGCCATTTGTT : ATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATG</gDNA_template>
            <first_frame> R  V  S  A  I  C   : Y  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N  N  D  </first_frame>
            <second_frame>  E  *  A  P  F  V  :  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I  M  M </second_frame>
            <third_frame>   S  K  R  H  L  L :   F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95390" stop="95408"/>
                    <exon start="96827" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSAICYLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="96363" e_stop="96412"/>
            <exon e_start="96841" e_stop="96993"/>
            <exon e_start="97682" e_stop="98198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="96363" e_stop="96412" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="96413" i_stop="96840" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96841" e_stop="96993" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97682" e_stop="98198" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96363" stop="96412"/>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="98187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="98133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="98023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="98004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="98003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598951" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96842" stop="96993"/>
              <exon start="97682" stop="97841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96993"/>
              <exon start="97682" stop="98132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96845" stop="96993"/>
              <exon start="97682" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96849" stop="96993"/>
              <exon start="97682" stop="98128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96850" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96851" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96993"/>
              <exon start="97682" stop="97981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96853" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96854" stop="96993"/>
              <exon start="97682" stop="98086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96857" stop="96993"/>
              <exon start="97682" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96993"/>
              <exon start="97682" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96993"/>
              <exon start="97682" stop="97982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96867" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96870" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96871" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96872" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96873" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96882" stop="96993"/>
              <exon start="97682" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96889" stop="96993"/>
              <exon start="97682" stop="98090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96910" stop="96993"/>
              <exon start="97682" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96912" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96934" stop="96993"/>
              <exon start="97682" stop="97963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96936" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96943" stop="96993"/>
              <exon start="97682" stop="98040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256690" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260930" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96993"/>
              <exon start="97682" stop="97810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263609" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96957" stop="96993"/>
              <exon start="97682" stop="97995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96961" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96962" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96966" stop="96993"/>
              <exon start="97682" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96973" stop="96993"/>
              <exon start="97682" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97682" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97700" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97711" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97717" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97721" stop="98180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97755" stop="98175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTATTTAAAATCATGCAAGAGCTCAATTAACTTCATCCGCCTTTGAT : ATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATG</gDNA_template>
            <first_frame> K  L  F  K  I  M  Q  E  L  N  *  L  H  P  P  L  I :   W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I  M  M </first_frame>
            <second_frame>  N  Y  L  K  S  C  K  S  S  I  N  F  I  R  L  *   : Y  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  *  *   </second_frame>
            <third_frame>   I  I  *  N  H  A  R  A  Q  L  T  S  S  A  F  D  :  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96374" stop="96412"/>
                    <exon start="96841" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHARAQLTSSAFDMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="96802" e_stop="98198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96802" e_stop="98198" e_length="1397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96802" stop="97439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96802" stop="97437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96803" stop="97438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="97521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96962" stop="97483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97192" stop="97799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97682" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97700" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97702" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97711" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97717" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97721" stop="98180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97738" stop="98005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97753" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97755" stop="98175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97760" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97763" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97772" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97775" stop="98163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="98172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="98197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217102" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97909" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97967" stop="98171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAATGGATTTGTTTGATTTCCTAAATAATGATG</gDNA_template>
            <first_frame> H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  V  R  *  Y  N  L  T  L  Y  I  *  T  L  L  S  I  I  Y  T  N  H  F  L  L  F  K  L  R  S  K  S  F  K  S  F  S  T  G  N  I  R  L  V  K  I  F  I  G  E  F  E  Y  I  D  S  *  *  N  D  F  I  S  S  I  H  A  K  N  L  *  L  R  T  E  E  *  P  I  I  Y  L  I  *  F  N  S  F  F  P  F  K  F  L  V  *  F  H  N  I  C  K  E  G  V  *  K  I  *  R  R  *  T  E  K  G  W  F  Y  L  R  V  K  E  F  I  F  Y  L  N  T  F  T  L  I  S  H  *  V  H  L  I  I  V  T  L  Y  H  L  Y  K  N  S  V  I  I  K  I  V  L  Q  L  L  T  L  Q  L  K  K  K  Q  H  I  E  Y  R  C  *  N  Y  S  V  L  H  S  F  Q  N  K  C  C  C  L  Y  D  M  I  T  T  D  E  N  M  S  H  E  L  E  Q  S  L  C  Y  *  L  L  F  P  S  F  V  G  D  N  K  H  K  T  K  L  A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  N  G  F  V  *  F  P  K  *  *   </first_frame>
            <second_frame>  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  W  Y  V  D  I  I  L  P  Y  I  Y  K  R  Y  Y  R  L  F  I  Q  I  I  F  F  Y  S  N  Y  D  Q  N  H  L  R  V  F  L  P  G  T  S  D  *  S  R  F  S  S  E  S  L  N  I  L  I  P  N  K  M  I  L  F  P  R  F  M  P  K  I  Y  N  *  G  R  K  S  S  Q  L  F  I  *  Y  N  L  I  P  F  F  L  L  N  F  *  F  N  F  I  I  Y  V  R  K  G  C  E  K  F  K  E  D  K  Q  R  R  D  G  F  I  C  E  *  K  S  L  F  S  I  *  T  R  L  H  *  F  H  I  K  F  T  *  L  *  *  L  S  I  I  Y  T  K  I  A  *  *  *  K  L  F  Y  N  F  *  L  F  N  *  K  K  N  N  I  *  N  I  D  V  E  I  T  Q  Y  F  I  R  F  K  I  S  V  V  V  C  T  T  *  S  Q  L  M  K  I  C  H  T  N  *  N  R  V  S  V  I  N  Y  F  F  P  L  L  L  V  I  I  N  I  K  Q  N  *  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  *  M  D  L  F  D  F  L  N  N  D  </second_frame>
            <third_frame>   Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L  G  T  L  I  *  S  Y  L  I  Y  I  N  V  I  I  D  Y  L  Y  K  S  F  S  F  I  Q  I  T  I  K  I  I  *  E  F  F  Y  R  E  H  P  I  S  Q  D  F  H  R  R  V  *  I  Y  *  F  L  I  K  *  F  Y  F  L  D  S  C  Q  K  S  I  I  K  D  G  R  V  A  N  Y  L  F  N  I  I  *  F  L  F  S  F  *  I  F  S  L  I  S  *  Y  M  *  G  R  G  V  K  N  L  K  K  I  N  R  E  G  M  V  L  F  A  S  K  R  V  Y  F  L  S  K  H  V  Y  T  N  F  T  L  S  S  P  N  Y  S  N  S  L  S  S  I  Q  K  *  R  N  N  K  N  C  S  T  T  S  N  S  S  I  K  K  K  T  T  Y  R  I  S  M  L  K  L  L  S  T  S  F  V  S  K  *  V  L  L  F  V  R  H  D  H  N  *  *  K  Y  V  T  R  I  R  T  E  S  L  L  L  I  T  F  S  L  F  C  W  *  *  *  T  *  N  K  I  S  M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S  E  W  I  C  L  I  S  *  I  M  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96827" stop="97120"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYCFRWRRRNTTTTTCSTTRTRRRRAPSTTKKKSNTINISSKSVNLALLLPVPTPWYVDIILPYIYKRYYRLFIQIIFFYSNYDQNHLRVFLPGTSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="103724" PGL_stop="104975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103724" e_stop="104497"/>
            <exon e_start="104609" e_stop="104975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103724" e_stop="104497" e_length="774"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="104609" e_stop="104975" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
              <exon start="104609" stop="104625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
              <exon start="104609" stop="104623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
              <exon start="104609" stop="104621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103739" stop="104263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103742" stop="104263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103743" stop="104427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103744" stop="104497"/>
              <exon start="104609" stop="104627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103749" stop="104398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103749" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103751" stop="104222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103787" stop="104497"/>
              <exon start="104609" stop="104791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103808" stop="104412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103808" stop="104341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103848" stop="104419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104024" stop="104388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104208" stop="104497"/>
              <exon start="104609" stop="104975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104225" stop="104497"/>
              <exon start="104609" stop="104791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104225" stop="104497"/>
              <exon start="104609" stop="104791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104225" stop="104497"/>
              <exon start="104609" stop="104791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104248" stop="104497"/>
              <exon start="104609" stop="104719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104477" stop="104497"/>
              <exon start="104609" stop="104975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG : CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTGTCTTTGATGTTGTGCACCTACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGTTTTTCTTAAA</gDNA_template>
            <first_frame> I  P  K  Y  F  V  L  L  L  H  F  F  H  T  Q  L  S  P  K  N  I  M  A  E  E  K  K  H  H  F  G  G  L  F  N  H  H  K  N  K  E  E  D  T  P  I  E  K  T  T  Y  E  E  T  T  Y  E  D  S  E  K  T  S  T  Y  G  D  N  T  Y  G  E  K  T  S  Y  G  D  D  T  Y  G  K  K  T  T  T  Y  G  D  D  N  K  Y  S  E  K  T  S  Y  G  D  D  T  Y  D  E  K  T  N  T  Y  G  D  E  N  K  Y  G  E  K  T  S  Y  S  E  G  D  D  N  K  Y  G  E  K  T  S  Y  G  G  D  T  Y  G  E  K  P  T  S  Y  G  G  D  N  T  Y  G  E  K  T  S  Y  G  G  G  D  E  N  K  Y  G  E  K  T  S  Y  G  E  K  A  S  Y  G  G  G  D  D  N  K  Y  G  E  K  T  S  Y  G  N  E  E  G  G  Y  G  G  G  V  G  A  Y  S  S  E  T  T  T  N  Y  E  E  N  D  D  S  G  T  K  T  S  E  D  Y  K  E  E  K  K  H  H  K  H  L  E  E  L  G  G  L  G  A  V  A  A  G  A  F  A  L  :  H  E  K  H  K  A  E  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  E  A  K  E  E  E  E  E  A  E  G  K  K  K  H  H  F  F  *  *  I  L  L  S  *  H  I  V  F  V  V  C  *  S  I  Y  P  L  I  N  T  Y  S  A  C  T  *  I  I  C  M  C  V  T  L  L  L  S  L  M  L  C  T  Y  F  N  L  H  E  C  E  *  Y  Y  V  Y  C  F  S  *  </first_frame>
            <second_frame>  S  Q  S  I  L  F  Y  Y  Y  I  F  F  I  H  N  C  H  Q  K  T  S  W  L  K  K  R  N  I  T  L  V  V  S  L  T  T  T  R  T  K  R  K  T  P  P  L  R  K  L  H  M  K  K  Q  P  M  K  T  V  K  K  L  A  L  M  E  T  T  H  M  V  K  K  L  V  M  V  M  I  H  M  A  K  K  L  P  H  M  E  M  T  T  N  I  V  R  K  L  V  M  V  M  I  H  M  T  K  K  L  T  H  M  E  M  K  T  N  M  V  R  K  L  V  T  V  R  E  M  T  T  N  M  V  R  K  L  V  M  V  V  I  H  M  A  K  N  L  P  P  T  E  E  I  I  H  M  V  R  K  Q  V  M  V  G  E  M  K  T  S  M  V  R  K  L  V  M  E  R  K  L  V  M  V  E  E  M  T  T  N  M  V  R  K  Q  V  M  V  M  R  K  V  A  M  V  E  E  L  V  P  T  H  L  R  L  L  L  I  M  K  R  M  M  I  V  E  P  K  L  L  R  I  T  R  K  R  R  N  I  T  S  I  L  K  N  L  G  D  L  E  L  L  L  L  V  P  L  L  C :   M  R  S  T  R  Q  R  K  I  Q  S  M  H  T  S  T  R  *  R  K  R  *  P  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  R  K  K  Q  K  K  K  R  R  K  L  R  E  R  R  S  I  I  S  S  N  E  F  S  C  H  N  I  *  Y  L  L  C  A  D  Q  S  I  L  *  L  I  R  T  Q  H  A  P  K  *  F  V  C  V  L  H  Y  S  C  L  *  C  C  A  P  T  L  I  C  M  S  V  N  N  I  T  Y  I  V  F  L  K </second_frame>
            <third_frame>   P  K  V  F  C  S  T  T  T  F  F  S  Y  T  I  V  T  K  K  H  H  G  *  R  K  E  T  S  L  W  W  S  L  *  P  P  Q  E  Q  R  G  R  H  P  H  *  E  N  Y  I  *  R  N  N  L  *  R  Q  *  K  N  *  H  L  W  R  Q  H  I  W  *  K  N  *  L  W  *  *  Y  I  W  Q  K  N  Y  H  I  W  R  *  Q  Q  I  *  *  E  N  *  L  W  *  *  Y  I  *  R  K  N  *  H  I  W  R  *  K  Q  I  W  *  E  N  *  L  Q  *  G  R  *  Q  Q  I  W  *  E  N  *  L  W  W  *  Y  I  W  R  K  T  Y  L  L  R  R  R  *  Y  I  W  *  E  N  K  L  W  W  G  R  *  K  Q  V  W  *  E  N  *  L  W  R  E  S  *  L  W  W  R  R  *  Q  Q  I  W  *  E  N  K  L  W  *  *  G  R  W  L  W  W  R  S  W  C  L  L  I  *  D  Y  Y  *  L  *  R  E  *  *  *  W  N  Q  N  F  *  G  L  Q  G  R  E  E  T  S  Q  A  S  *  R  T  W  G  T  W  S  C  C  C  W  C  L  C  F   : A  *  E  A  Q  G  R  E  R  S  R  A  C  T  Q  A  Q  D  R  G  R  D  S  R  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  E  R  S  K  R  R  R  G  G  S  *  G  K  E  E  A  S  F  L  L  M  N  S  L  V  I  T  Y  S  I  C  C  V  L  I  N  L  S  F  N  *  Y  V  L  S  M  H  L  N  N  L  Y  V  C  Y  T  T  L  V  F  D  V  V  H  L  L  *  F  A  *  V  *  I  I  L  R  I  L  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103724" stop="104497"/>
                    <exon start="104609" stop="104791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPKYFVLLLHFFHTQLSPKNIMAEEKKHHFGGLFNHHKNKEEDTPIEKTTYEETTYEDSEKTSTYGDNTYGEKTSYGDDTYGKKTTTYGDDNKYSEKTSYGDDTYDEKTNTYGDENKYGEKTSYSEGDDNKYGEKTSYGGDTYGEKPTSYGGDNTYGEKTSYGGGDENKYGEKTSYGEKASYGGGDDNKYGEKTSYGNEEGGYGGGVGAYSSETTTNYEENDDSGTKTSEDYKEEKKHHKHLEELGGLGAVAAGAFALHEKHKAEKDPEHAHKHKIEEEIAAVAAVGAGGFAFHEHHQKKEAKEEEEEAEGKKKHHFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103724" e_stop="104975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103724" e_stop="104975" e_length="1252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103739" stop="104263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103742" stop="104263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103743" stop="104427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103749" stop="104398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103749" stop="104391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103751" stop="104222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103808" stop="104412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103808" stop="104341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103848" stop="104419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104024" stop="104388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104334" stop="104911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104445" stop="104975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTGTCTTTGATGTTGTGCACCTACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGTTTTTCTTAAA</gDNA_template>
            <first_frame> I  P  K  Y  F  V  L  L  L  H  F  F  H  T  Q  L  S  P  K  N  I  M  A  E  E  K  K  H  H  F  G  G  L  F  N  H  H  K  N  K  E  E  D  T  P  I  E  K  T  T  Y  E  E  T  T  Y  E  D  S  E  K  T  S  T  Y  G  D  N  T  Y  G  E  K  T  S  Y  G  D  D  T  Y  G  K  K  T  T  T  Y  G  D  D  N  K  Y  S  E  K  T  S  Y  G  D  D  T  Y  D  E  K  T  N  T  Y  G  D  E  N  K  Y  G  E  K  T  S  Y  S  E  G  D  D  N  K  Y  G  E  K  T  S  Y  G  G  D  T  Y  G  E  K  P  T  S  Y  G  G  D  N  T  Y  G  E  K  T  S  Y  G  G  G  D  E  N  K  Y  G  E  K  T  S  Y  G  E  K  A  S  Y  G  G  G  D  D  N  K  Y  G  E  K  T  S  Y  G  N  E  E  G  G  Y  G  G  G  V  G  A  Y  S  S  E  T  T  T  N  Y  E  E  N  D  D  S  G  T  K  T  S  E  D  Y  K  E  E  K  K  H  H  K  H  L  E  E  L  G  G  L  G  A  V  A  A  G  A  F  A  L  V  N  I  L  *  F  *  L  S  T  *  Q  C  I  C  M  R  L  Q  D  *  M  T  F  S  Y  V  N  L  R  Y  G  I  *  K  F  Q  H  E  K  H  K  A  E  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  E  A  K  E  E  E  E  E  A  E  G  K  K  K  H  H  F  F  *  *  I  L  L  S  *  H  I  V  F  V  V  C  *  S  I  Y  P  L  I  N  T  Y  S  A  C  T  *  I  I  C  M  C  V  T  L  L  L  S  L  M  L  C  T  Y  F  N  L  H  E  C  E  *  Y  Y  V  Y  C  F  S  *  </first_frame>
            <second_frame>  S  Q  S  I  L  F  Y  Y  Y  I  F  F  I  H  N  C  H  Q  K  T  S  W  L  K  K  R  N  I  T  L  V  V  S  L  T  T  T  R  T  K  R  K  T  P  P  L  R  K  L  H  M  K  K  Q  P  M  K  T  V  K  K  L  A  L  M  E  T  T  H  M  V  K  K  L  V  M  V  M  I  H  M  A  K  K  L  P  H  M  E  M  T  T  N  I  V  R  K  L  V  M  V  M  I  H  M  T  K  K  L  T  H  M  E  M  K  T  N  M  V  R  K  L  V  T  V  R  E  M  T  T  N  M  V  R  K  L  V  M  V  V  I  H  M  A  K  N  L  P  P  T  E  E  I  I  H  M  V  R  K  Q  V  M  V  G  E  M  K  T  S  M  V  R  K  L  V  M  E  R  K  L  V  M  V  E  E  M  T  T  N  M  V  R  K  Q  V  M  V  M  R  K  V  A  M  V  E  E  L  V  P  T  H  L  R  L  L  L  I  M  K  R  M  M  I  V  E  P  K  L  L  R  I  T  R  K  R  R  N  I  T  S  I  L  K  N  L  G  D  L  E  L  L  L  L  V  P  L  L  W  *  I  F  F  N  S  N  F  P  R  D  N  A  Y  V  *  D  Y  K  I  K  *  H  F  P  T  L  I  F  D  M  V  Y  E  N  F  S  M  R  S  T  R  Q  R  K  I  Q  S  M  H  T  S  T  R  *  R  K  R  *  P  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  R  K  K  Q  K  K  K  R  R  K  L  R  E  R  R  S  I  I  S  S  N  E  F  S  C  H  N  I  *  Y  L  L  C  A  D  Q  S  I  L  *  L  I  R  T  Q  H  A  P  K  *  F  V  C  V  L  H  Y  S  C  L  *  C  C  A  P  T  L  I  C  M  S  V  N  N  I  T  Y  I  V  F  L  K </second_frame>
            <third_frame>   P  K  V  F  C  S  T  T  T  F  F  S  Y  T  I  V  T  K  K  H  H  G  *  R  K  E  T  S  L  W  W  S  L  *  P  P  Q  E  Q  R  G  R  H  P  H  *  E  N  Y  I  *  R  N  N  L  *  R  Q  *  K  N  *  H  L  W  R  Q  H  I  W  *  K  N  *  L  W  *  *  Y  I  W  Q  K  N  Y  H  I  W  R  *  Q  Q  I  *  *  E  N  *  L  W  *  *  Y  I  *  R  K  N  *  H  I  W  R  *  K  Q  I  W  *  E  N  *  L  Q  *  G  R  *  Q  Q  I  W  *  E  N  *  L  W  W  *  Y  I  W  R  K  T  Y  L  L  R  R  R  *  Y  I  W  *  E  N  K  L  W  W  G  R  *  K  Q  V  W  *  E  N  *  L  W  R  E  S  *  L  W  W  R  R  *  Q  Q  I  W  *  E  N  K  L  W  *  *  G  R  W  L  W  W  R  S  W  C  L  L  I  *  D  Y  Y  *  L  *  R  E  *  *  *  W  N  Q  N  F  *  G  L  Q  G  R  E  E  T  S  Q  A  S  *  R  T  W  G  T  W  S  C  C  C  W  C  L  C  F  G  K  Y  S  L  I  L  T  F  H  V  T  M  H  M  Y  E  I  T  R  L  N  D  I  F  L  R  *  S  S  I  W  Y  M  K  I  S  A  *  E  A  Q  G  R  E  R  S  R  A  C  T  Q  A  Q  D  R  G  R  D  S  R  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  E  R  S  K  R  R  R  G  G  S  *  G  K  E  E  A  S  F  L  L  M  N  S  L  V  I  T  Y  S  I  C  C  V  L  I  N  L  S  F  N  *  Y  V  L  S  M  H  L  N  N  L  Y  V  C  Y  T  T  L  V  F  D  V  V  H  L  L  *  F  A  *  V  *  I  I  L  R  I  L  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103724" stop="104512"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPKYFVLLLHFFHTQLSPKNIMAEEKKHHFGGLFNHHKNKEEDTPIEKTTYEETTYEDSEKTSTYGDNTYGEKTSYGDDTYGKKTTTYGDDNKYSEKTSYGDDTYDEKTNTYGDENKYGEKTSYSEGDDNKYGEKTSYGGDTYGEKPTSYGGDNTYGEKTSYGGGDENKYGEKTSYGEKASYGGGDDNKYGEKTSYGNEEGGYGGGVGAYSSETTTNYEENDDSGTKTSEDYKEEKKHHKHLEELGGLGAVAAGAFALVNIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103725" stop="104501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQSILFYYYIFFIHNCHQKTSWLKKRNITLVVSLTTTRTKRKTPPLRKLHMKKQPMKTVKKLALMETTHMVKKLVMVMIHMAKKLPHMEMTTNIVRKLVMVMIHMTKKLTHMEMKTNMVRKLVTVREMTTNMVRKLVMVVIHMAKNLPPTEEIIHMVRKQVMVGEMKTSMVRKLVMERKLVMVEEMTTNMVRKQVMVMRKVAMVEELVPTHLRLLLIMKRMMIVEPKLLRITRKRRNITSILKNLGDLELLLLVPLLW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103736" e_stop="104024"/>
            <exon e_start="104097" e_stop="104141"/>
            <exon e_start="104232" e_stop="104497"/>
            <exon e_start="104609" e_stop="104975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="103736" e_stop="104024" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104025" i_stop="104096" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="104097" e_stop="104141" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104142" i_stop="104231" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104232" e_stop="104497" e_length="266"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="104609" e_stop="104975" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103736" stop="104024"/>
              <exon start="104097" stop="104141"/>
              <exon start="104232" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104248" stop="104497"/>
              <exon start="104609" stop="104719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104477" stop="104497"/>
              <exon start="104609" stop="104975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATG : GTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTG : ATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG : CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTGTCTTTGATGTTGTGCACCTACTTTAATTTGCATGAGTGTGAATAATATTACGTATATTGTTTTTCTTAAA</gDNA_template>
            <first_frame> F  V  L  L  L  H  F  F  H  T  Q  L  S  P  K  N  I  M  A  E  E  K  K  H  H  F  G  G  L  F  N  H  H  K  N  K  E  E  D  T  P  I  E  K  T  T  Y  E  E  T  T  Y  E  D  S  E  K  T  S  T  Y  G  D  N  T  Y  G  E  K  T  S  Y  G  D  D  T  Y  G  K  K  T  T  T  Y  G  D  D  N  K  Y  S  E  K  T  S  Y   : G  E  G  D  D  N  K  Y  G  E  K  T  S  Y  G   : D  G  E  K  T  S  Y  G  E  K  A  S  Y  G  G  G  D  D  N  K  Y  G  E  K  T  S  Y  G  N  E  E  G  G  Y  G  G  G  V  G  A  Y  S  S  E  T  T  T  N  Y  E  E  N  D  D  S  G  T  K  T  S  E  D  Y  K  E  E  K  K  H  H  K  H  L  E  E  L  G  G  L  G  A  V  A  A  G  A  F  A  L  :  H  E  K  H  K  A  E  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  E  A  K  E  E  E  E  E  A  E  G  K  K  K  H  H  F  F  *  *  I  L  L  S  *  H  I  V  F  V  V  C  *  S  I  Y  P  L  I  N  T  Y  S  A  C  T  *  I  I  C  M  C  V  T  L  L  L  S  L  M  L  C  T  Y  F  N  L  H  E  C  E  *  Y  Y  V  Y  C  F  S  *  </first_frame>
            <second_frame>  L  F  Y  Y  Y  I  F  F  I  H  N  C  H  Q  K  T  S  W  L  K  K  R  N  I  T  L  V  V  S  L  T  T  T  R  T  K  R  K  T  P  P  L  R  K  L  H  M  K  K  Q  P  M  K  T  V  K  K  L  A  L  M  E  T  T  H  M  V  K  K  L  V  M  V  M  I  H  M  A  K  K  L  P  H  M  E  M  T  T  N  I  V  R  K  L  V  M  :  V  R  E  M  T  T  N  M  V  R  K  L  V  M  V  :  M  V  R  K  L  V  M  E  R  K  L  V  M  V  E  E  M  T  T  N  M  V  R  K  Q  V  M  V  M  R  K  V  A  M  V  E  E  L  V  P  T  H  L  R  L  L  L  I  M  K  R  M  M  I  V  E  P  K  L  L  R  I  T  R  K  R  R  N  I  T  S  I  L  K  N  L  G  D  L  E  L  L  L  L  V  P  L  L  C :   M  R  S  T  R  Q  R  K  I  Q  S  M  H  T  S  T  R  *  R  K  R  *  P  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  R  K  K  Q  K  K  K  R  R  K  L  R  E  R  R  S  I  I  S  S  N  E  F  S  C  H  N  I  *  Y  L  L  C  A  D  Q  S  I  L  *  L  I  R  T  Q  H  A  P  K  *  F  V  C  V  L  H  Y  S  C  L  *  C  C  A  P  T  L  I  C  M  S  V  N  N  I  T  Y  I  V  F  L  K </second_frame>
            <third_frame>   C  S  T  T  T  F  F  S  Y  T  I  V  T  K  K  H  H  G  *  R  K  E  T  S  L  W  W  S  L  *  P  P  Q  E  Q  R  G  R  H  P  H  *  E  N  Y  I  *  R  N  N  L  *  R  Q  *  K  N  *  H  L  W  R  Q  H  I  W  *  K  N  *  L  W  *  *  Y  I  W  Q  K  N  Y  H  I  W  R  *  Q  Q  I  *  *  E  N  *  L  W :   *  G  R  *  Q  Q  I  W  *  E  N  *  L  W  * :   W  *  E  N  *  L  W  R  E  S  *  L  W  W  R  R  *  Q  Q  I  W  *  E  N  K  L  W  *  *  G  R  W  L  W  W  R  S  W  C  L  L  I  *  D  Y  Y  *  L  *  R  E  *  *  *  W  N  Q  N  F  *  G  L  Q  G  R  E  E  T  S  Q  A  S  *  R  T  W  G  T  W  S  C  C  C  W  C  L  C  F   : A  *  E  A  Q  G  R  E  R  S  R  A  C  T  Q  A  Q  D  R  G  R  D  S  R  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  E  R  S  K  R  R  R  G  G  S  *  G  K  E  E  A  S  F  L  L  M  N  S  L  V  I  T  Y  S  I  C  C  V  L  I  N  L  S  F  N  *  Y  V  L  S  M  H  L  N  N  L  Y  V  C  Y  T  T  L  V  F  D  V  V  H  L  L  *  F  A  *  V  *  I  I  L  R  I  L  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103736" stop="104024"/>
                    <exon start="104097" stop="104141"/>
                    <exon start="104232" stop="104497"/>
                    <exon start="104609" stop="104791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVLLLHFFHTQLSPKNIMAEEKKHHFGGLFNHHKNKEEDTPIEKTTYEETTYEDSEKTSTYGDNTYGEKTSYGDDTYGKKTTTYGDDNKYSEKTSYGEGDDNKYGEKTSYGDGEKTSYGEKASYGGGDDNKYGEKTSYGNEEGGYGGGVGAYSSETTTNYEENDDSGTKTSEDYKEEKKHHKHLEELGGLGAVAAGAFALHEKHKAEKDPEHAHKHKIEEEIAAVAAVGAGGFAFHEHHQKKEAKEEEEEAEGKKKHHFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="104304" PGL_stop="103744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104304" e_stop="104096"/>
            <exon e_start="104024" e_stop="103744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="104304" e_stop="104096" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104095" i_stop="104025" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="104024" e_stop="103744" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104304" stop="104096"/>
              <exon start="104024" stop="103744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359525" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTCTCACCATATTTGTTGTCATCTCCTCCACCATAACTAGCTTTCTCTCCATAACTAGTTTTCTCACCATACTTGTTTTCATCTCCCCCACCATAACTTGTTTTCTCACCATATGTATTATCTCCTCCGTAGGAGGTAGGTTTTTCGCCATATGTATCACCACCATAACTAGTTTTCTCACCATATTTGTTGTCATCTCCCTCACT : CATAACTAGTTTTCTCACTATATTTGTTGTCATCTCCATATGTGGTAGTTTTTTTGCCATATGTATCATCACCATAACTAGTTTTTTCACCATATGTGTTGTCTCCATAAGTGCTAGTTTTTTCACTGTCTTCATAGGTTGTTTCTTCATATGTAGTTTTCTCAATGGGGGTGTCTTCCTCTTTGTTCTTGTGGTGGTTAAAGAGACCACCAAAGTGATGTTTCTTTTCTTCAGCCATGATGTTTTTTGGTGACAATTGTGTATGAAAAAAATGTAGTAGT</gDNA_template>
            <first_frame> V  F  S  P  Y  L  L  S  S  P  P  P  *  L  A  F  S  P  *  L  V  F  S  P  Y  L  F  S  S  P  P  P  *  L  V  F  S  P  Y  V  L  S  P  P  *  E  V  G  F  S  P  Y  V  S  P  P  *  L  V  F  S  P  Y  L  L  S  S  P  S  L :   I  T  S  F  L  T  I  F  V  V  I  S  I  C  G  S  F  F  A  I  C  I  I  T  I  T  S  F  F  T  I  C  V  V  S  I  S  A  S  F  F  T  V  F  I  G  C  F  F  I  C  S  F  L  N  G  G  V  F  L  F  V  L  V  V  V  K  E  T  T  K  V  M  F  L  F  F  S  H  D  V  F  W  *  Q  L  C  M  K  K  M  *  *  </first_frame>
            <second_frame>  F  S  H  H  I  C  C  H  L  L  H  H  N  *  L  S  L  H  N  *  F  S  H  H  T  C  F  H  L  P  H  H  N  L  F  S  H  H  M  Y  Y  L  L  R  R  R  *  V  F  R  H  M  Y  H  H  H  N  *  F  S  H  H  I  C  C  H  L  P  H   : S  *  L  V  F  S  L  Y  L  L  S  S  P  Y  V  V  V  F  L  P  Y  V  S  S  P  *  L  V  F  S  P  Y  V  L  S  P  *  V  L  V  F  S  L  S  S  *  V  V  S  S  Y  V  V  F  S  M  G  V  S  S  S  L  F  L  W  W  L  K  R  P  P  K  *  C  F  F  S  S  A  M  M  F  F  G  D  N  C  V  *  K  K  C  S  S </second_frame>
            <third_frame>   F  L  T  I  F  V  V  I  S  S  T  I  T  S  F  L  S  I  T  S  F  L  T  I  L  V  F  I  S  P  T  I  T  C  F  L  T  I  C  I  I  S  S  V  G  G  R  F  F  A  I  C  I  T  T  I  T  S  F  L  T  I  F  V  V  I  S  L  T  :  H  N  *  F  S  H  Y  I  C  C  H  L  H  M  W  *  F  F  C  H  M  Y  H  H  H  N  *  F  F  H  H  M  C  C  L  H  K  C  *  F  F  H  C  L  H  R  L  F  L  H  M  *  F  S  Q  W  G  C  L  P  L  C  S  C  G  G  *  R  D  H  Q  S  D  V  S  F  L  Q  P  *  C  F  L  V  T  I  V  Y  E  K  N  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104133" stop="104096"/>
                    <exon start="104024" stop="103772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFSPYLLSSPSLITSFLTIFVVISICGSFFAICIITITSFFTICVVSISASFFTVFIGCFFICSFLNGGVFLFVLVVVKETTKVMFLFFSHDVFW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104302" stop="104096"/>
                    <exon start="104024" stop="104016"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLTIFVVISSTITSFLSITSFLTILVFISPTITCFLTICIISSVGGRFFAICITTITSFLTIFVVISLTHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 743 chains have been computed
$ 
$ memory statistics:
$ 965216 bytes spliced alignments in total
$ 438 spliced alignments have been stored
$ 2203 bytes was the average size of a spliced alignment
$ 47040 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 2613 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 888 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:44:58
-->
