<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:25:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7068" ref_strand="+" ref_description="SGN-M7068 C2_At1g76280 [cosii_markers]">
      <seq>gcagaaaaacattaagtgcatctgttgtgaagcttttgaggtggtccttcaatgatgttatgcatgcttgtgcacaagttcaaaattgtgatttggctgaacagttgatgttacagatgcaaactcttggtttgcaaccatcagggagtacatatgatggcttcattagggcaattgctaccacaagaggctttagtgatggagtggaagtgctaaaggttatgaaagagaaaaatattaagcctcatgattcaactcttgctgttttagcagtcatgtgcagcagagagttggaactcaatctagcagaggctttcttggctgagatgtccaaaatccataatcctcgtccttataatgcttttcttgaagcatgtgatgttctggatcggcccgaacgagcagtccagatattggctaagatgaaaaggttgaatcttcagccaaatatcaggacatatgagttgctattctcactgtttggtaatgtaaatgcaccttatgaagagggcaacatgctgtcacaagtggatgttgctaaaaggataaatgctatagaaatggacatgatgaggaatggcattccgcacagtcatctgtcgttgaggaatgtgttgaaagcgcttggaacagaagggatggtaaaggagctgattcaatatttacgtgctgcagagaatcggttttctcgttatgacacctatatgataacacctgtctataatacagctttacactcccttattgaggctaaagagagtaaagtggcaacacagatattcaaatcaatggtgtcttctggtgttacacctgatgctgcaacatataatatcatgattgacggctgtagcattgttggatgtttcagatctgcacttaccctgatctctatgatgttccgcactggtttcaaccctcaagcagtgactttaactggcctgttaaagatattgttgagatctgaggactttgatggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="7040" stop="1956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6740" g_stop="6625" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6394" g_stop="6299" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6193" g_stop="6020" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="386" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5478" g_stop="5251" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="614" r_length="228" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5250" i_stop="3316" i_length="1935">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3315" g_stop="3172" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="758" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3171" i_stop="3079" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3078" g_stop="2890" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="947" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2889" i_stop="2289" i_length="601">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2288" g_stop="2256" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="980" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M7068" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>980</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6740" e_stop="6625"/>
          <exon e_start="6394" e_stop="6299"/>
          <exon e_start="6193" e_stop="6020"/>
          <exon e_start="5478" e_stop="5251"/>
          <exon e_start="3315" e_stop="3172"/>
          <exon e_start="3078" e_stop="2890"/>
          <exon e_start="2288" e_stop="2256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAGGTATTGCTACAATATCCAGTTGCTATGATGTCCCCATCTGTCTAATGTTAGAAAATTTATGCAGGATCGGAAGGATAGTCCTTAGGTCCATATGACTAGGCACATATCATTGTTTTACGCAAAAATAAGCCAATAGCAATTGTCTCAACTTTCTTTCTCAAAAAAAAATTGTCTTAATTTCACAAGGTAATTTCCTGTCTGATTTTCACTAAGCTATCTCTTTTCTTTAGATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTGGTAATATATTATTAGTTTCATGGGATCTTCTTTTTTTTCTTCCAAGAGTAGTACTTGCTTTTGGTTTTCTCATTTTCACATTATGTAATTTGTCTAATTTTGCAGCTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTGGTAAGACAGTATATAATTATTTCAAAAACAACAATATATTTGAAAACATCTGATCATCACTGGTCCCATACTTAGATCAGTACAATAAGAACTGGCAAAGGTTTGACTGAGTTATGTAGGTTCCTGGATGGTTCAATAAGCCAATCAGCTTGTCCAGACTTTTCTTTTTTCTTGCAAGTCAAACCTATCCTTCTAAGCATATTCTTGCTTCTTTAGATCTTGATATTACCACCGTATATTTTGCTCTCTCATGAGATGTTGTAAGGAATATGAGGATTTTGAGCTAGCTCTCATCAAAAGAGTTTTACGCGTCAAGCTAAAAAGTTGCAACTACCCTCTGACTTAAATCATTTTAGGATTTAAATATGGAGAACACTCTCTTTTTGTAACTAGGCCAAGATATATTGCTTTATGATCATTTAACTTCTGCAATATTCAGCATCGTTGTTTTTTCAGCGTCTTTCGATAGAATTGCCCATCTTGTCGATCGTATTATACTGATATGTCCAGTTTGTGATTCTTGTACATATTAATATTGTAGGATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTGGTAATGACTTCTCAACTAAGACAAATTTAGATATTGATTTATTTGAGTACTATTTTACTTCCTAAGCAAGTAGAGATGATGATCAGCCCAATATCTGCACCACTAATTGAATGTGTGATGTCTTTAGAGAGATGGTCATTAAGAGTCTTTTTTAACTTTGATGGTGAAATCTTTACGATGATTAAAAGAGATACTAAATGTCTTTAGAAAGATGGTCATTTAAGAGTCTTTCAGTTAAATTTGATGGTGAAATCTTTACGATGATTAAAAGAGATACTAATGAATGTTATCATTTTTGGTGATGGTGCATAAATTTATGTGTTCATCCTAGCTTTGTGATTCCCAAGTTCATAAACAGGCTGCAACTCGACATTGCCTCTATTAAAATGAGGACACTAGCAGATATTTCTCTGTATGTATCAAAATTATCCACAGCATACTTGTAAACTTCACTCCATATGACTTAAAAAGTGTTCCTGGTATATCAAACAAGTCAATTCTTGGTTCACCTGTCTGGAAGTGTTGAATGCTATAAGTAGTTTCATGACTTATCTGTCTGGAAGTGTTGAATGTTGTAAGTCGTCTCTGGGTTTATCTGTCTGGAAGTGTTGAATGCTGTAAGTAGTTTCATGACTTATCTGTCTGGAAGTGTTGAATGTTGTAAGTCGTCTCTGGGTTTATCTGTCTGGAAGTGTTGAATGCTGTAGTCTTATTTATGCATGCTTCATGATTCTTATAGCTGGAGGCTATCTATTGAGGAAGCAATGAGAGAAAAATGAACTTCTGCCTCCATCATGAACCACACTTTGGATGTACTAGCTCCGTCAACTTTTATTTGTCATGTTGCGTTTTTCGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAGATTATATTAATTCGACATTTTAACAAAAAAATTTAGATATTCAAAAACTATACGAAAAGTACTATAAATTGCAATTTTTTGCATATCAATATAATGAAAAAATACATCGTAAAATGTTAGTCAAAATTTTTATAGTTTGACTCTAAAAAAGGAAACCATGACAATTAAAAGTGGACAGAGGGAGTATATATCCTTACAGATTGCATATTGGACAGGAGCAACTACTCCTGGTTGCTGTTATGTGCACCTTTTGATTTGGCATAGCTAAATAACTTGCAAGGAAAGGTACACTTTGGGTCACTTTGCTAAAACAAATGTTGTCTGATGACTAAATTTAGTATGGTCTGAGTCACCGAACTAAAAATATTGGAGATGTAATAGTTTATTCAAGCTTATGTCTACTATGCTAATAGCTTTTTATTTTTATTTTATGTGCATTTCATAAAAGCATTTCTCTACTAATTTTTTGTTAAGTTTTTATTAAAATATTTCATACTATTGTCAAATATTGTATGTGTTTGTGTTTAAATATCTTTTCGATATGGTAAGCCTCACCCTCCTCCAAATCCATCTACACAGGAGACCAACAGTGTTTTTTTCACACTTTGCTCCCTTGGTGACTAGAAACCCCTCAATCTCATGGTTAAGATGGAAGACCCTTACCAGTGGGCTATCCGACTTTCCACCATTTAGATATTAGTTTATCATTTATTGAAACATGTGATGTAACATCTTAATATTTCACCAATTTAAGATTCAGTAATCAGTCAAGGTCTTCTTACTTAAGATTCGTAAAGCATTTTAAGTGCCACTTAATGTTTGAAGTAGTTTCTCTTTCCCTTATCAATACATCTAATGTCTGAAATTCAGTTAAAATCCTGAATTGTTTTATCAATAGCTCCTTAAGTTGCAATTTTTTTTTTCTACTGCAGGATTCTCTACAATTTTGTGCCCCAATATTTAAGGGGGCTTAAGGGCCAGTTATAATATTGATGCAATGCTTCAGTATAATATCCATGTCTTTTTACTCTTCTATATTTTCCAGTTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAGGTAATCAACCTAGGGTTCTAGTGTATAAGATCCATTTAATAGTTATATTGGTTATTTTTCATCTGCTGACTAAGTCTATTTTTTTCTTTTCAGAGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAGGTATTAGTTTAGCCTTGTTAAGCTATTCTCACTAATCTGGAAGCTGGATCATTAGAAAAATAAAAAGTAAACTTGCACAAACTTAAGCCTAACCAAGCCTTCTTTATTTTGTTAAAAGGGCTTTTCATGAAGTTGACAGTATGTGTTTTCTATCACTTATTCTGCTAACTTTTAACTATTTAGAAACTTTGCCAAGAAAATCAGTCAAATGATTTAGTAAACCTTGAAACCCAAAATCACCACAAGTCCATAACTAGTTGTGCTGCAACAATTGGGTTTGGATGATACTTCATTTAGCTGGAAGGGGCTTTCTTTGGATGAAAATAATTGTCATTGGTTGGGACAGAATGCCTTGCCACAAGTATCACTTATATTGCCTTTAGTGGTACCTTGGATTTCAACTTTTGGTGAATAAAAAGTGTTGTCTTTCTTCAGGTGAATGTACTACAAGAACTGTAGATGGCTTATCCTAATTTCATGGAAGCATAGTTATTGTTCAACAATTTATCCATCCCCCCCTTCCCCTTCCGCTGTGACTATATAGATATGCAAATGGTACCCACATATATTCCAACTGAAACTGAAATCTCTTCTGCTGTAGATATTGTTGAGATCTGAGGACTTTGATGGAGCA</genome_strand>
        <mrna_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG......................................................................................................................................................................................................................................ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGATGGAGTGGAAGTG.........................................................................................................CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGCTGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGCCCGAACGAGCAGTCCAGATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAG.............................................................................................AGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTTGAGATCTGAGGACTTTGATGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1890" ref_strand="+" ref_description="SGN-M1890 T1277 [cos_markers]">
      <seq>gcagaaaaacattaagtgcatctgttgtgaagcttttgaggtggtccttcaatgatgttatgcatgcttgtgcacaagttcaaaattgtgatttggctgaacagttgatgttacagatgcaaactcttggtttgcaaccatcagggagtacatatgatggcttcattagggcaattgctaccacaagaggctttagtgatggagtggaagtgctaaaggttatgaaagagaaaaatattaagcctcatgattcaactcttgctgttttagcagtcatgtgcagcagagagttggaactcaatctagcagaggctttcttggctgagatgtccaaaatccataatcctcgtccttataatgcttttcttgaagcatgtgatgttctggatcggcccgaacgagcagtccagatattggctaagatgaaaaggttgaatcttcagccaaatatcaggacatatgagttgctattctcactgtttggtaatgtaaatgcaccttatgaagagggcaacatgctgtcacaagtggatgttgctaaaaagataaatgctatagaaatggacatgatgaggaatggcattcaacacagtcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="7040" stop="4966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6740" g_stop="6625" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6394" g_stop="6299" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6193" g_stop="6020" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="386" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5478" g_stop="5266" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="599" r_length="213" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M1890" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6740" e_stop="6625"/>
          <exon e_start="6394" e_stop="6299"/>
          <exon e_start="6193" e_stop="6020"/>
          <exon e_start="5478" e_stop="5266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAGGTATTGCTACAATATCCAGTTGCTATGATGTCCCCATCTGTCTAATGTTAGAAAATTTATGCAGGATCGGAAGGATAGTCCTTAGGTCCATATGACTAGGCACATATCATTGTTTTACGCAAAAATAAGCCAATAGCAATTGTCTCAACTTTCTTTCTCAAAAAAAAATTGTCTTAATTTCACAAGGTAATTTCCTGTCTGATTTTCACTAAGCTATCTCTTTTCTTTAGATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTGGTAATATATTATTAGTTTCATGGGATCTTCTTTTTTTTCTTCCAAGAGTAGTACTTGCTTTTGGTTTTCTCATTTTCACATTATGTAATTTGTCTAATTTTGCAGCTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTGGTAAGACAGTATATAATTATTTCAAAAACAACAATATATTTGAAAACATCTGATCATCACTGGTCCCATACTTAGATCAGTACAATAAGAACTGGCAAAGGTTTGACTGAGTTATGTAGGTTCCTGGATGGTTCAATAAGCCAATCAGCTTGTCCAGACTTTTCTTTTTTCTTGCAAGTCAAACCTATCCTTCTAAGCATATTCTTGCTTCTTTAGATCTTGATATTACCACCGTATATTTTGCTCTCTCATGAGATGTTGTAAGGAATATGAGGATTTTGAGCTAGCTCTCATCAAAAGAGTTTTACGCGTCAAGCTAAAAAGTTGCAACTACCCTCTGACTTAAATCATTTTAGGATTTAAATATGGAGAACACTCTCTTTTTGTAACTAGGCCAAGATATATTGCTTTATGATCATTTAACTTCTGCAATATTCAGCATCGTTGTTTTTTCAGCGTCTTTCGATAGAATTGCCCATCTTGTCGATCGTATTATACTGATATGTCCAGTTTGTGATTCTTGTACATATTAATATTGTAGGATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTG</genome_strand>
        <mrna_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG......................................................................................................................................................................................................................................ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGATGGAGTGGAAGTG.........................................................................................................CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGCTGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGCCCGAACGAGCAGTCCAGATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAAGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCAACACAGTCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3074" ref_strand="+" ref_description="SGN-M3074 cLPT-2-K6 [est_clones]">
      <seq>gcagaaaaacattaagtgcatctgttgtgaagcttttgaggtggtccttcaatgatgttatgcatgcttgtgcacaagttcaaaattgtgatttggctgaacagttgatgttacagatgcaaactcttggtttgcaaccatcagggagtacatatgatggcttcattagggcaattgctaccacaagaggctttagtgatggagtggaagtgctaaaggttatgaaagagaaaaatattaagcctcatgattcaactcttgctgttttagcagtcatgtgcagcagagagttggaactcaatctagcagaggctttcttggctgagatgtccaaaatccataatcctcgtccttataatgcttttcttgaagcatgtgatgttctggatcggcccgaacgagcagtccagatattggctaagatgaaaaggttgaatcttcagccaaatatcaggacatatgagttgctattctcactgtttggtaatgtaaatgcaccttatgaagagggcaacatgctgtcacaagtggatgttgctaaaaagataaatgctatagaaatggacatgatgaggaatggcattcaacacagtcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="7040" stop="4966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6740" g_stop="6625" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6394" g_stop="6299" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6193" g_stop="6020" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="386" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5478" g_stop="5266" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="599" r_length="213" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M3074" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6740" e_stop="6625"/>
          <exon e_start="6394" e_stop="6299"/>
          <exon e_start="6193" e_stop="6020"/>
          <exon e_start="5478" e_stop="5266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAGGTATTGCTACAATATCCAGTTGCTATGATGTCCCCATCTGTCTAATGTTAGAAAATTTATGCAGGATCGGAAGGATAGTCCTTAGGTCCATATGACTAGGCACATATCATTGTTTTACGCAAAAATAAGCCAATAGCAATTGTCTCAACTTTCTTTCTCAAAAAAAAATTGTCTTAATTTCACAAGGTAATTTCCTGTCTGATTTTCACTAAGCTATCTCTTTTCTTTAGATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTGGTAATATATTATTAGTTTCATGGGATCTTCTTTTTTTTCTTCCAAGAGTAGTACTTGCTTTTGGTTTTCTCATTTTCACATTATGTAATTTGTCTAATTTTGCAGCTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTGGTAAGACAGTATATAATTATTTCAAAAACAACAATATATTTGAAAACATCTGATCATCACTGGTCCCATACTTAGATCAGTACAATAAGAACTGGCAAAGGTTTGACTGAGTTATGTAGGTTCCTGGATGGTTCAATAAGCCAATCAGCTTGTCCAGACTTTTCTTTTTTCTTGCAAGTCAAACCTATCCTTCTAAGCATATTCTTGCTTCTTTAGATCTTGATATTACCACCGTATATTTTGCTCTCTCATGAGATGTTGTAAGGAATATGAGGATTTTGAGCTAGCTCTCATCAAAAGAGTTTTACGCGTCAAGCTAAAAAGTTGCAACTACCCTCTGACTTAAATCATTTTAGGATTTAAATATGGAGAACACTCTCTTTTTGTAACTAGGCCAAGATATATTGCTTTATGATCATTTAACTTCTGCAATATTCAGCATCGTTGTTTTTTCAGCGTCTTTCGATAGAATTGCCCATCTTGTCGATCGTATTATACTGATATGTCCAGTTTGTGATTCTTGTACATATTAATATTGTAGGATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTG</genome_strand>
        <mrna_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG......................................................................................................................................................................................................................................ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGATGGAGTGGAAGTG.........................................................................................................CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGCTGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGCCCGAACGAGCAGTCCAGATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAAGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCAACACAGTCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6798" ref_strand="+" ref_description="SGN-M6798 C2_At1g42440 [cosii_markers]">
      <seq>tgggacccaaaagaatctctacctcaagagtagggctagaatatttgcatttgacaattttaataggacgcaaaagcatgtactgtctagagcccgagagatggaacagaacgttgatgaatgtataccagctggttcatatgcaaggctccatatccgggaagttccaaatggtgtggcaaacaagttaaatcttgtaacgaagacaatgcctgtgatcctgtgtggtctgatgcagcatgagtctaaaatttctgtccttcacttcagcttaaaaaagcacgacagttacactgatccaataaaatctaaagaagagatgatattcaatcttgggtttcgccagtttgttgcaaggcccatattttcttccgatagttttaacgctgataagcaaaaaatggagagatttctccatcccgggcgtttttcagtagcttcagtatatgctcctatttcatttcctccccttcctttaattgccctgaagattaaagacgatgcaactcctgccactgttgctgccattggctctttgagaagtattgacccagataggattattctaaagaaaattattttaaccggttaccctcaacgagtatcaaaacagaaagcgacggtaagatacatgtttcataacccagaggatgtcagatggttcaagcctgttgaagtttggtcaaagtgtggtcgtcgtggtcgcatcaaggaacctgttggtacacatggggcaatgaagtgcatcttgaatggagtcctccaacagcatgacacgttatgcatgagtttgtttaaacgcacatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="14340" stop="11267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14136" g_stop="14125" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14124" i_stop="14039" i_length="86">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14038" g_stop="13782" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="270" r_length="258" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13572" g_stop="13486" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13390" g_stop="13160" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="588" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12535" g_stop="12457" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="667" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12376" g_stop="12313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="731" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11644" g_stop="11567" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="809" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M6798" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14136" e_stop="14125"/>
          <exon e_start="14038" e_stop="13782"/>
          <exon e_start="13572" e_stop="13486"/>
          <exon e_start="13390" e_stop="13160"/>
          <exon e_start="12535" e_stop="12457"/>
          <exon e_start="12376" e_stop="12313"/>
          <exon e_start="11644" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACCCAAAAGTAACTTCTTCTGTTAATTCAATAATTTGTCTCAAAAAATATCTGGACGTGATCTAATTGTATTAAATCTTGGTTGGGATTTGCAGGAATCTCTACCTCAAGAGTA-TGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAGGTACCTTATCTTGTTATATGATTTTGTAGTATCTCCCCCCTTATTTTCTTCCTTAGTGTTTCTATGTGTAATTGTTCAAGTACTCAAGTAATTTTCACTTCAGGTACCTCATCTTGTTATATGCTTTTGTAATATTTCCCCCCTAATTTTCTTTCCCTAGTGGTTCTATGTGTTATTGTGTAAGTACTCAAGTAATTTTCTTTTTGCAGCTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAGGTGATTTTCATCTCTGTAATAAATTTTGTAGCCTTTTGCCAGGTCAGGTACTAATGTTCATTGGCTTCTTTCTGCCCCCTCCCCCCTGATTGCAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGGGTAAGATTCCTCTGTCATTTTAAAGGGGGGCTTGGATATTCTATTCCTTTGTTTATGTGGGAGGGGTCTGATTTCTGAGAATGACAGCATAATGAAGTATCGCTACTTTAGGTTGGATTGATTGATCAGCTTCGCTACCTATAACACTTGCTATAGTTGTGATTATATTTAGGTTTTTCACTGTTCTGTTTTTTCTCGGCTTTCATTTGTTTACAGCGGTAGAGATGTTTAGAGGATTATTTCTGGAACTTCTTGTTCTGAACAACTTAGACTTTCTGTTTTTTTTTTAATCAAATTTGGTCTATAGACTGAACCTACTAAGTGCCACAATATAGACTTGTTATGCTTTTTTACTAGGCATAACATAACATATAATGTGTGAACCAAAAATCTTGTTAATTGTGTATTCCAGCTGGGATCCTGGTAAAGTTAATTGGAGTATCATTCTAGTCATTCATCCTTGCATGGTAGAGAACTTTTTTGAGGATCATATAATTTGCAATATTTTATTTTAGAATTTTAGGGTTTTTTAGTCCTTAAAATGCAAAAGCTGATTGTAGAGAGTCAGTAGGTGATATTGTTAAGTTAACCTTTTGTTCACAAGATATGTCATCTATGTTGCAGTTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAGGTATGCAAACAATTGACTTTTCTATTTTCTTCTTTGTCATGCTCTTTTCACTTTTAACATATTTACTGGACCTTTTGTAGCCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATGGTATGTCTGAAATTTGATTTGAAGTCTTCGAGATATATGCGGAAATTTTCCACTCTTCTTCTATCCAAACATCTCCCCTCCTCCCCCCTTGAAAAGAGGAAAAAGGCTTGTCCAGATGTTAGAATTTTCCAGTGTTGTGCTCATTAGTGAGTGGTGTTATTTGACTAATCATGCATAAGGTTGTCATTTTCCCCTTATTATGTGGCCTGTGGCCAAGGAAGCCTATTGTGAGCATACATTTCCTCTGTTCACGATGCATATAATTTAGATCTACTAGAAAAACTAAAAGCTCTGCACGTTATTGGGTTCTTTGAGCACTCGACTATCTACAGCTTGTAGGTCAGCAAGCATATGATCATTTCATTGCCCTTCTACCATTTGTGGGTGCCCGAACATTTTGACCCTTTCTAGATGAATACCTGCTGTCGCATGCTCTACTAACTGGCAAAAGTACAATTGTTTTTTGAGTCTGTTGTAGGATGTATTATGTCTTTTCGATGTTCCTTGTCATGGATTTAACTTGTACATGTAGCAGCAGGCAATTTGCCTCATTTCGCCACTAATCCCACTTTTTGTAGATGGTTGCCTGTAGTATTTCTTGTAGCTGACTGGACAACGTAAACAATCTTGCATTGGTAGTGTAAACATGTTAATCTATTTTTGTGCAGGGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACC</genome_strand>
        <mrna_strand>TGGGACCCAAAA......................................................................................GAATCTCTACCTCAAGAGTAGGGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAG.................................................................................................................................................................................................................CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAG...............................................................................................GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG................................................................................CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8933-2" ref_strand="+" ref_description="SGN-M8933-2 C2_At5g42320-2 [cosii_markers]">
      <seq>tcaaaacaaagggtatcatgcagagacgactgtagttacttattgccggaacaagaaagactgcgatgacagataaattgcttgtgttccagagttttgggcagcatgggagggagctcataactacggagcttgcgttgcggattctttccattttaagtgaagaggaattcttatccagtgcatacccacttaatttaaataacacgcttgataggcttgtcataaaggttgttccaatggagaatgtgaatgggcgtaaacttgtagaagcaggggatctctgtgaaagaagaaatggaagaggagttgatcttaatcggaattggagtgtggattggggcaagaaagagaaggattatgatccatatgaagaaaatcctgggtccgccccttttagtgagcccgagacacaaattatgcggaaaatatgtgcatcatttgaaccacatgtatgggttaacgtgcattctggaatggaggctctatttatgccatatgatcacaagaacacgactccggaaggattaccttctcagaggatgagattaatgcttgaaaagttgaatcgttttcagctgaatgatcgttgcttggttggatctggcggaggctctgtcgggtatctagctcacgggacagcaactgattacatgtatgatattgcaagagtgcccatgtctttcaccttcgagatctatggtgatagcacggcctcgtcaaaggactgctttaagatgttcaatcccactgacatcactacttttaatagagttctcaacgactggtctgctgcattttttacgctgttcagtttgggtggagtccagattgaggaacttcatccaaatgcaactggatccggttttgagaagtgggtctctatcgatgattatctgaatggttatttaatggaaaggaaaagtaggtacgggaagaaaatggaggtgctcgagctgggaatgcaggagattaggacatactttagattgttcttgttatcatctgtacttctgatgtttatgttttgttcaagaatctcaaagagcggccggcaaattgtttctgctatgtccttgtgattctgtgatggtattctttgctgcccttgagatttagctagacagttttgagagagctagaaggtgaaaaaaagggcatgccaaaatattctttagctgtgtaatttattacctaatttctttttccctttgattctatatagaatgctagagcttagaaaggctcttgttgatgttgaattgttaacattgtttggttgagagtgtggatagataatatagatttttgtcatgtcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="25957" stop="21505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25586" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25585" i_stop="25319" i_length="267">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25318" g_stop="25161" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="230" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24459" g_stop="24390" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="300" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24299" g_stop="24244" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="356" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24243" i_stop="23982" i_length="262">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23981" g_stop="23856" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="482" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23343" g_stop="23204" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="622" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22889" g_stop="22817" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="695" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22694" g_stop="22620" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="770" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22355" g_stop="21806" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="1320" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1321" polyA_stop="1335"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M8933-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1320</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8933-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25586"/>
          <exon e_start="25318" e_stop="25161"/>
          <exon e_start="24459" e_stop="24390"/>
          <exon e_start="24299" e_stop="24244"/>
          <exon e_start="23981" e_stop="23856"/>
          <exon e_start="23343" e_stop="23204"/>
          <exon e_start="22889" e_stop="22817"/>
          <exon e_start="22694" e_stop="22620"/>
          <exon e_start="22355" e_stop="21806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTTGTAAGTTTACTTTCTTTGGTCCGTTATTACCTTTATTCATGTCCTGTAGAATGGAAATATATGTTGTATTACCTTCCCAGGGTTTCCTAGTTAAGATAGTTAACTCACGAGGAAAAAGGAGAGAGGAGGGGAAGTAGAGTGGTTTCTTTGAAAAGACATTGGGAAAATGCTTTTCCAGACATTATACTGATTTGGTCTTTAGTGTTAGAAAATCTCAGATTGGTCATTGCTGGTGTTTTTGACAGATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAGGTAACTCCTAGTCTATTTGGAACTCACAGTCAAATAAGGTGAAAATAATTCATGTATATGTTTTATGAATCTATAAGTTGTTGAATCAGAAAAATTTTAACCACTCCTAATTGAACAGGATCTATATTTACATTCATCCCCTCTTCAAATGTTTAGTTCCTCAGCTCTTTTAGTACCCTTCAAAAATATCCTGCAGAACTTCTTTTATTTTAAGGTTCTTCCATTGTCCACACCTGCTGATGTTGGTGTGATTTTGTTATCCCATCCTCCAATGTACTGAAGCAGTTTGTCTAGGAGATTCTAAATTAGCCATTTTCTGAAGATTTCCCTGCACAATGCAAAACATTTTTTTTGGCAGAGACAGATTAACCTTTCACACAGCTCTCATAGAGAGAGCTCGCTGTCTCAAATTTAGCGTATTGATTTCTCTGTTTTGTCAGACATCAGTAAACATCTTTCAAGTTGTTTTCTAGCTGCAGGTTGTTCATTCAGCTCAGTAAATTCGTTTTAGTCACTGTTTGCTTTTTAAATCTATCAGGTCCTGCTGGTATAGAAATTCAAAATTCACCCAATTAATTAGTTCACTGTATGCCATGGGCTGTAAATAGTTAAAGAAACAAAGATCTTTATCACTTTAAAGAGTATCCAAATTCTCTTTTAAACTAATGTTACTGGGGAATGCTTTTTAATCCGTCTAACAGGTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATGGTATAGCTATTTATCTTGCTAGTCTGATCACAGAAATTGACTCTATAGGGAAGTACCAAGAAAATTATTTCCAACCCTTTTTTTTGGCAGGAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAGGTTTATTCTTTAGACTGCCATTAGTAGACGATTCATTGTGTTTCGATCATGTGTGTCTTCTTTACTGATGTATGGACAGGTTGTGTTCCTTTTATATAGGTTGTTACTTATGCATCTTGTGGTGCTTAAGTAATATTTGCACTTAGTACCAAATTAGGATTGCTTTACTGGATCTTGTGTATATGCTGTTTGTGTTTACTAGTTCAAGCTGATGCAGCTATGTGCTTATACAACTCTTGTCCCTTTGATCTTTACTTTTCAGGATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAGGCAAGTATACTTTTGTTAGTATGTCTTGCTGCTGTTTGTCTTCTGAACTTCTCTGCATATATAAAACATACCATTTACAAGCTTTCCCCATAACTCTTTTTAAAATTTAGGGCATAGAGGAGTCCTACGACCTTGTAGGACTCTCCTAGACATTTTGCAAGGTGCAGCTCCTTTTAATAGATTATAGCTTGTGCCTGATCTCCCCATCTTGTTTAGGTAAAATCATGAATTCAAACTACAATAGGATGATCAAATTTAACCATCTTTTCATTTGAAAATTTGTGTGTATCTACTTCCATAAATTAACTGGTCAAAGTGAACCAAATAGATGTATGTCAGGTGTAAATTGTCTTCTTCATGTTTATGACGTTTTACTGTTTTTGGTATATTAAGGATCAAATTTCAGGATCACAGAGATTATCTTCTTCATTTTTTTATAAAGAATAATAATCCATTTTAGTTTCTTTGTGAATGAAATACTTATTCTGTGCTGTTCATGTAATTTTTTTCAGGCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTATGTTTAGCTACTTGGCTTGAGAAGGGAACATAAGTGTATTCCTGTTAGATATATGCAATATGCTTGTTGTTTATCTAGCAGTGAATGTATTTTCTATTACTGCATGTTAAGCCACTTATGGATAAAAGAATAATGATAAAGTCACATCACAGTGTTAGGCATGAAAAACATGCACATCTGATGCCTTCCTCTGTTTGAAGTAGATATTAGGGTCACCATTTCTTTATTATGTAGTTTTAGATGTAAGTTTTCGTTACCTCAAGTATAACATTACGTCACTTATTCAGGTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAGGTTTGTCTTTGCATTTTATCAATCAATATACAGTAAAGTCCTTGCTCAATGTCAAGCATCTTTTTAGTGATAATGCAATGTCCGATAATGTATACATGATGCATGCATCTATTGGTTGGCAGATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAATGTAAGTTATACCCTCTGTTCCATTTTATGTAATACTCTTTCCTTTTTAGTCTGTTTCGAAAAAGGATGATTGAAACAATTTAACTTTAAATTTCGCACTTTACCCTTAATAACATGATTTTGTAGCCACAAAATTCTTCAACTCCATACACAATCAAACACCTTCACTCAAAATGCATGAAGGGGACATTTCGTAGATGATGCATTATCTTTGCTATGTGTCTTGTCATGTCAAACACTCAGCCATATTCACTTTGAATTGCAGAGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</genome_strand>
        <mrna_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAG...........................................................................................................................................................................................................................................................................ATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG..........................................................................................GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAG......................................................................................................................................................................................................................................................................GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG..........................................................................................................................................................................................................................................................................................................................GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG..........................................................................................................................ATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAAT........................................................................................................................................................................................................................................................................AGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8933" ref_strand="+" ref_description="SGN-M8933 C2_At5g42320 [cosii_markers]">
      <seq>gattatgatccatatgaagaaaatccagggactgccccttttagtgagcccgagacacaaattatgcggaaattatgtgcatcgtttgaaccacatatatgggttaacgcgcattctggaatggaggctctatttatgccatatgatcacaacaacacgactccggaaggattaccttctcagagaatgaaattaatgcttgaaaagttgaatcgttttcaactgaatgatcgttgcttagttggatctggaggaggttctgtcgggtatctagctcatgggacagcaactgattatatgtatgatattgcaagagtgcccatgtctttcaccttcgagatttatggtgatagcacggcctcgtcaaaagactgctttaagatgttcaaccccattgacctcattacttttaacagagttctcaacgactggtctgcagcattttttacactgttcagcttgggtggagtccagatgaaggatcttcatccaaatgcaactggatctggtttcgagaagtgcgtttctattgatgattatctgaacggttatttaatggaaaggaaaagtaggtacgggaacaaactggaagtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="24281" stop="21874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23981" g_stop="23856" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23343" g_stop="23204" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="266" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314">
            <donor d_prob="0.976" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22889" g_stop="22817" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="339" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22694" g_stop="22620" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="414" r_length="75" r_score="0.907"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.781" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22355" g_stop="22173" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="597" r_length="183" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M8933" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23981" e_stop="23856"/>
          <exon e_start="23343" e_stop="23204"/>
          <exon e_start="22889" e_stop="22817"/>
          <exon e_start="22694" e_stop="22620"/>
          <exon e_start="22355" e_stop="22173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAGGCAAGTATACTTTTGTTAGTATGTCTTGCTGCTGTTTGTCTTCTGAACTTCTCTGCATATATAAAACATACCATTTACAAGCTTTCCCCATAACTCTTTTTAAAATTTAGGGCATAGAGGAGTCCTACGACCTTGTAGGACTCTCCTAGACATTTTGCAAGGTGCAGCTCCTTTTAATAGATTATAGCTTGTGCCTGATCTCCCCATCTTGTTTAGGTAAAATCATGAATTCAAACTACAATAGGATGATCAAATTTAACCATCTTTTCATTTGAAAATTTGTGTGTATCTACTTCCATAAATTAACTGGTCAAAGTGAACCAAATAGATGTATGTCAGGTGTAAATTGTCTTCTTCATGTTTATGACGTTTTACTGTTTTTGGTATATTAAGGATCAAATTTCAGGATCACAGAGATTATCTTCTTCATTTTTTTATAAAGAATAATAATCCATTTTAGTTTCTTTGTGAATGAAATACTTATTCTGTGCTGTTCATGTAATTTTTTTCAGGCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTATGTTTAGCTACTTGGCTTGAGAAGGGAACATAAGTGTATTCCTGTTAGATATATGCAATATGCTTGTTGTTTATCTAGCAGTGAATGTATTTTCTATTACTGCATGTTAAGCCACTTATGGATAAAAGAATAATGATAAAGTCACATCACAGTGTTAGGCATGAAAAACATGCACATCTGATGCCTTCCTCTGTTTGAAGTAGATATTAGGGTCACCATTTCTTTATTATGTAGTTTTAGATGTAAGTTTTCGTTACCTCAAGTATAACATTACGTCACTTATTCAGGTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAGGTTTGTCTTTGCATTTTATCAATCAATATACAGTAAAGTCCTTGCTCAATGTCAAGCATCTTTTTAGTGATAATGCAATGTCCGATAATGTATACATGATGCATGCATCTATTGGTTGGCAGATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAATGTAAGTTATACCCTCTGTTCCATTTTATGTAATACTCTTTCCTTTTTAGTCTGTTTCGAAAAAGGATGATTGAAACAATTTAACTTTAAATTTCGCACTTTACCCTTAATAACATGATTTTGTAGCCACAAAATTCTTCAACTCCATACACAATCAAACACCTTCACTCAAAATGCATGAAGGGGACATTTCGTAGATGATGCATTATCTTTGCTATGTGTCTTGTCATGTCAAACACTCAGCCATATTCACTTTGAATTGCAGAGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTC</genome_strand>
        <mrna_strand>GATTATGATCCATATGAAGAAAATCCAGGGACTGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAATTATGTGCATCGTTTGAACCACATATATGGGTTAACGCGCATTCTGGAATGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTATTTATGCCATATGATCACAACAACACGACTCCGGAAGGATTACCTTCTCAGAGAATGAAATTAATGCTTGAAAAGTTGAATCGTTTTCAACTGAATGATCGTTGCTTAGTTGGATCTGGAGGAGGTTCTGTCGG..........................................................................................................................................................................................................................................................................................................................GTATCTAGCTCATGGGACAGCAACTGATTATATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG..........................................................................................................................ATTTATGGTGATAGCACGGCCTCGTCAAAAGACTGCTTTAAGATGTTCAACCCCATTGACCTCATTACTTTTAAC........................................................................................................................................................................................................................................................................AGAGTTCTCAACGACTGGTCTGCAGCATTTTTTACACTGTTCAGCTTGGGTGGAGTCCAGATGAAGGATCTTCATCCAAATGCAACTGGATCTGGTTTCGAGAAGTGCGTTTCTATTGATGATTATCTGAACGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAACAAACTGGAAGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6670-2" ref_strand="+" ref_description="SGN-M6670-2 C2_At1g20575-2 [cosii_markers]">
      <seq>gagatcaacaaaatgggggagaagaacaagtacagtataattatacctacctacaatgaacgtctcaatattgctctcatcatctacctcgtcttcaagcatctcacggatgttgattttgaaataatagtagtggatgatggaagtccagatggcacacaggatattgtcaaacaattgcagaaagtatatggagaagatcgtattttattaagacctcgacctcggaaacttggtctaggcactgcgtatattcatggtttgaagcatgcctcaggcaattttgttgttattatggatgcggatctttctcaccatccaaaatacctgccaagatttatcaagaaacaaatggagacaggtgccaatatagttactggaactcgatatgtttctagtggtggtgtccacggatggaaccttatgcgcaaattgacgagcaggggagccaatgtccttgcacagacactactttggccgggtgtatcagacttaactggatccttccggctgtaccagaagtctgcactagaagacatcataagctcttgtgtcagtaaaggatatgtttttcagatggagatgattgttagggcttcaagaaaaggttaccgcattgaagaggttccaattactttcgttgatagagtatttggaagttctaagcttggaggatctgaaatagtggagtatctaaagggccttctgtatcttctggttacaacttgatatgtttaacaagctgcatgaccagagaatctgaagacttgagttgttttgcaacctgtgacattctgaagacttgaactaggaccatataacaaattctttttctttttgcttcagctgatgtaaccaaaactttgatgaatgagctattatgtattggaaagagtgttgctgaagtaatttccaatgctactttggtttattttgtggatgatgctttccatttttggataatacacttgttcaagttatctgtgaatattaacttgcattttccagcttatataaatgtctacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="43984" stop="39279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43684" g_stop="43578" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42122" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="207" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42023" g_stop="41990" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="241" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41901" g_stop="41825" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="318" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41281" g_stop="41256" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="344" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77">
            <donor d_prob="0.773" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41178" g_stop="41014" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="509" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40581" g_stop="40467" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="624" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40466" i_stop="39984" i_length="483">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39983" g_stop="39579" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="1029" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M6670-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1029</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6670-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43684" e_stop="43578"/>
          <exon e_start="42221" e_stop="42122"/>
          <exon e_start="42023" e_stop="41990"/>
          <exon e_start="41901" e_stop="41825"/>
          <exon e_start="41281" e_stop="41256"/>
          <exon e_start="41178" e_stop="41014"/>
          <exon e_start="40581" e_stop="40467"/>
          <exon e_start="39983" e_stop="39579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCACGTAAACACTCTTTCTCTCTATCCCGTTTCTTTTTTTTTTGTGTGTGTGTGTGTGATCACTGCTATTAAAGTTTCTGTCTTTTTGGAAAATATTTGCATCTGGAAAAATGGGTTTTATGATTTATTAGAAAAGAATTGTTTTTTGGTTTTTATATTCGATCTTCTGTAAGCAACTTAAATTTGGCATGAATTGGAGCTGTGTAGAGGAAATTGACTAGAATTTTGTTGAAGTTGTTGCTATTAAGATCGTTTGTGTAATATCCCAGCATTGATTAATTGAATTAATCTATGATCTATGTGAAAACGGTTATCTTTATCATCAAAATCTAGGAAAAGGTAGTCTTCAATTTTGAACTGAATAGGAGAGGAGAAATTAGAAAGGAGTATAGAATGAAATGGAGAAGAAAGTAGATAGAGTTAAGAAAAGAGGCAAGAAAGTGTAAAGAAGAAGCGAAACGAAACAGAGAGCAGAGAGGAAGATCGGGTGATAGAGAGATTAGATGACCAGTATAGGTATAGAAGGGAGAGAGGAATGAGCATTTTCCACATTTTCAGAAGCTTTTTCTACCCCTAGCTTCTATCTCTTTGTGTGTTTGTGAGTGAGATGTTCAGTTACAACTCATGTGCCACCCATGTTCTCACAACTATTTGTGGATTCATGACAGTTTGATTTAAATTTGAGTTAGATAGGCATGAGAATTTGTAAAGATTGTATCTTTTTGGAATCTAATATAGATGGTTGGGAGCTTTCGTGAGGATTGTAACTTTTTGAGGGAATCCATTGATTAGTAGGCTGGAAAATAACGTGGCTTACACCCAAATTCCAAGTGATTGTTGGCAGATATCACTTATCAGGAGCAAATTTGGAAAGGGCTATGTCAAAACATTTTACAGTTCTTGGAATCAATTTTCACCATTTATAAATTATTTTCGAAGATGATCTTTCTTTTTATAAGGAATTTGGGGGATCTATGCATTAATTTTTGTATGGATGAGGAGTTAGGTTCTGTCCTTTACATGCTTACCATTTTTTTCATATTTATTTGCTCATTGCTAATAATATTGATGCTCAACCACGAGAGAAGACATTGTTATTGAGATTGATTTATATAGATGTCAGGTCCTGTTTTATTCGACCACATTGTTGTTTATGACGCAAGAAAAATGTACACCATGTTCATGACATCATTTAGTGTCTTTGAGGGGGATGTTCCCATTTTGAGGACTAAAATTCATTTTTCCCTTGTATTTGAATTAAATCTCAGCTTATTTTTTCATATGCAATATTTAGAGGTGATAAAATCATGTAAATGCATAAGCAGATTCTTATTGCAAAATTTGTTTTTTCTTGACTCAGGGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATTGTTAGTAGCTTCTTACTTCATCCAGTTGTTGCACATTATGCTTCCCTGATCATACCAGTTTATCATCTCACTTTGCTCATTTCTCTTGTTTACTACAGTTATTAAGACCTCGACCTCGGAAACTTGGTCTAGGTACTTCCATTTTATTATGATAACCATGATTTCTTTTTCATACGAAGATGTTAGCCATGAATAGTCTCTGACATTCCTCTTATCTCAGGCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCATGTAAGTATGATTGAAGATAAGGGCCTCGTTTGGTTTCCTTTTATATTTTGTCTTTTTGTTGTGAAATGTCCTTTATCTATTTGTTGGAACATCAAGTGTTTTTGTTGGGAAAGGAACAGAAAGGGGATATGTGGTGTGCAGTGGGTTTTTTTTATGCTTGATGTTATGGGAAGAAACGATTCAAATAGCTCTGGGTGTGTATATCGAATAATTAAATTTATTTTTTGGGTTAATCGTTATTTTTCACGCCCTCATTGTTGCACTATTGCATATCCTGTCTGTGCCTGCGGTGATTTAGTTCCCCCAGCATCCAGCACCCTCAATAGTAAGAAAAAGGGCAATTTGTTCCTTGGACAACTGAAACTTGATAGTGTAGGCCCACTTCATCAAAACTTAAAAGTGTAGGACCAAAAATCAGTGACTTCCTGAATTTAATTATGTGAGCCTGTATATTGTTAGTCTGTCTCATAAAATATTAGTCTCTATACCAAGCTTATTTGATTTTAAATTTTATGGTTGATTCTTTTATACTTTTTTTTACAGCCAAAATACCTGCCAAGATTTATCAAGTGAGTATTTGTTTTCTTAAATTTCAGTTTTCTTGTAATGGTGAGCACTAGAACTATAATTTAAATTTTATGTCTAGGAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCGGTATGTTTTAATTTGGAAGTAGAGGAAAATCTGTGGTTCGATGAATTGTTATGAGCATATTTAGGAAATGTACTTTGCATAAACCATAAGGGGTTGCTTAGATTAGGATTACTTCCTAATATCTGGGACTTCGGCGTGGAGATTATAAATCTAATGGAATGCTGGATTGGGAGATAATGGTTGTAATTGTTCAAGACTTCCTATTTTTCTACAAACTTATAACTAAAAGGAGGGAAGTCCACATAGAAAAGGAAAAAAGACACTGTACTTTTATATGGAAATTGATTTGGTCTCAGGAATCATTGTTTTGTGTGATTTTTTGTTCTTAAGAAACTGAATGATCATCACGTGTTTTACTCTTATATACTCTAATGCTCACAATTAATGTAATTTGTATAATCATTGTCTGAAACTGAATTGCTTGTTTTGAAGGCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAGGTAGCTAAAGACATGGATTTACTGTTGAATACTAATTAATCCACTGCATTGACATTTGTTTGGACAAGAAAATCTTGTCTCTTATTGCATCGTGCTACTAACTGCATAATTTATGATGTCCATAGTGCTATTCTAATATTAATAATGATGCAAACTAATGGCAGTTCTTAAGCATTTAGTTGGTTATATGCTCTCAAACTGGGAGCTTTGTTGGTTGCTATCCCCCAGTTGTCTCTCATCCTAACATTGTATTATGCGGCTGTAAGCCATTTGATTTTTCTAAGAGAGCTCTCTTCATTATTATTGTTGTTTTTCCTGAGTCAATTGCACCCCCATCCCCACTCCGTGTATTTTTTTTCTTTTTCATCTCAGTTCTTCACAATAGTCACCTGCAACCACTTCATTGTTTGGTTTTATTTTTATGATGTACTTTTCATCTTTCCAAAGGTAGCCTGAATTCAAGTTGGATTTTACTATTTGTAGGTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</genome_strand>
        <mrna_strand>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT..................................................................................................TTATTAAGACCTCGACCTCGGAAACTTGGTCTAG........................................................................................GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAATACCTGCCAAGATTTATCAA.............................................................................GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6670-3" ref_strand="+" ref_description="SGN-M6670-3 C2_At1g20575-3 [cosii_markers]">
      <seq>acagtataattatacctacctacaatgaacgcctcaatattgctctcatcatctacctcgtcttcaagcatctcacggatgttgatttcgaaataatagtagtggatgatggaagtccagatggcacacaggatattgtcaaacaattgcagaaagtatatggagaagatcgtattttattgagacctcgacctcggaaacttggtctaggcactgcatatattcatggtttgaagcatgcctcaggcaattttgttgttattatggatgcggatctttctcaccatccaaaatacctgccaagatttatcaagaaacaaatggagacaggtgccaatatagttactggaactcgatatgtttctagtggtggtgtccacggatggaaccttatgcgcaaattgacaagtaggggagccaatgtccttgcacagacactactttggccaggtgtatcagacttaactggatccttccggctgtaccagaagtctgcactagaagacatcataagctcttgtgtcagtaaaggatatgtttttcagatggagatgattgttagggcttcaagaaaaggttaccggattgaagaggttccaattactttcgttgatagagtatttggaagttctaagcttggaggatctgaaatagtggagtatctaaagggccttctgtatcttctggttacaacttgatatggataacaagctgcatgaccagagaatccaaagacgcgtgttgtttagcaccctgtgacattctgaagacttgaactaggcccatataacaaattcttttttcgttttgcttcagcttatgtaaccaaaattttgatgaatgagctattatgtattggaaatagtgttactggagtaattttcaatgctactttggtttattttgtggatgatgctttccattattggctaatacacttgtgcaaaaaaaaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="43953" stop="39332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43653" g_stop="43578" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42122" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="176" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42023" g_stop="41990" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="210" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41901" g_stop="41825" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="287" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41281" g_stop="41256" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="313" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77">
            <donor d_prob="0.773" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41178" g_stop="41014" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="478" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40581" g_stop="40467" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="593" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40466" i_stop="39984" i_length="483">
            <donor d_prob="0.541" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39983" g_stop="39632" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="946" r_length="353" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="957" polyA_stop="971"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M6670-3" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6670-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43653" e_stop="43578"/>
          <exon e_start="42221" e_stop="42122"/>
          <exon e_start="42023" e_stop="41990"/>
          <exon e_start="41901" e_stop="41825"/>
          <exon e_start="41281" e_stop="41256"/>
          <exon e_start="41178" e_stop="41014"/>
          <exon e_start="40581" e_stop="40467"/>
          <exon e_start="39983" e_stop="39632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCACGTAAACACTCTTTCTCTCTATCCCGTTTCTTTTTTTTTTGTGTGTGTGTGTGTGATCACTGCTATTAAAGTTTCTGTCTTTTTGGAAAATATTTGCATCTGGAAAAATGGGTTTTATGATTTATTAGAAAAGAATTGTTTTTTGGTTTTTATATTCGATCTTCTGTAAGCAACTTAAATTTGGCATGAATTGGAGCTGTGTAGAGGAAATTGACTAGAATTTTGTTGAAGTTGTTGCTATTAAGATCGTTTGTGTAATATCCCAGCATTGATTAATTGAATTAATCTATGATCTATGTGAAAACGGTTATCTTTATCATCAAAATCTAGGAAAAGGTAGTCTTCAATTTTGAACTGAATAGGAGAGGAGAAATTAGAAAGGAGTATAGAATGAAATGGAGAAGAAAGTAGATAGAGTTAAGAAAAGAGGCAAGAAAGTGTAAAGAAGAAGCGAAACGAAACAGAGAGCAGAGAGGAAGATCGGGTGATAGAGAGATTAGATGACCAGTATAGGTATAGAAGGGAGAGAGGAATGAGCATTTTCCACATTTTCAGAAGCTTTTTCTACCCCTAGCTTCTATCTCTTTGTGTGTTTGTGAGTGAGATGTTCAGTTACAACTCATGTGCCACCCATGTTCTCACAACTATTTGTGGATTCATGACAGTTTGATTTAAATTTGAGTTAGATAGGCATGAGAATTTGTAAAGATTGTATCTTTTTGGAATCTAATATAGATGGTTGGGAGCTTTCGTGAGGATTGTAACTTTTTGAGGGAATCCATTGATTAGTAGGCTGGAAAATAACGTGGCTTACACCCAAATTCCAAGTGATTGTTGGCAGATATCACTTATCAGGAGCAAATTTGGAAAGGGCTATGTCAAAACATTTTACAGTTCTTGGAATCAATTTTCACCATTTATAAATTATTTTCGAAGATGATCTTTCTTTTTATAAGGAATTTGGGGGATCTATGCATTAATTTTTGTATGGATGAGGAGTTAGGTTCTGTCCTTTACATGCTTACCATTTTTTTCATATTTATTTGCTCATTGCTAATAATATTGATGCTCAACCACGAGAGAAGACATTGTTATTGAGATTGATTTATATAGATGTCAGGTCCTGTTTTATTCGACCACATTGTTGTTTATGACGCAAGAAAAATGTACACCATGTTCATGACATCATTTAGTGTCTTTGAGGGGGATGTTCCCATTTTGAGGACTAAAATTCATTTTTCCCTTGTATTTGAATTAAATCTCAGCTTATTTTTTCATATGCAATATTTAGAGGTGATAAAATCATGTAAATGCATAAGCAGATTCTTATTGCAAAATTTGTTTTTTCTTGACTCAGGGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATTGTTAGTAGCTTCTTACTTCATCCAGTTGTTGCACATTATGCTTCCCTGATCATACCAGTTTATCATCTCACTTTGCTCATTTCTCTTGTTTACTACAGTTATTAAGACCTCGACCTCGGAAACTTGGTCTAGGTACTTCCATTTTATTATGATAACCATGATTTCTTTTTCATACGAAGATGTTAGCCATGAATAGTCTCTGACATTCCTCTTATCTCAGGCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCATGTAAGTATGATTGAAGATAAGGGCCTCGTTTGGTTTCCTTTTATATTTTGTCTTTTTGTTGTGAAATGTCCTTTATCTATTTGTTGGAACATCAAGTGTTTTTGTTGGGAAAGGAACAGAAAGGGGATATGTGGTGTGCAGTGGGTTTTTTTTATGCTTGATGTTATGGGAAGAAACGATTCAAATAGCTCTGGGTGTGTATATCGAATAATTAAATTTATTTTTTGGGTTAATCGTTATTTTTCACGCCCTCATTGTTGCACTATTGCATATCCTGTCTGTGCCTGCGGTGATTTAGTTCCCCCAGCATCCAGCACCCTCAATAGTAAGAAAAAGGGCAATTTGTTCCTTGGACAACTGAAACTTGATAGTGTAGGCCCACTTCATCAAAACTTAAAAGTGTAGGACCAAAAATCAGTGACTTCCTGAATTTAATTATGTGAGCCTGTATATTGTTAGTCTGTCTCATAAAATATTAGTCTCTATACCAAGCTTATTTGATTTTAAATTTTATGGTTGATTCTTTTATACTTTTTTTTACAGCCAAAATACCTGCCAAGATTTATCAAGTGAGTATTTGTTTTCTTAAATTTCAGTTTTCTTGTAATGGTGAGCACTAGAACTATAATTTAAATTTTATGTCTAGGAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCGGTATGTTTTAATTTGGAAGTAGAGGAAAATCTGTGGTTCGATGAATTGTTATGAGCATATTTAGGAAATGTACTTTGCATAAACCATAAGGGGTTGCTTAGATTAGGATTACTTCCTAATATCTGGGACTTCGGCGTGGAGATTATAAATCTAATGGAATGCTGGATTGGGAGATAATGGTTGTAATTGTTCAAGACTTCCTATTTTTCTACAAACTTATAACTAAAAGGAGGGAAGTCCACATAGAAAAGGAAAAAAGACACTGTACTTTTATATGGAAATTGATTTGGTCTCAGGAATCATTGTTTTGTGTGATTTTTTGTTCTTAAGAAACTGAATGATCATCACGTGTTTTACTCTTATATACTCTAATGCTCACAATTAATGTAATTTGTATAATCATTGTCTGAAACTGAATTGCTTGTTTTGAAGGCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAGGTAGCTAAAGACATGGATTTACTGTTGAATACTAATTAATCCACTGCATTGACATTTGTTTGGACAAGAAAATCTTGTCTCTTATTGCATCGTGCTACTAACTGCATAATTTATGATGTCCATAGTGCTATTCTAATATTAATAATGATGCAAACTAATGGCAGTTCTTAAGCATTTAGTTGGTTATATGCTCTCAAACTGGGAGCTTTGTTGGTTGCTATCCCCCAGTTGTCTCTCATCCTAACATTGTATTATGCGGCTGTAAGCCATTTGATTTTTCTAAGAGAGCTCTCTTCATTATTATTGTTGTTTTTCCTGAGTCAATTGCACCCCCATCCCCACTCCGTGTATTTTTTTTCTTTTTCATCTCAGTTCTTCACAATAGTCACCTGCAACCACTTCATTGTTTGGTTTTATTTTTATGATGTACTTTTCATCTTTCCAAAGGTAGCCTGAATTCAAGTTGGATTTTACTATTTGTAGGTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTC-TTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAA</genome_strand>
        <mrna_strand>ACAGTATAATTATACCTACCTACAATGAACGCCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTGATTTCGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT..................................................................................................TTATTGAGACCTCGACCTCGGAAACTTGGTCTAG........................................................................................GCACTGCATATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAATACCTGCCAAGATTTATCAA.............................................................................GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACAAGTAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCAGGTGTATCAGACTTAACTGGATCCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGGATTGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGGATAACAAGCTGCATGACCAGAGAATCCAAAGACGCGTGTTGTTTAGCACCCTGTGACATTCTGAAGACTTGAACTAGGCCCATATAACAAATTCTTTTTTCGTTTTGCTTCAGCTTATGTAACCAAAATTTTGATGAATGAGCTATTATGTATTGGAAATAGTGTTACTGGAGTAATTTTCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTATTGGCTAATACACTTGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1831" ref_strand="+" ref_description="SGN-M1831 T1203 [cos_markers]">
      <seq>gatatcatcgattccctcatgtaagctcattgaagaaacctgtgagaggatattctccatgcacttcgattattgtacaactgcaagcattgactttgtcatgttagatgaatcaagttttagcaatatccttcagcatacagatttgactgtgacatctgaagagagagttctcaatgccatcttgctttggtgcttacaagcaagagaactgtatggatgggaagcagtaaacgaattgatggtaaattcaacacctgagatgctttttggagagagacttgagtctctaaatgaatttctgcaacttgtgcggttccctttactttcacctgatttgctgaataagtttgaacagagtagccttagccagcaaattcccacttttgaccatctggttaaagaggcattaagatttctggaatttgagatcaccgattttcaaggaaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgatggagatagcaacggggtcctttattttgctggcacatcatatgggaaacaccagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="56978" stop="55053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56678" g_stop="56543" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56220" g_stop="56008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="349" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55903" g_stop="55856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="397" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="456" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55458" g_stop="55353" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="562" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-M1831" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56678" e_stop="56543"/>
          <exon e_start="56220" e_stop="56008"/>
          <exon e_start="55903" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAGGTGATCATCATTTCCTCCTTATACATGATAAAATTATGAAGAGTGTTGGGATTTTTTGTACTTAAATCTCGATTCTCTAGTTGGAGTAGATGTCTGCAAGGGGGGATATCTTTTGCGAACTTCAACAAGTGCAGTATAATAGTGGGTCATATTTAATGTTTCATCCCTTGGACAGAAGAGTTCAGATGATTAGATCTTTGGAAATATTCTTGATAAGGAAGAAAATTATAAAATTCACTTTATTTAGAGATGCACTAGTAAGTTTTATATCCCATTGAATTGACAGTATATCTCTCTCACGATAAACGATTTCATTTTTCAGCATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAGGTATATACCTTGAAATTTAGGAGCACCTCACTTCCCGGTCATTCAAGATTAATGTATACTAAAGTTGGCTCTATTAATTGTTGGCTTTGATGGGATTCCTGCAGTTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGG</genome_strand>
        <mrna_strand>GATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG..................................................................................................................................................................................................................................................................................................................................CATACAGATTTGACTGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCAACTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG........................................................................................................TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG..................................................................................................................GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGAAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6740" PGL_stop="2256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6740" e_stop="6625"/>
            <exon e_start="6394" e_stop="6299"/>
            <exon e_start="6193" e_stop="6020"/>
            <exon e_start="5478" e_stop="5251"/>
            <exon e_start="3315" e_stop="3172"/>
            <exon e_start="3078" e_stop="2890"/>
            <exon e_start="2288" e_stop="2256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.910" acc_prob="0.564" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.864" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6740" e_stop="6625" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.910" acc_prob="0.564">
            <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="6394" e_stop="6299" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="6193" e_stop="6020" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="5478" e_stop="5251" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.864" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5250" i_stop="3316" i_length="1935"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3315" e_stop="3172" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="3171" i_stop="3079" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3078" e_stop="2890" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.962">
            <gDNA_intron_boundary i_start="2889" i_stop="2289" i_length="601"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2288" e_stop="2256" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6740" stop="6625"/>
              <exon start="6394" stop="6299"/>
              <exon start="6193" stop="6020"/>
              <exon start="5478" stop="5251"/>
              <exon start="3315" stop="3172"/>
              <exon start="3078" stop="2890"/>
              <exon start="2288" stop="2256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6740" stop="6625"/>
              <exon start="6394" stop="6299"/>
              <exon start="6193" stop="6020"/>
              <exon start="5478" stop="5266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6740" stop="6625"/>
              <exon start="6394" stop="6299"/>
              <exon start="6193" stop="6020"/>
              <exon start="5478" stop="5266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG : ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTG : CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG : GATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTG : TTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAG : AGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAG : ATATTGTTGAGATCTGAGGACTTTGATGGAGCA</gDNA_template>
            <first_frame> A  E  K  H  *  V  H  L  L  *  S  F  *  G  G  P  S  M  M  L  C  M  L  V  H  K  F  K  I  V  I  W  L  N  S  *  C  Y  R :   C  K  L  L  V  C  N  H  Q  G  V  H  M  M  A  S  L  G  Q  L  L  P  Q  E  A  L  V  T  G  W  K  C :   *  R  L  *  K  R  K  I  L  S  L  M  I  Q  L  L  L  F  *  Q  S  C  A  A  E  S  W  N  S  I  *  Q  R  L  S  W  M  R  C  P  K  S  I  I  L  V  L  I  M  L  F  L  K  H  V  M  F  W :   I  G  P  N  E  Q  F  K  Y  W  L  R  *  K  G  *  I  F  S  Q  I  S  G  H  M  S  C  Y  S  H  C  L  V  M  *  M  H  L  M  K  R  A  T  C  C  H  K  W  M  L  L  K  G  *  M  L  *  K  W  T  *  *  G  M  A  F  R  T  V  I  C  R  *  G  M  C :   *  K  R  L  E  Q  K  G  W  *  R  S  *  F  N  I  Y  V  L  Q  R  I  G  F  L  V  M  T  P  I  *  *  H  L  S  I  I  Q  L  Y  T  P  L  L  R  L  K  R :   V  K  W  Q  H  R  Y  S  N  Q  W  C  L  L  V  L  H  L  M  L  Q  H  I  I  S  *  L  T  A  V  A  L  L  D  V  S  D  L  H  L  P  *  S  L  *  C  S  A  L  V  S  T  L  K  Q  *  L  *  L  A  C  *  R :   Y  C  *  D  L  R  T  L  M  E   </first_frame>
            <second_frame>  Q  K  N  I  K  C  I  C  C  E  A  F  E  V  V  L  Q  *  C  Y  A  C  L  C  T  S  S  K  L  *  F  G  *  T  V  D  V  T   : D  A  N  S  W  F  A  T  I  R  E  Y  I  *  W  L  H  *  G  N  C  Y  H  K  R  L  *  *  R  G  G  S   : A  K  G  Y  E  R  E  K  Y  *  A  S  *  F  N  S  C  C  F  S  S  H  V  Q  Q  R  V  G  T  Q  S  S  R  G  F  L  G  *  D  V  Q  N  P  *  S  S  S  L  *  C  F  S  *  S  M  *  C  S   : G  S  A  R  T  S  S  S  N  I  G  *  D  E  K  V  E  S  S  A  K  Y  Q  D  I  *  V  A  I  L  T  V  W  *  C  K  C  T  L  *  R  G  Q  H  A  V  T  S  G  C  C  *  K  D  K  C  Y  R  N  G  H  D  E  E  W  H  S  A  Q  S  S  V  V  E  E  C   : V  E  S  A  W  N  R  R  D  G  K  G  A  D  S  I  F  T  C  C  R  E  S  V  F  S  L  *  H  L  Y  D  N  T  C  L  *  Y  S  F  T  L  P  Y  *  G  *  R   : E  *  S  G  N  T  D  I  Q  I  N  G  V  F  W  C  Y  T  *  C  C  N  I  *  Y  H  D  *  R  L  *  H  C  W  M  F  Q  I  C  T  Y  P  D  L  Y  D  V  P  H  W  F  Q  P  S  S  S  D  F  N  W  P  V  K   : D  I  V  E  I  *  G  L  *  W  S  </second_frame>
            <third_frame>   R  K  T  L  S  A  S  V  V  K  L  L  R  W  S  F  N  D  V  M  H  A  C  A  Q  V  Q  N  C  D  L  A  E  Q  L  M  L  Q  :  M  Q  T  L  G  L  Q  P  S  G  S  T  Y  D  G  F  I  R  A  I  A  T  T  R  G  F  S  D  G  V  E  V  :  L  K  V  M  K  E  K  N  I  K  P  H  D  S  T  L  A  V  L  A  V  M  C  S  R  E  L  E  L  N  L  A  E  A  F  L  D  E  M  S  K  I  H  N  P  R  P  Y  N  A  F  L  E  A  C  D  V  L  :  D  R  P  E  R  A  V  Q  I  L  A  K  M  K  R  L  N  L  Q  P  N  I  R  T  Y  E  L  L  F  S  L  F  G  N  V  N  A  P  Y  E  E  G  N  M  L  S  Q  V  D  V  A  K  R  I  N  A  I  E  M  D  M  M  R  N  G  I  P  H  S  H  L  S  L  R  N  V  :  L  K  A  L  G  T  E  G  M  V  K  E  L  I  Q  Y  L  R  A  A  E  N  R  F  S  R  Y  D  T  Y  M  I  T  P  V  Y  N  T  A  L  H  S  L  I  E  A  K  E  :  S  K  V  A  T  Q  I  F  K  S  M  V  S  S  G  V  T  P  D  A  A  T  Y  N  I  M  I  D  G  C  S  I  V  G  C  F  R  S  A  L  T  L  I  S  M  M  F  R  T  G  F  N  P  Q  A  V  T  L  T  G  L  L  K  :  I  L  L  R  S  E  D  F  D  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6738" stop="6625"/>
                    <exon start="6394" stop="6299"/>
                    <exon start="6193" stop="6020"/>
                    <exon start="5478" stop="5251"/>
                    <exon start="3315" stop="3172"/>
                    <exon start="3078" stop="2890"/>
                    <exon start="2288" stop="2256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKTLSASVVKLLRWSFNDVMHACAQVQNCDLAEQLMLQMQTLGLQPSGSTYDGFIRAIATTRGFSDGVEVLKVMKEKNIKPHDSTLAVLAVMCSRELELNLAEAFLDEMSKIHNPRPYNAFLEACDVLDRPERAVQILAKMKRLNLQPNIRTYELLFSLFGNVNAPYEEGNMLSQVDVAKRINAIEMDMMRNGIPHSHLSLRNVLKALGTEGMVKELIQYLRAAENRFSRYDTYMITPVYNTALHSLIEAKESKVATQIFKSMVSSGVTPDAATYNIMIDGCSIVGCFRSALTLISMMFRTGFNPQAVTLTGLLKILLRSEDFDGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14136" PGL_stop="11567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14136" e_stop="14125"/>
            <exon e_start="14038" e_stop="13782"/>
            <exon e_start="13572" e_stop="13486"/>
            <exon e_start="13390" e_stop="13160"/>
            <exon e_start="12535" e_stop="12457"/>
            <exon e_start="12376" e_stop="12313"/>
            <exon e_start="11644" e_stop="11567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.985" acc_prob="0.655" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14136" e_stop="14125" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14124" i_stop="14039" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="14038" e_stop="13782" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13572" e_stop="13486" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.655">
            <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13390" e_stop="13160" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.886" acc_prob="0.984">
            <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12535" e_stop="12457" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12376" e_stop="12313" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11644" e_stop="11567" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14136" stop="14125"/>
              <exon start="14038" stop="13782"/>
              <exon start="13572" stop="13486"/>
              <exon start="13390" stop="13160"/>
              <exon start="12535" stop="12457"/>
              <exon start="12376" stop="12313"/>
              <exon start="11644" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGACCCAAAA : GAATCTCTACCTCAAGAGTATGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAG : CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAG : GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG : TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG : CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG : GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACC</gDNA_template>
            <first_frame> W  D  P  K  :  E  S  L  P  Q  E  Y  A  R  I  F  A  F  D  N  F  N  R  T  Q  K  H  V  L  S  R  A  R  E  M  E  Q  N  V  D  E  C  I  P  A  G  S  Y  A  R  L  H  I  R  E  V  P  N  G  V  A  N  K  L  N  L  V  T  K  T  M  P  V  I  L  C  G  L  M  Q  H  E  S  K  I  S  V  L  H  F  S :   L  K  K  H  D  S  Y  T  D  P  I  K  S  K  E  E  M  I  F  N  L  G  F  R  Q  F  V  A  R :   P  I  F  S  S  D  S  F  N  A  D  K  Q  K  M  E  R  F  L  H  P  G  R  F  S  V  A  S  V  Y  A  P  I  S  F  P  P  L  P  L  I  A  L  K  I  K  D  D  A  T  P  A  T  V  A  A  I  G  S  L  R  S  I  D  P  D  R  I  I  L  K  K  I  I  L  T  G :   Y  P  Q  R  V  S  K  Q  K  A  T  V  R  Y  M  F  H  N  P  E  D  V  R  W  F  K  :  P  V  E  V  W  S  K  C  G  R  R  G  R  I  K  E  P  V  G  T  H   : G  A  M  K  C  I  L  N  G  V  L  Q  Q  H  D  T  L  C  M  S  L  F  K  R  T  Y  </first_frame>
            <second_frame>  G  T  Q  K :   N  L  Y  L  K  S  M  L  E  Y  L  H  L  T  I  L  I  G  R  K  S  M  Y  C  L  E  P  E  R  W  N  R  T  L  M  N  V  Y  Q  L  V  H  M  Q  G  S  I  S  G  K  F  Q  M  V  W  Q  T  S  *  I  L  *  R  R  Q  C  L  *  S  C  V  V  *  C  S  M  S  L  K  F  L  S  F  T  S   : A  *  K  S  T  T  V  T  L  I  Q  *  N  L  K  K  R  *  Y  S  I  L  G  F  A  S  L  L  Q   : G  P  Y  F  L  P  I  V  L  T  L  I  S  K  K  W  R  D  F  S  I  P  G  V  F  Q  *  L  Q  Y  M  L  L  F  H  F  L  P  F  L  *  L  P  *  R  L  K  T  M  Q  L  L  P  L  L  L  P  L  A  L  *  E  V  L  T  Q  I  G  L  F  *  R  K  L  F  *  P   : V  T  L  N  E  Y  Q  N  R  K  R  R  *  D  T  C  F  I  T  Q  R  M  S  D  G  S  S :   L  L  K  F  G  Q  S  V  V  V  V  V  A  S  R  N  L  L  V  H  M  :  G  Q  *  S  A  S  *  M  E  S  S  N  S  M  T  R  Y  A  *  V  C  L  N  A  H  T </second_frame>
            <third_frame>   G  P  K   : R  I  S  T  S  R  V  C  *  N  I  C  I  *  Q  F  *  *  D  A  K  A  C  T  V  *  S  P  R  D  G  T  E  R  *  *  M  Y  T  S  W  F  I  C  K  A  P  Y  P  G  S  S  K  W  C  G  K  Q  V  K  S  C  N  E  D  N  A  C  D  P  V  W  S  D  A  A  *  V  *  N  F  C  P  S  L  Q  :  L  K  K  A  R  Q  L  H  *  S  N  K  I  *  R  R  D  D  I  Q  S  W  V  S  P  V  C  C  K  :  A  H  I  F  F  R  *  F  *  R  *  *  A  K  N  G  E  I  S  P  S  R  A  F  F  S  S  F  S  I  C  S  Y  F  I  S  S  P  S  F  N  C  P  E  D  *  R  R  C  N  S  C  H  C  C  C  H  W  L  F  E  K  Y  *  P  R  *  D  Y  S  K  E  N  Y  F  N  R  :  L  P  S  T  S  I  K  T  E  S  D  G  K  I  H  V  S  *  P  R  G  C  Q  M  V  Q   : A  C  *  S  L  V  K  V  W  S  S  W  S  H  Q  G  T  C  W  Y  T  W :   G  N  E  V  H  L  E  W  S  P  P  T  A  *  H  V  M  H  E  F  V  *  T  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14136" stop="14125"/>
                    <exon start="14038" stop="13782"/>
                    <exon start="13572" stop="13486"/>
                    <exon start="13390" stop="13160"/>
                    <exon start="12535" stop="12457"/>
                    <exon start="12376" stop="12313"/>
                    <exon start="11644" stop="11568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDPKESLPQEYARIFAFDNFNRTQKHVLSRAREMEQNVDECIPAGSYARLHIREVPNGVANKLNLVTKTMPVILCGLMQHESKISVLHFSLKKHDSYTDPIKSKEEMIFNLGFRQFVARPIFSSDSFNADKQKMERFLHPGRFSVASVYAPISFPPLPLIALKIKDDATPATVAAIGSLRSIDPDRIILKKIILTGYPQRVSKQKATVRYMFHNPEDVRWFKPVEVWSKCGRRGRIKEPVGTHGAMKCILNGVLQQHDTLCMSLFKRTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="25657" PGL_stop="21806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25657" e_stop="25586"/>
            <exon e_start="25318" e_stop="25161"/>
            <exon e_start="24459" e_stop="24390"/>
            <exon e_start="24299" e_stop="24244"/>
            <exon e_start="23981" e_stop="23856"/>
            <exon e_start="23343" e_stop="23204"/>
            <exon e_start="22889" e_stop="22817"/>
            <exon e_start="22694" e_stop="22620"/>
            <exon e_start="22355" e_stop="21806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.755" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25657" e_stop="25586" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.978">
            <gDNA_intron_boundary i_start="25585" i_stop="25319" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25318" e_stop="25161" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24459" e_stop="24390" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24299" e_stop="24244" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.755" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24243" i_stop="23982" i_length="262"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23981" e_stop="23856" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23343" e_stop="23204" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22889" e_stop="22817" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.869">
            <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22694" e_stop="22620" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.781">
            <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22355" e_stop="21806" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25586"/>
              <exon start="25318" stop="25161"/>
              <exon start="24459" stop="24390"/>
              <exon start="24299" stop="24244"/>
              <exon start="23981" stop="23856"/>
              <exon start="23343" stop="23204"/>
              <exon start="22889" stop="22817"/>
              <exon start="22694" stop="22620"/>
              <exon start="22355" stop="21806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8933-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23981" stop="23856"/>
              <exon start="23343" stop="23204"/>
              <exon start="22889" stop="22817"/>
              <exon start="22694" stop="22620"/>
              <exon start="22355" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAG : ATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG : GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG : GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAG : GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAG : GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG : GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG : ATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAAT : AGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</gDNA_template>
            <first_frame> S  K  Q  R  V  S  C  R  D  D  C  S  Y  L  L  P  E  Q  E  R  L  R  *  Q  :  I  N  C  L  C  S  R  V  L  G  S  M  G  G  S  S  *  L  R  S  L  R  C  G  F  F  P  F  *  V  K  R  N  S  Y  P  V  H  T  H  L  I  *  I  T  R  L  I  G  L  S  *  R :   L  F  Q  W  R  M  *  M  G  V  N  L  *  K  Q  G  I  S  V  K  E  E  M  :  E  E  E  L  I  L  I  G  I  G  V  W  I  G  A  R  K  R  R :   I  M  I  H  M  K  K  I  L  G  P  P  L  L  V  S  P  R  H  K  L  C  G  K  Y  V  H  H  L  N  H  M  Y  G  L  T  C  I  L  E  W  R :   L  Y  L  C  H  M  I  T  R  T  R  L  R  K  D  Y  L  L  R  G  *  D  *  C  L  K  S  *  I  V  F  S  *  M  I  V  A  W  L  D  L  A  E  A  L  S   : G  I  *  L  T  G  Q  Q  L  I  T  C  M  I  L  Q  E  C  P  C  L  S  P  S  R :   S  M  V  I  A  R  P  R  Q  R  T  A  L  R  C  S  I  P  L  T  S  L  L  L  I :   E  F  S  T  T  G  L  L  H  F  L  R  C  S  V  W  V  E  S  R  L  R  N  F  I  Q  M  Q  L  D  P  V  L  R  S  G  S  L  S  M  I  I  *  M  V  I  *  W  K  G  K  V  G  T  G  R  K  W  R  C  S  S  W  E  C  R  R  L  G  H  T  L  D  C  S  C  Y  H  L  Y  F  *  C  L  C  F  V  Q  E  S  Q  R  A  A  G  K  L  F  L  L  C  P  C  D  S  V  M  V  F  F  A  A  L  E  I  *  L  D  S  F  E  R  A  R  R  *  K  K  G  H  A  K  I  F  F  S  C  V  I  Y  Y  L  I  S  F  S  L  *  F  Y  I  E  C  *  S  L  E  R  L  L  L  M  L  N  C  *  H  C  L  V  E  S  V  D  R  *  Y  R  F  L  S  C  P </first_frame>
            <second_frame>  Q  N  K  G  Y  H  A  E  T  T  V  V  T  Y  C  R  N  K  K  D  C  D  D  R :   *  I  A  C  V  P  E  F  W  A  A  W  E  G  A  H  N  Y  G  A  C  V  A  D  S  F  H  F  K  *  R  G  I  L  I  Q  C  I  P  T  *  F  K  *  H  A  *  *  A  C  H  K   : G  C  S  N  G  E  C  E  W  A  *  T  C  R  S  R  G  S  L  *  K  K  K  W :   K  R  S  *  S  *  S  E  L  E  C  G  L  G  Q  E  R  E   : G  L  *  S  I  *  R  K  S  W  V  R  P  F  *  *  A  R  D  T  N  Y  A  E  N  M  C  I  I  *  T  T  C  M  G  *  R  A  F  W  N  G   : G  S  I  Y  A  I  *  S  Q  E  H  D  S  G  R  I  T  F  S  E  D  E  I  N  A  *  K  V  E  S  F  S  A  E  *  S  L  L  G  W  I  W  R  R  L  C  R  :  V  S  S  S  R  D  S  N  *  L  H  V  *  Y  C  K  S  A  H  V  F  H  L  R   : D  L  W  *  *  H  G  L  V  K  G  L  L  *  D  V  Q  S  H  *  H  H  Y  F  *   : *  S  S  Q  R  L  V  C  C  I  F  Y  A  V  Q  F  G  W  S  P  D  *  G  T  S  S  K  C  N  W  I  R  F  *  E  V  G  L  Y  R  *  L  S  E  W  L  F  N  G  K  E  K  *  V  R  E  E  N  G  G  A  R  A  G  N  A  G  D  *  D  I  L  *  I  V  L  V  I  I  C  T  S  D  V  Y  V  L  F  K  N  L  K  E  R  P  A  N  C  F  C  Y  V  L  V  I  L  *  W  Y  S  L  L  P  L  R  F  S  *  T  V  L  R  E  L  E  G  E  K  K  G  M  P  K  Y  S  L  A  V  *  F  I  T  *  F  L  F  P  F  D  S  I  *  N  A  R  A  *  K  G  S  C  *  C  *  I  V  N  I  V  W  L  R  V  W  I  D  N  I  D  F  C  H  V   </second_frame>
            <third_frame>   K  T  K  G  I  M  Q  R  R  L  *  L  L  I  A  G  T  R  K  T  A  M  T   : D  K  L  L  V  F  Q  S  F  G  Q  H  G  R  E  L  I  T  T  E  L  A  L  R  I  L  S  I  L  S  E  E  E  F  L  S  S  A  Y  P  L  N  L  N  N  T  L  D  R  L  V  I  K  :  V  V  P  M  E  N  V  N  G  R  K  L  V  E  A  G  D  L  C  E  R  R  N   : G  R  G  V  D  L  N  R  N  W  S  V  D  W  G  K  K  E  K  :  D  Y  D  P  Y  E  E  N  P  G  S  A  P  F  S  E  P  E  T  Q  I  M  R  K  I  C  A  S  F  E  P  H  V  W  V  N  V  H  S  G  M  E  :  A  L  F  M  P  Y  D  H  K  N  T  T  P  E  G  L  P  S  Q  R  M  R  L  M  L  E  K  L  N  R  F  Q  L  N  D  R  C  L  V  G  S  G  G  G  S  V  G :   Y  L  A  H  G  T  A  T  D  Y  M  Y  D  I  A  R  V  P  M  S  F  T  F  E  :  I  Y  G  D  S  T  A  S  S  K  D  C  F  K  M  F  N  P  T  D  I  T  T  F  N  :  R  V  L  N  D  W  S  A  A  F  F  T  L  F  S  L  G  G  V  Q  I  E  E  L  H  P  N  A  T  G  S  G  F  E  K  W  V  S  I  D  D  Y  L  N  G  Y  L  M  E  R  K  S  R  Y  G  K  K  M  E  V  L  E  L  G  M  Q  E  I  R  T  Y  F  R  L  F  L  L  S  S  V  L  L  M  F  M  F  C  S  R  I  S  K  S  G  R  Q  I  V  S  A  M  S  L  *  F  C  D  G  I  L  C  C  P  *  D  L  A  R  Q  F  *  E  S  *  K  V  K  K  R  A  C  Q  N  I  L  *  L  C  N  L  L  P  N  F  F  F  P  L  I  L  Y  R  M  L  E  L  R  K  A  L  V  D  V  E  L  L  T  L  F  G  *  E  C  G  *  I  I  *  I  F  V  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25622" stop="25586"/>
                    <exon start="25318" stop="25161"/>
                    <exon start="24459" stop="24390"/>
                    <exon start="24299" stop="24244"/>
                    <exon start="23981" stop="23856"/>
                    <exon start="23343" stop="23204"/>
                    <exon start="22889" stop="22817"/>
                    <exon start="22694" stop="22620"/>
                    <exon start="22355" stop="22044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIAGTRKTAMTDKLLVFQSFGQHGRELITTELALRILSILSEEEFLSSAYPLNLNNTLDRLVIKVVPMENVNGRKLVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGSAPFSEPETQIMRKICASFEPHVWVNVHSGMEALFMPYDHKNTTPEGLPSQRMRLMLEKLNRFQLNDRCLVGSGGGSVGYLAHGTATDYMYDIARVPMSFTFEIYGDSTASSKDCFKMFNPTDITTFNRVLNDWSAAFFTLFSLGGVQIEELHPNATGSGFEKWVSIDDYLNGYLMERKSRYGKKMEVLELGMQEIRTYFRLFLLSSVLLMFMFCSRISKSGRQIVSAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="43684" PGL_stop="39579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43684" e_stop="43578"/>
            <exon e_start="42221" e_stop="42122"/>
            <exon e_start="42023" e_stop="41990"/>
            <exon e_start="41901" e_stop="41825"/>
            <exon e_start="41281" e_stop="41256"/>
            <exon e_start="41178" e_stop="41014"/>
            <exon e_start="40581" e_stop="40467"/>
            <exon e_start="39983" e_stop="39579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.418" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.679" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.541" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43684" e_stop="43578" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42221" e_stop="42122" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.418" acc_prob="0.831">
            <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42023" e_stop="41990" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.840">
            <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="41825" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.679">
            <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41281" e_stop="41256" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="0.773" acc_prob="0.969">
            <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41178" e_stop="41014" e_length="165"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40581" e_stop="40467" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.541" acc_prob="0.956">
            <gDNA_intron_boundary i_start="40466" i_stop="39984" i_length="483"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39983" e_stop="39579" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43684" stop="43578"/>
              <exon start="42221" stop="42122"/>
              <exon start="42023" stop="41990"/>
              <exon start="41901" stop="41825"/>
              <exon start="41281" stop="41256"/>
              <exon start="41178" stop="41014"/>
              <exon start="40581" stop="40467"/>
              <exon start="39983" stop="39579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6670-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43653" stop="43578"/>
              <exon start="42221" stop="42122"/>
              <exon start="42023" stop="41990"/>
              <exon start="41901" stop="41825"/>
              <exon start="41281" stop="41256"/>
              <exon start="41178" stop="41014"/>
              <exon start="40581" stop="40467"/>
              <exon start="39983" stop="39632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6670-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC : GGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT : TTATTAAGACCTCGACCTCGGAAACTTGGTCTAG : GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT : CCAAAATACCTGCCAAGATTTATCAA : GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG : GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAG : GTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</gDNA_template>
            <first_frame> E  I  N  K  M  G  E  K  N  K  Y  S  I  I  I  P  T  Y  N  E  R  L  N  I  A  L  I  I  Y  L  V  F  K  H  L  T :   D  V  D  F  E  I  I  V  V  D  D  G  S  P  D  G  T  Q  D  I  V  K  Q  L  Q  K  V  Y  G  E  D  R  I  :  L  L  R  P  R  P  R  K  L  G  L   : G  T  A  Y  I  H  G  L  K  H  A  S  G  N  F  V  V  I  M  D  A  D  L  S  H  H  :  P  K  Y  L  P  R  F  I  K :   K  Q  M  E  T  G  A  N  I  V  T  G  T  R  Y  V  S  S  G  G  V  H  G  W  N  L  M  R  K  L  T  S  R  G  A  N  V  L  A  Q  T  L  L  W  P  G  V  S  D  L  T  G  S  F  R :   L  Y  Q  K  S  A  L  E  D  I  I  S  S  C  V  S  K  G  Y  V  F  Q  M  E  M  I  V  R  A  S  R  K  G  Y  R  I  E  E  :  V  P  I  T  F  V  D  R  V  F  G  S  S  K  L  G  G  S  E  I  V  E  Y  L  K  G  L  L  Y  L  L  V  T  T  *  Y  V  *  Q  A  A  *  P  E  N  L  K  T  *  V  V  L  Q  P  V  T  F  *  R  L  E  L  G  P  Y  N  K  F  F  F  F  L  L  Q  L  M  *  P  K  L  *  *  M  S  Y  Y  V  L  E  R  V  L  L  K  *  F  P  M  L  L  W  F  I  L  W  M  M  L  S  I  F  G  *  Y  T  C  S  S  Y  L  *  I  L  T  C  I  F  Q  L  I  *  M  S  T  S </first_frame>
            <second_frame>  R  S  T  K  W  G  R  R  T  S  T  V  *  L  Y  L  P  T  M  N  V  S  I  L  L  S  S  S  T  S  S  S  S  I  S   : R  M  L  I  L  K  *  *  *  W  M  M  E  V  Q  M  A  H  R  I  L  S  N  N  C  R  K  Y  M  E  K  I  V  F :   Y  *  D  L  D  L  G  N  L  V  *  :  A  L  R  I  F  M  V  *  S  M  P  Q  A  I  L  L  L  L  W  M  R  I  F  L  T  I :   Q  N  T  C  Q  D  L  S   : R  N  K  W  R  Q  V  P  I  *  L  L  E  L  D  M  F  L  V  V  V  S  T  D  G  T  L  C  A  N  *  R  A  G  E  P  M  S  L  H  R  H  Y  F  G  R  V  Y  Q  T  *  L  D  P  S   : G  C  T  R  S  L  H  *  K  T  S  *  A  L  V  S  V  K  D  M  F  F  R  W  R  *  L  L  G  L  Q  E  K  V  T  A  L  K  R :   F  Q  L  L  S  L  I  E  Y  L  E  V  L  S  L  E  D  L  K  *  W  S  I  *  R  A  F  C  I  F  W  L  Q  L  D  M  F  N  K  L  H  D  Q  R  I  *  R  L  E  L  F  C  N  L  *  H  S  E  D  L  N  *  D  H  I  T  N  S  F  S  F  C  F  S  *  C  N  Q  N  F  D  E  *  A  I  M  Y  W  K  E  C  C  *  S  N  F  Q  C  Y  F  G  L  F  C  G  *  C  F  P  F  L  D  N  T  L  V  Q  V  I  C  E  Y  *  L  A  F  S  S  L  Y  K  C  L  L   </second_frame>
            <third_frame>   D  Q  Q  N  G  G  E  E  Q  V  Q  Y  N  Y  T  Y  L  Q  *  T  S  Q  Y  C  S  H  H  L  P  R  L  Q  A  S  H  :  G  C  *  F  *  N  N  S  S  G  *  W  K  S  R  W  H  T  G  Y  C  Q  T  I  A  E  S  I  W  R  R  S  Y   : F  I  K  T  S  T  S  E  T  W  S  R :   H  C  V  Y  S  W  F  E  A  C  L  R  Q  F  C  C  Y  Y  G  C  G  S  F  S  P   : S  K  I  P  A  K  I  Y  Q  :  E  T  N  G  D  R  C  Q  Y  S  Y  W  N  S  I  C  F  *  W  W  C  P  R  M  E  P  Y  A  Q  I  D  E  Q  G  S  Q  C  P  C  T  D  T  T  L  A  G  C  I  R  L  N  W  I  L  P  :  A  V  P  E  V  C  T  R  R  H  H  K  L  L  C  Q  *  R  I  C  F  S  D  G  D  D  C  *  G  F  K  K  R  L  P  H  *  R   : G  S  N  Y  F  R  *  *  S  I  W  K  F  *  A  W  R  I  *  N  S  G  V  S  K  G  P  S  V  S  S  G  Y  N  L  I  C  L  T  S  C  M  T  R  E  S  E  D  L  S  C  F  A  T  C  D  I  L  K  T  *  T  R  T  I  *  Q  I  L  F  L  F  A  S  A  D  V  T  K  T  L  M  N  E  L  L  C  I  G  K  S  V  A  E  V  I  S  N  A  T  L  V  Y  F  V  D  D  A  F  H  F  W  I  I  H  L  F  K  L  S  V  N  I  N  L  H  F  P  A  Y  I  N  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43684" stop="43578"/>
                    <exon start="42221" stop="42122"/>
                    <exon start="42023" stop="41990"/>
                    <exon start="41901" stop="41825"/>
                    <exon start="41281" stop="41256"/>
                    <exon start="41178" stop="41014"/>
                    <exon start="40581" stop="40467"/>
                    <exon start="39983" stop="39879"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EINKMGEKNKYSIIIPTYNERLNIALIIYLVFKHLTDVDFEIIVVDDGSPDGTQDIVKQLQKVYGEDRILLRPRPRKLGLGTAYIHGLKHASGNFVVIMDADLSHHPKYLPRFIKKQMETGANIVTGTRYVSSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYQKSALEDIISSCVSKGYVFQMEMIVRASRKGYRIEEVPITFVDRVFGSSKLGGSEIVEYLKGLLYLLVTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39786" stop="39580"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QILFLFASADVTKTLMNELLCIGKSVAEVISNATLVYFVDDAFHFWIIHLFKLSVNINLHFPAYINVYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="56678" PGL_stop="55353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56678" e_stop="56543"/>
            <exon e_start="56220" e_stop="56008"/>
            <exon e_start="55903" e_stop="55856"/>
            <exon e_start="55741" e_stop="55683"/>
            <exon e_start="55458" e_stop="55353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.970" e_score="0.986"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.525" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56678" e_stop="56543" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.915">
            <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="56220" e_stop="56008" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.901" acc_prob="0.970">
            <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55903" e_stop="55856" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="55741" e_stop="55683" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.525">
            <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55458" e_stop="55353" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56678" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG : CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG : TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG : GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG : ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGG</gDNA_template>
            <first_frame> D  I  I  D  S  L  M  *  A  H  *  R  N  L  *  E  D  I  L  H  A  L  R  L  L  Y  N  C  K  H  *  L  C  H  V  R  *  I  K  F  *  Q  Y  P  S   : A  Y  R  F  N  S  D  I  *  R  E  S  S  Q  C  H  L  A  L  V  L  T  S  K  R  T  V  W  M  G  S  S  K  R  I  D  G  K  F  N  T  *  D  A  F  W  R  E  T  *  V  S  K  *  I  S  A  S  C  A  V  P  F  T  F  T  *  F  A  E  *   : V  *  T  E  *  P  *  P  A  N  S  H  F  *  P  S   : G  *  R  G  I  K  I  S  G  I  *  D  H  R  F  S  R  Q  P  E  :  I  S  A  *  K  I  K  F  *  G  A  A  L  H  M  R  W  R  *  Q  R  G  P  L  F  C  W  H  I  I  W  E  T  P  V  </first_frame>
            <second_frame>  I  S  S  I  P  S  C  K  L  I  E  E  T  C  E  R  I  F  S  M  H  F  D  Y  C  T  T  A  S  I  D  F  V  M  L  D  E  S  S  F  S  N  I  L  Q  :  H  T  D  L  T  V  T  S  E  E  R  V  L  N  A  I  L  L  W  C  L  Q  A  R  E  L  Y  G  W  E  A  V  N  E  L  M  V  N  S  T  P  E  M  L  F  G  E  R  L  E  S  L  N  E  F  L  H  L  V  R  F  P  L  L  S  P  D  L  L  N  K  :  F  E  Q  S  S  L  S  Q  Q  I  P  T  F  D  H  L  :  V  K  E  A  L  R  F  L  E  F  E  I  T  D  F  Q  G  N  Q  R :   F  Q  H  R  K  S  S  F  K  E  L  L  Y  I  C  D  G  D  S  N  G  V  L  Y  F  A  G  T  S  Y  G  K  H  Q  W </second_frame>
            <third_frame>   Y  H  R  F  P  H  V  S  S  L  K  K  P  V  R  G  Y  S  P  C  T  S  I  I  V  Q  L  Q  A  L  T  L  S  C  *  M  N  Q  V  L  A  I  S  F  S :   I  Q  I  *  Q  *  H  L  K  R  E  F  S  M  P  S  C  F  G  A  Y  K  Q  E  N  C  M  D  G  K  Q  *  T  N  *  W  *  I  Q  H  L  R  C  F  L  E  R  D  L  S  L  *  M  N  F  C  I  L  C  G  S  L  Y  F  H  L  I  C  *  I  S :   L  N  R  V  A  L  A  S  K  F  P  L  L  T  I  W :   L  K  R  H  *  D  F  W  N  L  R  S  P  I  F  K  A  T  R   : D  F  S  I  E  N  Q  V  L  R  S  C  S  T  Y  A  M  E  I  A  T  G  S  F  I  L  L  A  H  H  M  G  N  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56677" stop="56543"/>
                    <exon start="56220" stop="56008"/>
                    <exon start="55903" stop="55856"/>
                    <exon start="55741" stop="55683"/>
                    <exon start="55458" stop="55353"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSIPSCKLIEETCERIFSMHFDYCTTASIDFVMLDESSFSNILQHTDLTVTSEERVLNAILLWCLQARELYGWEAVNELMVNSTPEMLFGERLESLNEFLHLVRFPLLSPDLLNKFEQSSLSQQIPTFDHLVKEALRFLEFEITDFQGNQRFQHRKSSFKELLYICDGDSNGVLYFAGTSYGKHQW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 58 chains have been computed
$ 
$ memory statistics:
$ 20008 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2223 bytes was the average size of a spliced alignment
$ 11224 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2244 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 58 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:25:35
-->
