<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:45:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326475" ref_strand="+" ref_description="SGN-U326475        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | G-box binding factor 4 (GBF4), identical to G-box binding factor 4 (GBF4) SP:P42777 from (Arabidopsis thaliana) | chr1:1018099-1019207 FORWARD | Aliases: F21M11.10, F21M11_10(evalue: 9e-31, score=130) genbank/nr: cAMP(evalue: 3e-36, score=155)">
      <seq>gaaatcgtctgtggcttcgtcgtcttcatcctctacgatgccgaatgatttgctgaatcagcagtattctaataacgggagtaataatagtagtaatttggaggcgacttccatgacggttgatggatttttacggaatgtgtatggggaaggtcaggggacggaggctaatactttgttgaatgcgaatattacgttacttgatgctgctggagcgataacgccgatcagtgattccgagacagcgacggttagtgggatacctttggttaggaggacggtggatgatgtgtggagggaaattgtggaggggaagagggagcagagaagggccgcagttgcgggatgtaaggaggaggcagtggatgaaatcatgacgttggaggattttttggtgaaagctggagcagttgaggaggaggcactggctggggaggggccagtgcaaggtgaggtgaaggttgaactaggaactgagaggttgagtggtggaatttttgcattcgattccccatacatggccatgccgcagcagagcgtgcaaggatatggaaatggaatagatgtgattggaggtggaagagggaagaggaaagccattttggaacctttagataaggcggctctgcagaggcaacgtaggatgattaaaaacagagaatcagctgcccggtctagagaacggaaacaggcttatcaagtggaacttgagtcaatagcagttagattagaggaggagaatgaacagctgttgaaagagaaggaagagcgaaccagagcacattataaacagataatagagaaggtaattccagttgtggagaagcgaaaaccgcctcgtgtcctgcgaagagtgtgctccatgcagtggtaatatatcgttttgccacaggcatagtttaaaattaatgccttctgatatagatacagaataaaggagcctagccatgctggggttaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="13677" stop="6283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13377" g_stop="12687" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12686" i_stop="12582" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12581" g_stop="12510" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="763" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12509" i_stop="9918" i_length="2592">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9917" g_stop="9888" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="793" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9887" i_stop="6754" i_length="3134">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6753" g_stop="6583" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="964" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-U326475" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>964</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13377" e_stop="12687"/>
          <exon e_start="12581" e_stop="12510"/>
          <exon e_start="9917" e_stop="9888"/>
          <exon e_start="6753" e_stop="6583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAGGTAAAAAGTATTCTTTGCTGATAGTAGTGATCACTATTAGCCTTTCAATCTATTTTAGCTTTTTGATTGTGTGAACTGAATTTAGATTTTTGTTTATGGGCATAGGCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAGGTAATGTATTTTAATACTTTCCGGCAGTTAGACCTGTGTTTTAAATTAAGATTGACAATTGAATTATTTGAATAAAAGGTATATGACAAAATAGCTGTTTGCATTGCTTGTACTGAGACTTTGAATTGATTCAGAGAATGAAGGTTCAATGCTAATTCAATTGGTTAAGTATATCATATATCAGCTTCTTAGCATAGCGAATAAGAGATTGTCTTTTGTCTACTGCCACATCTCTTACCATTTTAAAGACAACACACCAATAATCTAATTTTGCAGCTGCAAGTTTCGATTTTTTCTATAATTTTTCAAATTTGTATGTGTTGTTTCGATAGGCTCGCTGAAGAACTTTGTTTTAGAACTAATAAAAGTGCACTAACAAAGAAATATGTGAACAAGGAGAATGATTGAGGAGGGGAAAGTCTTCCTTATGTGAACTTGATGAAAATTAATCTTCGTGACTTTTGGTAAATAAAGATGAGCACTTTATTATAAACACATCGTAAGTAAAAAGGAAAATTGAGAGTGGGGTTCTCCAGTAGTGCTGCAGGTGCACTACACACTGTTATTCCACTTTCTATTCACATATGTAAGTTATGGCAATATTAATATACAATTTTTGATGCTGGAAACCAATATATGCTGTGTAAGGTTTACCATAAATTAAACCTTGTATTAGACTATACTTGTTTGGATGGTTGTTAAGTATTGTTTCATCATGTATCATATTGTATTTTACTATATTGTTTTAATGAATACAACATTTGGATAGATTTTGTATTGTTTTCCATCATTACATAATGTCACACATCAACATTAACCTACTAGAAAAGCAGGGGATACAGTAGAGCTACTATAGTAAGGTATGGTTAAAGGATAAAATAGGTTTTATCAAATAATAAGTAAAGACAAAATGAGAGAAAAAACAGTAGTGACATGCTCACATCAAATCTGACGTTTCACAAAAGAAGACTTTTCATGGTTACCTAATTGATGGATTTAATGATACGATAAAATTTAACTCAAGTAACAAACAAAACAAACATTGTATTTAAACTAAGAAACATGTAACAACCATTTTAAAACAAGCTGTGAGATATTCAGAGATTACCTTAGTGATGCAAACTTTTATCTTGCAAATGGAACATTGCACTATAAATCATAAGTAATTTTCTACGAGCTTTATTTTTCCTTTTGCATCCCATTAAAAATCCCTTACTTGATTATGAGCGACTCCAAAGACACAGGAAAGGACCCGTATATGCAAGTGGAATATTAGTATGACTGTAAAAATACCTTGGAAATATCTTGAAGTGGAAGTTCGATGATTATTTTTTATTCTTCTTTGACTGTCTAAAAACTATTTACTTACTATTTTTGGGATAGCTAGCCTTCCATAAAATGGCATGAGTATCAAATAGTAAATCCTATTCTGTTGTTAGTTGGATAGTAGCTGAAAGCATATAATTTTGTACTGTTTGTTTTCATATTGTAAGCTGTCCCATGAAAATCAAAGTTGCTTTGTTTGGATTTTTTTCTCTCTAAAATCATTTTTTGACTAGATAGAAGTAATTGGTGATTTCCTTGTAAACATGGGTGGGTTTACCTTAGGTCAAGGCATCAAGTAGTTTCACGTGACACCACTTTGTCGGAATTTTTTTTACTAAATATCTATATATAATTAAAAGCCAAGACAAAAATAGAGGATTAATTGAGTAAAATGACACTTTTTGACACAAAGAGCCACACAACTCATTTGGTCAGTGCGTTTTCAACATAGGTTCAGGAGTTTTAATCTCGGTGTTCTCGTTTAGTGTTTAAAGTTTTTGCTCTTTAATCTACAAAGTGATACACGTCCAGGTTCGAACCTTCGACCTCTTAGTAGTTAACAAAACGTTGAACCAATTACTCCAGTGTCACATCAGTAGACTTTACCGTATATGACGTATTGAGAAGGATGTTGCTTCTTCCCTGATTAGTTGAGGTGCTGCATGTTTTCTCTTTTCTTCTTTCGTTTCATCTTGCTCGCCAATGATATGATTTGTAGAATTCAATGAATTATTTTGGGATCATTTGATGCCCTATATAAAAGTGTTCAGTAATATTTTTGATGAGGTTATTTTAATTTTTAATACTGTTAAAAAAATGAAAACTCATCAAGAAGAGTTGGTAGTAATATATGAGTTGTCTTTTATTTATAATTTTGTTCCTTTTTAATATGATGTTACATTATTTTATTTACTTCTCATTTTAAAATGTGACACTGTTTACGAAAAATCTTGCGAATGCCATTGCTTATAAAGGGTAATTGTTTACTGATGCATTAAGTAACCGTTGCTTCTTCATGGTCCTTCACTAGGCATTTTGATTAGTAGTAAAGGGGGTTCTTGGTGGGGTGGGCATGTGCTTGGTGATGAGGTGGGAACTTAGCTTCGCTAGAAAAGGTTTACTGTAGCATTTGATAATCAAGTTAAGCAATGCTGTAACATTTTGTAAGCACCTAAATAATTCCAATATGTGTTCGTCTGCATTTCTATATGTAATTGTTTTGTTGATTTAATTCTTTGAGTAACACAAGTACTTTGTAATTTTCAGGAAGAGCGAACCAGAGCACATTATAAACAGGTAACTTCTTTTGCTATTTTATTCCCTATATGTTGTGTCTGAGTGGTTCATTTTTTCCTCATGTCAAGCACTTTAATTAGAGAGTTTTTGCAAAGATTTACCCGAACGATCCCTTTGTTTCTAGCTATATATCACGTAATTCACATTTATGCCAGCAAAAATATCTGAATGGTTGAAGAACCGCTAGGTTGATACTTGAAATAATGAGGTAGTCAAGCGTTCAATTCTTCAGTTATTTATCAGTGCATACAGTATACTGAACCAATGTTCATTTGTTTCCAATTTTGTTCTTCAGTATGGGCCTGATTAATGCGCTATTAATGCATAACTAGCTGGTTCTGGCAAGTTACACTGAAAGGTGCGACTCATCCAAAAGCTGCAATAAATTAACTGTAGCTAAAGATTAGGTCCCTCCTACCAATTCATCAATTTATGCATCATTTTATTAATATGTACTACAATTTTTTTTAATATTACAAAATAGTGGTGGCAAATGAGCGGGATTAGATCAGATTTGGGCAGATTGAGCTATAAAATGGTTTGGATAGCAATTCACCCATATTAATATGGGTTAAAAGTGGATTGCGTAAAATGGCTCTTAGTGCTAACCCACTTTAATCTCCTAAAGCCAAAATTCTTAAAATCTTTGTTTCTTTTTTTGTAGTTACTACTTGACACCGGTGATATTTCTTTTTGTAATTATTCTTTTTACTTTGTCTTTCTTAATGTTACATTATTCCAGTTTGAGCCAAGATGGATTAGATTGCAATCCTCCCATATTAATATGGTGGATTGGGTAAAATGGTTCAAACCCACTATAATCTCCTAAAGCCAAAATACTGTAAATTTATAGATACCCATATTATTTTCATGATTTAAAAGTAGATTGAAATCCATATTTACCCATTTGAAATATAAATGATCCATCTCATTATAATTAGTTTAATGGACTGATTTTATAAATATGAGCTGAAATTGTCGGTTCTTATAATCTTCTCATACTATAAACTAAACAAACTACTCACTGTACCCCATGTGTTCTCTAATCTTCTCATATACAAAGGATATAAAAATTGCACAATGAATCAGCTTTTGATAAACGGATGTGGACTTCCCCTTATTTTTTTCATTATATGGAGAGGTCAAGAAGGCTTAGTTCTCATTTCCTTTAGTGTAATATCTATTTGATGTTTTGGAATTGCTTTCATCTTCCAATACCTGAATGTCGTATGAACTATTAAAATCTCTATATTCATCTAATCAATCAAGTTAATTATCTTAATGAATACCAACATTTCATCCCTTCTCTCAAATAGTGGGGAGTCGTAATTTTAGTAGTTATTTGCTAGAAATAAAATTGTGCTCTTTATGATGTGGTGATCAAGCAGCAAGAAGATGTACTCTTGCTATGCAGATCACTTTTGAACTAATCTGAAATCATATATTACTTTCTTATTAAATGATCAATTTTTCTCAAGACAATTTGTTGGACGGTCCAACTTGGACCTGTCAATTAAGATGCTATATTTATTATGTTTACTTTGTATGTGGAATACCATTAGATCCTATTTAATGCTTCGACAATTAAAAGTTTGGTGGTACCATATAACTGAGAACCGAATACCGAAGTTTAGAAAAAAAATAGATCTGAAACTGAATCATAGAACCAAATTAGTTCGGTTCTGTTTTGGTTTTTCGATATTTAAAAAACTTATGTCCACCCCTGGTCATTCATCTTGCATTACCGTACAACAATATCCTATGCGGTAAAAGGACGTCAAATATGTTTTTAAGTGATAATATAGCTCTAATCATATAAGAGAATGAAAAAAAGAAGTTAGAATATAGGAATGATAAATAATGAATGCCAGTTCAAAATTCTCAGTAACAAGCAGGTAAACACGCCTAAAAGAGAATAGGAAACAGAAAGAGGTCATCGACAGATTTCTCAATTATAATGGTACTGTTTCAACTTGTACATCCATTCACATCAAGATCTCCTTAATGCTCATACATTCCAATCCAACTGGATCTGGTATAACTTTGATATACTGACTAGCCATTATAAGATTATGATTATCCAAGAACCCAAGTGTGTGATCCACCTTCTCTTCCTGCTTGCTCATTCAACCTTTTAACTGAAAAATTATCTGTTGACATTGGTGTCATTTGCTTTTCTGAAAGATCATTTGAAGTGTCAGGAAATGCGCTTTAAGGCCTAATGATGTTCAGATAAATTGTTTTCCGAAGAATCCTATAATATTACATATTTCTGAAATTCACAAGCTCCGTTTGAATTGGTTTACATCTTAACAAAATATGTAGGTATTTTTCTAAAAGAGAGAAGTAACAATTTCTTTAGGAAAACATGTTCATTGAGTTGTGATGATAGACTCTTTCCACTTTTTAGGTGTGCAATATAGTTACGGTCTGCCTTTCTTTCTCCTAGTATTGAAGGCCCGGTAGTAAAAAGAAGTTATAATCATGTCATTCGCAGAATTGCATCTTCTATTCGGCTTGAGGAAATACATATAGCAACGAGCCATAATTTCTTTCCTTTTCATTTTTTGTAATTAGAAGTCTAAATTCCGATGTTTGCTAATAACAAACAACAAAAAATGGTCATGCTAGATGTGTGACGAACATCAAAAAGAGCGATAGTTCCATAGTGGAAGCGTATCTTGGTTTTCTTCTAGTTTTCATGCATAAAGCAGTTCTACTTTGTGCTATGGTCCTATATTTCACCCCTAGTTATTTATTGTATTGTGATGGGTAAAAGCAACTGCATGGAATTATATAGCAATTGTTACCTGTATTATGGTGGTTGTTTTTCCTTATTAATAGATCCATTGCGTAATTTGTCAGTTGTGACTGTAAGGTAAAGTTAAGTTAATATTGTGTGACACTGCTTCCCTGTTTGAGTATGCATGAGAATCTATGGCTTGCTTAAGCAGCTAATTTTTGACATTGTCATTAAGCTTATTAGTGCTTCGAAAAATAACATTAGCAATATACTTGTATAAAAAAATATACATTAGCAACATGGCCTACAAAGTGAAATTCTCCTCTGCTTTGGTAGACTAGCAGTGTAATGGTAGTACATTTAACATTTCTTGATGTTGTTTTTCCTTCAGATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATATCGTTTTGCCACAGGCATAGTTTAAAATTAATGCCTTCTGATATAGATACAGAATAAAGGAGCCTAGCCATGCTGGGGTTAAGTGA</genome_strand>
        <mrna_strand>GAAATCGTCTGTGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAG.........................................................................................................GCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCGAACCAGAGCACATTATAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATATCGTTTTGCCACAGGCATAGTTTAAAATTAATGCCTTCTGATATAGATACAGAATAAAGGAGCCTAGCCATGCTGGGGTTAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323141" ref_strand="+" ref_description="SGN-U323141        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcription elongation factor-related, low similarity to SP:P10712 Transcription elongation factor S-II (Transcription elongation factor A) {Mus musculus} | chr5:3063252-3065890 REVERSE | Aliases: MYH9.6, MYH9_6(evalue: 7e-35, score=144) genbank/nr: gi|72384441|gb|AAZ67557.1| 52O08_11 [Brassica rapa subsp. pekinensis] (evalue: 5e-35, score=150)">
      <seq>tgtccctaactcctccttctctcttttccttatgctctgtttcttagtgaacacatctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttaaagaattcaagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacagaggaaaatagtaatgaagaagatttagagatcagcaaaatcctcagaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttcaaggttcttgagaaaacaaatattggaaggcatgtaaacaagctgcgaaagcattcatcaaatgatgtaagaagacttgttaaactactcatcaggagatggaaagatattgttgatgaatgggtgagattaaatacactaatggaagacacagatgaagcgaatatttcaaatgattcatcatcttattgcgatcataagcatagcgtcgagaagaggaacaacattagtccatcgtcaaagcggctacgtgaggattacctagaagaacattatgccaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20264" stop="18217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19560" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="474" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19026" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="557" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18906" g_stop="18848" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="616" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18847" i_stop="18737" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18736" g_stop="18690" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="663" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18689" i_stop="18598" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18597" g_stop="18522" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="739" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-U323141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19026"/>
          <exon e_start="18906" e_stop="18848"/>
          <exon e_start="18736" e_stop="18690"/>
          <exon e_start="18597" e_stop="18522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAGGTTTTCCTTAACCTTCTTCTTAACACTAATAATTTTATTTTCTTCTGTATAATTAGTTACTTTATTTATATATATTCATTTAAGTTAAATATAGAATCATTTTTTGGGTAATTTTATAGGAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAGGTACATAATCATAATATTAAACAACATCTTAATTTTCCATCACTTGGTGATGAATTTTTTATTTTGTATGATCTCAAAAATCACCATTAACTTTTATTTGAACTTTTAAAGATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAGGTATTTATAATTTGAAACATAATATTTATTTTTAATTCTAATTTATTATATACTTTTAAGTTTCGTAAATATTAATCGTTAAATGAAAATAGCATAGCGTCGAGAAGAGGAACAACATTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCTAGAAGAACATTATG</genome_strand>
        <mrna_strand>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG.......................................................................................................................................................................................................................................AAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAG.......................................................................................................................GAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAG...............................................................................................................ATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAG............................................................................................CATAGCGTCGAGAAGAGGAACAACATTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCTAGAAGAACATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337779" ref_strand="+" ref_description="SGN-U337779        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcription elongation factor-related, low similarity to SP:P10712 Transcription elongation factor S-II (Transcription elongation factor A) {Mus musculus} | chr5:3063252-3065890 REVERSE | Aliases: MYH9.6, MYH9_6(evalue: 1e-30, score=130) genbank/nr: gi|72384441|gb|AAZ67557.1| 52O08_11 [Brassica rapa subsp. pekinensis] (evalue: 2e-31, score=139)">
      <seq>tgtccctaactcctccttctctctttcccttatgctctgtttcttagtgaacacatctttttttcttataatttaagaaacaacaacaacatggaattggatgaattacgtctaatcttacagaattcgagtgtggacttgtggggtttaattgacacagcaatttctgtagccattcttgatcatggaaacgagcttcgcagtcgaagagacgccattgttgagaaactctatgttcctctgctttctaacaattctaattctgatggaaattatgaaatcatgaaaagaattgagagaaatatcgatgatgacaagttaaaaacataggaaaatagtaatgaacaagatttacagatcagcaaaatcctcacaatcaagaaccattttgaaatcccaaatcagtctgagaaatgcttggttgatcagcttcaaagtcttgctgaaatggacattaatttctaggatcttgacaaaacacatattggaaggcatgtaaacaagctgcgaaagcattcatcaaatgatgtaagaagacttgttaaactactcatcatgagatggaaagatattgttgatgaatgggtgagattagatactctaatggaagacacagatgaagcgaatatttcgaatgattcatcatcttattgcgatcataagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="20264" stop="18390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19560" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19408" g_stop="19340" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="474" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19108" g_stop="19026" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="557" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18906" g_stop="18848" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="616" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18847" i_stop="18737" i_length="111">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.760" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18736" g_stop="18690" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="663" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-U337779" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19560"/>
          <exon e_start="19408" e_stop="19340"/>
          <exon e_start="19108" e_stop="19026"/>
          <exon e_start="18906" e_stop="18848"/>
          <exon e_start="18736" e_stop="18690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAGGTTTCTTTATACTACTTTGGGTTTTGTTGAACCATTTTGTTGAATATAATAAAATCATGACTAATTTTTAAGAATGAATTAGGCCTAATATCTAATTTCACGAATTTTATTTACTTTTTGCTAAGATTAAAAATTCTTTTGGAAATTTCAGTCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAGGTAATTTAATTAACAATCATGATTTTATTATAGAATAATTATTTGGCCAGAATGATATTTAAAATTATGTTTGTTAACTTTAATACTTTTTAATTAAAAATGAAAAAATAAATTAAATTAATTTATTTTAAAATAAAAGGATATTAACTTTTTAGAAAATTTAGGACAATTTAGCATTATCCTTTTAAATTTATTTTCTGTTATGATTTTATATTTTTATTGCTTTTGAAGAAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAGGTTTTCCTTAACCTTCTTCTTAACACTAATAATTTTATTTTCTTCTGTATAATTAGTTACTTTATTTATATATATTCATTTAAGTTAAATATAGAATCATTTTTTGGGTAATTTTATAGGAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAGGTACATAATCATAATATTAAACAACATCTTAATTTTCCATCACTTGGTGATGAATTTTTTATTTTGTATGATCTCAAAAATCACCATTAACTTTTATTTGAACTTTTAAAGATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAG</genome_strand>
        <mrna_strand>TGTCCCTAACTCCTCCTTCTCTCTTTCCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTACAGAATTCGAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACATAGGAAAATAGTAATGAACAAGATTTACAGATCAGCAAAATCCTCACAATCAAGAACCATTTTGAAATCCCAAATCAG.......................................................................................................................................................TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCTAGGATCTTGAC.......................................................................................................................................................................................................................................AAAACACATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAT.......................................................................................................................GAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAGATACTCTAATGGAAGACACAG...............................................................................................................ATGAAGCGAATATTTCGAATGATTCATCATCTTATTGCGATCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323229" ref_strand="+" ref_description="SGN-U323229        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | UDP-glucose:sterol glucosyltransferase, putative, similar to UDP-glucose:sterol glucosyltransferase (Arabidopsis thaliana) GI:2462931; contains Pfam profile: PF03033 glycosyltransferase family 28 N-terminal domain | chr1:16427872-16432606 REVERSE | Aliases: None(evalue: 1e-146, score=516) genbank/nr: sterol(evalue: 0, score=698)">
      <seq>cctttttaagtcttggattgagcagaaaagaagacttttttcatcagtttttcaagaatatttagtgtgaagtgattagcattctctttgataatcttaatgagttttgatgcacaggattgtttatgaattctttggttgctgaatttgcaagttttttatgttagttgctgaatctggagtttagttgaatttgagttctcttacagttgtttgcgaagcttgaaattttagaagagtaggtgttcagtttggtgaatttaagtggttttggagttcatcatttgaaatggatagtagtgggcttaatggaaatcagagtacaagggattcagaagtaccgaacaatgctgatgaacggtgtgatgctaccttttccgatgaattagatggctggagaacaagttcttcatcacttaaggacattaggtcttcagatgagcatactgatgagtgtttgactccagaaatgaaatacgagagcacacatcggagttctagtcctccgcctcaagctcggagaggtttggagcactgcattactgcacctgtgactattggcggaggtcttttccctgaaggccaggatatggcattttcaagatctttgactgagaggagggttagtccaagacataatgtaatattggatagactttctgaacgtggaaagcaaaagctcatcgcagagctggtaaagatccaaggggatggaacagtagaggttgaccttactaagagtacgcctgaaacttctgaattgttggagctgcgatctgttgaagaacccactcttactgtagacaggattatcacagattttaataagtcagttccaaagttgaaaatcgtggtgcttattgttggaaccaggggagatgttcaaccatttttggctatggccaagagacttcaggcgtttggtcatcatgtcaggctggcaactcattctaacttccgtgattttgtcaaatcaggaggcatagactactacccattgggtggtgatcctcgggtattggcaggatatatggccaggaacaaaggtctcattccttctggaccaggagagatatctgtacaacgaaagcagctaaaggctataattgaatctcttcttccggcttgcactgagccagatattgaaactggtgaacctttcagagcacaagcgattattgcaaatcctcctgcttatggacatgcacacgttgctgaagctcttggggtacccctccacatcttcttcacaatgccctggacgccaacttctgaatttcctcacccgatggctcgtgtacctcaacctgctgcgtattggctttcctacatactcgtggatttacttgtctggtggggcataagaggctacatcaacgattttaggaaaaagaagttaaaccttcctcctatcgcctacttcagtacataccacggatcaatttctcacttcccaactggctacatgtggagtccacatgttgtgccaaagcctaaagattggggctctttggttgatattgttggctattgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="39543" stop="49356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39843" g_stop="39945" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39946" i_stop="40595" i_length="650">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40596" g_stop="41016" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="524" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41017" i_stop="42829" i_length="1813">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42830" g_stop="42978" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="673" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43917" g_stop="44159" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="916" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44160" i_stop="44996" i_length="837">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44997" g_stop="45108" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="1028" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45109" i_stop="46136" i_length="1028">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46137" g_stop="46307" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1029" r_stop="1199" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46308" i_stop="47488" i_length="1181">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47489" g_stop="47552" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1200" r_stop="1263" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47553" i_stop="48382" i_length="830">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48383" g_stop="48440" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1264" r_stop="1321" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="48441" i_stop="48530" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48531" g_stop="48708" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1322" r_stop="1499" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="48709" i_stop="49017" i_length="309">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="49018" g_stop="49056" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1500" r_stop="1538" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U323229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39843" e_stop="39945"/>
          <exon e_start="40596" e_stop="41016"/>
          <exon e_start="42830" e_stop="42978"/>
          <exon e_start="43917" e_stop="44159"/>
          <exon e_start="44997" e_stop="45108"/>
          <exon e_start="46137" e_stop="46307"/>
          <exon e_start="47489" e_stop="47552"/>
          <exon e_start="48383" e_stop="48440"/>
          <exon e_start="48531" e_stop="48708"/>
          <exon e_start="49018" e_stop="49056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGAGTAAGTGTTCCTCTACAACCCAACAAAGGAATGAAGCTTCTTTTATCAAAAACTGCACACTATCTTGGTGTTTTTTTTTTCTAGCTTCCCTCCATTTTCATCCATAAGAAAACCAATTATTGATGATAATAATCTCCAACTTTGAATGAGTTTTTTCAATCTATAAGACGAAAATGATAAAGTTGCTTTCTTGGTAATTACATGTTGGACACCTGGTAGTTGAGTATTCACTTTCTTTAATGATTGAATCGCCAAAAGGATTAGTCTTTTTGGTATCTTCTGTTATGTGGGGTTTTCCTTTTATGCAACTTCTTAAACATATTTGTTGTTTGTAGTGTTCCTGGTGTGCTCTATTTGATAATATGATGTATTTTGTGAGTTTCCTGTAGATGTTGTTATAATTACTATTCTTTTTGAAGTTTGTGCTGATTTTATACAATGCGATGCTGTTGACTGTTTGGTTGTGTTTCTTTCTTCTTTCTAATTGGTTGTTGCAGAGGGTAGATTAGCTTTTAACATTGCTTGTGGTGTAGTTTGGAAAGTTTTAGCTTTAAATCAAGATTTGTTTTTTCATTGTGGGGTTGCTGAATTTTGGTGAATGGAAGTGTTCTGCATTTTGGGGTTGCTGATATTTTCTCATTTCTTAGCAGGTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAGGTTAGTGCTTCATCTTCCTAAGCTTTTCTCTGTTGATAAATAATGAATTTGAGAAAACCTGCTACAGATTCTTCCTTGTGCATTTAGTTTAGTCTTCTCTCAATAAATTTAGAATAAGAGTCATGATCTTGGCAAAATGTTATATTGACAAGGATGTAAATGATAGTTAGAGGGGAGAAGTATGAGCGAGTGCCAAGTTACTGGGATAGTAGGACTTCAGAATGATCCTGTGGTTTTTTCTAAAAAAAAACTTTTTTGCTTTTTGTTTCATAATGCTGTTCACTAGGGTGTAATTTGTCTTTGTGGGACGAGTATACTAATAAGTATAATTCTTCTTTGATTGATAGTAAAACTATTTCTTGTGTTGTATCTTTATTCTATTTAATATAAAGTGAATCATGTATGTGTTTTTGTTCTATGTTGGATGACAAAATGGTCTAGGAAACTATCTTATTTATGATGTTAAGCATCATTGTTGTCCTCTGGCTAACAGTTTGATGAATGGAACTATTATTTTCTGTCCCACCAAACGGGCTGGTTCCTTTTCCTTTATTATTCTCTCTCATTACTACTTGTCATCTATGAAATCAATCTAGAAGGAGTTCAAATAATCCTATCTAGATCGACATGTAAGCTTAGTTGTGAATTTCAGACTATTAAGGCTTGTCCTATATTACTCAGCAAGCATTATAGAAAAGATGAGAGTAACTTTTCCTGTCATAGACCTGTATAAATAAATAAAAGTGTTCTGGCTCTAAGTTTTAAGTATATAACTGTGCCTCATCTTACAACTCTGTTCTAAAAGGAGGGTTCATTGACATTTTTCATCTCAAGGTCAAATTATGCCCTTGTCATCCTTTTCTGTCTCTGGAATTCCTTGAGCTAATACACCTCTGTACAGCTATCTGTCGAAAGTCTTGCTTCCTTATAATTGACCATCTGGTTGTTGATTTTGGTTCAAGTTACTTTAAGGGTCACATATTCTATGAAGAGACTGAACTTTTTTTGGGGCTGCAGTGTCTTGCTCGAGTTTCATGAGCTAAATTATATTCACCTGCTTGTTTGGTCCAAATGTGAAGAATTCTTTCCAGTGCTCTATATTCCAAGTTTCACCGCTACCCCTACAAAGGAAAACCAATGCATCAACGAAATTAATGACAAGCAAAACTAACATCATTTGTGGAGGACAGGGTTTGACAGACAACGATGTCAAACCAAGTTACTAAAAGATGGAACCTTGATTTAAAACCAAACATGAAAAATATCAAATACCCAAAAGTCTCCAGAGAACTAACTTTAACTGCTCCGTCTCCTTACAAGAGAAAAATGCTTTTGCTCACGGTTTCTTCTATGCTTCCCTCAAAGCTAAGGTACATTATAGACTTCCTCCTTTGTCACTTCTCACATCAGCTCCACTTTCCTCCCTCCAAAGCAAAAGCTATCTCCTGTATCACATTTAGGATATTCTGCCAGTATGCCGTATTGCTGACAATGATTTCATGTATAGAGTGGCAAAATACTCATGAATTAAACTTGGGAACCTCTTAGCATTGTCTTTCTGAAAATTTAGTAGTAAGAAAATATTGATTTGGTCTTCTATAAGCAATTGAAGCAAATCGTTGCTGCATATGATTCTTTGTTTTTTCTTTTCTTTGCTTTTTCTCTTCTCTTTTGCGTACTTGCTTCAGAAGGGCTTAGACATTTATATCTATGTTGATTGGATAAAGCTGACTATTGTGGTTTACTGGATTAGATGTATTTCTTTCTCATACAGGACTTTTGCATTTTTTTTTTTTTTTTGTTTAACTTGTAGGTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAGGTAATTTTGTTATTGACGTCTCCAGCTTTGAGATGCCTATTATCCGACAACCAATTGTGTAGTGCTTTGCTGTGAGATTCTATAATAGTCAACATGGCGTAGGAGTTGAATAGATTTACTAGTCTTGGTTACGATATGCATGTAAATGTGTCAAAAGTTGTTGCAATTTGTTAGAGTTTAATATTTTGTCCTTGACACTAGTTTTGGCTTGAATTTGTTTGATTTGATTGTAAACTTGAAGCATGGAAAGATCCTTTAATGTTGGAGAGTGATAAGGAGTAGAAAAGCTGATATGGGAAGTGCTAAGTGCATGAATAACGAGACTGCTTGTTATCTGAATAAATATGATTTACCTGAACCAATAAAACTTAAAAGAATCCTAGAATGCTGAGCATTATTTTTTCAAATGATGCTTAGACCATGTGAAGCTGGCAATTTGTATTGACCAAGTACTTATTTAGACTTACTGATACAAAATTTACTTTGACCATTTGGTTTTTGAGCTATTTTTTTGCTTTTAACTGATGGAGTTGATATGTATGTTGTAGGGCTCCGCTGAGTCAAGTTGCTATTTAATAAGTGGCTGAAACAAAACCACCCTCTTTAACAAAGTCAATTTTTTCTGCACATAATCACATGTATCCGGCCTGAATCACCGCTTCATACATTAGGTTGTCCATGCCTGTATATGTAAAAATAGCAGCTAATCAAACAGGTTAAGAATTCTTGCTATTTGCCTATGTAAGTATGGATTATGGAGACCCAGGACTGCCCCTCTGCAGCGTCTGAAAGAACCACCACAAATTACTTACATGTGTTTTTTTACTTTATCCATCTGGAAAATGATATACCTTTTCATTTTCTTGCCATTAAGTTGCTGAATCCTTCTTATTCACTTACCATTTCCTCATATTTCCTTCTGTTCTTAATGTCACCAGCAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAGGCATGTTGGGAGTTCTAAATCACCATGTTTATAGCTGTACTGGTCATACATGTTCTATATCGTTTTCTTCTTAACCATCTGTGCTTGCCTTTATTATTATATCATTGCATTCTATGTTTTTCAGCATCCTTTACAGAATAACCCAAATTTCGGCTTTGAATGACAATTCGTTGGAGAGGTCTGTTAGATGGACTTCTAAGTTCTATTTTACTAGACTTAGTTTCTCCACTTTTCAAGTCTTCTTAGTCACCAACTTTTAAAATTGATTGTTGAGATGCTGTAAGGTAAAAGGATTAGATTGTGTCCCTTGGACCTGGGTAAACCAATTGAGATTTCATTTGAGAATATATTGACGGAGAGAATTTTTAGAGGTGAATTTGGACCTATATGGTTGAAGCAAGTATCAAAAACAAAGGTCACTTGGACCTTGCAATTACTTTGCGCAAGGAAAATTTTGTCTGCTTCAGAGCTGAGGTCTTTTGCTGCTTGACTGGCAAAACATTCTTAATATGCTCTTTACAGTGTGGGTACCATTGGATTTAATTTCTTTTCCTGTCTAAGGTTGGTTTAGCTTTATTTCTTGCTGTTGCCTCTTCTGGAGCACGATTATTTATTTGCCTATTATTTAATTTTCTCATCATTTTTGTGGCCAATATTGGACATTCATGTGAAATAATTGATTATATTTCAACTATAGATTTTGTGTTTCCATATTTCGTGTAGTAGAATTTTGTTGATGTTTGTGCACCTTAATATCTTTGTATTTTGGTTGAGAAAATTGTTCATTTGTAGAGTAAATCGTTCGTTCCTTTTCTAATCAGTTTTATGCATTGACAGGCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGATGTAAGAGGTCTTTGGCATGCTTCTTCGTTTTTCTCGTTCTTGTTTTTGTCTATGTTATGAGTACTCTGCTATGGGTATGTATTAGCCCTTTCTTTCTGGGTGGGTAAGTATCTGGTATGAGTAAACATAGTTTTCTGCAATTTTGGGGTGTGCTTCAAAGAATCCACATAAAGTTCTCACATGTGTTCCACACACGCCCTCCCCCCACATCCCTTGCACGCCCAAGACTAGACGAAGCATGGATATCATAACATAGTGCCCTACATTAGGTAACACAATAATGATGATGGGAGTGGCTCTAATTAGTGTTATCAAAAGCAAAAAGCGCAAAAAATCTCTAAGATCTGTTGGGCATTTAAGCGCAACTAACGTGTGGGCTTTAATGAAAAAAAGAGCAAAGGGAGAAAAAATGCAAAGCTATGTTTAGTCCAAGATTAATAATTATAAGCACGAAGGAATGACAAATATATGAAGAAAGAAACTGAAAAAAATAATATGATAAAGTAAAATATCAATTTTTTAGTGCCGCCTCTTCTAAAGAGGCTCATTGGCAAGAAAATGTATGTCATATAACCTTGACGAGGAAACAAAATCGCACCTTAAATAAGTCGAAACACTTTTTGAGCCTCGCATCAGGGCGCCTTTGACAACTCTGGCGCTAATACCAAGCTAAGAAGATGGGTTTAGGCCTAAGTCAATCTCAAAAGTTGGTTCATGCGGTAAGGGTTGCCCAAATCACTAGGAGACTATAGCCACACTTTCAACCAATGGTGAACACTAACATAATCCTATGAGCAATCGTGGTAATATCAAGCTTCTACTTTTTTCCTTTTAGTTAACTTACGCACAGTTTGAAAATTTTTCTTAAATTTTTGGGAAGTTTTCAACATACTTAACAGTCAAATTTGTACTGGAATCTAGTATGAAATAAGTGGCTCATCACATACCTGTTCAAGTAGTAATATGGAATTCCTGTTTGCTGATATCATTTAATATGGATTAAGTTCGTATGTTCTGTGGAATTGCAGATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATGGTGAGTTCGAAAATAATCTCTATACTCACCACTCATTTCACCTTTTTGATATCTGGACATCTAATTCATGTTTGGTCCATGATTTATAATATCACATGGAGTTGTACATCACTGCTAGTTCTCCAAAAGATACATTTCTGTCTTCTCTTGTTTTTCTTTTTGGGGTGGGGGTGGCGGGTGGTGGTGGTCATATTTTGCCATCATAGAGAACATATGTTTGACTAAATTAGAAAGATATATGTGAGATACTATAAGTAGAGGAGCTACTATATTCTGAGATGGTCTCTTAGTCGCATTGTGGAATTTATCTTAGAAAGGATTAACATGAAGTCAACAAATATGAATTAAATGAACATATTAGTGTGTATGAAGTGAGGATGGGTCACTATGACCTCCGGACACAAGAATCTCAAAGATAACCTTGAAATCATACTCAGGTTAGAATCGTTTGAAATGTCTTTGGCCAAATAACTCTGTTTATTTACTATGAGTTTAATCTCATTTGACTCTTCTAATGTGGAGACCAGAAGCTATCTAGTTTTGACCTTGGGAGGAGTTAAGTCTGAAAAGTTACTCCACCGCCTTAGCTGGGTTTGACTGTTCATATGTTACATATTTAATCTCACACTATCTTCACAGTGCTCCTCTGCTTCTTTTCAATTAGAGTAGACCTATGTCAAGAAGTTGAGTTATTAGCCTATAAAGAAATCCACCTGATTGTATTTTCTGTATCAAATTCACGAGCAGTGTTAATCTGCTTCGAATAAGTACAAGCCCTTCCAAACTGAAAAACTTATTTTGGGAGGTCATTAGCTGAATCTATGGAGGTGTGTATTCTGCACAGCTTTGGCAAGTTGCAAACCGGTTTGGGTTTACTAAACAAAGAGCTTAGAAGGAAGAAGACTTAATCTTGAGCTTGTGCTCTGTAAATAAATGTCGAATAAAATATAAACTGCTTTATATGGTTTTCCTCAATGGTCCCCAAAACAATATTCATTTTTATGCTTTCCGGGACTTTATAGACTCCTTGTATCATAGATAATTCTAGTCCATCAATTGTACAGATATCAGCAACCTCTTGCTGCTATTTTTGTTAACAACATTTATCAGGATTAGTCAACACAACAGGATGCGATTTAGTCCAAGTCAACTTATAAGCATTGTTTTATTTTTTTGGACAGGACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACAATGCCCTGGACGTAAGCTCTGATTGACACTTTAACTTTATTTTATTGGATATTTCGTATTAACAATATGACAAGTGGATGCACCTGCAATTGCTGTCTTTGTCAATATGCGACCTTGTAAAGTCCATTCCTCTTATAAAACATTGATGAAACAAAATACTGCTATCTGATTTCTATTTTCTTTTCTACAAAAGTTTCCTCTTTGAGAAAAGCCAATTTGTAATAGGTGGTTGTTCTTCACTATGTGAATGTTTTTTAGATTTGATATTGACTAGACCATTATAAGGTGGCATTTGATACCTTACTCGGCCTTGTGGTTAAGATCAAGTGTAGTTTCTGTTCTCACCAGCTTTAACATCTGATACATGGACACTGGCCCACATTATATCAACCATTGGCGTTTCATTTAAAAAATTGAGAAACAGTTTTTGCAAAATTCTTCTAGTTACAACAACCATACGAAAGAAACGTATGAGTTTTGCTACTTTATTTAGATGGAGTTTTGGTTGAAACACAATTTTTGAAATTCCTCAAACTTTTCTTAGGTGGAGCTGCATCGGACACAATTTTTGCTGAAACTTGAAAAACTTTTTGCAGAAACTGCTATTTAATATTTCAATTGAACGCCTTAGTCTGTGACATACAAAGATTAGATGCAAGTGCCCAATTTCTGGAGTAGTTGGTTCTTCTGAATTAGGAAGTTTTATAGATCAATTGGAAGAACTATTATGCACATAGGATATTATGCGAGTCAGTTGCTGAGTTCAGTGTCATTCTTCATTAAATTCTCCCATTTAATATTTTCAACAAGGTACCTTCTCATAGACTTTGTTAATAGACAGGCCAACTTCTGAATTTCCTCACCCGATGGCTCGTGTACCTCAACCTGCTGCGTATTGGGTATGTTATCAGTTTCTTCTTTTGAAAAATATTTTTCCAGTAATTCTTCTGATTCCTGTTAAAACTCTATTTGTCTTCTGCACATTTCAGCTTTCCTACATACTCGTGGATTTACTTGTCTGGTGGGGCATAAGAGGCTACATCAACGATTTTAGGAAAAAGAAGTTAAACCTTCCTCCTATCGCCTACTTCAGTACATACCACGGATCAATTTCTCACTTCCCAACTGGCTACATGTGGAGTCCACATGTTGTGCCAAAGCCTAAAGGTATATGTCAGCTCCTCAATGGTATCTGGATGCTTGTTTTCGTCGTATTGGTCATTCCACTTCTTTTGTTGAAGCAAAACTAATGATTTGTAAATCTCAAAATGAACGGATCAGTTTCTTGTGGAGTATTTCTGTGCTAGTCTCTCTTTCTTCATTCCCATTAATCCCCTTCCCCATCCCTGAATTCATGTAAAGATCTTTTCTTCTTTTTCTAGCTCTACTTCACCCATTGGCTTAGTAATGATGTGTGCTCATACAATCAGTCCACTTGATCTATCATAAAAATATTGAAGCATTCGTTTTTTGCAGATTGGGGCTCTTTGGTTGATATTGTTGGCTATTGTTTCT</genome_strand>
        <mrna_strand>CCTTTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACAATGCCCTGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACTTCTGAATTTCCTCACCCGATGGCTCGTGTACCTCAACCTGCTGCGTATTGG..........................................................................................CTTTCCTACATACTCGTGGATTTACTTGTCTGGTGGGGCATAAGAGGCTACATCAACGATTTTAGGAAAAAGAAGTTAAACCTTCCTCCTATCGCCTACTTCAGTACATACCACGGATCAATTTCTCACTTCCCAACTGGCTACATGTGGAGTCCACATGTTGTGCCAAAGCCTAAAG.....................................................................................................................................................................................................................................................................................................................ATTGGGGCTCTTTGGTTGATATTGTTGGCTATTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323956" ref_strand="+" ref_description="SGN-U323956        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | UDP-glucose:sterol glucosyltransferase, putative, similar to UDP-glucose:sterol glucosyltransferase (Arabidopsis thaliana) GI:2462931; contains Pfam profile: PF03033 glycosyltransferase family 28 N-terminal domain | chr1:16427872-16432606 REVERSE | Aliases: None(evalue: 1e-40, score=162) genbank/nr: sterol(evalue: 2e-51, score=204)">
      <seq>tcggtgatcaattcttctggggcgatagaattcatgaaaagggactgggacctgctccaattcctattgacaagcttagtgtagaaggactctctgatgctataacatttatgcttcagcctgatgtgaaatcccgagtaatggaactagctgtattattagagaacgaagatggtgttgcaggtgcagttgatgctttccatcggcatttgccttcagaaatgccattgccaaccccaaccccggcttatgaggatatcgatggtccaaatccgttacaatggcttttcacaaggattggaagaatctgttgcctgccttgtggttcttggctctgaaactgcatttatagagttgcatagttgtgttatttcatatttttttttgattaattggttgtattggttcatcacatcattctttcttcttggcttgtaaaataagttacatggcaaaactttatagacatatttattgctattattttcatagtgattttgtaacaacaccaagctcttgttcattttagtgttcaatgatcgctttgcagagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="50514" stop="51789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50814" g_stop="50938" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51058" g_stop="51490" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="558" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U323956" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50814" e_stop="50938"/>
          <exon e_start="51058" e_stop="51490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTGATCAATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGATGTAAGTGTCTATGCATCTCCCTACCTAATGACATACCAATCTGTCACTGCAGAACACAAACGTGTTTTGGAAATGCTCGTTATAGACTTTGCTTGCTGATGGAAACTTAACTTATACAGGTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGACAGAG</genome_strand>
        <mrna_strand>TCGGTGATCAATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT.......................................................................................................................GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317620" ref_strand="+" ref_description="SGN-U317620        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | thioredoxin family protein, similar to thioredoxin CH2, M-type, chloroplast precursor GB:P23400 SP:P23400 (Chlamydomonas reinhardtii); contains Pfam profile: PF00085 Thioredoxin | chr1:28816584-28817945 REVERSE | Aliases: F28O16.13, F28O16_13(evalue: 5e-51, score=197) genbank/nr: gi|42563272|ref|NP_177802.2| thioredoxin family protein [Arabidopsis thaliana] >gi|38454080|gb|AAR20734.1| At1g76760 [Arabidopsis thaliana] >gi|38604000|gb|AAR24743.1| At1g76760 [Arabidopsis thaliana] (evalue: 3e-49, score=197)">
      <seq>cggcacgaggaactttctcgcgttttcttccttccaaaaatggcattttctatagctgctgccggagccgctaccggagccggagctttggcttctccatcggcgaatggctcttcttctaccaagttttcttacttggcttctttgcaatttcccagagagcttcgtcgtgttcaaattgggaactatgggttgaagtcaaagaaagggtcttcacgtcttgttcctctggttgaagcaaagaagcaaacattttcttcctttgaagatatgttggagaactctgagaaaccattattggtcgacttctatgcaacctggtgtggtccttgccagttcatggttcctattctaaacgaagttggtgaatcgatgaaagataaaattcaagtggtgaaaattgatacagagaagtacccagctctcgcagacaagtacaaaatacaggcgttgccaaccttcatattgttcaaggatggagacgtttgtgatcgctttgagggcgcactcaatgctcctcaattgatgcaacgcataaaatctgcactggaagtaaagcagtagtcttagcgtgctgcctttctagtgctcgaatcatcgttttgaagttattcatgtttaaatttcaatgatcgtgttctgtggaagccttcagtttctcgctccatgtatttgcaaagaaaattgattagatacaggtgtacaatgattaatcaatttgccctaactgctctaaaaaaaaaaaccattaaaatatgattaaactttaattttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="58349" stop="62255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58652" g_stop="58869" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="231" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60626" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="320" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60805" g_stop="60982" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="498" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61676" g_stop="61955" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="778" r_length="280" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="805"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U317620" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58652" e_stop="58869"/>
          <exon e_start="60538" e_stop="60626"/>
          <exon e_start="60805" e_stop="60982"/>
          <exon e_start="61676" e_stop="61955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTGGTATTTCATTTCTTTTAACTCAAATTCGAAAAGGGTGTTTTCTTTTTGGCTTCTAAAATTATTTTTGTTTAATGTTGTATGTAAAATTTTCTTTGATTTTATCGTGTGGAGAGATTTTCCTGCTGGAGTTTTGGCTTGTGGAGTTTGATTTCTTAGAATTTGGAGTATTAAGATGGATTGACTTTGTGCTTGTTGTGAATTACCCTTTCATTTGACAAAAAATTGCTTCAGTGACATCTGTATTGGGGGTTTTATATGCTACATTTCTGTTTTGAATGGCTATTAAATGTTAAATGTGTAATTTTAGGTGTAACTATCAGTTTATATACGGAGTCGAGGCCTTGAGGTACTAAACATATCTGTAGTTTGTCTTTTTGCTGTTCCATTTCTCTGGTTGAATTCTTTTTTTTTTTTTTGATTGGGGTGGGGGTGGAAGAGTCTTATGTTGGTGAAGAGCAGAAGAGGGTGAAATTGTAATAGTTTTAGTAAAGATGTGACCTGTTGTTTATTCTCCTCTTTGAGTTGTTATTTGCACTTAGTATCAAACTATTAGATTAGAAATCAAGATTCTGTTTTACTTGAATTTGTGTACAAGCCGTGAGGATCCCTGCAGCATTAGCAAATAAAGGCAGATATTGCAAGACATTCCTCCGTCTATTTTGGTATTCAGCTCAGGCTTTTGTTATTTTAGAGTAACAGATAGACTAAACCTGGCATAATCAAAAAATTCTCTCTTGTGAAGTTTTGTATATGCAGAAGCCTGAATGACATGATAACCAAGTCATCCTTCTCAATGAACCTTACACCCCCCCCCCCCCCTCTCTTCACGGGCATTGAAAATGTGCTGTCTGACGCATATCCTCGCAACTTGATATGCATAGACGATGGGTATAATCGTCACTTCTGCTTATTGGCTAGTCCTCAAAGTATAAGTTTTGTTAAGTATTAGGAAGAAACAACTCATTGATAAGCTAGTGCAAAGGGGAAAATATTAATTACACCATTTTCTAAAGGTGAACTTTGGTTAGATGAAATTTGAATTTTCAAAAGAAATGAGAGTAGAATCAGATTCACTGTATATTTGTAGAAGTTTTTCAGGTATTTTCTGATCCTCCAAAAAAATAGATGTTGTATAAATCAGGGAAGGGTGAAATGAACTATATATTTTTTTTGGATACAAATTAGTACACTTATTTTGTGTGGAAAGTGAGAGAAGTGAGCGACTGTTTTGTTTCATACAGGAGTTGAGAGAGTACTATCTGACCAAGTAAATAATAAATTACAGTAGATGTAAACTGTCAGAGAACAAAATATACTTTTTTTTTCATTTGCTATAATGTGATGCAAGGTCGTTGTTGTTCATTAGCAATATGCTCTTGGGGGACTTTAGACTTCTGCTTTTCTATTTATTCAGTGCCTTCTTGTTGAATGCTTCATTTTCTGTTACAACTAGATGTTATTTGTTTAGCAATGTAATCAGCTTGAGCTGCTGAATTGCATCATCTTGATTAAATCCACTTTTGATTTTATCCCTCACTGACATCATTATCTCAAATCTGCTGACATTTGCCCATTATGTACTCTTTGAAAATATCGCATTCTAAGTTTTTGCTTTTATAGAAATGATGGTCATTGCTTAGATTGATTAAATCGTATCTGTATAATTAGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTGGTACGCTGAACTCTCCTTGGCAGCCTTCAACCTTTATTTACATCAAAAGTAGAAGAATTGCTAAGTGGATATAGCTATCTGTCTCAATCTTAAGTTCTTTGAAGTCGCATGTGGGGTCAAAAGCTTCGCTACTGTTTCTATTCAGATAATAATGAGAGTATTCTCATATTACATGCAGGTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTTGTAAGTGGAATAGACCTTGTTATTACTTGTTTTCATGTTGTTTTTTCGATAGTGTTCATGCCAAAGCTACCAGAACATCTTTTTGAATGATTTTGGTAGTAACTAGTAGGACGCTTTTAAAGTTACCAAGTAGATAAATTTCCTCTCTCATTCAAACTTCTATTACTTGTGAGTTTTGAGCATATTATGCCTCTTTCCGTCTTGCATTTGTACACCCCTAAAGCCAGAAGAAGTAGAATAAAGAAATGACCAAATAGCTGATTGAAAACGGTCATGAAACAAAAAACTGCACGAGGTTGGGATCTTTGGAAGTGTATATAGCTTTTAAGATTTTATTTGAGTGAGAAAAATGCTAGTCAGTTCACTTTCTACTCTCGAGGTAAAGGTAAGGTCTTCCCCAATCCCACTTTGAGGGACTATACTGGATATATGAGTATAAGAAAACTGCAAGTCAAGCACAACAGTAACAAGACTTGAGTAGTCAAAAAGTGAATACATGAAAAAATCAAAGGGGGTCCAACATCAACTAATATACATAAAAAACTAATATAAACAGTGTAACTTTTCGTCCTAGCTCCGCCCCTGGACTTGAGGGTTTGGTGGATATTTTTTTTTGTTGCAAATTTTCTAGTTGATTTAGTATTTAGCTCAAGTGTATCTTGTGTAAGTAACTGTTTCAATGTCTTGTTTCAGGAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAA</genome_strand>
        <mrna_strand>TTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG..................................................................................................................................................................................GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAAAAAAAAAAACCATTAAAATATGATTAAACTTTAATTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340861" ref_strand="+" ref_description="SGN-U340861        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:16311322-16313370 REVERSE | Aliases: None(evalue: 8e-28, score=120) genbank/nr: gi|42570091|ref|NP_683372.2| expressed protein [Arabidopsis thaliana] (evalue: 6e-26, score=120)">
      <seq>ggatatgtccagcagctacggagactggtgctgctggcattggacatgaatcaattagtagtaatactgaacttcagaaatccatgtcagttattggtggaagtgaagcatgtggtccgaagataatccttagaagtataaagggcatccaaagaagtgaagaagtgttgatttcatacactgacttgttacagcctaaggtgatgaggcaatcagagttgtggtcgaagtacaggttcagttgctgctgtaaacgatgtagatcaatgcctatgacttatatggatcattgtctgcaggaaatcttaattttaaatctcgatagttcaaatatggctactggtgacaacttctatgaggaacatgtaatggagaagctgattgattgcttggatgacgctatagatgacttcctgtcatttaataaccccaagaattgttgtgaaaaactcgagatcctgcttactcaagatcatgttaacgttcttctaaagcctgacggagaaaaatacatcaactcttcagattacatcctcttcaccatgtctctttgcatgccatcctgacacttgcttctgcatacaaagtctctgtaagtgaactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="62666" stop="65829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62966" g_stop="63061" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63062" i_stop="63167" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63168" g_stop="63271" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="200" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63272" i_stop="64044" i_length="773">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64045" g_stop="64143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="299" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64144" i_stop="65220" i_length="1077">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65221" g_stop="65529" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="607" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U340861" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62966" e_stop="63061"/>
          <exon e_start="63168" e_stop="63271"/>
          <exon e_start="64045" e_stop="64143"/>
          <exon e_start="65221" e_stop="65529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATGTCCAGCAGCTACGGAGACTGGTGCTGCTGGCATTGGACATGAATCAATTAGTAGTAATACTGAACTTCAGAAATCCATGTCAGTTATTGGTAATGAACTACTGTAATTTCTTTCCAAAGTTATGATTTTTTTGATAATCTTGATGGAGAGCAAATGTGATTTTCTTTCTGCTTTCCATTCGTTGTTTGGCGATAGGTGGAAGTGAAGCATGTGGTCCGAAGATAATCCTTAGAAGTATAAAGGGCATCCAAAGAAGTGAAGAAGTGTTGATTTCATACACTGACTTGTTACAGCCTAAGGTACAGTTGTTCTCAATCTTTTGAAGGACATGACACAATTTTATATTATCAAGGACATCACTATAGATAGGAAAGAGTGGATGTCGTGTATTAGGGTAGAAGGCTAGTAGAAGAGAGTGTCGCCTTTCCTTGCATAGGTTTAGTGCCTGTCATAGGACTAGTTGTACCCTTGTAGTTCTTGTGGTATGATGTTTATTGTATTTTGATGATCACATTATTTTAGTTGTTGTTACTGTTTCTCTCTTGTATACTCAACACTGCTTTTTTTTATTAACCACTATGCTTTGTCCATTGTTTTCATCTTCTTTTACTTGGTTTTTGATGCACTTGAGCTGAGGGTCTTCCGTAAACAGGCTCTCTACCTCCACGAGGTAGCGGTAAGGTTTGAGTGCGCTCTACCCTCCCCTGACCCCGCTTTGTGGAATTTCATTGGGTATGTTGTTGTTGTTGTGTTTCTTATCAAATGTTTCTTGATGGAGAACCTTCTGAACTCAGGTATGAACTATGAATCAATTGCCAGTTAGATACATTTTGTATGACTGAACAAATGCTGGTTCCAATGCCGAATAATTTCACTGTAACATTATCAATTCGATTTATTTGAGTTGTTGCTTAGATTGTTTACCAGAATTGTTCTTCTTTTTCAAATCCAGTATATAGGGATGATGACAGCTAAGTTCTACAAGTTATTTTTAATGATGTTCTATGTTAACCATATCAACTTTCAAAAGAAAAAAGAAACAGTTTTAATAGTGACTTTACTTGTCTTCCAGGTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACGATGTAGATCAATGCCTATGACTTATATGGATCATTGTCTGCAGGTAAAATCATATGGTTTGAGAACAATGGTTAGAAGGGTATGCATGTACTGTCGAACCGTAATTGTAATACCATCATTTTTGTCCAACAGTAAGCTCCTTCTTTAAATGATTCCAGTTTCACCTCTTTGATTTTCCGTACCTTATAAATTTTATGTTTGGTAATTGCAGCATATCCTGTTAATTCGAGTTGTAGAGGGTAATCTGGAAATTGGAGCATTTTTCTTTTATTATGATCTATTTTTTGTGTAATTGACCACTAAATAGTTGTAATTTGGAGGGTTCCTTTATTCATTACTTTGATTTTGCTTCCATTGTTTTGTTTTTTTGGGATGAGTACTTTGCTGCCATTGTTGTTTCAGCATATTTGTCTTTTATTTTCCTCAAATTTGGTCTGACATCAAATTGTGTGGCAATCAGAATGCACTTAGTAAAAGAATTAGGCCACAGTTGATACACGTATGGAGGTTTGATGATCATGGAGATGAGATGTGACAATAAATGTTTGTTTCAAAGAAACTAAGGTGTTCAAACTTGGTAAGTGCTCACCAAGGCAAAAATAAAAAAGGAAAAGGACTAAGAGGTGATTTCTGGTGCAACCCCATCACAACTAGAAGTGCTCCGAATCTCCTCCCACTGTCCTTACTCGGGTCTTGGCTCTATTGTACATGTCCTTAATCCGATTCCGACCTAGTGTATGCCACAGGAACAGCTCTAGCCTCCAAGCATCTTCATAGAACCTCCCTCGGAACTTTGTCATATGTCTTTTCTATGTCAATGAAACAGCATGTTTATCATCAAAAGCAATAAGAAATTAAAAATAGCCCAAAAACATCCAGGCTGGTGTTTAACAATCTGCTAAGAAGTCTAGTTTATATATTTTCTCTTGTAATTTTCCATATTGTTTGTTTTCTTCCTTTAAATCTCTGGGAGTTTTTTTCCTTTTAAGCCAAGTTCTGCTTTGAAGTTCGTAGTCAAGCAGAGTTGAAGATCATTGCTCTTCTTGTTTTTTCTCCTAAGAATTATGACATATCTAAGCCTTTAGGATCATTAACATCTTTTGTGAATTTTCTTGTGCAGGAAATCTTAATTTTAAATCTCGATAGTTCAAATATGGCTACTGGTGACAACTTCTATGAGGAACATGTAATGGAGAAGCTGATTGATTGCTTGGATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCAAGAATTGTTGTGAAAAACTCGAGATCCTGCTTACTCAAGATCATGTTAACGTTCTTCTAAAGCCTGACGGAGAAAAATTACATCAACTCTTCAGATTACATCCTCTTCACCATGTCTCTTTGCATGCCATCCTGACACTTGCTTCTGCATACAAAGTCTCTGTAAGTGAACTGCTG</genome_strand>
        <mrna_strand>GGATATGTCCAGCAGCTACGGAGACTGGTGCTGCTGGCATTGGACATGAATCAATTAGTAGTAATACTGAACTTCAGAAATCCATGTCAGTTATTG..........................................................................................................GTGGAAGTGAAGCATGTGGTCCGAAGATAATCCTTAGAAGTATAAAGGGCATCCAAAGAAGTGAAGAAGTGTTGATTTCATACACTGACTTGTTACAGCCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACGATGTAGATCAATGCCTATGACTTATATGGATCATTGTCTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTTAATTTTAAATCTCGATAGTTCAAATATGGCTACTGGTGACAACTTCTATGAGGAACATGTAATGGAGAAGCTGATTGATTGCTTGGATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCAAGAATTGTTGTGAAAAACTCGAGATCCTGCTTACTCAAGATCATGTTAACGTTCTTCTAAAGCCTGACGGAGAAAAA-TACATCAACTCTTCAGATTACATCCTCTTCACCATGTCTCTTTGCATGCCATCCTGACACTTGCTTCTGCATACAAAGTCTCTGTAAGTGAACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314400" ref_strand="+" ref_description="SGN-U314400        Tomato 200607 #1 [10 ESTs aligned] genbank/nr: ASR3(evalue: 1e-34, score=148)">
      <seq>gtttaatcaacaattaatttagtgaagaaaatattataatattaatatggctgaagagaaacaacatcaccgtttgttccaccacaagaacagagaggaagaaggtggtccagttgatcataaaaaaaaagtgaagcaccatagccatctccagaaaattggtgaacttggtgctgttgctgccggtgcttacgccttgcatgagaagcacaaggcaaagaaagacccagagaatgcacacaaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagccaagaaagagaaaaaggcagctgagaaaggacgacaccactaattaaatttaagtcacccatctatggactgcataaaataaataaaagttactatatatgtatatatattatgtgttttatgttcagtttaaatttaatttatgtccagtgtgtattagaatggtgtttctcaccttgtaacactttttctataattctattcattaatttgttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="69904" stop="71531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70204" g_stop="70402" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70879" g_stop="71230" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="551" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="563"/>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U314400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70204" e_stop="70402"/>
          <exon e_start="70879" e_stop="71230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTGGTACGTAAACATTACTTCCTCCATCTCATTTTATTTGACTAGGCACGAAGTTTAACAATGAATAATCGAAATTTAAATCATTTCATCAATCGTGTATCATTCTTTTTTAGACTGACTAAAAAGTAAAGTAAGTCACATAAATTGGAATTGGAATAGGAAGAATATTTAATAACATATGTTATGTCCATTGATATAAAATATTTCATATACATGTCCTAAATTTTTGTGTCTAGTTATTTCAAATAGGATATGTATGGTACTATTATACTCTATGTTCTATGTGGAATATATATAGTTGGACTAGTGATTTCGCTCCAAGTTTAAAGTGATCATATAGCTTTTCTAATGTCATAATACTCCCTTCGTCTTATATAATCGTTACTTTTTATTTCCAAGCTTATGTCGAAAAGTAGTAAAAAAACGATAGATAATTTGAAGCGAACATGTATGTACTAAAAATGCATGTAAATATACAGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</genome_strand>
        <mrna_strand>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="74594" stop="75371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74894" g_stop="75070" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74894" e_stop="75070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76075" stop="77388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="77088" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="77088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAACCCAACAAAACTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCATTGCCCATATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCC-AAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76596" stop="77854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76896" g_stop="77554" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76896" e_stop="77554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTCCAAGATCAATACAGAAGTCAATATCCCTATCTGGCTGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGTACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="78693" stop="76648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78393" g_stop="78207" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78206" i_stop="77462" i_length="745">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77461" g_stop="76948" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78393" e_stop="78207"/>
          <exon e_start="77461" e_stop="76948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAATTTTCATGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCTTGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATACTTGAACCCAGAGAGTGTTATGGATGTGGGGAGACTGGATACATTAAGAGGTATTGTCTAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGGGGTGGTTATGAAAGAGGTCGTCATTCTGGAGGACACGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGTTTTTGTATTGTTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTTCTAATGGTCTTTGATTTACATTGTGAATTGCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTATGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGGTGATTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGATGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTACGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTATCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCAGCCAGATAGGGATATTGACTTCTGTATTGATCTTGGACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="76665" stop="78023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76965" g_stop="77723" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76965" e_stop="77723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTCCAAGATCAATACAGAAGTCAATATCCCTATCTGGCTGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGTACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAAGACCATTAGAAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAACCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAT-TTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="77068" stop="77995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77368" g_stop="77699" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77368" e_stop="77699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAAGACCATTAGAAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAACCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAAT-TTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="79315" stop="78162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79015" g_stop="78462" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79015" e_stop="78462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCTACCGACTGAGGAAGTAATAAGAGAAGGGAAGGATGGGGAGAATGAACAAGTGCAAAATGAGAAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGAGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTCCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCCTGAACTTGTCAGCAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGTGGTCACATGTTGAGTGTCAAACAACAGAGGCACCACCTATGACTTGAGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338641" ref_strand="+" ref_description="SGN-U338641        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|400471|emb|CAA52874.1| Asr3 [Lycopersicon esculentum] >gi|584788|sp|P37220|ASR3_LYCES Abscisic stress ripening protein 3 (evalue: 6e-05, score=51.2)">
      <seq>tcatcgatatactatatttcatttatgtcataagttttctttaatttcttaaatcatgcgtccaattatttaaaataggatatgtacggggtactattgtatgtggagataaatagttggactaatgacgcatgagttcgccccaaatctaaagtgatcctatgactttctttacgtcatacttcattcgtttcaaaataagtgttttattttttttagatctaatttgatcactattttttaaaaaattaattggaatagatcaacacaaaattagttttaaaatttaaatttagatattcaacaactattacaaaatttactacaagttacgattattctcatgtgtcgatataatgaaaaaggcattattaaatgaaaatcgactttcacatatcatatcgagaagtactaatagaaatgacagataatttgaagcgaatgatttgagaaataccttagatgacattgcaccatatacttatggttgataaatgaaaataataagtgtattttttctcttacatatctcttcaatatcttagtgttttgttgttacataaatatatatagcatgagaagcataaggcaaagaaggatccagagaatgcacacnaacacaagataaaacaagagatagcagcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaaaaaagatgccaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="88433" stop="89742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88733" g_stop="89442" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U338641" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88733" e_stop="89442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCGATATACTATATTTCATTTATGTCATAAGTTTTCTTTAATTTCTTAAATCATGCGTCCAATTATTTAAAATAGGATATGTACGGGGTACTATTGTATGTGGAGATAAATAGTTGGACTAATGACGCATGAGTTCGCCCCAAATCTAAAGTGATCCTATGACTTTCTTTACGTCATACTTCATTCGTTTCAAAATAAGTGTTTTATTTTTTTTAGATCTAATTTGATCACTATTTTTTAAAAAATTAATTGGAATAGATCAACACAAAATTAGTTTTAAAATTTAAATTTAGATATTCAACAACTATTACAAAATTTACTACAAGTTACGATTATTCTCATGTGTCGATATAATGAAAAAGGCATTATTAAATGAAAATCGACTTTCACATATCATATCGAGAAGTACTAATAGAAATGACAGATAATTTGAAGCGAATGATTTGAGAAATACCTTAGATGACATTGCACCATATACTTATGGTTGATAAATGAAAATAATAAGTGTATTTTTTCTCTTACATATCTCTTCAATATCTTAGTGTTTTGTTGTTACATAAATATATATAGCATGAGAAGCATAAGGCAAAGAAGGATCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAA</genome_strand>
        <mrna_strand>TCATCGATATACTATATTTCATTTATGTCATAAGTTTTCTTTAATTTCTTAAATCATGCGTCCAATTATTTAAAATAGGATATGTACGGGGTACTATTGTATGTGGAGATAAATAGTTGGACTAATGACGCATGAGTTCGCCCCAAATCTAAAGTGATCCTATGACTTTCTTTACGTCATACTTCATTCGTTTCAAAATAAGTGTTTTATTTTTTTTAGATCTAATTTGATCACTATTTTTTAAAAAATTAATTGGAATAGATCAACACAAAATTAGTTTTAAAATTTAAATTTAGATATTCAACAACTATTACAAAATTTACTACAAGTTACGATTATTCTCATGTGTCGATATAATGAAAAAGGCATTATTAAATGAAAATCGACTTTCACATATCATATCGAGAAGTACTAATAGAAATGACAGATAATTTGAAGCGAATGATTTGAGAAATACCTTAGATGACATTGCACCATATACTTATGGTTGATAAATGAAAATAATAAGTGTATTTTTTCTCTTACATATCTCTTCAATATCTTAGTGTTTTGTTGTTACATAAATATATATAGCATGAGAAGCATAAGGCAAAGAAGGATCCAGAGAATGCACACNAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314414" ref_strand="+" ref_description="SGN-U314414        Tomato 200607 #1 [13 ESTs aligned] genbank/nr: ASR1(evalue: 3e-11, score=73.2)">
      <seq>aatcggccgaattggtatcaaacaccatacactttctaaattatcgatagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactacgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttggtacgttgatataatcttaccttatatatataaacgttattatcgattatttatacaaatcattttcttttattcaaattacgatcaaaatcatttaagagtttttctaccgggaacatccgattagtcaagattttcatcggagagtttgaatatattgattcctaataaaatgattttatttcctcgattcatgccaaaaatctataattaaggacggaagagtagccaattatttatttaatataatttaattccttttttccttttaaatttttagtttaatttcataatatatgtaaggaaggggtgtgaaaaatttaaagaagataaacagagaagggatggttttatttgcgagtaaaagagtttattttctatctaaacacgtttacactaatttcacattaagttcacctaattatagtaactctctatcatctatacaaaaatagcgtaataataaaaattgttctacaacttctaactcttcaattaaaaaaaaaacaacatatagaatatcgatgttgaaattactcagtacttcattcgtttcaaaataagtgttgttgtttgtacgacatgatcacaactgatgaaaatatgtcacacgaattagaacagagtctctgttattaattactttttccctcttttgttggtgataataaacataaaacaaaattagcatgagaaacatgaggcaaagaaagatccagaacatgcacaaacacaagatagaggaagagatagcagcagctgctgcagttggggcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatattcgtggaatttccatatttggtataagtgttgtgtcatcttatcatatatcgtgcataataacaataaatttagtgtgatattataaatggatcgagttaaaaaaaaagagcaaaagtcaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgatttccaaaatgatcatgtgtgttttggactttcctcgcaatcttctgttgaattaccttgtaaaatgttgcttttttaagtggtgtaataaataatgagttttctagtgaaaaaaaaaaaaaaaaaaaaaaaaaacccccgggggggggccgggaccccattccccccaaaagggggccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96487" stop="98468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96777" g_stop="98167" g_length="1391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1389" r_length="1389" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U314414" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1391</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96777" e_stop="98167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATG--CACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314411" ref_strand="+" ref_description="SGN-U314411        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: ASR1(evalue: 3e-22, score=107)">
      <seq>ctttctaaattatcgacagattgattgtttcagatggaggaggagaaacaccaccaccaccaccacctgttccaccacaaggacaaggcggaggagggccccgtcgactatgaaaaagaaatcaaacaccataaacatctcgagcaaatcggtaaacttggcactgttgctgccggtgcctacgccttgcatgagaaacatgaggcaaagaaagatccagaacatgcacacaaacacaagatagaggaagagatagcagcagctgctgcagttggagcaggtggatttgcattccatgagcatcatgagaaaaaagatgccaagaaagaagaaaaaaaagctgaggggggacaccaccatctcttctaaattgttattttagttacatttttaatatttgtggaatttccatatttggtataaagtgttgtcgtgtcatcttatcatatatcgngtataataacaataaatttagtgtaatattataacggatcgaattaaaaaaggagccgaagtaaaaatatattttaccaatctcgtgtgatgtaaagaaggatgtattgtgattttcaaaaagatcatgtgtgtttttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="96508" stop="98388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96808" g_stop="96993" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97682" g_stop="98088" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="597" r_length="408" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U314411" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96808" e_stop="96993"/>
          <exon e_start="97682" e_stop="98088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAG-AA-A-CACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTAT-AAGTG-T-T-GTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTT</genome_strand>
        <mrna_strand>CTTTCTAAATTATCGACAGATTGATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTATGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGAGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTTGTGGAATTTCCATATTTGGTATAAAGTGTTGTCGTGTCATCTTATCATATATCGNGTATAATAACAATAAATTTAGTGTAATATTAT-AACGGATCGAATT--AAAAAAGGAGCCGAAGTAAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTTCAAAAAGATCATGTGTGTTTTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314397" ref_strand="+" ref_description="SGN-U314397        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: | Symbol: None | endonuclease/exonuclease/phosphatase family protein, belongs to Pfam:PF03372: Endonuclease/Exonuclease/phosphatase family; contains 3 WD-40 repeats (PF00400);similar to Type II inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56 (5PTASE) (INPP5B) (SP:P32019) (Homo sapiens) | chr2:18185756-18190899 REVERSE | Aliases: F6E13.3(evalue: 1e-05, score=47.8) genbank/nr: ASR4(evalue: 1e-104, score=382)">
      <seq>ggcgattggcggccaatcggccgaattgatcccaaagtattttgttctactactacatttttttcatacacaattgtcaccaaaaaacatcatggctgaagaaaagaaacatcactttggtggtctctttaaccaccacaagaacaaagaggaagacacccccattgagaaaactacatatgaagaaacaacctatgaagacagtgaaaaaactagcacttatggagacaacacatatggtgaaaaaactagttatggtgatgatacatatggcaaaaaaactaccacatatggagatgacaacaaatatagtgagaaaactagttatggtgatgatacatatgacgaaaaaactaacacatatggagatgaaaacaaatatggtgagaaaactagttacagtgagggagatgacaacaaatatggtgagaaaactagttatggtggtgatacatatggcgaaaaacctacctcctacggaggagataatacatatggtgagaaaacaagttatggtgggggagatgaaaacaagtatggtgagaaaactagttatggagagaaagctagttatggtggaggagatgacaacaaatatggtgagaaaacaagttatggtaatgaggaaggtggctatggtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttgcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="103424" stop="105091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103724" g_stop="104497" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="802" r_length="774" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104609" g_stop="104791" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="985" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U314397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>957</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103724" e_stop="104497"/>
          <exon e_start="104609" e_stop="104791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</genome_strand>
        <mrna_strand>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG...............................................................................................................CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338654" ref_strand="-" ref_description="SGN-U338654        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycine-rich protein | chr3:2411327-2413420 REVERSE | Aliases: F21O3.27(evalue: 6e-05, score=45.4) genbank/nr: ASR4(evalue: 2e-80, score=293)">
      <seq>gttttctcaccatatttgttgtcatctcctccaccataactagctttctctccataactagttttctcaccatacttgttttcatctcccccaccataacttgttttctcaccatatgtattatctcctccgtaggaggtaggtttttcgccatatgtatcatcaccataactagttttctcaccatatttgtagtcatgtccctcaccataacttgttttctcaccatatttattgtcctctccatatgtggtagttttttcgccatatgtatcatcaccataactagttttttcaccatatgtgttgtctccataagtgctagttttttcactgtcttcataggttgtttcttcatatgtagttttctcaatgggggtgtcttcctctttgttcttgtggtggttaaagagaccaccaaagtgatgtttcttttcttcggccatgatgttttttggtgacaattgtgtatgaaaaaaatgtagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="-" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="104604" stop="103444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104304" g_stop="104096" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104095" i_stop="104025" i_length="71">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104024" g_stop="103744" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="489" r_length="281" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="-" ref_id="SGN-U338654" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338654" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104304" e_stop="104096"/>
          <exon e_start="104024" e_stop="103744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCACCATATTTGTTGTCATCTCCTCCACCATAACTAGCTTTCTCTCCATAACTAGTTTTCTCACCATACTTGTTTTCATCTCCCCCACCATAACTTGTTTTCTCACCATATGTATTATCTCCTCCGTAGGAGGTAGGTTTTTCGCCATATGTATCACCACCATAACTAGTTTTCTCACCATATTTGTTGTCATCTCCCTCACTGTAACTAGTTTTCTCACCATATTTGTTTTCATCTCCATATGTGTTAGTTTTTTCGTCATATGTATCATCACCATAACTAGTTTTCTCACTATATTTGTTGTCATCTCCATATGTGGTAGTTTTTTTGCCATATGTATCATCACCATAACTAGTTTTTTCACCATATGTGTTGTCTCCATAAGTGCTAGTTTTTTCACTGTCTTCATAGGTTGTTTCTTCATATGTAGTTTTCTCAATGGGGGTGTCTTCCTCTTTGTTCTTGTGGTGGTTAAAGAGACCACCAAAGTGATGTTTCTTTTCTTCAGCCATGATGTTTTTTGGTGACAATTGTGTATGAAAAAAATGTAGTAGT</genome_strand>
        <mrna_strand>GTTTTCTCACCATATTTGTTGTCATCTCCTCCACCATAACTAGCTTTCTCTCCATAACTAGTTTTCTCACCATACTTGTTTTCATCTCCCCCACCATAACTTGTTTTCTCACCATATGTATTATCTCCTCCGTAGGAGGTAGGTTTTTCGCCATATGTATCATCACCATAACTAGTTTTCTCACCATATTTGTAGTCATGTCCCTCAC-.......................................................................CATAACTTGTTTTCTCACCATATTTATTGTCCTCTCCATATGTGGTAGTTTTTTCGCCATATGTATCATCACCATAACTAGTTTTTTCACCATATGTGTTGTCTCCATAAGTGCTAGTTTTTTCACTGTCTTCATAGGTTGTTTCTTCATATGTAGTTTTCTCAATGGGGGTGTCTTCCTCTTTGTTCTTGTGGTGGTTAAAGAGACCACCAAAGTGATGTTTCTTTTCTTCGGCCATGATGTTTTTTGGTGACAATTGTGTATGAAAAAAATGTAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314399" ref_strand="+" ref_description="SGN-U314399        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: ASR4(evalue: 1e-08, score=62)">
      <seq>gtggaggagttggtgcctactcatctgagactactactaattatgaagagaatgatgatagtggaaccaaaacttctgaggattacaaggaagagaagaaacatcacaagcatcttgaagaacttgggggacttggagctgttgctgctggtgcctttgctttggtaaatattctttaattctaactttccacgtgacaatgcatatgtatgagattacaagattaaatgacattttcctacgttaatcttcgatatggtatatgaaaatttcagcatgagaagcacaaggcagagaaagatccagagcatgcacacaagcacaagatagaggaagagatagccgcagtagctgcagttggtgctggtggatttgcattccatgaacatcatcagaagaaagaagcaaaagaagaagaggaggaagctgagggaaagaagaagcatcatttcttctaatgaattctcttgtcataacatatagtatttgnntgtgtgctgatcaatctatcctttaattaatacgtactcagcatgcacctaaataatttgtatggtgtgttacactactcttctctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0094K06-zPrau/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0094K06.1" temp_strand="+" temp_description="C04HBa0094K06.1  CU468249.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0094K06 sequenced_by:sanger upload_account_name:uk">
        <position start="104034" stop="105211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104334" g_stop="104911" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0094K06.1" gen_strand="+" ref_id="SGN-U314399" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0094K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104334" e_stop="104911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTG-TTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTAT-GTGTGTTACACTACTCTTGTCTTTG</genome_strand>
        <mrna_strand>GTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGNNTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGGTGTGTTACACTACTCTTCTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13377" PGL_stop="6583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13377" e_stop="12687"/>
            <exon e_start="12581" e_stop="12510"/>
            <exon e_start="9917" e_stop="9888"/>
            <exon e_start="6753" e_stop="6583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="13377" e_stop="12687" e_length="691"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12686" i_stop="12582" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12581" e_stop="12510" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="12509" i_stop="9918" i_length="2592"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9917" e_stop="9888" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9887" i_stop="6754" i_length="3134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6753" e_stop="6583" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13377" stop="12687"/>
              <exon start="12581" stop="12510"/>
              <exon start="9917" stop="9888"/>
              <exon start="6753" stop="6583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATCGTCGGCGGCTTCGTCGTCTTCATCCTCTACGATGCCGAATGATTTGCTGAATCAGCAGTATTCTAATAACGGGAGTAATAATAGTAGTAATTTGGAGGCGACTTCCATGACGGTTGATGGATTTTTACGGAATGTGTATGGGGAAGGTCAGGGGACGGAGGCTAATACTTTGTTGAATGCGAATATTACGTTACTTGATGCTGCTGGAGCGATAACGCCGATCAGTGATTCCGAGACAGCGACGGTTAGTGGGATACCTTTGGTTAGGAGGACGGTGGATGATGTGTGGAGGGAAATTGTGGAGGGGAAGAGGGAGCAGAGAAGGGCCGCAGTTGCGGGATGTAAGGAGGAGGCAGTGGATGAAATCATGACGTTGGAGGATTTTTTGGTGAAAGCTGGAGCAGTTGAGGAGGAGGCACTGGCTGGGGAGGGGCCAGTGCAAGGTGAGGTGAAGGTTGAACTAGGAACTGAGAGGTTGAGTGGTGGAATTTTTGCATTCGATTCCCCATACATGGCCATGCCGCAGCAGAGCGTGCAAGGATATGGAAATGGAATAGATGTGATTGGAGGTGGAAGAGGGAAGAGGAAAGCCATTTTGGAACCTTTAGATAAGGCGGCTCTGCAGAGGCAACGTAGGATGATTAAAAACAGAGAATCAGCTGCCCGGTCTAGAGAACGGAAACAG : GCTTATCAAGTGGAACTTGAGTCAATAGCAGTTAGATTAGAGGAGGAGAATGAACAGCTGTTGAAAGAGAAG : GAAGAGCGAACCAGAGCACATTATAAACAG : ATAATAGAGAAGGTAATTCCAGTTGTGGAGAAGCGAAAACCGCCTCGTGTCCTGCGAAGAGTGTGCTCCATGCAGTGGTAATATATCGTTTTGCCACAGGCATAGTTTAAAATTAATGCCTTCTGATATAGATACAGAATAAAGGAGCCTAGCCATGCTGGGGTTAAGTGA</gDNA_template>
            <first_frame> E  I  V  G  G  F  V  V  F  I  L  Y  D  A  E  *  F  A  E  S  A  V  F  *  *  R  E  *  *  *  *  *  F  G  G  D  F  H  D  G  *  W  I  F  T  E  C  V  W  G  R  S  G  D  G  G  *  Y  F  V  E  C  E  Y  Y  V  T  *  C  C  W  S  D  N  A  D  Q  *  F  R  D  S  D  G  *  W  D  T  F  G  *  E  D  G  G  *  C  V  E  G  N  C  G  G  E  E  G  A  E  K  G  R  S  C  G  M  *  G  G  G  S  G  *  N  H  D  V  G  G  F  F  G  E  S  W  S  S  *  G  G  G  T  G  W  G  G  A  S  A  R  *  G  E  G  *  T  R  N  *  E  V  E  W  W  N  F  C  I  R  F  P  I  H  G  H  A  A  A  E  R  A  R  I  W  K  W  N  R  C  D  W  R  W  K  R  E  E  E  S  H  F  G  T  F  R  *  G  G  S  A  E  A  T  *  D  D  *  K  Q  R  I  S  C  P  V  *  R  T  E  T   : G  L  S  S  G  T  *  V  N  S  S  *  I  R  G  G  E  *  T  A  V  E  R  E   : G  R  A  N  Q  S  T  L  *  T   : D  N  R  E  G  N  S  S  C  G  E  A  K  T  A  S  C  P  A  K  S  V  L  H  A  V  V  I  Y  R  F  A  T  G  I  V  *  N  *  C  L  L  I  *  I  Q  N  K  G  A  *  P  C  W  G  *  V  </first_frame>
            <second_frame>  K  S  S  A  A  S  S  S  S  S  S  T  M  P  N  D  L  L  N  Q  Q  Y  S  N  N  G  S  N  N  S  S  N  L  E  A  T  S  M  T  V  D  G  F  L  R  N  V  Y  G  E  G  Q  G  T  E  A  N  T  L  L  N  A  N  I  T  L  L  D  A  A  G  A  I  T  P  I  S  D  S  E  T  A  T  V  S  G  I  P  L  V  R  R  T  V  D  D  V  W  R  E  I  V  E  G  K  R  E  Q  R  R  A  A  V  A  G  C  K  E  E  A  V  D  E  I  M  T  L  E  D  F  L  V  K  A  G  A  V  E  E  E  A  L  A  G  E  G  P  V  Q  G  E  V  K  V  E  L  G  T  E  R  L  S  G  G  I  F  A  F  D  S  P  Y  M  A  M  P  Q  Q  S  V  Q  G  Y  G  N  G  I  D  V  I  G  G  G  R  G  K  R  K  A  I  L  E  P  L  D  K  A  A  L  Q  R  Q  R  R  M  I  K  N  R  E  S  A  A  R  S  R  E  R  K  Q  :  A  Y  Q  V  E  L  E  S  I  A  V  R  L  E  E  E  N  E  Q  L  L  K  E  K  :  E  E  R  T  R  A  H  Y  K  Q  :  I  I  E  K  V  I  P  V  V  E  K  R  K  P  P  R  V  L  R  R  V  C  S  M  Q  W  *  Y  I  V  L  P  Q  A  *  F  K  I  N  A  F  *  Y  R  Y  R  I  K  E  P  S  H  A  G  V  K  * </second_frame>
            <third_frame>   N  R  R  R  L  R  R  L  H  P  L  R  C  R  M  I  C  *  I  S  S  I  L  I  T  G  V  I  I  V  V  I  W  R  R  L  P  *  R  L  M  D  F  Y  G  M  C  M  G  K  V  R  G  R  R  L  I  L  C  *  M  R  I  L  R  Y  L  M  L  L  E  R  *  R  R  S  V  I  P  R  Q  R  R  L  V  G  Y  L  W  L  G  G  R  W  M  M  C  G  G  K  L  W  R  G  R  G  S  R  E  G  P  Q  L  R  D  V  R  R  R  Q  W  M  K  S  *  R  W  R  I  F  W  *  K  L  E  Q  L  R  R  R  H  W  L  G  R  G  Q  C  K  V  R  *  R  L  N  *  E  L  R  G  *  V  V  E  F  L  H  S  I  P  H  T  W  P  C  R  S  R  A  C  K  D  M  E  M  E  *  M  *  L  E  V  E  E  G  R  G  K  P  F  W  N  L  *  I  R  R  L  C  R  G  N  V  G  *  L  K  T  E  N  Q  L  P  G  L  E  N  G  N  R :   L  I  K  W  N  L  S  Q  *  Q  L  D  *  R  R  R  M  N  S  C  *  K  R  R :   K  S  E  P  E  H  I  I  N  R :   *  *  R  R  *  F  Q  L  W  R  S  E  N  R  L  V  S  C  E  E  C  A  P  C  S  G  N  I  S  F  C  H  R  H  S  L  K  L  M  P  S  D  I  D  T  E  *  R  S  L  A  M  L  G  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13376" stop="12687"/>
                    <exon start="12581" stop="12510"/>
                    <exon start="9917" stop="9888"/>
                    <exon start="6753" stop="6673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSAASSSSSSTMPNDLLNQQYSNNGSNNSSNLEATSMTVDGFLRNVYGEGQGTEANTLLNANITLLDAAGAITPISDSETATVSGIPLVRRTVDDVWREIVEGKREQRRAAVAGCKEEAVDEIMTLEDFLVKAGAVEEEALAGEGPVQGEVKVELGTERLSGGIFAFDSPYMAMPQQSVQGYGNGIDVIGGGRGKRKAILEPLDKAALQRQRRMIKNRESAARSRERKQAYQVELESIAVRLEEENEQLLKEKEERTRAHYKQIIEKVIPVVEKRKPPRVLRRVCSMQW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19964" PGL_stop="18522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19964" e_stop="19560"/>
            <exon e_start="19408" e_stop="19340"/>
            <exon e_start="19108" e_stop="19026"/>
            <exon e_start="18906" e_stop="18848"/>
            <exon e_start="18736" e_stop="18690"/>
            <exon e_start="18597" e_stop="18522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19964" e_stop="19560" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.984">
            <gDNA_intron_boundary i_start="19559" i_stop="19409" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19408" e_stop="19340" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19339" i_stop="19109" i_length="231"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19108" e_stop="19026" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.969">
            <gDNA_intron_boundary i_start="19025" i_stop="18907" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18906" e_stop="18848" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.760">
            <gDNA_intron_boundary i_start="18847" i_stop="18737" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18736" e_stop="18690" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18689" i_stop="18598" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18597" e_stop="18522" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19026"/>
              <exon start="18906" stop="18848"/>
              <exon start="18736" stop="18690"/>
              <exon start="18597" stop="18522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19560"/>
              <exon start="19408" stop="19340"/>
              <exon start="19108" stop="19026"/>
              <exon start="18906" stop="18848"/>
              <exon start="18736" stop="18690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCCTAACTCCTCCTTCTCTCTTTTCCTTATGCTCTGTTTCTTAGTGAACACATCTTTTTTTCTTATAATTTAAGAAACAACAACAACATGGAATTGGATGAATTACGTCTAATCTTAAAGAATTCAAGTGTGGACTTGTGGGGTTTAATTGACACAGCAATTTCTGTAGCCATTCTTGATCATGGAAACGAGCTTCGCAGTCGAAGAGACGCCATTGTTGAGAAACTCTATGTTCCTCTGCTTTCTAACAATTCTAATTCTGATGGAAATTATGAAATCATGAAAAGAATTGAGAGAAATATCGATGATGACAAGTTAAAAACAGAGGAAAATAGTAATGAAGAAGATTTAGAGATCAGCAAAATCCTCAGAATCAAGAACCATTTTGAAATCCCAAATCAG : TCTGAGAAATGCTTGGTTGATCAGCTTCAAAGTCTTGCTGAAATGGACATTAATTTCAAGGTTCTTGAG : AAAACAAATATTGGAAGGCATGTAAACAAGCTGCGAAAGCATTCATCAAATGATGTAAGAAGACTTGTTAAACTACTCATCAG : GAGATGGAAAGATATTGTTGATGAATGGGTGAGATTAAATACACTAATGGAAGACACAG : ATGAAGCGAATATTTCAAATGATTCATCATCTTATTGCGATCATAAG : CATAGCGTCGAGAAGAGGAACAACATTAGTCCATCGTCAAAGCGGCTACGTGAGGATTACCTAGAAGAACATTATG</gDNA_template>
            <first_frame> C  P  *  L  L  L  L  S  F  P  Y  A  L  F  L  S  E  H  I  F  F  S  Y  N  L  R  N  N  N  N  M  E  L  D  E  L  R  L  I  L  K  N  S  S  V  D  L  W  G  L  I  D  T  A  I  S  V  A  I  L  D  H  G  N  E  L  R  S  R  R  D  A  I  V  E  K  L  Y  V  P  L  L  S  N  N  S  N  S  D  G  N  Y  E  I  M  K  R  I  E  R  N  I  D  D  D  K  L  K  T  E  E  N  S  N  E  E  D  L  E  I  S  K  I  L  R  I  K  N  H  F  E  I  P  N  Q  :  S  E  K  C  L  V  D  Q  L  Q  S  L  A  E  M  D  I  N  F  K  V  L  E  :  K  T  N  I  G  R  H  V  N  K  L  R  K  H  S  S  N  D  V  R  R  L  V  K  L  L  I  R :   R  W  K  D  I  V  D  E  W  V  R  L  N  T  L  M  E  D  T   : D  E  A  N  I  S  N  D  S  S  S  Y  C  D  H  K  :  H  S  V  E  K  R  N  N  I  S  P  S  S  K  R  L  R  E  D  Y  L  E  E  H  Y  </first_frame>
            <second_frame>  V  P  N  S  S  F  S  L  F  L  M  L  C  F  L  V  N  T  S  F  F  L  I  I  *  E  T  T  T  T  W  N  W  M  N  Y  V  *  S  *  R  I  Q  V  W  T  C  G  V  *  L  T  Q  Q  F  L  *  P  F  L  I  M  E  T  S  F  A  V  E  E  T  P  L  L  R  N  S  M  F  L  C  F  L  T  I  L  I  L  M  E  I  M  K  S  *  K  E  L  R  E  I  S  M  M  T  S  *  K  Q  R  K  I  V  M  K  K  I  *  R  S  A  K  S  S  E  S  R  T  I  L  K  S  Q  I  S :   L  R  N  A  W  L  I  S  F  K  V  L  L  K  W  T  L  I  S  R  F  L  R :   K  Q  I  L  E  G  M  *  T  S  C  E  S  I  H  Q  M  M  *  E  D  L  L  N  Y  S  S   : G  D  G  K  I  L  L  M  N  G  *  D  *  I  H  *  W  K  T  Q  :  M  K  R  I  F  Q  M  I  H  H  L  I  A  I  I  S :   I  A  S  R  R  G  T  T  L  V  H  R  Q  S  G  Y  V  R  I  T  *  K  N  I  M </second_frame>
            <third_frame>   S  L  T  P  P  S  L  F  S  L  C  S  V  S  *  *  T  H  L  F  F  L  *  F  K  K  Q  Q  Q  H  G  I  G  *  I  T  S  N  L  K  E  F  K  C  G  L  V  G  F  N  *  H  S  N  F  C  S  H  S  *  S  W  K  R  A  S  Q  S  K  R  R  H  C  *  E  T  L  C  S  S  A  F  *  Q  F  *  F  *  W  K  L  *  N  H  E  K  N  *  E  K  Y  R  *  *  Q  V  K  N  R  G  K  *  *  *  R  R  F  R  D  Q  Q  N  P  Q  N  Q  E  P  F  *  N  P  K  S   : V  *  E  M  L  G  *  S  A  S  K  S  C  *  N  G  H  *  F  Q  G  S  *   : E  N  K  Y  W  K  A  C  K  Q  A  A  K  A  F  I  K  *  C  K  K  T  C  *  T  T  H  Q  :  E  M  E  R  Y  C  *  *  M  G  E  I  K  Y  T  N  G  R  H  R :   *  S  E  Y  F  K  *  F  I  I  L  L  R  S  *   : A  *  R  R  E  E  E  Q  H  *  S  I  V  K  A  A  T  *  G  L  P  R  R  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19955" stop="19560"/>
                    <exon start="19408" stop="19340"/>
                    <exon start="19108" stop="19026"/>
                    <exon start="18906" stop="18848"/>
                    <exon start="18736" stop="18690"/>
                    <exon start="18597" stop="18523"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLLSFPYALFLSEHIFFSYNLRNNNNMELDELRLILKNSSVDLWGLIDTAISVAILDHGNELRSRRDAIVEKLYVPLLSNNSNSDGNYEIMKRIERNIDDDKLKTEENSNEEDLEISKILRIKNHFEIPNQSEKCLVDQLQSLAEMDINFKVLEKTNIGRHVNKLRKHSSNDVRRLVKLLIRRWKDIVDEWVRLNTLMEDTDEANISNDSSSYCDHKHSVEKRNNISPSSKRLREDYLEEHY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="39843" PGL_stop="49056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39843" e_stop="39945"/>
            <exon e_start="40596" e_stop="41016"/>
            <exon e_start="42830" e_stop="42978"/>
            <exon e_start="43917" e_stop="44159"/>
            <exon e_start="44997" e_stop="45108"/>
            <exon e_start="46137" e_stop="46307"/>
            <exon e_start="47489" e_stop="47552"/>
            <exon e_start="48383" e_stop="48440"/>
            <exon e_start="48531" e_stop="48708"/>
            <exon e_start="49018" e_stop="49056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.083" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.657" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.872" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39843" e_stop="39945" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.083">
            <gDNA_intron_boundary i_start="39946" i_stop="40595" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40596" e_stop="41016" e_length="421"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41017" i_stop="42829" i_length="1813"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42830" e_stop="42978" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.657" acc_prob="0.984">
            <gDNA_intron_boundary i_start="42979" i_stop="43916" i_length="938"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43917" e_stop="44159" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44160" i_stop="44996" i_length="837"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44997" e_stop="45108" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.821" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45109" i_stop="46136" i_length="1028"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46137" e_stop="46307" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46308" i_stop="47488" i_length="1181"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47489" e_stop="47552" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.839">
            <gDNA_intron_boundary i_start="47553" i_stop="48382" i_length="830"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48383" e_stop="48440" e_length="58"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="48441" i_stop="48530" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="48531" e_stop="48708" e_length="178"/>
          </exon>
          <intron i_serial="9" don_prob="0.985" acc_prob="0.872">
            <gDNA_intron_boundary i_start="48709" i_stop="49017" i_length="309"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49018" e_stop="49056" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39843" stop="39945"/>
              <exon start="40596" stop="41016"/>
              <exon start="42830" stop="42978"/>
              <exon start="43917" stop="44159"/>
              <exon start="44997" stop="45108"/>
              <exon start="46137" stop="46307"/>
              <exon start="47489" stop="47552"/>
              <exon start="48383" stop="48440"/>
              <exon start="48531" stop="48708"/>
              <exon start="49018" stop="49056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTTTAAGTCTTGGATTGAGCAGAAAAGAAGACTTTTTTCATCAGTTTTTCAAGAATATTTAGTGTGAAGTGATTAGCATTCTCTTTGATAATCTTAATGA : GTTTTGATGCACAGGATTGTTTATGAATTCTTTGGTTGCTGAATTTGCAAGTTTTTTATGTTAGTTGCTGAATCTGGAGTTTAGTTGAATTTGAGTTCTCTTACAGTTGTTTGCGAAGCTTGAAATTTTAGAAGAGTAGGTGTTCAGTTTGGTGAATTTAAGTGGTTTTGGAGTTCATCATTTGAAATGGATAGTAGTGGGCTTAATGGAAATCAGAGTACAAGGGATTCAGAAGTACCGAACAATGCTGATGAACGGTGTGATGCTACCTTTTCCGATGAATTAGATGGCTGGAGAACAAGTTCTTCATCACTTAAGGACATTAGGTCTTCAGATGAGCATACTGATGAGTGTTTGACTCCAGAAATGAAATACGAGAGCACACATCGGAGTTCTAGTCCTCCGCCTCAAGCTCGGAGAG : GTTTGGAGCACTGCATTACTGCACCTGTGACTATTGGCGGAGGTCTTTTCCCTGAAGGCCAGGATATGGCATTTTCAAGATCTTTGACTGAGAGGAGGGTTAGTCCAAGACATAATGTAATATTGGATAGACTTTCTGAACGTGGAAAG : CAAAAGCTCATCGCAGAGCTGGTAAAGATCCAAGGGGATGGAACAGTAGAGGTTGACCTTACTAAGAGTACGCCTGAAACTTCTGAATTGTTGGAGCTGCGATCTGTTGAAGAACCCACTCTTACTGTAGACAGGATTATCACAGATTTTAATAAGTCAGTTCCAAAGTTGAAAATCGTGGTGCTTATTGTTGGAACCAGGGGAGATGTTCAACCATTTTTGGCTATGGCCAAGAGACTTCAG : GCGTTTGGTCATCATGTCAGGCTGGCAACTCATTCTAACTTCCGTGATTTTGTCAAATCAGGAGGCATAGACTACTACCCATTGGGTGGTGATCCTCGGGTATTGGCAGGAT : ATATGGCCAGGAACAAAGGTCTCATTCCTTCTGGACCAGGAGAGATATCTGTACAACGAAAGCAGCTAAAGGCTATAATTGAATCTCTTCTTCCGGCTTGCACTGAGCCAGATATTGAAACTGGTGAACCTTTCAGAGCACAAGCGATTATTGCAAATCCTCCTGCTTATG : GACATGCACACGTTGCTGAAGCTCTTGGGGTACCCCTCCACATCTTCTTCACAATGCCCTGGAC : GCCAACTTCTGAATTTCCTCACCCGATGGCTCGTGTACCTCAACCTGCTGCGTATTGG : CTTTCCTACATACTCGTGGATTTACTTGTCTGGTGGGGCATAAGAGGCTACATCAACGATTTTAGGAAAAAGAAGTTAAACCTTCCTCCTATCGCCTACTTCAGTACATACCACGGATCAATTTCTCACTTCCCAACTGGCTACATGTGGAGTCCACATGTTGTGCCAAAGCCTAAAG : ATTGGGGCTCTTTGGTTGATATTGTTGGCTATTGTTTCT</gDNA_template>
            <first_frame> P  F  *  V  L  D  *  A  E  K  K  T  F  F  I  S  F  S  R  I  F  S  V  K  *  L  A  F  S  L  I  I  L  M   : S  F  D  A  Q  D  C  L  *  I  L  W  L  L  N  L  Q  V  F  Y  V  S  C  *  I  W  S  L  V  E  F  E  F  S  Y  S  C  L  R  S  L  K  F  *  K  S  R  C  S  V  W  *  I  *  V  V  L  E  F  I  I  *  N  G  *  *  W  A  *  W  K  S  E  Y  K  G  F  R  S  T  E  Q  C  *  *  T  V  *  C  Y  L  F  R  *  I  R  W  L  E  N  K  F  F  I  T  *  G  H  *  V  F  R  *  A  Y  *  *  V  F  D  S  R  N  E  I  R  E  H  T  S  E  F  *  S  S  A  S  S  S  E  R :   F  G  A  L  H  Y  C  T  C  D  Y  W  R  R  S  F  P  *  R  P  G  Y  G  I  F  K  I  F  D  *  E  E  G  *  S  K  T  *  C  N  I  G  *  T  F  *  T  W  K   : A  K  A  H  R  R  A  G  K  D  P  R  G  W  N  S  R  G  *  P  Y  *  E  Y  A  *  N  F  *  I  V  G  A  A  I  C  *  R  T  H  S  Y  C  R  Q  D  Y  H  R  F  *  *  V  S  S  K  V  E  N  R  G  A  Y  C  W  N  Q  G  R  C  S  T  I  F  G  Y  G  Q  E  T  S   : G  V  W  S  S  C  Q  A  G  N  S  F  *  L  P  *  F  C  Q  I  R  R  H  R  L  L  P  I  G  W  *  S  S  G  I  G  R  I :   Y  G  Q  E  Q  R  S  H  S  F  W  T  R  R  D  I  C  T  T  K  A  A  K  G  Y  N  *  I  S  S  S  G  L  H  *  A  R  Y  *  N  W  *  T  F  Q  S  T  S  D  Y  C  K  S  S  C  L  W :   T  C  T  R  C  *  S  S  W  G  T  P  P  H  L  L  H  N  A  L  D  :  A  N  F  *  I  S  S  P  D  G  S  C  T  S  T  C  C  V  L   : A  F  L  H  T  R  G  F  T  C  L  V  G  H  K  R  L  H  Q  R  F  *  E  K  E  V  K  P  S  S  Y  R  L  L  Q  Y  I  P  R  I  N  F  S  L  P  N  W  L  H  V  E  S  T  C  C  A  K  A  *  R :   L  G  L  F  G  *  Y  C  W  L  L  F   </first_frame>
            <second_frame>  L  F  K  S  W  I  E  Q  K  R  R  L  F  S  S  V  F  Q  E  Y  L  V  *  S  D  *  H  S  L  *  *  S  *  *  :  V  L  M  H  R  I  V  Y  E  F  F  G  C  *  I  C  K  F  F  M  L  V  A  E  S  G  V  *  L  N  L  S  S  L  T  V  V  C  E  A  *  N  F  R  R  V  G  V  Q  F  G  E  F  K  W  F  W  S  S  S  F  E  M  D  S  S  G  L  N  G  N  Q  S  T  R  D  S  E  V  P  N  N  A  D  E  R  C  D  A  T  F  S  D  E  L  D  G  W  R  T  S  S  S  S  L  K  D  I  R  S  S  D  E  H  T  D  E  C  L  T  P  E  M  K  Y  E  S  T  H  R  S  S  S  P  P  P  Q  A  R  R   : G  L  E  H  C  I  T  A  P  V  T  I  G  G  G  L  F  P  E  G  Q  D  M  A  F  S  R  S  L  T  E  R  R  V  S  P  R  H  N  V  I  L  D  R  L  S  E  R  G  K  :  Q  K  L  I  A  E  L  V  K  I  Q  G  D  G  T  V  E  V  D  L  T  K  S  T  P  E  T  S  E  L  L  E  L  R  S  V  E  E  P  T  L  T  V  D  R  I  I  T  D  F  N  K  S  V  P  K  L  K  I  V  V  L  I  V  G  T  R  G  D  V  Q  P  F  L  A  M  A  K  R  L  Q  :  A  F  G  H  H  V  R  L  A  T  H  S  N  F  R  D  F  V  K  S  G  G  I  D  Y  Y  P  L  G  G  D  P  R  V  L  A  G   : Y  M  A  R  N  K  G  L  I  P  S  G  P  G  E  I  S  V  Q  R  K  Q  L  K  A  I  I  E  S  L  L  P  A  C  T  E  P  D  I  E  T  G  E  P  F  R  A  Q  A  I  I  A  N  P  P  A  Y   : G  H  A  H  V  A  E  A  L  G  V  P  L  H  I  F  F  T  M  P  W  T :   P  T  S  E  F  P  H  P  M  A  R  V  P  Q  P  A  A  Y  W  :  L  S  Y  I  L  V  D  L  L  V  W  W  G  I  R  G  Y  I  N  D  F  R  K  K  K  L  N  L  P  P  I  A  Y  F  S  T  Y  H  G  S  I  S  H  F  P  T  G  Y  M  W  S  P  H  V  V  P  K  P  K   : D  W  G  S  L  V  D  I  V  G  Y  C  F  </second_frame>
            <third_frame>   F  L  S  L  G  L  S  R  K  E  D  F  F  H  Q  F  F  K  N  I  *  C  E  V  I  S  I  L  F  D  N  L  N  E :   F  *  C  T  G  L  F  M  N  S  L  V  A  E  F  A  S  F  L  C  *  L  L  N  L  E  F  S  *  I  *  V  L  L  Q  L  F  A  K  L  E  I  L  E  E  *  V  F  S  L  V  N  L  S  G  F  G  V  H  H  L  K  W  I  V  V  G  L  M  E  I  R  V  Q  G  I  Q  K  Y  R  T  M  L  M  N  G  V  M  L  P  F  P  M  N  *  M  A  G  E  Q  V  L  H  H  L  R  T  L  G  L  Q  M  S  I  L  M  S  V  *  L  Q  K  *  N  T  R  A  H  I  G  V  L  V  L  R  L  K  L  G  E  :  V  W  S  T  A  L  L  H  L  *  L  L  A  E  V  F  S  L  K  A  R  I  W  H  F  Q  D  L  *  L  R  G  G  L  V  Q  D  I  M  *  Y  W  I  D  F  L  N  V  E  S :   K  S  S  S  Q  S  W  *  R  S  K  G  M  E  Q  *  R  L  T  L  L  R  V  R  L  K  L  L  N  C  W  S  C  D  L  L  K  N  P  L  L  L  *  T  G  L  S  Q  I  L  I  S  Q  F  Q  S  *  K  S  W  C  L  L  L  E  P  G  E  M  F  N  H  F  W  L  W  P  R  D  F  R :   R  L  V  I  M  S  G  W  Q  L  I  L  T  S  V  I  L  S  N  Q  E  A  *  T  T  T  H  W  V  V  I  L  G  Y  W  Q  D  :  I  W  P  G  T  K  V  S  F  L  L  D  Q  E  R  Y  L  Y  N  E  S  S  *  R  L  *  L  N  L  F  F  R  L  A  L  S  Q  I  L  K  L  V  N  L  S  E  H  K  R  L  L  Q  I  L  L  L  M  :  D  M  H  T  L  L  K  L  L  G  Y  P  S  T  S  S  S  Q  C  P  G   : R  Q  L  L  N  F  L  T  R  W  L  V  Y  L  N  L  L  R  I  G :   F  P  T  Y  S  W  I  Y  L  S  G  G  A  *  E  A  T  S  T  I  L  G  K  R  S  *  T  F  L  L  S  P  T  S  V  H  T  T  D  Q  F  L  T  S  Q  L  A  T  C  G  V  H  M  L  C  Q  S  L  K  :  I  G  A  L  W  L  I  L  L  A  I  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40719" stop="41016"/>
                    <exon start="42830" stop="42978"/>
                    <exon start="43917" stop="44159"/>
                    <exon start="44997" stop="45108"/>
                    <exon start="46137" stop="46307"/>
                    <exon start="47489" stop="47552"/>
                    <exon start="48383" stop="48440"/>
                    <exon start="48531" stop="48708"/>
                    <exon start="49018" stop="49055"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRRVGVQFGEFKWFWSSSFEMDSSGLNGNQSTRDSEVPNNADERCDATFSDELDGWRTSSSSLKDIRSSDEHTDECLTPEMKYESTHRSSSPPPQARRGLEHCITAPVTIGGGLFPEGQDMAFSRSLTERRVSPRHNVILDRLSERGKQKLIAELVKIQGDGTVEVDLTKSTPETSELLELRSVEEPTLTVDRIITDFNKSVPKLKIVVLIVGTRGDVQPFLAMAKRLQAFGHHVRLATHSNFRDFVKSGGIDYYPLGGDPRVLAGYMARNKGLIPSGPGEISVQRKQLKAIIESLLPACTEPDIETGEPFRAQAIIANPPAYGHAHVAEALGVPLHIFFTMPWTPTSEFPHPMARVPQPAAYWLSYILVDLLVWWGIRGYINDFRKKKLNLPPIAYFSTYHGSISHFPTGYMWSPHVVPKPKDWGSLVDIVGYCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="50814" PGL_stop="51490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50814" e_stop="50938"/>
            <exon e_start="51058" e_stop="51490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50814" e_stop="50938" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.975">
            <gDNA_intron_boundary i_start="50939" i_stop="51057" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="51058" e_stop="51490" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50814" stop="50938"/>
              <exon start="51058" stop="51490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGTGATCAATTCTTCTGGGGCGATAGAATTCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCTATAACATTTATGCTTCAGCCTGAT : GTGAAATCCCGAGTAATGGAACTAGCTGTATTATTAGAGAACGAAGATGGTGTTGCAGGTGCAGTTGATGCTTTCCATCGGCATTTGCCTTCAGAAATGCCATTGCCAACCCCAACCCCGGCTTATGAGGATATCGATGGTCCAAATCCGTTACAATGGCTTTTCACAAGGATTGGAAGAATCTGTTGCCTGCCTTGTGGTTCTTGGCTCTGAAACTGCATTTATAGAGTTGCATAGTTGTGTTATTTCATATTTTTTTTTGATTAATTGGTTGTATTGGTTCATCACATCATTCTTTCTTCTTGGCTTGTAAAATAAGTTACATGGCAAAACTTTATAGACATATTTATTGCTATTATTTTCATAGTGATTTTGTAACAACACCAAGCTCTTGTTCATTTTAGTGTTCAATGATCGCTTTGCAGAGACAGAG</gDNA_template>
            <first_frame> S  V  I  N  S  S  G  A  I  E  F  M  K  R  D  W  D  L  L  Q  F  L  L  T  S  L  V  *  K  D  S  L  M  L  *  H  L  C  F  S  L  M :   *  N  P  E  *  W  N  *  L  Y  Y  *  R  T  K  M  V  L  Q  V  Q  L  M  L  S  I  G  I  C  L  Q  K  C  H  C  Q  P  Q  P  R  L  M  R  I  S  M  V  Q  I  R  Y  N  G  F  S  Q  G  L  E  E  S  V  A  C  L  V  V  L  G  S  E  T  A  F  I  E  L  H  S  C  V  I  S  Y  F  F  L  I  N  W  L  Y  W  F  I  T  S  F  F  L  L  G  L  *  N  K  L  H  G  K  T  L  *  T  Y  L  L  L  L  F  S  *  *  F  C  N  N  T  K  L  L  F  I  L  V  F  N  D  R  F  A  E  T  E </first_frame>
            <second_frame>  R  *  S  I  L  L  G  R  *  N  S  *  K  G  T  G  T  C  S  N  S  Y  *  Q  A  *  C  R  R  T  L  *  C  Y  N  I  Y  A  S  A  *   : C  E  I  P  S  N  G  T  S  C  I  I  R  E  R  R  W  C  C  R  C  S  *  C  F  P  S  A  F  A  F  R  N  A  I  A  N  P  N  P  G  L  *  G  Y  R  W  S  K  S  V  T  M  A  F  H  K  D  W  K  N  L  L  P  A  L  W  F  L  A  L  K  L  H  L  *  S  C  I  V  V  L  F  H  I  F  F  *  L  I  G  C  I  G  S  S  H  H  S  F  F  L  A  C  K  I  S  Y  M  A  K  L  Y  R  H  I  Y  C  Y  Y  F  H  S  D  F  V  T  T  P  S  S  C  S  F  *  C  S  M  I  A  L  Q  R  Q   </second_frame>
            <third_frame>   G  D  Q  F  F  W  G  D  R  I  H  E  K  G  L  G  P  A  P  I  P  I  D  K  L  S  V  E  G  L  S  D  A  I  T  F  M  L  Q  P  D  :  V  K  S  R  V  M  E  L  A  V  L  L  E  N  E  D  G  V  A  G  A  V  D  A  F  H  R  H  L  P  S  E  M  P  L  P  T  P  T  P  A  Y  E  D  I  D  G  P  N  P  L  Q  W  L  F  T  R  I  G  R  I  C  C  L  P  C  G  S  W  L  *  N  C  I  Y  R  V  A  *  L  C  Y  F  I  F  F  F  D  *  L  V  V  L  V  H  H  I  I  L  S  S  W  L  V  K  *  V  T  W  Q  N  F  I  D  I  F  I  A  I  I  F  I  V  I  L  *  Q  H  Q  A  L  V  H  F  S  V  Q  *  S  L  C  R  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50816" stop="50938"/>
                    <exon start="51058" stop="51270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDQFFWGDRIHEKGLGPAPIPIDKLSVEGLSDAITFMLQPDVKSRVMELAVLLENEDGVAGAVDAFHRHLPSEMPLPTPTPAYEDIDGPNPLQWLFTRIGRICCLPCGSWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51095" stop="51370"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTKMVLQVQLMLSIGICLQKCHCQPQPRLMRISMVQIRYNGFSQGLEESVACLVVLGSETAFIELHSCVISYFFLINWLYWFITSFFLLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="58652" PGL_stop="61955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58652" e_stop="58869"/>
            <exon e_start="60538" e_stop="60626"/>
            <exon e_start="60805" e_stop="60982"/>
            <exon e_start="61676" e_stop="61955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58652" e_stop="58869" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.902">
            <gDNA_intron_boundary i_start="58870" i_stop="60537" i_length="1668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60538" e_stop="60626" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60627" i_stop="60804" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60805" e_stop="60982" e_length="178"/>
          </exon>
          <intron i_serial="3" don_prob="0.834" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60983" i_stop="61675" i_length="693"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="61676" e_stop="61955" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58652" stop="58869"/>
              <exon start="60538" stop="60626"/>
              <exon start="60805" stop="60982"/>
              <exon start="61676" stop="61955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCGCGTTTTCTTCCTTCCAAAAATGGCATTTTCTATAGCTGCTGCCGGAGCCGCTACCGGAGCCGGAGCTTTGGCTTCTCCATCGGCGAATGGCTCTTCTTCTACCAAGTTTTCTTACTTGGCTTCTTTGCAATTTCCCAGAGAGCTTCGTCGTGTTCAAATTGGGAACTATGGGTTGAAGTCAAAGAAAGGGTCTTCACGTCTTGTTCCTCTG : GTTGAAGCAAAGAAGCAAACATTTTCTTCCTTTGAAGATATGTTGGAGAACTCTGAGAAACCATTATTGGTCGACTTCTATGCAACCTG : GTGTGGTCCTTGCCAGTTCATGGTTCCTATTCTAAACGAAGTTGGTGAATCGATGAAAGATAAAATTCAAGTGGTGAAAATTGATACAGAGAAGTACCCAGCTCTCGCAGACAAGTACAAAATACAGGCGTTGCCAACCTTCATATTGTTCAAGGATGGAGACGTTTGTGATCGCTTT : GAGGGCGCACTCAATGCTCCTCAATTGATGCAACGCATAAAATCTGCACTGGAAGTAAAGCAGTAGTCTTAGCGTGCTGCCTTTCTAGTGCTCGAATCATCGTTTTGAAGTTATTCATGTTTAAATTTCAATGATCGTGTTCTGTGGAAGCCTTCAGTTTCTCGCTCCATGTATTTGCAAAGAAAATTGATTAGATACAGGTGTACAATGATTAATCAATTTGCCCTAACTGCTCTAATTTTTTTCTCCCTTAAAATATGATTAAACTTTAATTTTTTAA</gDNA_template>
            <first_frame> F  L  A  F  S  S  F  Q  K  W  H  F  L  *  L  L  P  E  P  L  P  E  P  E  L  W  L  L  H  R  R  M  A  L  L  L  P  S  F  L  T  W  L  L  C  N  F  P  E  S  F  V  V  F  K  L  G  T  M  G  *  S  Q  R  K  G  L  H  V  L  F  L  W :   L  K  Q  R  S  K  H  F  L  P  L  K  I  C  W  R  T  L  R  N  H  Y  W  S  T  S  M  Q  P   : G  V  V  L  A  S  S  W  F  L  F  *  T  K  L  V  N  R  *  K  I  K  F  K  W  *  K  L  I  Q  R  S  T  Q  L  S  Q  T  S  T  K  Y  R  R  C  Q  P  S  Y  C  S  R  M  E  T  F  V  I  A  L :   R  A  H  S  M  L  L  N  *  C  N  A  *  N  L  H  W  K  *  S  S  S  L  S  V  L  P  F  *  C  S  N  H  R  F  E  V  I  H  V  *  I  S  M  I  V  F  C  G  S  L  Q  F  L  A  P  C  I  C  K  E  N  *  L  D  T  G  V  Q  *  L  I  N  L  P  *  L  L  *  F  F  S  P  L  K  Y  D  *  T  L  I  F  * </first_frame>
            <second_frame>  F  S  R  F  L  P  S  K  N  G  I  F  Y  S  C  C  R  S  R  Y  R  S  R  S  F  G  F  S  I  G  E  W  L  F  F  Y  Q  V  F  L  L  G  F  F  A  I  S  Q  R  A  S  S  C  S  N  W  E  L  W  V  E  V  K  E  R  V  F  T  S  C  S  S   : G  *  S  K  E  A  N  I  F  F  L  *  R  Y  V  G  E  L  *  E  T  I  I  G  R  L  L  C  N  L  :  V  W  S  L  P  V  H  G  S  Y  S  K  R  S  W  *  I  D  E  R  *  N  S  S  G  E  N  *  Y  R  E  V  P  S  S  R  R  Q  V  Q  N  T  G  V  A  N  L  H  I  V  Q  G  W  R  R  L  *  S  L   : *  G  R  T  Q  C  S  S  I  D  A  T  H  K  I  C  T  G  S  K  A  V  V  L  A  C  C  L  S  S  A  R  I  I  V  L  K  L  F  M  F  K  F  Q  *  S  C  S  V  E  A  F  S  F  S  L  H  V  F  A  K  K  I  D  *  I  Q  V  Y  N  D  *  S  I  C  P  N  C  S  N  F  F  L  P  *  N  M  I  K  L  *  F  F   </second_frame>
            <third_frame>   S  R  V  F  F  L  P  K  M  A  F  S  I  A  A  A  G  A  A  T  G  A  G  A  L  A  S  P  S  A  N  G  S  S  S  T  K  F  S  Y  L  A  S  L  Q  F  P  R  E  L  R  R  V  Q  I  G  N  Y  G  L  K  S  K  K  G  S  S  R  L  V  P  L  :  V  E  A  K  K  Q  T  F  S  S  F  E  D  M  L  E  N  S  E  K  P  L  L  V  D  F  Y  A  T  W :   C  G  P  C  Q  F  M  V  P  I  L  N  E  V  G  E  S  M  K  D  K  I  Q  V  V  K  I  D  T  E  K  Y  P  A  L  A  D  K  Y  K  I  Q  A  L  P  T  F  I  L  F  K  D  G  D  V  C  D  R  F  :  E  G  A  L  N  A  P  Q  L  M  Q  R  I  K  S  A  L  E  V  K  Q  *  S  *  R  A  A  F  L  V  L  E  S  S  F  *  S  Y  S  C  L  N  F  N  D  R  V  L  W  K  P  S  V  S  R  S  M  Y  L  Q  R  K  L  I  R  Y  R  C  T  M  I  N  Q  F  A  L  T  A  L  I  F  F  S  L  K  I  *  L  N  F  N  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58654" stop="58869"/>
                    <exon start="60538" stop="60626"/>
                    <exon start="60805" stop="60982"/>
                    <exon start="61676" stop="61741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRVFFLPKMAFSIAAAGAATGAGALASPSANGSSSTKFSYLASLQFPRELRRVQIGNYGLKSKKGSSRLVPLVEAKKQTFSSFEDMLENSEKPLLVDFYATWCGPCQFMVPILNEVGESMKDKIQVVKIDTEKYPALADKYKIQALPTFILFKDGDVCDRFEGALNAPQLMQRIKSALEVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="62966" PGL_stop="65529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62966" e_stop="63061"/>
            <exon e_start="63168" e_stop="63271"/>
            <exon e_start="64045" e_stop="64143"/>
            <exon e_start="65221" e_stop="65529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62966" e_stop="63061" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.854">
            <gDNA_intron_boundary i_start="63062" i_stop="63167" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63168" e_stop="63271" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63272" i_stop="64044" i_length="773"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64045" e_stop="64143" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64144" i_stop="65220" i_length="1077"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="65221" e_stop="65529" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62966" stop="63061"/>
              <exon start="63168" stop="63271"/>
              <exon start="64045" stop="64143"/>
              <exon start="65221" stop="65529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATATGTCCAGCAGCTACGGAGACTGGTGCTGCTGGCATTGGACATGAATCAATTAGTAGTAATACTGAACTTCAGAAATCCATGTCAGTTATTG : GTGGAAGTGAAGCATGTGGTCCGAAGATAATCCTTAGAAGTATAAAGGGCATCCAAAGAAGTGAAGAAGTGTTGATTTCATACACTGACTTGTTACAGCCTAAG : GTGATGAGGCAATCAGAGTTGTGGTCGAAGTACAGGTTCAGTTGCTGCTGTAAACGATGTAGATCAATGCCTATGACTTATATGGATCATTGTCTGCAG : GAAATCTTAATTTTAAATCTCGATAGTTCAAATATGGCTACTGGTGACAACTTCTATGAGGAACATGTAATGGAGAAGCTGATTGATTGCTTGGATGACGCTATAGATGACTTCCTGTCATTTAATAACCCCAAGAATTGTTGTGAAAAACTCGAGATCCTGCTTACTCAAGATCATGTTAACGTTCTTCTAAAGCCTGACGGAGAAAAATTACATCAACTCTTCAGATTACATCCTCTTCACCATGTCTCTTTGCATGCCATCCTGACACTTGCTTCTGCATACAAAGTCTCTGTAAGTGAACTGCTG</gDNA_template>
            <first_frame> G  Y  V  Q  Q  L  R  R  L  V  L  L  A  L  D  M  N  Q  L  V  V  I  L  N  F  R  N  P  C  Q  L  L  :  V  E  V  K  H  V  V  R  R  *  S  L  E  V  *  R  A  S  K  E  V  K  K  C  *  F  H  T  L  T  C  Y  S  L  R :   *  *  G  N  Q  S  C  G  R  S  T  G  S  V  A  A  V  N  D  V  D  Q  C  L  *  L  I  W  I  I  V  C  R :   K  S  *  F  *  I  S  I  V  Q  I  W  L  L  V  T  T  S  M  R  N  M  *  W  R  S  *  L  I  A  W  M  T  L  *  M  T  S  C  H  L  I  T  P  R  I  V  V  K  N  S  R  S  C  L  L  K  I  M  L  T  F  F  *  S  L  T  E  K  N  Y  I  N  S  S  D  Y  I  L  F  T  M  S  L  C  M  P  S  *  H  L  L  L  H  T  K  S  L  *  V  N  C   </first_frame>
            <second_frame>  D  M  S  S  S  Y  G  D  W  C  C  W  H  W  T  *  I  N  *  *  *  Y  *  T  S  E  I  H  V  S  Y  W :   W  K  *  S  M  W  S  E  D  N  P  *  K  Y  K  G  H  P  K  K  *  R  S  V  D  F  I  H  *  L  V  T  A  *   : G  D  E  A  I  R  V  V  V  E  V  Q  V  Q  L  L  L  *  T  M  *  I  N  A  Y  D  L  Y  G  S  L  S  A   : G  N  L  N  F  K  S  R  *  F  K  Y  G  Y  W  *  Q  L  L  *  G  T  C  N  G  E  A  D  *  L  L  G  *  R  Y  R  *  L  P  V  I  *  *  P  Q  E  L  L  *  K  T  R  D  P  A  Y  S  R  S  C  *  R  S  S  K  A  *  R  R  K  I  T  S  T  L  Q  I  T  S  S  S  P  C  L  F  A  C  H  P  D  T  C  F  C  I  Q  S  L  C  K  *  T  A  </second_frame>
            <third_frame>   I  C  P  A  A  T  E  T  G  A  A  G  I  G  H  E  S  I  S  S  N  T  E  L  Q  K  S  M  S  V  I   : G  G  S  E  A  C  G  P  K  I  I  L  R  S  I  K  G  I  Q  R  S  E  E  V  L  I  S  Y  T  D  L  L  Q  P  K  :  V  M  R  Q  S  E  L  W  S  K  Y  R  F  S  C  C  C  K  R  C  R  S  M  P  M  T  Y  M  D  H  C  L  Q  :  E  I  L  I  L  N  L  D  S  S  N  M  A  T  G  D  N  F  Y  E  E  H  V  M  E  K  L  I  D  C  L  D  D  A  I  D  D  F  L  S  F  N  N  P  K  N  C  C  E  K  L  E  I  L  L  T  Q  D  H  V  N  V  L  L  K  P  D  G  E  K  L  H  Q  L  F  R  L  H  P  L  H  H  V  S  L  H  A  I  L  T  L  A  S  A  Y  K  V  S  V  S  E  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62968" stop="63061"/>
                    <exon start="63168" stop="63271"/>
                    <exon start="64045" stop="64143"/>
                    <exon start="65221" stop="65529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICPAATETGAAGIGHESISSNTELQKSMSVIGGSEACGPKIILRSIKGIQRSEEVLISYTDLLQPKVMRQSELWSKYRFSCCCKRCRSMPMTYMDHCLQEILILNLDSSNMATGDNFYEEHVMEKLIDCLDDAIDDFLSFNNPKNCCEKLEILLTQDHVNVLLKPDGEKLHQLFRLHPLHHVSLHAILTLASAYKVSVSELL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="70204" PGL_stop="71230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70204" e_stop="70402"/>
            <exon e_start="70879" e_stop="71230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70204" e_stop="70402" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70403" i_stop="70878" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70879" e_stop="71230" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70204" stop="70402"/>
              <exon start="70879" stop="71230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAATCAACAATTAATTTAGTGAAGAAAATATTATAATATTAATATGGCTGAAGAGAAACAACATCACCGTTTGTTCCACCACAAGAACAGAGAGGAAGAAGGTGGTCCAGTTGATCATAAAAAAAAAGTGAAGCACCATAGCCATCTCCAGAAAATTGGTGAACTTGGTGCTGTTGCTGCCGGTGCTTACGCCTTG : CATGAGAAGCACAAGGCAAAGAAAGACCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCCAAGAAAGAGAAAAAGGCAGCTGAGAAAGGACGACACCACTAATTAAATTTAAGTCACCCATCTATGGACTGCATAAAATAAATAAAAGTTACTATATATGTATATATATTATGTGTTTTATGTTCAGTTTAAATTTAATTTATGTCCAGTGTGTATTAGAATGGTGTTTCTCACCTTGTAACACTTTTTCTATAATTCTATTCATTAATTTGTTTTTTCA</gDNA_template>
            <first_frame> V  *  S  T  I  N  L  V  K  K  I  L  *  Y  *  Y  G  *  R  E  T  T  S  P  F  V  P  P  Q  E  Q  R  G  R  R  W  S  S  *  S  *  K  K  S  E  A  P  *  P  S  P  E  N  W  *  T  W  C  C  C  C  R  C  L  R  L   : A  *  E  A  Q  G  K  E  R  P  R  E  C  T  Q  T  Q  D  K  T  R  D  S  S  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  E  R  S  Q  E  R  E  K  G  S  *  E  R  T  T  P  L  I  K  F  K  S  P  I  Y  G  L  H  K  I  N  K  S  Y  Y  I  C  I  Y  I  M  C  F  M  F  S  L  N  L  I  Y  V  Q  C  V  L  E  W  C  F  S  P  C  N  T  F  S  I  I  L  F  I  N  L  F  F   </first_frame>
            <second_frame>  F  N  Q  Q  L  I  *  *  R  K  Y  Y  N  I  N  M  A  E  E  K  Q  H  H  R  L  F  H  H  K  N  R  E  E  E  G  G  P  V  D  H  K  K  K  V  K  H  H  S  H  L  Q  K  I  G  E  L  G  A  V  A  A  G  A  Y  A  L  :  H  E  K  H  K  A  K  K  D  P  E  N  A  H  K  H  K  I  K  Q  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  E  A  K  K  E  K  K  A  A  E  K  G  R  H  H  *  L  N  L  S  H  P  S  M  D  C  I  K  *  I  K  V  T  I  Y  V  Y  I  L  C  V  L  C  S  V  *  I  *  F  M  S  S  V  Y  *  N  G  V  S  H  L  V  T  L  F  L  *  F  Y  S  L  I  C  F  F  </second_frame>
            <third_frame>   L  I  N  N  *  F  S  E  E  N  I  I  I  L  I  W  L  K  R  N  N  I  T  V  C  S  T  T  R  T  E  R  K  K  V  V  Q  L  I  I  K  K  K  *  S  T  I  A  I  S  R  K  L  V  N  L  V  L  L  L  P  V  L  T  P  C :   M  R  S  T  R  Q  R  K  T  Q  R  M  H  T  N  T  R  *  N  K  R  *  Q  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  R  K  K  P  R  K  R  K  R  Q  L  R  K  D  D  T  T  N  *  I  *  V  T  H  L  W  T  A  *  N  K  *  K  L  L  Y  M  Y  I  Y  Y  V  F  Y  V  Q  F  K  F  N  L  C  P  V  C  I  R  M  V  F  L  T  L  *  H  F  F  Y  N  S  I  H  *  F  V  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70229" stop="70402"/>
                    <exon start="70879" stop="71052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKYYNINMAEEKQHHRLFHHKNREEEGGPVDHKKKVKHHSHLQKIGELGAVAAGAYALHEKHKAKKDPENAHKHKIKQEIAAVAAVGAGGFAFHEHHQKKEAKKEKKAAEKGRHH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71034" stop="71228"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTTPLIKFKSPIYGLHKINKSYYICIYIMCFMFSLNLIYVQCVLEWCFSPCNTFSIILFINLFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74894" PGL_stop="75070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74894" e_stop="75070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="74894" e_stop="75070" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74894" stop="75070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0094K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="76375" PGL_stop="77723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76375" e_stop="77723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="76375" e_stop="77723" e_length="1349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="77088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76896" stop="77554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76965" stop="77723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77368" stop="77699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAACCCAACAAAACTCCTTATTTCTAACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATGTCATCAATGAATACGATCACAAAGAGATCCAGATATGACTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCTATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCATTGCCCATATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCAAGGAAGAGGATACTTGTTCTTTATGGTTACCTTTTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTCCAAGATCAATACAGAAGTCAATATCCCTATCTGGCTGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGTACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCACCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAAGACCATTAGAAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAACCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  P  N  K  T  P  Y  F  *  H  I  S  R  S  Y  P  I  F  H  C  L  N  L  R  R  I  H  H  H  S  I  L  K  N  H  V  P  Q  E  G  H  R  I  *  P  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  C  H  Q  *  I  R  S  Q  R  D  P  D  M  T  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  G  Q  K  T  S  L  Q  I  R  N  A  Y  T  W  F  *  K  Q  S  L  A  H  S  L  P  I  F  S  I  D  D  N  R  I  L  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  K  E  E  D  T  C  S  L  W  L  P  F  L  V  V  C  S  L  C  T  F  E  N  S  H  P  S  S  S  Q  T  K  L  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  A  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  K  R  *  Y  V  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  V  E  K  A  K  S  Y  P  K  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  *  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  A  I  H  N  V  N  Q  R  P  L  E  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  K  T  M  Q  S  Q  T  R  R  L  P  V  M  T  A   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  N  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  K  T  T  C  P  K  K  D  T  A  S  S  Q  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  V  I  N  E  Y  D  H  K  E  I  Q  I  *  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  A  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  H  C  P  Y  F  Q  L  M  I  T  G  S  *  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  F  *  L  S  V  V  Y  A  H  S  K  T  P  I  L  L  L  H  K  Q  N  W  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  S  K  I  N  T  E  V  N  I  P  I  W  L  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  D  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  R  D  D  T  Y  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  H  H  R  F  S  I  T  I  Q  D  R  K  L  W  R  K  P  S  H  T  Q  N  Y  I  K  I  T  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  Q  F  T  M  *  I  K  D  H  *  K  M  R  K  I  H  M  K  M  *  S  Q  G  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  T  Q  Q  N  S  L  F  L  T  H  *  *  V  L  P  N  F  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  M  S  S  M  N  T  I  T  K  R  S  R  Y  D  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  L  Y  L  V  L  K  A  V  F  G  T  F  I  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  Q  G  R  G  Y  L  F  F  M  V  T  F  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  P  R  S  I  Q  K  S  I  S  L  S  G  C  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  I  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  I  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  K  I  T  S  K  S  P  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  S  K  T  I  R  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  Q  Y  K  N  H  A  I  T  N  Q  K  I  T  C  D  D  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77103" stop="77348"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGPRSIQKSISLSGCIPGRSAGNTSKNSRTTETDSIEGTWIVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76403" stop="76639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LANPTKLLISNTLVGLTQFFTVSILEGSTITPSLKTTCPKKDTASSQKLTLGEFGIKLFLPQHFQYHSQMLFMFLLAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77081" stop="77281"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRSKINTEVNIPIWLHTRKICREHIQKLTNHRNRLNRRYLDSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76572" stop="76769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNMSSMNTITKRSRYDLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="78393" PGL_stop="76948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78393" e_stop="78207"/>
            <exon e_start="77461" e_stop="76948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.930"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="78393" e_stop="78207" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78206" i_stop="77462" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="77461" e_stop="76948" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78393" stop="78207"/>
              <exon start="77461" stop="76948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAATTTTCATGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTC : GATGTAATTTTGGGTATGACTTGGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGATGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTACGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTATCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCAGCCAGATAGGGATATTGACTTCTGTATTGATCTTGGACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  F  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  S  S  G  Y  G  K  I  L  P  R  S  G  R  F   : R  C  N  F  G  Y  D  L  A  F  S  T  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  T  Y  H  L  F  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  S  *  V  F  G  C  V  P  C  R  S  S  W  Y  A  A  R  *  G  Y  *  L  L  Y  *  S  W  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  N  F  V  C  E  E  E  G  W  E  F  S  N  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  N  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  M  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  I  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  Q  P  D  R  D  I  D  F  C  I  D  L  G  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  I  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  I  F  M  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  K  *  R  L  R  Q  N  P  S  K  K  W  *  I  S :   M  *  F  W  V  *  L  G  F  L  H  N  L  R  S  W  I  V  M  L  K  R  *  C  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  Y  V  S  S  L  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  S  K  Y  L  R  L  S  R  F  R  W  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  S  Q  I  G  I  L  T  S  V  L  I  L  D  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  Q  F  C  L  *  R  R  R  M  G  V  F  E  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78392" stop="78207"/>
                    <exon start="77461" stop="76949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEANFHALSRYATQLCFSPQERIRHFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVMLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTIQVPSIESVSVVREFLDVFPADLPGMQPDRDIDFCIDLGPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPILFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="79015" PGL_stop="78462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79015" e_stop="78462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="79015" e_stop="78462" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79015" stop="78462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCTACCGACTGAGGAAGTAATAAGAGAAGGGAAGGATGGGGAGAATGAACAAGTGCAAAATGAGAAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGAGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATGTCCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCCTGAACTTGTCAGCAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGTGGTCACATGTTGAGTGTCAAACAACAGAGGCACCACCTATGACTTGAGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  E  G  W  G  E  *  T  S  A  K  *  E  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  P  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  C  Q  Q  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  V  V  T  C  *  V  S  N  N  R  G  T  T  Y  D  L  S  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  L  P  T  E  E  V  I  R  E  G  K  D  G  E  N  E  Q  V  Q  N  E  K  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  R  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  L  E  V  Q  H  A  A  T  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  P  E  L  V  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  W  S  H  V  E  C  Q  T  T  E  A  P  P  M  T  *  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  Y  R  L  R  K  *  *  E  K  G  R  M  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  E  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  L  W  R  Y  N  M  R  L  L  R  L  P  A  W  M  S  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  L  N  L  S  A  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  K  Q  Q  R  H  H  L  *  L  E  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79014" stop="78472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPLPTEEVIREGKDGENEQVQNEKLPPQPTPEMINQVLAYLRGLSDQGQTPPVFSAPAPQALEVQHAATAAPRMDVPLEIGTFPRLTTGPIMTNDQPELVSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWWSHVECQTTEAPPMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="88733" PGL_stop="89442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88733" e_stop="89442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="88733" e_stop="89442" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88733" stop="89442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCGATATACTATATTTCATTTATGTCATAAGTTTTCTTTAATTTCTTAAATCATGCGTCCAATTATTTAAAATAGGATATGTACGGGGTACTATTGTATGTGGAGATAAATAGTTGGACTAATGACGCATGAGTTCGCCCCAAATCTAAAGTGATCCTATGACTTTCTTTACGTCATACTTCATTCGTTTCAAAATAAGTGTTTTATTTTTTTTAGATCTAATTTGATCACTATTTTTTAAAAAATTAATTGGAATAGATCAACACAAAATTAGTTTTAAAATTTAAATTTAGATATTCAACAACTATTACAAAATTTACTACAAGTTACGATTATTCTCATGTGTCGATATAATGAAAAAGGCATTATTAAATGAAAATCGACTTTCACATATCATATCGAGAAGTACTAATAGAAATGACAGATAATTTGAAGCGAATGATTTGAGAAATACCTTAGATGACATTGCACCATATACTTATGGTTGATAAATGAAAATAATAAGTGTATTTTTTCTCTTACATATCTCTTCAATATCTTAGTGTTTTGTTGTTACATAAATATATATAGCATGAGAAGCATAAGGCAAAGAAGGATCCAGAGAATGCACACAAACACAAGATAAAACAAGAGATAGCAGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAAAAAGATGCCAAGAA</gDNA_template>
            <first_frame> S  S  I  Y  Y  I  S  F  M  S  *  V  F  F  N  F  L  N  H  A  S  N  Y  L  K  *  D  M  Y  G  V  L  L  Y  V  E  I  N  S  W  T  N  D  A  *  V  R  P  K  S  K  V  I  L  *  L  S  L  R  H  T  S  F  V  S  K  *  V  F  Y  F  F  *  I  *  F  D  H  Y  F  L  K  N  *  L  E  *  I  N  T  K  L  V  L  K  F  K  F  R  Y  S  T  T  I  T  K  F  T  T  S  Y  D  Y  S  H  V  S  I  *  *  K  R  H  Y  *  M  K  I  D  F  H  I  S  Y  R  E  V  L  I  E  M  T  D  N  L  K  R  M  I  *  E  I  P  *  M  T  L  H  H  I  L  M  V  D  K  *  K  *  *  V  Y  F  F  S  Y  I  S  L  Q  Y  L  S  V  L  L  L  H  K  Y  I  *  H  E  K  H  K  A  K  K  D  P  E  N  A  H  K  H  K  I  K  Q  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  D  A  K   </first_frame>
            <second_frame>  H  R  Y  T  I  F  H  L  C  H  K  F  S  L  I  S  *  I  M  R  P  I  I  *  N  R  I  C  T  G  Y  Y  C  M  W  R  *  I  V  G  L  M  T  H  E  F  A  P  N  L  K  *  S  Y  D  F  L  Y  V  I  L  H  S  F  Q  N  K  C  F  I  F  F  R  S  N  L  I  T  I  F  *  K  I  N  W  N  R  S  T  Q  N  *  F  *  N  L  N  L  D  I  Q  Q  L  L  Q  N  L  L  Q  V  T  I  I  L  M  C  R  Y  N  E  K  G  I  I  K  *  K  S  T  F  T  Y  H  I  E  K  Y  *  *  K  *  Q  I  I  *  S  E  *  F  E  K  Y  L  R  *  H  C  T  I  Y  L  W  L  I  N  E  N  N  K  C  I  F  S  L  T  Y  L  F  N  I  L  V  F  C  C  Y  I  N  I  Y  S  M  R  S  I  R  Q  R  R  I  Q  R  M  H  T  N  T  R  *  N  K  R  *  Q  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  K  K  M  P  R  </second_frame>
            <third_frame>   I  D  I  L  Y  F  I  Y  V  I  S  F  L  *  F  L  K  S  C  V  Q  L  F  K  I  G  Y  V  R  G  T  I  V  C  G  D  K  *  L  D  *  *  R  M  S  S  P  Q  I  *  S  D  P  M  T  F  F  T  S  Y  F  I  R  F  K  I  S  V  L  F  F  L  D  L  I  *  S  L  F  F  K  K  L  I  G  I  D  Q  H  K  I  S  F  K  I  *  I  *  I  F  N  N  Y  Y  K  I  Y  Y  K  L  R  L  F  S  C  V  D  I  M  K  K  A  L  L  N  E  N  R  L  S  H  I  I  S  R  S  T  N  R  N  D  R  *  F  E  A  N  D  L  R  N  T  L  D  D  I  A  P  Y  T  Y  G  *  *  M  K  I  I  S  V  F  F  L  L  H  I  S  S  I  S  *  C  F  V  V  T  *  I  Y  I  A  *  E  A  *  G  K  E  G  S  R  E  C  T  Q  T  Q  D  K  T  R  D  S  S  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  K  R  C  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0094K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="96777" PGL_stop="98167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96777" e_stop="98167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="96777" e_stop="98167" e_length="1391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96777" stop="98167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATCATATTTGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGGTACGTTGATATAATCTTACCTTATATATATAAACGTTATTATCGATTATTTATACAAATCATTTTCTTTTATTCAAATTACGATCAAAATCATTTAAGAGTTTTTCTACCGGGAACATCCGATTAGTCAAGATTTTCATCGGAGAGTTTGAATATATTGATTCCTAATAAAATGATTTTATTTCCTCGATTCATGCCAAAAATCTATAATTAAGGACGGAAGAGTAGCCAATTATTTATTTAATATAATTTAATTCCTTTTTTCCTTTTAAATTTTTAGTTTAATTTCATAATATATGTAAGGAAGGGGTGTGAAAAATTTAAAGAAGATAAACAGAGAAGGGATGGTTTTATTTGCGAGTAAAAGAGTTTATTTTCTATCTAAACACGTTTACACTAATTTCACATTAAGTTCACCTAATTATAGTAACTCTCTATCATCTATACAAAAATAGCGTAATAATAAAAATTGTTCTACAACTTCTAACTCTTCAATTAAAAAAAAAACAACATATAGAATATCGATGTTGAAATTACTCAGTACTTCATTCGTTTCAAAATAAGTGTTGTTGTTTGTACGACATGATCACAACTGATGAAAATATGTCACACGAATTAGAACAGAGTCTCTGTTATTAATTACTTTTTCCCTCTTTTGTTGGTGATAATAAACATAAAACAAAATTAGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGA</gDNA_template>
            <first_frame> T  R  S  Y  L  Y  Q  T  P  Y  T  F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L  G  T  L  I  *  S  Y  L  I  Y  I  N  V  I  I  D  Y  L  Y  K  S  F  S  F  I  Q  I  T  I  K  I  I  *  E  F  F  Y  R  E  H  P  I  S  Q  D  F  H  R  R  V  *  I  Y  *  F  L  I  K  *  F  Y  F  L  D  S  C  Q  K  S  I  I  K  D  G  R  V  A  N  Y  L  F  N  I  I  *  F  L  F  S  F  *  I  F  S  L  I  S  *  Y  M  *  G  R  G  V  K  N  L  K  K  I  N  R  E  G  M  V  L  F  A  S  K  R  V  Y  F  L  S  K  H  V  Y  T  N  F  T  L  S  S  P  N  Y  S  N  S  L  S  S  I  Q  K  *  R  N  N  K  N  C  S  T  T  S  N  S  S  I  K  K  K  T  T  Y  R  I  S  M  L  K  L  L  S  T  S  F  V  S  K  *  V  L  L  F  V  R  H  D  H  N  *  *  K  Y  V  T  R  I  R  T  E  S  L  L  L  I  T  F  S  L  F  C  W  *  *  *  T  *  N  K  I  S  M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  F  L  A  I  F  C  *  I  T  L  *  N  V  A  F  L  S  G  V  I  N  N  E  F  S  S   </first_frame>
            <second_frame>  Q  D  H  I  C  I  K  H  H  T  L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  V  R  *  Y  N  L  T  L  Y  I  *  T  L  L  S  I  I  Y  T  N  H  F  L  L  F  K  L  R  S  K  S  F  K  S  F  S  T  G  N  I  R  L  V  K  I  F  I  G  E  F  E  Y  I  D  S  *  *  N  D  F  I  S  S  I  H  A  K  N  L  *  L  R  T  E  E  *  P  I  I  Y  L  I  *  F  N  S  F  F  P  F  K  F  L  V  *  F  H  N  I  C  K  E  G  V  *  K  I  *  R  R  *  T  E  K  G  W  F  Y  L  R  V  K  E  F  I  F  Y  L  N  T  F  T  L  I  S  H  *  V  H  L  I  I  V  T  L  Y  H  L  Y  K  N  S  V  I  I  K  I  V  L  Q  L  L  T  L  Q  L  K  K  K  Q  H  I  E  Y  R  C  *  N  Y  S  V  L  H  S  F  Q  N  K  C  C  C  L  Y  D  M  I  T  T  D  E  N  M  S  H  E  L  E  Q  S  L  C  Y  *  L  L  F  P  S  F  V  G  D  N  K  H  K  T  K  L  A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L  S  S  Q  S  S  V  E  L  P  C  K  M  L  L  F  *  V  V  *  *  I  M  S  F  L  V  </second_frame>
            <third_frame>   K  I  I  F  V  S  N  T  I  H  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  W  Y  V  D  I  I  L  P  Y  I  Y  K  R  Y  Y  R  L  F  I  Q  I  I  F  F  Y  S  N  Y  D  Q  N  H  L  R  V  F  L  P  G  T  S  D  *  S  R  F  S  S  E  S  L  N  I  L  I  P  N  K  M  I  L  F  P  R  F  M  P  K  I  Y  N  *  G  R  K  S  S  Q  L  F  I  *  Y  N  L  I  P  F  F  L  L  N  F  *  F  N  F  I  I  Y  V  R  K  G  C  E  K  F  K  E  D  K  Q  R  R  D  G  F  I  C  E  *  K  S  L  F  S  I  *  T  R  L  H  *  F  H  I  K  F  T  *  L  *  *  L  S  I  I  Y  T  K  I  A  *  *  *  K  L  F  Y  N  F  *  L  F  N  *  K  K  N  N  I  *  N  I  D  V  E  I  T  Q  Y  F  I  R  F  K  I  S  V  V  V  C  T  T  *  S  Q  L  M  K  I  C  H  T  N  *  N  R  V  S  V  I  N  Y  F  F  P  L  L  L  V  I  I  N  I  K  Q  N  *  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D  F  P  R  N  L  L  L  N  Y  L  V  K  C  C  F  F  K  W  C  N  K  *  *  V  F  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96827" stop="97120"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYCFRWRRRNTTTTTCSTTRTRRRRAPSTTKKKSNTINISSKSVNLALLLPVPTPWYVDIILPYIYKRYYRLFIQIIFFYSNYDQNHLRVFLPGTSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="97002"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHICIKHHTLSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96808" e_stop="96993"/>
            <exon e_start="97682" e_stop="98088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.952"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="96808" e_stop="96993" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96994" i_stop="97681" i_length="688"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="97682" e_stop="98088" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96808" stop="96993"/>
              <exon start="97682" stop="98088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGGAGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAACATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTG : CATGAGAAACATGAGGCAAAGAAAGATCCAGAACATGCACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAGATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAATTTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTTAAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTGTTTTGGACTT</gDNA_template>
            <first_frame> L  S  K  L  S  I  D  L  L  F  Q  M  E  E  E  K  H  H  H  H  H  L  F  H  H  K  D  K  A  E  E  G  P  V  D  Y  E  K  E  I  K  H  H  K  H  L  E  Q  I  G  K  L  G  T  V  A  A  G  A  Y  A  L  :  H  E  K  H  E  A  K  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  A  A  A  V  G  A  G  G  F  A  F  H  E  H  H  E  K  K  D  A  K  K  E  E  K  K  A  E  G  G  H  H  H  L  F  *  I  V  I  L  V  T  F  L  I  F  V  E  F  P  Y  L  V  *  V  L  C  H  L  I  I  Y  R  A  *  *  Q  *  I  *  C  D  I  I  N  G  S  S  *  K  K  R  A  K  V  K  I  Y  F  T  N  L  V  *  C  K  E  G  C  I  V  I  S  K  M  I  M  C  V  L  D   </first_frame>
            <second_frame>  F  L  N  Y  R  *  I  Y  C  F  R  W  R  R  R  N  T  T  T  T  T  C  S  T  T  R  T  R  R  R  R  A  P  S  T  T  K  K  K  S  N  T  I  N  I  S  S  K  S  V  N  L  A  L  L  L  P  V  P  T  P  C :   M  R  N  M  R  Q  R  K  I  Q  N  M  H  T  N  T  R  *  R  K  R  *  Q  Q  L  L  Q  L  G  Q  V  D  L  H  S  M  S  I  M  R  K  K  M  P  R  K  K  K  K  K  L  R  G  D  T  T  I  S  S  K  L  L  F  *  L  H  F  *  Y  S  W  N  F  H  I  W  Y  K  C  C  V  I  L  S  Y  I  V  H  N  N  N  K  F  S  V  I  L  *  M  D  R  V  K  K  K  E  Q  K  S  K  Y  I  L  P  I  S  C  D  V  K  K  D  V  L  *  F  P  K  *  S  C  V  F  W  T  </second_frame>
            <third_frame>   F  *  I  I  D  R  F  I  V  S  D  G  G  G  E  T  P  P  P  P  P  V  P  P  Q  G  Q  G  G  G  G  P  R  R  L  R  K  R  N  Q  T  P  *  T  S  R  A  N  R  *  T  W  H  C  C  C  R  C  L  R  L   : A  *  E  T  *  G  K  E  R  S  R  T  C  T  Q  T  Q  D  R  G  R  D  S  S  S  C  C  S  W  G  R  W  I  C  I  P  *  A  S  *  E  K  R  C  Q  E  R  R  K  K  S  *  G  G  T  P  P  S  L  L  N  C  Y  F  S  Y  I  F  N  I  R  G  I  S  I  F  G  I  S  V  V  S  S  Y  H  I  S  C  I  I  T  I  N  L  V  *  Y  Y  K  W  I  E  L  K  K  K  S  K  S  Q  N  I  F  Y  Q  S  R  V  M  *  R  R  M  Y  C  D  F  Q  N  D  H  V  C  F  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96808" stop="96993"/>
                    <exon start="97682" stop="97861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSKLSIDLLFQMEEEKHHHHHLFHHKDKAEEGPVDYEKEIKHHKHLEQIGKLGTVAAGAYALHEKHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAFHEHHEKKDAKKEEKKAEGGHHHLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="103724" PGL_stop="104911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103724" e_stop="104497"/>
            <exon e_start="104609" e_stop="104791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103724" e_stop="104497" e_length="774"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104498" i_stop="104608" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104609" e_stop="104791" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103724" stop="104497"/>
              <exon start="104609" stop="104791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCAAAGTATTTTGTTCTACTACTACATTTTTTTCATACACAATTGTCACCAAAAAACATCATGGCTGAAGAAAAGAAACATCACTTTGGTGGTCTCTTTAACCACCACAAGAACAAAGAGGAAGACACCCCCATTGAGAAAACTACATATGAAGAAACAACCTATGAAGACAGTGAAAAAACTAGCACTTATGGAGACAACACATATGGTGAAAAAACTAGTTATGGTGATGATACATATGGCAAAAAAACTACCACATATGGAGATGACAACAAATATAGTGAGAAAACTAGTTATGGTGATGATACATATGACGAAAAAACTAACACATATGGAGATGAAAACAAATATGGTGAGAAAACTAGTTACAGTGAGGGAGATGACAACAAATATGGTGAGAAAACTAGTTATGGTGGTGATACATATGGCGAAAAACCTACCTCCTACGGAGGAGATAATACATATGGTGAGAAAACAAGTTATGGTGGGGGAGATGAAAACAAGTATGGTGAGAAAACTAGTTATGGAGAGAAAGCTAGTTATGGTGGAGGAGATGACAACAAATATGGTGAGAAAACAAGTTATGGTAATGAGGAAGGTGGCTATGGTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTG : CATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAA</gDNA_template>
            <first_frame> I  P  K  Y  F  V  L  L  L  H  F  F  H  T  Q  L  S  P  K  N  I  M  A  E  E  K  K  H  H  F  G  G  L  F  N  H  H  K  N  K  E  E  D  T  P  I  E  K  T  T  Y  E  E  T  T  Y  E  D  S  E  K  T  S  T  Y  G  D  N  T  Y  G  E  K  T  S  Y  G  D  D  T  Y  G  K  K  T  T  T  Y  G  D  D  N  K  Y  S  E  K  T  S  Y  G  D  D  T  Y  D  E  K  T  N  T  Y  G  D  E  N  K  Y  G  E  K  T  S  Y  S  E  G  D  D  N  K  Y  G  E  K  T  S  Y  G  G  D  T  Y  G  E  K  P  T  S  Y  G  G  D  N  T  Y  G  E  K  T  S  Y  G  G  G  D  E  N  K  Y  G  E  K  T  S  Y  G  E  K  A  S  Y  G  G  G  D  D  N  K  Y  G  E  K  T  S  Y  G  N  E  E  G  G  Y  G  G  G  V  G  A  Y  S  S  E  T  T  T  N  Y  E  E  N  D  D  S  G  T  K  T  S  E  D  Y  K  E  E  K  K  H  H  K  H  L  E  E  L  G  G  L  G  A  V  A  A  G  A  F  A  L  :  H  E  K  H  K  A  E  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  E  A  K  E  E  E  E  E  A  E  G  K  K  K  H  H  F  F  * </first_frame>
            <second_frame>  S  Q  S  I  L  F  Y  Y  Y  I  F  F  I  H  N  C  H  Q  K  T  S  W  L  K  K  R  N  I  T  L  V  V  S  L  T  T  T  R  T  K  R  K  T  P  P  L  R  K  L  H  M  K  K  Q  P  M  K  T  V  K  K  L  A  L  M  E  T  T  H  M  V  K  K  L  V  M  V  M  I  H  M  A  K  K  L  P  H  M  E  M  T  T  N  I  V  R  K  L  V  M  V  M  I  H  M  T  K  K  L  T  H  M  E  M  K  T  N  M  V  R  K  L  V  T  V  R  E  M  T  T  N  M  V  R  K  L  V  M  V  V  I  H  M  A  K  N  L  P  P  T  E  E  I  I  H  M  V  R  K  Q  V  M  V  G  E  M  K  T  S  M  V  R  K  L  V  M  E  R  K  L  V  M  V  E  E  M  T  T  N  M  V  R  K  Q  V  M  V  M  R  K  V  A  M  V  E  E  L  V  P  T  H  L  R  L  L  L  I  M  K  R  M  M  I  V  E  P  K  L  L  R  I  T  R  K  R  R  N  I  T  S  I  L  K  N  L  G  D  L  E  L  L  L  L  V  P  L  L  C :   M  R  S  T  R  Q  R  K  I  Q  S  M  H  T  S  T  R  *  R  K  R  *  P  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  R  K  K  Q  K  K  K  R  R  K  L  R  E  R  R  S  I  I  S  S   </second_frame>
            <third_frame>   P  K  V  F  C  S  T  T  T  F  F  S  Y  T  I  V  T  K  K  H  H  G  *  R  K  E  T  S  L  W  W  S  L  *  P  P  Q  E  Q  R  G  R  H  P  H  *  E  N  Y  I  *  R  N  N  L  *  R  Q  *  K  N  *  H  L  W  R  Q  H  I  W  *  K  N  *  L  W  *  *  Y  I  W  Q  K  N  Y  H  I  W  R  *  Q  Q  I  *  *  E  N  *  L  W  *  *  Y  I  *  R  K  N  *  H  I  W  R  *  K  Q  I  W  *  E  N  *  L  Q  *  G  R  *  Q  Q  I  W  *  E  N  *  L  W  W  *  Y  I  W  R  K  T  Y  L  L  R  R  R  *  Y  I  W  *  E  N  K  L  W  W  G  R  *  K  Q  V  W  *  E  N  *  L  W  R  E  S  *  L  W  W  R  R  *  Q  Q  I  W  *  E  N  K  L  W  *  *  G  R  W  L  W  W  R  S  W  C  L  L  I  *  D  Y  Y  *  L  *  R  E  *  *  *  W  N  Q  N  F  *  G  L  Q  G  R  E  E  T  S  Q  A  S  *  R  T  W  G  T  W  S  C  C  C  W  C  L  C  F   : A  *  E  A  Q  G  R  E  R  S  R  A  C  T  Q  A  Q  D  R  G  R  D  S  R  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  E  R  S  K  R  R  R  G  G  S  *  G  K  E  E  A  S  F  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103724" stop="104497"/>
                    <exon start="104609" stop="104791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPKYFVLLLHFFHTQLSPKNIMAEEKKHHFGGLFNHHKNKEEDTPIEKTTYEETTYEDSEKTSTYGDNTYGEKTSYGDDTYGKKTTTYGDDNKYSEKTSYGDDTYDEKTNTYGDENKYGEKTSYSEGDDNKYGEKTSYGGDTYGEKPTSYGGDNTYGEKTSYGGGDENKYGEKTSYGEKASYGGGDDNKYGEKTSYGNEEGGYGGGVGAYSSETTTNYEENDDSGTKTSEDYKEEKKHHKHLEELGGLGAVAAGAFALHEKHKAEKDPEHAHKHKIEEEIAAVAAVGAGGFAFHEHHQKKEAKEEEEEAEGKKKHHFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104334" e_stop="104911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="104334" e_stop="104911" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104334" stop="104911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAGGAGTTGGTGCCTACTCATCTGAGACTACTACTAATTATGAAGAGAATGATGATAGTGGAACCAAAACTTCTGAGGATTACAAGGAAGAGAAGAAACATCACAAGCATCTTGAAGAACTTGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGGTAAATATTCTTTAATTCTAACTTTCCACGTGACAATGCATATGTATGAGATTACAAGATTAAATGACATTTTCCTACGTTAATCTTCGATATGGTATATGAAAATTTCAGCATGAGAAGCACAAGGCAGAGAAAGATCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATAGCCGCAGTAGCTGCAGTTGGTGCTGGTGGATTTGCATTCCATGAACATCATCAGAAGAAAGAAGCAAAAGAAGAAGAGGAGGAAGCTGAGGGAAAGAAGAAGCATCATTTCTTCTAATGAATTCTCTTGTCATAACATATAGTATTTGTTGTGTGCTGATCAATCTATCCTTTAATTAATACGTACTCAGCATGCACCTAAATAATTTGTATGTGTGTTACACTACTCTTGTCTTTG</gDNA_template>
            <first_frame> V  E  E  L  V  P  T  H  L  R  L  L  L  I  M  K  R  M  M  I  V  E  P  K  L  L  R  I  T  R  K  R  R  N  I  T  S  I  L  K  N  L  G  D  L  E  L  L  L  L  V  P  L  L  W  *  I  F  F  N  S  N  F  P  R  D  N  A  Y  V  *  D  Y  K  I  K  *  H  F  P  T  L  I  F  D  M  V  Y  E  N  F  S  M  R  S  T  R  Q  R  K  I  Q  S  M  H  T  S  T  R  *  R  K  R  *  P  Q  *  L  Q  L  V  L  V  D  L  H  S  M  N  I  I  R  R  K  K  Q  K  K  K  R  R  K  L  R  E  R  R  S  I  I  S  S  N  E  F  S  C  H  N  I  *  Y  L  L  C  A  D  Q  S  I  L  *  L  I  R  T  Q  H  A  P  K  *  F  V  C  V  L  H  Y  S  C  L   </first_frame>
            <second_frame>  W  R  S  W  C  L  L  I  *  D  Y  Y  *  L  *  R  E  *  *  *  W  N  Q  N  F  *  G  L  Q  G  R  E  E  T  S  Q  A  S  *  R  T  W  G  T  W  S  C  C  C  W  C  L  C  F  G  K  Y  S  L  I  L  T  F  H  V  T  M  H  M  Y  E  I  T  R  L  N  D  I  F  L  R  *  S  S  I  W  Y  M  K  I  S  A  *  E  A  Q  G  R  E  R  S  R  A  C  T  Q  A  Q  D  R  G  R  D  S  R  S  S  C  S  W  C  W  W  I  C  I  P  *  T  S  S  E  E  R  S  K  R  R  R  G  G  S  *  G  K  E  E  A  S  F  L  L  M  N  S  L  V  I  T  Y  S  I  C  C  V  L  I  N  L  S  F  N  *  Y  V  L  S  M  H  L  N  N  L  Y  V  C  Y  T  T  L  V  F  </second_frame>
            <third_frame>   G  G  V  G  A  Y  S  S  E  T  T  T  N  Y  E  E  N  D  D  S  G  T  K  T  S  E  D  Y  K  E  E  K  K  H  H  K  H  L  E  E  L  G  G  L  G  A  V  A  A  G  A  F  A  L  V  N  I  L  *  F  *  L  S  T  *  Q  C  I  C  M  R  L  Q  D  *  M  T  F  S  Y  V  N  L  R  Y  G  I  *  K  F  Q  H  E  K  H  K  A  E  K  D  P  E  H  A  H  K  H  K  I  E  E  E  I  A  A  V  A  A  V  G  A  G  G  F  A  F  H  E  H  H  Q  K  K  E  A  K  E  E  E  E  E  A  E  G  K  K  K  H  H  F  F  *  *  I  L  L  S  *  H  I  V  F  V  V  C  *  S  I  Y  P  L  I  N  T  Y  S  A  C  T  *  I  I  C  M  C  V  T  L  L  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0094K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="104304" PGL_stop="103744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104304" e_stop="104096"/>
            <exon e_start="104024" e_stop="103744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="104304" e_stop="104096" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104095" i_stop="104025" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="104024" e_stop="103744" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104304" stop="104096"/>
              <exon start="104024" stop="103744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338654" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTCTCACCATATTTGTTGTCATCTCCTCCACCATAACTAGCTTTCTCTCCATAACTAGTTTTCTCACCATACTTGTTTTCATCTCCCCCACCATAACTTGTTTTCTCACCATATGTATTATCTCCTCCGTAGGAGGTAGGTTTTTCGCCATATGTATCACCACCATAACTAGTTTTCTCACCATATTTGTTGTCATCTCCCTCACT : CATAACTAGTTTTCTCACTATATTTGTTGTCATCTCCATATGTGGTAGTTTTTTTGCCATATGTATCATCACCATAACTAGTTTTTTCACCATATGTGTTGTCTCCATAAGTGCTAGTTTTTTCACTGTCTTCATAGGTTGTTTCTTCATATGTAGTTTTCTCAATGGGGGTGTCTTCCTCTTTGTTCTTGTGGTGGTTAAAGAGACCACCAAAGTGATGTTTCTTTTCTTCAGCCATGATGTTTTTTGGTGACAATTGTGTATGAAAAAAATGTAGTAGT</gDNA_template>
            <first_frame> V  F  S  P  Y  L  L  S  S  P  P  P  *  L  A  F  S  P  *  L  V  F  S  P  Y  L  F  S  S  P  P  P  *  L  V  F  S  P  Y  V  L  S  P  P  *  E  V  G  F  S  P  Y  V  S  P  P  *  L  V  F  S  P  Y  L  L  S  S  P  S  L :   I  T  S  F  L  T  I  F  V  V  I  S  I  C  G  S  F  F  A  I  C  I  I  T  I  T  S  F  F  T  I  C  V  V  S  I  S  A  S  F  F  T  V  F  I  G  C  F  F  I  C  S  F  L  N  G  G  V  F  L  F  V  L  V  V  V  K  E  T  T  K  V  M  F  L  F  F  S  H  D  V  F  W  *  Q  L  C  M  K  K  M  *  *  </first_frame>
            <second_frame>  F  S  H  H  I  C  C  H  L  L  H  H  N  *  L  S  L  H  N  *  F  S  H  H  T  C  F  H  L  P  H  H  N  L  F  S  H  H  M  Y  Y  L  L  R  R  R  *  V  F  R  H  M  Y  H  H  H  N  *  F  S  H  H  I  C  C  H  L  P  H   : S  *  L  V  F  S  L  Y  L  L  S  S  P  Y  V  V  V  F  L  P  Y  V  S  S  P  *  L  V  F  S  P  Y  V  L  S  P  *  V  L  V  F  S  L  S  S  *  V  V  S  S  Y  V  V  F  S  M  G  V  S  S  S  L  F  L  W  W  L  K  R  P  P  K  *  C  F  F  S  S  A  M  M  F  F  G  D  N  C  V  *  K  K  C  S  S </second_frame>
            <third_frame>   F  L  T  I  F  V  V  I  S  S  T  I  T  S  F  L  S  I  T  S  F  L  T  I  L  V  F  I  S  P  T  I  T  C  F  L  T  I  C  I  I  S  S  V  G  G  R  F  F  A  I  C  I  T  T  I  T  S  F  L  T  I  F  V  V  I  S  L  T  :  H  N  *  F  S  H  Y  I  C  C  H  L  H  M  W  *  F  F  C  H  M  Y  H  H  H  N  *  F  F  H  H  M  C  C  L  H  K  C  *  F  F  H  C  L  H  R  L  F  L  H  M  *  F  S  Q  W  G  C  L  P  L  C  S  C  G  G  *  R  D  H  Q  S  D  V  S  F  L  Q  P  *  C  F  L  V  T  I  V  Y  E  K  N  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104133" stop="104096"/>
                    <exon start="104024" stop="103772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFSPYLLSSPSLITSFLTIFVVISICGSFFAICIITITSFFTICVVSISASFFTVFIGCFFICSFLNGGVFLFVLVVVKETTKVMFLFFSHDVFW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0094K06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104302" stop="104096"/>
                    <exon start="104024" stop="104016"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLTIFVVISSTITSFLSITSFLTILVFISPTITCFLTICIISSVGGRFFAICITTITSFLTIFVVISLTHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 74 chains have been computed
$ 
$ memory statistics:
$ 43416 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2067 bytes was the average size of a spliced alignment
$ 23096 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1539 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 98 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:46:31
-->
